NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F068062

Metagenome / Metatranscriptome Family F068062

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F068062
Family Type Metagenome / Metatranscriptome
Number of Sequences 125
Average Sequence Length 43 residues
Representative Sequence PRFALRGLKKSAAATRQRDKDEGADEIQTNSARHPRTFNEFI
Number of Associated Samples 111
Number of Associated Scaffolds 125

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 96.80 %
% of genes from short scaffolds (< 2000 bps) 90.40 %
Associated GOLD sequencing projects 106
AlphaFold2 3D model prediction Yes
3D model pTM-score0.18

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (95.200 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(26.400 % of family members)
Environment Ontology (ENVO) Unclassified
(46.400 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(50.400 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 0.00%    Coil/Unstructured: 100.00%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.18
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 125 Family Scaffolds
PF09917DUF2147 21.60
PF03797Autotransporter 8.00
PF04773FecR 3.20
PF13432TPR_16 3.20
PF02666PS_Dcarbxylase 1.60
PF01925TauE 0.80
PF13505OMP_b-brl 0.80
PF00005ABC_tran 0.80
PF13936HTH_38 0.80
PF06240COXG 0.80
PF13924Lipocalin_5 0.80
PF05598DUF772 0.80
PF12680SnoaL_2 0.80
PF00440TetR_N 0.80
PF03734YkuD 0.80
PF02518HATPase_c 0.80

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 125 Family Scaffolds
COG0688Phosphatidylserine decarboxylaseLipid transport and metabolism [I] 1.60
COG0730Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 familyInorganic ion transport and metabolism [P] 0.80
COG1376Lipoprotein-anchoring transpeptidase ErfK/SrfKCell wall/membrane/envelope biogenesis [M] 0.80
COG3034Murein L,D-transpeptidase YafKCell wall/membrane/envelope biogenesis [M] 0.80
COG3427Carbon monoxide dehydrogenase subunit CoxGEnergy production and conversion [C] 0.80

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms95.20 %
UnclassifiedrootN/A4.80 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000550|F24TB_13322382All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1026Open in IMG/M
3300000956|JGI10216J12902_114900739All Organisms → cellular organisms → Bacteria → Proteobacteria713Open in IMG/M
3300001085|JGI12187J13240_101033All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium542Open in IMG/M
3300001418|JGI20188J14859_1004073All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1993Open in IMG/M
3300001545|JGI12630J15595_10112508All Organisms → cellular organisms → Bacteria → Proteobacteria537Open in IMG/M
3300001593|JGI12635J15846_10346112All Organisms → cellular organisms → Bacteria → Proteobacteria913Open in IMG/M
3300002568|C688J35102_120820326All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → Rhodoplanes roseus1687Open in IMG/M
3300003369|JGI24140J50213_10128925All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae820Open in IMG/M
3300005339|Ga0070660_100563995All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium950Open in IMG/M
3300005339|Ga0070660_100783517All Organisms → cellular organisms → Bacteria → Proteobacteria801Open in IMG/M
3300005355|Ga0070671_102038573All Organisms → cellular organisms → Bacteria → Proteobacteria511Open in IMG/M
3300005356|Ga0070674_100144808All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1787Open in IMG/M
3300005456|Ga0070678_100470528All Organisms → cellular organisms → Bacteria → Proteobacteria1104Open in IMG/M
3300005518|Ga0070699_100903373All Organisms → cellular organisms → Bacteria → Proteobacteria809Open in IMG/M
3300005539|Ga0068853_100850258All Organisms → cellular organisms → Bacteria → Proteobacteria875Open in IMG/M
3300005541|Ga0070733_10466260All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium844Open in IMG/M
3300005548|Ga0070665_101339425All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium725Open in IMG/M
3300005576|Ga0066708_10404637All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium876Open in IMG/M
3300006173|Ga0070716_100350318All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1045Open in IMG/M
3300006173|Ga0070716_101514409All Organisms → cellular organisms → Bacteria → Proteobacteria549Open in IMG/M
3300006175|Ga0070712_100244640All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1430Open in IMG/M
3300006186|Ga0075369_10310841All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.736Open in IMG/M
3300006914|Ga0075436_100233021All Organisms → cellular organisms → Bacteria → Proteobacteria1308Open in IMG/M
3300006948|Ga0099826_10548357All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria533Open in IMG/M
3300006950|Ga0075524_10528323All Organisms → cellular organisms → Bacteria → Proteobacteria526Open in IMG/M
3300007258|Ga0099793_10271804All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium820Open in IMG/M
3300007265|Ga0099794_10222966All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosospira → Nitrosospira multiformis969Open in IMG/M
3300007265|Ga0099794_10284494All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria855Open in IMG/M
3300009089|Ga0099828_11274064All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae651Open in IMG/M
3300009090|Ga0099827_10687165All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria884Open in IMG/M
3300009148|Ga0105243_12835574All Organisms → cellular organisms → Bacteria → Proteobacteria525Open in IMG/M
3300009174|Ga0105241_11102525All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae748Open in IMG/M
3300009174|Ga0105241_11207503All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae717Open in IMG/M
3300009545|Ga0105237_11774762All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium624Open in IMG/M
3300009553|Ga0105249_10712588All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1064Open in IMG/M
3300009650|Ga0105857_1134534All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae684Open in IMG/M
3300009709|Ga0116227_10892832All Organisms → cellular organisms → Bacteria → Proteobacteria669Open in IMG/M
3300010043|Ga0126380_11881944All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria544Open in IMG/M
3300010046|Ga0126384_11611065All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales611Open in IMG/M
3300010359|Ga0126376_13191959All Organisms → cellular organisms → Bacteria → Proteobacteria507Open in IMG/M
3300010361|Ga0126378_13332502All Organisms → cellular organisms → Bacteria → Proteobacteria510Open in IMG/M
3300010396|Ga0134126_11055282All Organisms → cellular organisms → Bacteria908Open in IMG/M
3300010858|Ga0126345_1222290All Organisms → cellular organisms → Bacteria → Proteobacteria802Open in IMG/M
3300011270|Ga0137391_11139390All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria628Open in IMG/M
3300011444|Ga0137463_1063780All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1378Open in IMG/M
3300012096|Ga0137389_10655750All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium902Open in IMG/M
3300012096|Ga0137389_10841816All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium787Open in IMG/M
3300012189|Ga0137388_10184569All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei1871Open in IMG/M
3300012189|Ga0137388_10235226All Organisms → cellular organisms → Bacteria → Proteobacteria1663Open in IMG/M
3300012189|Ga0137388_11117895All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium725Open in IMG/M
3300012198|Ga0137364_11100999All Organisms → cellular organisms → Bacteria → Proteobacteria598Open in IMG/M
3300012203|Ga0137399_10950409All Organisms → cellular organisms → Bacteria → Proteobacteria724Open in IMG/M
3300012205|Ga0137362_10431647All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1141Open in IMG/M
3300012350|Ga0137372_10417707All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1012Open in IMG/M
3300012351|Ga0137386_10970571All Organisms → cellular organisms → Bacteria → Proteobacteria606Open in IMG/M
3300012359|Ga0137385_10750942All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria812Open in IMG/M
3300012363|Ga0137390_10591225All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1078Open in IMG/M
3300012363|Ga0137390_10687967All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium986Open in IMG/M
3300012582|Ga0137358_10115606All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1821Open in IMG/M
3300012683|Ga0137398_10968027All Organisms → cellular organisms → Bacteria → Proteobacteria591Open in IMG/M
3300012893|Ga0157284_10070933All Organisms → cellular organisms → Bacteria → Proteobacteria846Open in IMG/M
3300012918|Ga0137396_10490078All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria911Open in IMG/M
3300012923|Ga0137359_11540770All Organisms → cellular organisms → Bacteria → Proteobacteria552Open in IMG/M
3300012924|Ga0137413_11522228Not Available544Open in IMG/M
3300012929|Ga0137404_10019459All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei4873Open in IMG/M
3300012930|Ga0137407_11619376All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei617Open in IMG/M
3300012955|Ga0164298_11017318All Organisms → cellular organisms → Bacteria → Proteobacteria613Open in IMG/M
3300012960|Ga0164301_11333431All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei583Open in IMG/M
3300012961|Ga0164302_10640253All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae777Open in IMG/M
3300012961|Ga0164302_10821125All Organisms → cellular organisms → Bacteria → Proteobacteria704Open in IMG/M
3300012985|Ga0164308_10324275All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1233Open in IMG/M
3300012988|Ga0164306_10681506All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria815Open in IMG/M
3300012998|Ga0157362_1254149All Organisms → cellular organisms → Bacteria → Proteobacteria511Open in IMG/M
3300013296|Ga0157374_12084958All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium594Open in IMG/M
3300014325|Ga0163163_11569745All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria719Open in IMG/M
3300014326|Ga0157380_12343169All Organisms → cellular organisms → Bacteria → Proteobacteria599Open in IMG/M
3300014657|Ga0181522_10276549All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei995Open in IMG/M
3300015197|Ga0167638_1034383All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1150Open in IMG/M
3300015200|Ga0173480_10239693All Organisms → cellular organisms → Bacteria → Proteobacteria982Open in IMG/M
3300015242|Ga0137412_10569377All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei860Open in IMG/M
3300015372|Ga0132256_101263643All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae851Open in IMG/M
3300015374|Ga0132255_100295341All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2330Open in IMG/M
3300017975|Ga0187782_10278270All Organisms → cellular organisms → Bacteria → Proteobacteria1261Open in IMG/M
3300019789|Ga0137408_1261749All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1027Open in IMG/M
3300019883|Ga0193725_1110823All Organisms → cellular organisms → Bacteria → Proteobacteria638Open in IMG/M
3300020580|Ga0210403_10123682All Organisms → cellular organisms → Bacteria → Proteobacteria2107Open in IMG/M
3300021171|Ga0210405_10142260All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei1899Open in IMG/M
3300021180|Ga0210396_10441451All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1142Open in IMG/M
3300021403|Ga0210397_11156626All Organisms → cellular organisms → Bacteria → Proteobacteria601Open in IMG/M
3300021404|Ga0210389_10073957All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2613Open in IMG/M
3300025505|Ga0207929_1055552All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae751Open in IMG/M
3300025553|Ga0208080_1013416All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei3049Open in IMG/M
3300025553|Ga0208080_1026761All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1820Open in IMG/M
3300025904|Ga0207647_10162524All Organisms → cellular organisms → Bacteria → Proteobacteria1302Open in IMG/M
3300025923|Ga0207681_11622976All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium541Open in IMG/M
3300025931|Ga0207644_10619575All Organisms → cellular organisms → Bacteria → Proteobacteria899Open in IMG/M
3300025961|Ga0207712_11905326All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria532Open in IMG/M
3300026118|Ga0207675_100209923Not Available1872Open in IMG/M
3300027039|Ga0207855_1027512All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2771Open in IMG/M
3300027678|Ga0209011_1144237All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium672Open in IMG/M
3300027738|Ga0208989_10014456All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium2704Open in IMG/M
3300027787|Ga0209074_10537056All Organisms → cellular organisms → Bacteria → Proteobacteria513Open in IMG/M
3300027902|Ga0209048_10138304All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1829Open in IMG/M
3300027903|Ga0209488_10729171All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei708Open in IMG/M
3300027903|Ga0209488_10845902All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei645Open in IMG/M
3300028379|Ga0268266_10993407All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae812Open in IMG/M
3300028906|Ga0308309_11831273All Organisms → cellular organisms → Bacteria → Proteobacteria513Open in IMG/M
3300030739|Ga0302311_10132252All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1969Open in IMG/M
3300030943|Ga0311366_11628559All Organisms → cellular organisms → Bacteria → Proteobacteria552Open in IMG/M
3300031028|Ga0302180_10095840All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1707Open in IMG/M
3300031231|Ga0170824_114234518All Organisms → cellular organisms → Bacteria → Proteobacteria509Open in IMG/M
3300031366|Ga0307506_10079355All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1032Open in IMG/M
3300031681|Ga0318572_10160724All Organisms → cellular organisms → Bacteria → Proteobacteria1301Open in IMG/M
3300031708|Ga0310686_109782324All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales983Open in IMG/M
3300031708|Ga0310686_117336852All Organisms → cellular organisms → Bacteria → Proteobacteria633Open in IMG/M
3300031788|Ga0302319_10059981All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei5961Open in IMG/M
3300031946|Ga0310910_11401068All Organisms → cellular organisms → Bacteria → Proteobacteria538Open in IMG/M
3300031954|Ga0306926_12168281All Organisms → cellular organisms → Bacteria → Proteobacteria620Open in IMG/M
3300032896|Ga0335075_10943414All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae784Open in IMG/M
3300032955|Ga0335076_10169344All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-22095Open in IMG/M
3300034060|Ga0334983_0528344All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae656Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil26.40%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil10.40%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil5.60%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil4.80%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil4.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere4.00%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil3.20%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.20%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere2.40%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.60%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil1.60%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil1.60%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa1.60%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere1.60%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.60%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere1.60%
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment0.80%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater0.80%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog0.80%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil0.80%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.80%
Glacier Forefield SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil0.80%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.80%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.80%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.80%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.80%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.80%
Permafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil0.80%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.80%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil0.80%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen0.80%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog0.80%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.80%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.80%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere0.80%
Populus EndosphereHost-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere0.80%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere0.80%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere0.80%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.80%
Root NodulesHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules0.80%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.80%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.80%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.80%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.80%
Host-AssociatedHost-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated0.80%
Fungus GardenHost-Associated → Fungi → Mycelium → Unclassified → Unclassified → Fungus Garden0.80%
Boreal Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil0.80%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000550Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemlyEnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300001085Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_O1EnvironmentalOpen in IMG/M
3300001418Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-2 shallow-072012EnvironmentalOpen in IMG/M
3300001545Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1EnvironmentalOpen in IMG/M
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300002568Grasslands soil microbial communities from Hopland, California, USA - 2EnvironmentalOpen in IMG/M
3300003369Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 002-22AEnvironmentalOpen in IMG/M
3300005339Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaGHost-AssociatedOpen in IMG/M
3300005355Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaGHost-AssociatedOpen in IMG/M
3300005356Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaGHost-AssociatedOpen in IMG/M
3300005456Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaGHost-AssociatedOpen in IMG/M
3300005518Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaGEnvironmentalOpen in IMG/M
3300005539Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2Host-AssociatedOpen in IMG/M
3300005541Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1EnvironmentalOpen in IMG/M
3300005548Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaGHost-AssociatedOpen in IMG/M
3300005576Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157EnvironmentalOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006186Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4Host-AssociatedOpen in IMG/M
3300006914Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5Host-AssociatedOpen in IMG/M
3300006948Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15Host-AssociatedOpen in IMG/M
3300006950Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-oneEnvironmentalOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009148Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaGHost-AssociatedOpen in IMG/M
3300009174Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaGHost-AssociatedOpen in IMG/M
3300009545Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaGHost-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300009650Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-061EnvironmentalOpen in IMG/M
3300009709Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MGHost-AssociatedOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300010858Boreal forest soil eukaryotic communities from Alaska, USA - C3-2 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300011444Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2EnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012350Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012351Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012359Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012363Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaGEnvironmentalOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012683Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaGEnvironmentalOpen in IMG/M
3300012893Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S059-202B-1EnvironmentalOpen in IMG/M
3300012907Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1EnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012924Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012955Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MGEnvironmentalOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300012961Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MGEnvironmentalOpen in IMG/M
3300012985Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MGEnvironmentalOpen in IMG/M
3300012988Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MGEnvironmentalOpen in IMG/M
3300012998Fungus gardens microbial communities from leaf cutter ant in Ribeir?o Preto, State of S?o Paulo, Brazil - Atta laevigata ALBM3Host-AssociatedOpen in IMG/M
3300013296Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaGHost-AssociatedOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300014657Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaGEnvironmentalOpen in IMG/M
3300015197Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G6B, Proglacial plain, adjacent to northern proglacial tributary)EnvironmentalOpen in IMG/M
3300015200Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)EnvironmentalOpen in IMG/M
3300015242Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300017975Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300019789Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300019883Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2EnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021180Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-OEnvironmentalOpen in IMG/M
3300021403Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-OEnvironmentalOpen in IMG/M
3300021404Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-OEnvironmentalOpen in IMG/M
3300025505Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-1 deep-072012 (SPAdes)EnvironmentalOpen in IMG/M
3300025553Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 deep-092012 (SPAdes)EnvironmentalOpen in IMG/M
3300025904Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025923Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025931Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025961Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026118Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300027039Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 14 (SPAdes)EnvironmentalOpen in IMG/M
3300027678Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027738Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027787Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)EnvironmentalOpen in IMG/M
3300027902Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR (SPAdes)EnvironmentalOpen in IMG/M
3300027903Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)EnvironmentalOpen in IMG/M
3300028379Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300030739Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_3EnvironmentalOpen in IMG/M
3300030943III_Fen_N2 coassemblyEnvironmentalOpen in IMG/M
3300031028Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2EnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031366Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 25_SEnvironmentalOpen in IMG/M
3300031681Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031788Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2EnvironmentalOpen in IMG/M
3300031946Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172EnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300032896Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4EnvironmentalOpen in IMG/M
3300032955Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5EnvironmentalOpen in IMG/M
3300034060Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16May2013-rr0016EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
F24TB_1332238213300000550SoilRLAPPWLALCLEESTATACQRNKDKGADEIQTNSTRHPRKFGEFI*
JGI10216J12902_11490073933300000956SoilKKSATAARQRDKDDGADEIRANSARHARKFDEFI*
JGI12187J13240_10103333300001085Forest SoilGLKEAAAATCQRNKDERADEIKPNSARHPRRLVEFI*
JGI20188J14859_100407343300001418Arctic Peat SoilGLKKSAAATRQRDKDQGADEIPTNSARHPRNFKEFT*
JGI12630J15595_1011250813300001545Forest SoilKKSAAAARQRDKDEGADEIEANSARHPRRFDEFI*
JGI12635J15846_1034611213300001593Forest SoilGLKKSATAARQRNKDEGADEIQTNSARHARNFNEFI*
C688J35102_12082032613300002568SoilALLGLKESAAASRQRDKDEGADEIQTNSARHPRRFREFI*
JGI24140J50213_1012892513300003369Arctic Peat SoilLQACQFGLGPPRFALSGLKKSASATRQRDKDEGADQNQTNSARHPRTFNQFI*
Ga0070660_10056399543300005339Corn RhizosphereGPPRFALRGLKKSATATRQRDKDEGADEIQTNSARHPRTFNEFI*
Ga0070660_10078351723300005339Corn RhizosphereGPPRFALRGLKKSATATRQRDKDEGADEIQTNSARHPRTFDEFI*
Ga0070671_10203857313300005355Switchgrass RhizosphereFQACDLGLGPPRFALRGLKKAAAATCQRNKDKGADQDQTNSVRHPRTLVEFI*
Ga0070674_10014480843300005356Miscanthus RhizosphereGPPRFALGLEKATAATRQRDKDDGADEIKTNSMHHGRRFDEFI*
Ga0070678_10047052813300005456Miscanthus RhizosphereGFGLGPPRFALGLEKATAATRQRDKDDGADEIKTNSMHHGRRFGEFI*
Ga0070699_10090337323300005518Corn, Switchgrass And Miscanthus RhizosphereLGTPGFTLGELKKSATAARQRDKDDGADKVQTNSARHPRKFDEFI*
Ga0068853_10085025813300005539Corn RhizosphereFGLGPPRFALGLEKATAATRQRDKDDGADEIKTNSMHHGRRFGEFI*
Ga0070733_1046626013300005541Surface SoilGPPWPAFLGLKKSAAATRQRDKDQGADEIPANSARHPRNFKEFT*
Ga0070665_10133942533300005548Switchgrass RhizosphereGPPRFALGGLKSAAATRQGDKDEGADEIQTNSARHRRTFGEFI*
Ga0066708_1040463713300005576SoilKEPAAAACQRDKDEGADEVQTNSTRHPRNFGEFI*
Ga0070716_10035031813300006173Corn, Switchgrass And Miscanthus RhizosphereRFALGGLKKSAAAARQRNKDEGADEIQTNSARHGGTFDEFI*
Ga0070716_10151440913300006173Corn, Switchgrass And Miscanthus RhizosphereLRGLKKSTAAARQRDKDEGADEIQTNSARHPRRFDEFI*
Ga0070712_10024464033300006175Corn, Switchgrass And Miscanthus RhizosphereAGLQARDFSLGPPRLTLFEKEATATRQRDKDEGADEIPTNSVRHAQNFNEFI*
Ga0075369_1031084113300006186Populus EndosphereGLEKAASATRKRNKDDGADEIQTNSARHARTLGEFT*
Ga0075436_10023302133300006914Populus RhizosphereLGLEETTTAACQRSKDEGADEIQANSARHLHTFGDFI*
Ga0099826_1054835713300006948Root NodulesGPPRFTFGLEKAASATRKRNKDDGADEIQTNSARHARTFDEFT*
Ga0075524_1052832313300006950Arctic Peat SoilLKKSAAAARQRDKDEGADEIQTNSARHPRTFNEFI*
Ga0099793_1027180433300007258Vadose Zone SoilLGPPRFALLGLKKSATATRQRDKDEAADQIQTNSARHPRTFDEFI*
Ga0099794_1022296613300007265Vadose Zone SoilAGLQACDFGLGPPRFTLRGLKKSAAATRQRDKDEGADEVQANSGRHPRTFDQFI*
Ga0099794_1028449413300007265Vadose Zone SoilAGDFGLGPPRFALRGLKKSATATRQRNKDEGADEIQTNSARHPRTFNEFI*
Ga0099828_1127406433300009089Vadose Zone SoilDFGLGPPRFALRGLKESAAAARERDKDEGADEVQTNSARHPRTFNEFI*
Ga0099827_1068716533300009090Vadose Zone SoilGLGTPRFALGGLKKSATAARQRNKDKGADEIQTNSARHPRTFDEFI*
Ga0105243_1283557423300009148Miscanthus RhizosphereHRAGFETCDFCLGTPWLTFLGLKQTASATRKRYKDDGADEIQTNSARHSRKVVEMF*
Ga0105241_1110252523300009174Corn RhizosphereFGLEKAATATRERNEDDGADEIQTNSARHGRTFGEFT*
Ga0105241_1120750323300009174Corn RhizosphereGLQACQFGLGPPRFALRGLKKSAATTRKRNKDEGADEIQTNSTRHARKFDEFI*
Ga0105237_1177476233300009545Corn RhizosphereGPPRLTLGGLKQSAPTASQRNKDEGADEIQTNSTHHPGTFGEFI*
Ga0105249_1071258813300009553Switchgrass RhizospherePWFPLGLEKSTAAACQRNKDKGADEIQTNSTRHPRKFGEFI*
Ga0105857_113453433300009650Permafrost SoilPWFTLLGLKKSAAAARQRNKDEGADEIQANSARHPRNFNEFI*
Ga0116227_1089283213300009709Host-AssociatedGFQACDFCLGPPRLALLGLKQSATATRQRDKDKGADEIQTNSARHPRNIGQYI*
Ga0126380_1188194423300010043Tropical Forest SoilLEESATATRQRDKDDGADDIQTNSTRHPRTFGELP*
Ga0126384_1161106513300010046Tropical Forest SoilLRGLKESAAATCKRDEDERADKIQTNSARHRATFDDFI*
Ga0126376_1319195913300010359Tropical Forest SoilAFGLEKPTATTCQRNKDKGADEIQTNSTRHARKFNEFI*
Ga0126378_1333250233300010361Tropical Forest SoilGELKKSAAATRQRDKDDGADEVQTNSTRHPHTFDELP*
Ga0134126_1105528213300010396Terrestrial SoilLGSPRCALLGLKKPATATRKRNEDQGADEIQTNSARHPRNFNEFI*
Ga0126345_122229013300010858Boreal Forest SoilLRGLKQTATTTRQRNKDEGADEIQTNSARHPRMFNEYI*
Ga0137391_1113939013300011270Vadose Zone SoilRRLEKSAAAARQRDKDEGADQIQTNSARHPRRFDQFI*
Ga0137463_106378033300011444SoilDLGLGPPWFALGGLKKSAAAARQRNEDEGADEIQTNSARHGGTFDEFI*
Ga0137389_1065575033300012096Vadose Zone SoilGDFGLGPPRFALRGLKKSTAAARQRDKDEGADEIQTNSARHSRTFDEFI*
Ga0137389_1084181613300012096Vadose Zone SoilGDFGLGPPRFALRGLKKSTAAARQRDKDEGADEIQTNSARHPRTFDEFI*
Ga0137388_1018456913300012189Vadose Zone SoilPRFALRGLKKSATATRQRDKDERADEIQTNSARHPRRIDEFL*
Ga0137388_1023522613300012189Vadose Zone SoilPRFALRGLKKSTAAARQRDKDEGADEIQTNSARHSRTFDEFI*
Ga0137388_1111789543300012189Vadose Zone SoilFALRGLKKSTAAARQRDKDEGADEIQTNSARHPRTFDEFI*
Ga0137364_1110099923300012198Vadose Zone SoilGLGPPRFALRGLKKSTAAARQRDKDEGADEIQTNSARHPRTFDEFI*
Ga0137399_1095040923300012203Vadose Zone SoilDFGLGPPRFALRGLKKSAAATRQRDKDEGADEIQTNSARHPRTFNEFI*
Ga0137362_1043164733300012205Vadose Zone SoilGLGPPRFALRGLKKSTAAARQRDKDEGADEIQTNSARHPRRFDEFI*
Ga0137372_1041770713300012350Vadose Zone SoilCEFGLSPPRFALGGLKKSAAATRQRDKDEGADQIQTNSTRHGGTFDEFI*
Ga0137386_1097057113300012351Vadose Zone SoilGFALGGLKETATAARQRDKDDGADEIQTNSARHPRRFGDFT*
Ga0137385_1075094243300012359Vadose Zone SoilGPPRFALRGLKKSTAAARQRDKDEGADEIQTNSARHPRRFDEFI*
Ga0137390_1059122533300012363Vadose Zone SoilPRFALRGLKKSAAATRQRDKDEGADEIQTNSARHPRTFNEFI*
Ga0137390_1068796713300012363Vadose Zone SoilPPRFALRGLKKSTAAARQRDKDEGADEIQTNSARHPRTFDEFI*
Ga0137358_1011560613300012582Vadose Zone SoilPPRFALLGLKKSAPTTRQRDKDEGADEIQANSARHPRNFNEFI*
Ga0137358_1049283533300012582Vadose Zone SoilAFLDRAGFQTCHLGLGPPRLALGGLKKSAAAARQRNKDEGADEIQTNSARHRGTFDEFI*
Ga0137398_1096802733300012683Vadose Zone SoilACDFGLGPPRFTLRGLKKSAAATRQRDKDEGADEVQANSARHPRTFVQFI*
Ga0157284_1007093323300012893SoilGPPWFALGGLKKSASAARQRNKDEGADEIQTNSARHARNFNEFI*
Ga0157283_1018508723300012907SoilDRSGLQACNLGLGPPRFTLGGLKQSAAATRQGDKDEGADEIQTNSARHARNFNEFI*
Ga0137396_1049007833300012918Vadose Zone SoilLGPPRFALRGLKKSAAATRQRNKDEGADEIQTNSARHPRTFNEFI*
Ga0137359_1084313823300012923Vadose Zone SoilVLLDGAGLQAGDFGLGPPRFALRGLKKSATATRQRDKDEAADQIQTNSARHPRRFDEFI*
Ga0137359_1154077033300012923Vadose Zone SoilGLQARDFGLGPPRFTLRGLKKSAAATRQRDKDEGAEEAQANSARHPRRFDQFI*
Ga0137413_1152222813300012924Vadose Zone SoilLRGLKKSATATHQRDKDQGADQIQTNSARHPRTFNEFI*
Ga0137416_1224144123300012927Vadose Zone SoilFLDRTRLQACDLGLGPPRFALGGQKSATATRQGAKDEGADEIQTNSTRHRRRFGEFI*
Ga0137404_1001945913300012929Vadose Zone SoilLGPPRLTFFGKKSATAACKRDKDEGADEIQTNSARHPRNFNEFI*
Ga0137407_1161937623300012930Vadose Zone SoilLLGLKKAAAATCQRDKDEAADQIQANAARHPRNFNEFI*
Ga0164298_1101731813300012955SoilLRGLKKSTAAARQRDKDEGADEIQTNSARHSRTFDEFI*
Ga0164301_1133343133300012960SoilCHLVHGPPGFAHGALKKSAAAARQRNKDEGAYEIQTNSARHGGTFDEFI*
Ga0164302_1064025333300012961SoilGLGPPRFALGLEKAAAATRQRDKDDGADEIQTNSTRHGRRFGEFT*
Ga0164302_1082112533300012961SoilSGFQTGDLGLGPPRLALGGLEKSAAAACQRNKDEGADEIQTNSARHPRRFGEFI*
Ga0164308_1032427523300012985SoilRGLKKSTAAARQRDKDEGADEIQTNSARHPRTFDEFI*
Ga0164306_1068150613300012988SoilGLQASEFGLGPPRFALGGHKTAPATRQRSKDDGADQIQTNSARHPRNFDQFI*
Ga0157362_125414913300012998Fungus GardenLEKTTAATCQRNKDKGADEIQTNSTRHPRKFGEFI*
Ga0157374_1208495833300013296Miscanthus RhizosphereALRGLKKAAATTCQRNKDKGADQDQTNSVRHPRTLVEFI*
Ga0163163_1156974513300014325Switchgrass RhizosphereLGLGPPWFALGGLKKSAAAARQRNKDEGADEIQTNSARHGGTFDEFI*
Ga0157380_1234316933300014326Switchgrass RhizosphereFALRELKKSAAAARQRDKDEGADEIQTNSARHPRTFNEFI*
Ga0181522_1027654913300014657BogPRLALFGKKTATATRERYKDEGADEIQTNSARHAENFNEFI*
Ga0167638_103438313300015197Glacier Forefield SoilPPRFALGRLKKSATATRQRDKDEGADQIETNSARHPRTFDQFI*
Ga0173480_1023969313300015200SoilPPWFALGGLKKPAAAARQRNKDEGADEIQTNSARHGGTFDEFI*
Ga0137412_1056937733300015242Vadose Zone SoilDRAGFQARDLGLGPPRFPLRGLKKSATATHQRDKDQGADQIQTNSARHPRTFNEFI*
Ga0132256_10126364313300015372Arabidopsis RhizosphereCDLGLGSPRLPLGLEKSTAATRQRDKDEGADEIQTNSARHGGTFDEFI*
Ga0132255_10029534143300015374Arabidopsis RhizosphereLALGLEESTATACQRNKDKGADEIQTNSARHPRKFGEFI*
Ga0187782_1027827033300017975Tropical PeatlandLGLEPSTTAACQRNKDDGADEIQTNSARHARTFDQFI
Ga0137408_126174913300019789Vadose Zone SoilISAACDFSLGPPRLTFFGKKSATAACKRDKDEGADEIQTNSARHPRNFNEFI
Ga0193725_111082323300019883SoilHRAGLQARDFGLGPPWFALRGEKSAAAARQRDEDEGADEIQTNSARHPRRFDEFI
Ga0210403_1012368243300020580SoilGLKKSATATHQRDKDEGADEIQTNSARHPRNLNQFI
Ga0210405_1014226043300021171SoilLGPPWFALRGLKKSAAAASQRDKDEGADEIQTNSARHPCRFDEFI
Ga0210396_1044145123300021180SoilFFGKKSATAACKRDKDEGADEIQTNSARHPRNFNEFI
Ga0210397_1115662633300021403SoilGEKSAAATCQRNKDEAADQIPANAPRHPRRFNDFI
Ga0210389_1007395753300021404SoilLTLLGKKSAAATRQRYKDEGADEIPTNSARHAENFNEFI
Ga0207929_105555233300025505Arctic Peat SoilGGLKKSAAAARQRDKDEGADEIQTNSARHPRRFDEFI
Ga0208080_101341633300025553Arctic Peat SoilRFPLRGLKESAAAARQRDKDEGADQIQTNSARHPRTFDEFI
Ga0208080_102676143300025553Arctic Peat SoilALRGLKKSAAATRQRDKDEGADEIETNSARHPRTFNEFI
Ga0207647_1016252433300025904Corn RhizosphereGPPRFALGSLKQTATATSKRHKDKGADEIQTNSTRHGAEVLRI
Ga0207681_1162297623300025923Switchgrass RhizosphereGLEKAASATRKRNKDDGADEIQTNSARHARTFGEFT
Ga0207644_1061957513300025931Switchgrass RhizospherePPRFALGGLKSAAATRQGDKDEGADEIQTNSARHRRTFGEFI
Ga0207712_1190532613300025961Switchgrass RhizospherePWFPLGLEKSTAAACQRNKDKGADEIQTNSTRHPRKFGEFI
Ga0207675_10020992313300026118Switchgrass RhizosphereLGGLKSAAATRQGDKDEGADEIQTNSARHRRTFGEFI
Ga0207855_102751213300027039Tropical Forest SoilGLEKSVAAACQRNKDEGADEIQTNSTRHPRTFDEFI
Ga0209011_114423713300027678Forest SoilPPRFPLRGLKKSAAATRQRDKDQGADQIQTNSARHPRTFNEFI
Ga0208989_1001445653300027738Forest SoilRFAFLGLKKSTAASRQRDKDEGADEIQTNSARHPRTFGEFI
Ga0209074_1053705613300027787Agricultural SoilALGLEESTPAAGQRNKDKGADEIQTNSTRHPRKFGQFI
Ga0209048_1013830443300027902Freshwater Lake SedimentPRLALRGLKKSAAAARQRDKDEEADEIQTNSARHPRRFDEFI
Ga0209488_1072917113300027903Vadose Zone SoilGPPRFALRGRKKSAAATRQRDKDQGADEIQTNSARHPGNFNEFI
Ga0209488_1084590213300027903Vadose Zone SoilPRFALRGLKKSTAAARQRDKDEGADEIQTNSAHHPRTFDEFI
Ga0268266_1099340723300028379Switchgrass RhizosphereGGLKSAAATRQGDKDEGADEIQTNSARHRRTFGEFI
Ga0308309_1183127313300028906SoilGLKKSAAATRQRDKDDGADEIQTNSTRHPRTFGELP
Ga0302311_1013225243300030739PalsaFALLGLKQSATATRQRDEDEGADEIQTNSARHPRNIGQFI
Ga0311366_1162855933300030943FenLKKAATATRQRDKDEGADEIQTNSARHSRRFGEFI
Ga0302180_1009584013300031028PalsaLGPPRFALLGLKISAAAARQRNKDEGADEIQTNSARHPRNFNEFI
Ga0170824_11423451813300031231Forest SoilTARARRTEKKSAAATRKRDKDDRADEIQTNSARHRATFDDFI
Ga0307506_1007935513300031366SoilGLEKPTAAACQRNKDKGADEIQTNSTRHPRKFGEFI
Ga0318572_1016072433300031681SoilGLEKSVAAACQRNKDEGADEIQTNSTRHSRTFDEFI
Ga0310686_10978232433300031708SoilLALLGLKKSATAARQRDKDEGADEIQTNSARHARNFNEFI
Ga0310686_11733685233300031708SoilALLGLKKSATAARQRDKDEGADEIQTNSARHTRNFNEFI
Ga0302319_1005998113300031788BogGLGPPRFALRGLKESASAARERYKDEGADEIQTNSARHRRRFGEFI
Ga0310910_1140106813300031946SoilLKKSAAATGQRYEDDRADKIQTNSARHRATFDEFI
Ga0306926_1216828123300031954SoilARDFGLGPPWLALGLEESTPATCQRNKDDGADEVQTNSARHPRKFDQFI
Ga0335075_1094341433300032896SoilGAPRLALGGLEKSAAATRQRDEDDGADEIQTNSTRHSRRFGELP
Ga0335076_1016934413300032955SoilELGLGPPRLALSLEKSMTATRQRNKDEGADEIPTNSARHPRTFDDFA
Ga0334983_0528344_499_6543300034060FreshwaterFQARRFGLGPPRFTFGLEKAASATRERNEDDGADEIQTNSARHARTFGEFT

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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