Metagenome / Metatranscriptome Family F068065

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F068065
Family Type	Metagenome / Metatranscriptome
Number of Sequences	125
Average Sequence Length	68 residues
Representative Sequence	MSQPTSIQMLDAAIWKELGVEEVAESEAFYHALGTLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL
Number of Associated Samples	89
Number of Associated Scaffolds	125

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	17.60 %
% of genes near scaffold ends (potentially truncated)	32.80 %
% of genes from short scaffolds (< 2000 bps)	87.20 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (69.600 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (27.200 % of family members)
Environment Ontology (ENVO)	Unclassified (36.800 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (68.800 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 81.43% β-sheet: 0.00% Coil/Unstructured: 18.57%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 125 Family Scaffolds
PF01381	HTH_3	10.40
PF02782	FGGY_C	4.80
PF13030	DUF3891	2.40
PF01936	NYN	2.40
PF00589	Phage_integrase	2.40
PF00436	SSB	1.60
PF00083	Sugar_tr	1.60
PF05853	BKACE	1.60
PF13414	TPR_11	0.80
PF08220	HTH_DeoR	0.80
PF09982	DUF2219	0.80
PF01596	Methyltransf_3	0.80
PF13419	HAD_2	0.80
PF00561	Abhydrolase_1	0.80
PF12083	DUF3560	0.80

COG ID	Name	Functional Category	% Frequency in 125 Family Scaffolds
COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	General function prediction only [R]	2.40
COG0629	Single-stranded DNA-binding protein	Replication, recombination and repair [L]	1.60
COG2965	Primosomal replication protein N	Replication, recombination and repair [L]	1.60
COG3246	Uncharacterized conserved protein, DUF849 family	Function unknown [S]	1.60
COG2518	Protein-L-isoaspartate O-methyltransferase	Posttranslational modification, protein turnover, chaperones [O]	0.80
COG4122	tRNA 5-hydroxyU34 O-methylase TrmR/YrrM	Translation, ribosomal structure and biogenesis [J]	0.80
COG4123	tRNA1(Val) A37 N6-methylase TrmN6	Translation, ribosomal structure and biogenesis [J]	0.80

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.60 %
All Organisms	root	All Organisms	30.40 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.60 %
cellular organisms	root	All Organisms → cellular organisms	30.40 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.60 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	30.40 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.60 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.00 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	2.40 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.40 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.80 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.60 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3.20 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.40 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2.40 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.80 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.80 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.60 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2.40 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.40 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	1.60 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.80 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.80 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.60 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	2.40 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.40 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.60 %
Nitrosomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae	0.80 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.80 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.60 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.40 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.60 %
Niveispirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Niveispirillum	0.80 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	0.80 %
Skermanella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella	0.80 %
Nitrosospira	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosospira	0.80 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.80 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.60 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.40 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.60 %
unclassified Azospirillum	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → unclassified Azospirillum	0.80 %
Nitrosospira lacus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosospira → Nitrosospira lacus	0.80 %
Skermanella aerolata	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella → Skermanella aerolata	0.80 %
Niveispirillum irakense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Niveispirillum → Niveispirillum irakense	0.80 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.80 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.60 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.40 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.60 %
Azospirillum sp. Sh1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → unclassified Azospirillum → Azospirillum sp. Sh1	0.80 %
Nitrosospira lacus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosospira → Nitrosospira lacus	0.80 %
Skermanella aerolata	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella → Skermanella aerolata	0.80 %
Niveispirillum irakense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Niveispirillum → Niveispirillum irakense	0.80 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.80 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.80 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2166559005\|cont_contig03036	All Organisms → cellular organisms → Bacteria	2341	Open in IMG/M
2170459002\|FZY7DQ102JADSY	Not Available	548	Open in IMG/M
2170459005\|F1BAP7Q02GYV3M	Not Available	521	Open in IMG/M
2170459006\|GBPF9FW01COFFJ	Not Available	502	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101463484	Not Available	959	Open in IMG/M
3300000789\|JGI1027J11758_13079707	Not Available	948	Open in IMG/M
3300000789\|JGI1027J11758_13081749	Not Available	1036	Open in IMG/M
3300001593\|JGI12635J15846_10230867	Not Available	1201	Open in IMG/M
3300002245\|JGIcombinedJ26739_100500985	Not Available	1092	Open in IMG/M
3300002910\|JGI25615J43890_1093984	Not Available	532	Open in IMG/M
3300003218\|JGI26339J46600_10030618	All Organisms → cellular organisms → Bacteria	1516	Open in IMG/M
3300003219\|JGI26341J46601_10001787	All Organisms → cellular organisms → Bacteria	7034	Open in IMG/M
3300003219\|JGI26341J46601_10022251	Not Available	2074	Open in IMG/M
3300003368\|JGI26340J50214_10149519	Not Available	585	Open in IMG/M
3300003505\|JGIcombinedJ51221_10354313	Not Available	597	Open in IMG/M
3300004082\|Ga0062384_100813624	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300004091\|Ga0062387_100776610	Not Available	711	Open in IMG/M
3300004092\|Ga0062389_101138573	Not Available	966	Open in IMG/M
3300004092\|Ga0062389_101359046	Not Available	895	Open in IMG/M
3300005434\|Ga0070709_11274763	Not Available	592	Open in IMG/M
3300005437\|Ga0070710_10255102	Not Available	1129	Open in IMG/M
3300005437\|Ga0070710_10270081	Not Available	1099	Open in IMG/M
3300005439\|Ga0070711_100387124	Not Available	1132	Open in IMG/M
3300005536\|Ga0070697_101658014	Not Available	572	Open in IMG/M
3300006028\|Ga0070717_11329543	Not Available	653	Open in IMG/M
3300006047\|Ga0075024_100245069	Not Available	858	Open in IMG/M
3300006086\|Ga0075019_10736875	Not Available	625	Open in IMG/M
3300006173\|Ga0070716_100292310	Not Available	1129	Open in IMG/M
3300006175\|Ga0070712_100342042	Not Available	1222	Open in IMG/M
3300006175\|Ga0070712_100444356	All Organisms → cellular organisms → Bacteria	1079	Open in IMG/M
3300006175\|Ga0070712_101081479	Not Available	695	Open in IMG/M
3300006354\|Ga0075021_11016886	Not Available	541	Open in IMG/M
3300006893\|Ga0073928_10159686	All Organisms → cellular organisms → Bacteria	1809	Open in IMG/M
3300006893\|Ga0073928_10380880	Not Available	1037	Open in IMG/M
3300006893\|Ga0073928_11028949	Not Available	560	Open in IMG/M
3300009143\|Ga0099792_10426549	Not Available	816	Open in IMG/M
3300010339\|Ga0074046_10027145	All Organisms → cellular organisms → Bacteria	3932	Open in IMG/M
3300010373\|Ga0134128_12987761	Not Available	520	Open in IMG/M
3300010379\|Ga0136449_100172754	Not Available	4178	Open in IMG/M
3300010379\|Ga0136449_100692911	All Organisms → cellular organisms → Bacteria	1711	Open in IMG/M
3300010876\|Ga0126361_10246503	Not Available	516	Open in IMG/M
3300011120\|Ga0150983_11084587	Not Available	528	Open in IMG/M
3300011269\|Ga0137392_11172372	Not Available	626	Open in IMG/M
3300012096\|Ga0137389_10171316	Not Available	1792	Open in IMG/M
3300012202\|Ga0137363_10359436	Not Available	1207	Open in IMG/M
3300012202\|Ga0137363_10822689	Not Available	788	Open in IMG/M
3300012203\|Ga0137399_11675348	Not Available	524	Open in IMG/M
3300012205\|Ga0137362_10280352	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1441	Open in IMG/M
3300012361\|Ga0137360_10114920	All Organisms → cellular organisms → Bacteria	2084	Open in IMG/M
3300012361\|Ga0137360_10661565	All Organisms → cellular organisms → Bacteria	896	Open in IMG/M
3300012361\|Ga0137360_11034902	Not Available	709	Open in IMG/M
3300012582\|Ga0137358_10138043	Not Available	1659	Open in IMG/M
3300012582\|Ga0137358_10202838	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1353	Open in IMG/M
3300012986\|Ga0164304_10534086	Not Available	863	Open in IMG/M
3300012989\|Ga0164305_11765533	Not Available	557	Open in IMG/M
3300015242\|Ga0137412_10310335	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosospira → Nitrosospira lacus	1235	Open in IMG/M
3300020579\|Ga0210407_10078776	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Niveispirillum → Niveispirillum irakense	2481	Open in IMG/M
3300020580\|Ga0210403_10525961	Not Available	960	Open in IMG/M
3300020582\|Ga0210395_10060030	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2789	Open in IMG/M
3300020582\|Ga0210395_10082812	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2365	Open in IMG/M
3300020582\|Ga0210395_10148439	All Organisms → cellular organisms → Bacteria	1749	Open in IMG/M
3300020582\|Ga0210395_10481547	Not Available	934	Open in IMG/M
3300020583\|Ga0210401_11516617	Not Available	527	Open in IMG/M
3300021046\|Ga0215015_10596217	All Organisms → cellular organisms → Bacteria	1396	Open in IMG/M
3300021168\|Ga0210406_10389326	All Organisms → cellular organisms → Bacteria	1119	Open in IMG/M
3300021171\|Ga0210405_11321510	Not Available	528	Open in IMG/M
3300021178\|Ga0210408_10264630	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1370	Open in IMG/M
3300021180\|Ga0210396_11238893	Not Available	623	Open in IMG/M
3300021401\|Ga0210393_10097651	All Organisms → cellular organisms → Bacteria	2337	Open in IMG/M
3300021401\|Ga0210393_10476493	All Organisms → cellular organisms → Bacteria	1019	Open in IMG/M
3300021401\|Ga0210393_10665838	Not Available	849	Open in IMG/M
3300021401\|Ga0210393_11160599	Not Available	622	Open in IMG/M
3300021402\|Ga0210385_10049622	All Organisms → cellular organisms → Bacteria	2796	Open in IMG/M
3300021402\|Ga0210385_11444098	Not Available	526	Open in IMG/M
3300021405\|Ga0210387_10262359	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella → Skermanella aerolata	1513	Open in IMG/M
3300021405\|Ga0210387_10321586	All Organisms → cellular organisms → Bacteria	1363	Open in IMG/M
3300021405\|Ga0210387_10523320	Not Available	1054	Open in IMG/M
3300021405\|Ga0210387_11775124	Not Available	520	Open in IMG/M
3300021407\|Ga0210383_10472847	All Organisms → cellular organisms → Bacteria	1082	Open in IMG/M
3300021407\|Ga0210383_10794561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	810	Open in IMG/M
3300021407\|Ga0210383_11165004	Not Available	649	Open in IMG/M
3300021432\|Ga0210384_11422590	Not Available	599	Open in IMG/M
3300021474\|Ga0210390_10685531	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	855	Open in IMG/M
3300021474\|Ga0210390_11532017	Not Available	527	Open in IMG/M
3300021478\|Ga0210402_10507692	Not Available	1120	Open in IMG/M
3300021559\|Ga0210409_10629130	Not Available	943	Open in IMG/M
3300022532\|Ga0242655_10321822	Not Available	509	Open in IMG/M
3300022557\|Ga0212123_10147726	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → unclassified Azospirillum → Azospirillum sp. Sh1	1819	Open in IMG/M
3300022557\|Ga0212123_10564535	Not Available	725	Open in IMG/M
3300022726\|Ga0242654_10455461	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	500	Open in IMG/M
3300023046\|Ga0233356_1038086	Not Available	590	Open in IMG/M
3300024347\|Ga0179591_1007127	Not Available	1990	Open in IMG/M
3300025915\|Ga0207693_10053292	Not Available	3174	Open in IMG/M
3300025915\|Ga0207693_10425403	All Organisms → cellular organisms → Bacteria	1038	Open in IMG/M
3300025939\|Ga0207665_10300144	Not Available	1200	Open in IMG/M
3300026475\|Ga0257147_1049834	Not Available	624	Open in IMG/M
3300026489\|Ga0257160_1028849	Not Available	910	Open in IMG/M
3300026551\|Ga0209648_10234635	Not Available	1371	Open in IMG/M
3300027172\|Ga0208098_1023895	Not Available	615	Open in IMG/M
3300027516\|Ga0207761_1060444	Not Available	736	Open in IMG/M
3300027537\|Ga0209419_1070418	Not Available	688	Open in IMG/M
3300027610\|Ga0209528_1061791	Not Available	829	Open in IMG/M
3300027667\|Ga0209009_1073476	Not Available	861	Open in IMG/M
3300027667\|Ga0209009_1098011	Not Available	744	Open in IMG/M
3300027698\|Ga0209446_1032462	Not Available	1311	Open in IMG/M
3300027698\|Ga0209446_1107636	Not Available	716	Open in IMG/M
3300027701\|Ga0209447_10113570	Not Available	745	Open in IMG/M
3300027767\|Ga0209655_10301307	Not Available	517	Open in IMG/M
3300027783\|Ga0209448_10021005	Not Available	2151	Open in IMG/M
3300027812\|Ga0209656_10005283	All Organisms → cellular organisms → Bacteria	8296	Open in IMG/M
3300027812\|Ga0209656_10009787	All Organisms → cellular organisms → Bacteria	6060	Open in IMG/M
3300027812\|Ga0209656_10078805	All Organisms → cellular organisms → Bacteria	1777	Open in IMG/M
3300027812\|Ga0209656_10265562	Not Available	805	Open in IMG/M
3300027824\|Ga0209040_10285017	All Organisms → cellular organisms → Bacteria	812	Open in IMG/M
3300027889\|Ga0209380_10156050	Not Available	1335	Open in IMG/M
3300028047\|Ga0209526_10422217	Not Available	882	Open in IMG/M
3300028047\|Ga0209526_10455435	All Organisms → cellular organisms → Bacteria	841	Open in IMG/M
3300028047\|Ga0209526_10644438	Not Available	673	Open in IMG/M
3300028906\|Ga0308309_10573397	Not Available	979	Open in IMG/M
3300030706\|Ga0310039_10350317	Not Available	551	Open in IMG/M
3300031231\|Ga0170824_106976156	Not Available	726	Open in IMG/M
3300031234\|Ga0302325_11005410	Not Available	1139	Open in IMG/M
3300031823\|Ga0307478_10624426	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	902	Open in IMG/M
3300032160\|Ga0311301_10359927	All Organisms → cellular organisms → Bacteria	2266	Open in IMG/M
3300032160\|Ga0311301_10651892	Not Available	1498	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.20%
Engineered	Engineered	0.80%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	78.40%
Aquatic	Environmental → Aquatic	20.80%
Modeled	Engineered → Modeled	0.80%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	77.60%
Freshwater	Environmental → Aquatic → Freshwater	14.40%
Thermal Springs	Environmental → Aquatic → Thermal Springs	4.00%
Sediment	Environmental → Aquatic → Sediment	2.40%
Peat	Environmental → Terrestrial → Peat	0.80%
Simulated Communities (Sequence Read Mixture)	Engineered → Modeled → Simulated Communities (Sequence Read Mixture)	0.80%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	54.40%
Loam	Environmental → Terrestrial → Soil → Loam	22.40%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	14.40%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	4.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.40%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.80%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.80%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified	0.80%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	28.80%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.20%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	14.40%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.40%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.40%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	4.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.40%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.80%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.80%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified	0.80%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	27.20%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	14.40%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.20%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	10.40%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	9.60%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	4.00%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.00%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.40%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.40%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.40%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	2.40%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.60%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.60%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.80%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.80%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.80%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.80%
Simulated	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated	0.80%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.80%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2166559005	Simulated microbial communities from Lyon, France	Engineered	Open in IMG/M
2170459002	Grass soil microbial communities from Rothamsted Park, UK - March 2009 direct MP BIO 1O1 lysis 0-21 cm	Environmental	Open in IMG/M
2170459005	Grass soil microbial communities from Rothamsted Park, UK - July 2009 direct MP BIO1O1 lysis 0-21cm	Environmental	Open in IMG/M
2170459006	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 0-10cm	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002910	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm	Environmental	Open in IMG/M
3300003218	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1	Environmental	Open in IMG/M
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023046	Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-SFM-MS	Environmental	Open in IMG/M
3300024347	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026475	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-A	Environmental	Open in IMG/M
3300026489	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-A	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027172	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF038 (SPAdes)	Environmental	Open in IMG/M
3300027516	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 34 (SPAdes)	Environmental	Open in IMG/M
3300027537	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027610	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027667	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027698	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027701	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030706	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG (v2)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
cont_0036.00000720	2166559005	Simulated	MSQPTSIQMLDTAIWKELGVEEVTESEAFYHALATLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL
E1_05425670	2170459002	Grass Soil	MSQPTSIQMLDTAIWKELGVEEVTESEAFYHALATLLSRWLLARSEYPEMEAIKLFAKVRAYVARCCAGEAR
E41_09613900	2170459005	Grass Soil	DTAIWKELGVEEVTESEAFYHALATLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL
L01_07513880	2170459006	Grass Soil	MSQPTSIQMLDTAIWKELDVEEVTESEAFYHALATLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL
INPhiseqgaiiFebDRAFT_1014634842	3300000364	Soil	SIQMLDTAIWKELGAEEVAESEAFYHALGTLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL*
JGI1027J11758_130797071	3300000789	Soil	MSQPTSIQMLDTAIWKELGVEEVAESEAFYHALATLLSRWLLARPEYPEMEAIKLFAKVRAYVAQPERFL*
JGI1027J11758_130817492	3300000789	Soil	MSQPTSTQLLDHAIWTELGSRNDAEAEAFYDALSTLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL*
JGI12635J15846_102308672	3300001593	Forest Soil	MSQLTSIQILDTAIWTELGKQEDAEAEAFYNALGTLLSRWLIARSDYPEMEAIKLFAKVRAYVAKPERFL*
JGIcombinedJ26739_1005009852	3300002245	Forest Soil	MNQPTSIQMLDAAIWQELGGEKANDAEVVYHTLGTLLSRWLLARSDYPEMEAVKLFAKVRAYVAQPERFL*
JGI25615J43890_10939842	3300002910	Grasslands Soil	MSQPTSIQMLDTAIWKELGVEEVTESEAFYHALATLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL*
JGI26339J46600_100306183	3300003218	Bog Forest Soil	MSQPTSIQMLDAAIWKELGXEEVAESEAFYHALGTLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL*
JGI26341J46601_100017879	3300003219	Bog Forest Soil	MSQPTSIQMLDAAIWKELAAEEVAQSEAFYDALATLLSRWLLARSEYSEMEAIKLFAKVRAYVANPERFL*
JGI26341J46601_100222514	3300003219	Bog Forest Soil	MSQPTSIQMLDAAIWKELGAEEVAESEAFYHALGTLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL*
JGI26340J50214_101495191	3300003368	Bog Forest Soil	MSQPTSIQILDTAIWKELAAEEVAESEAFYDALATLLSRWLLARSEYSEMEAIKLFAKVR
JGIcombinedJ51221_103543131	3300003505	Forest Soil	MSQPTSTQLLDHAIWTELGSRNDAEAEAFYDALSTLLSRWLLARSDYPEMEALRLFAKVRAYVATPERFL*
Ga0062384_1008136243	3300004082	Bog Forest Soil	QPTSIQMLDVAIWKELGAEEVAESEAFYHALGTLLSRWLLARSEYPEMEAIKLFAKVRAYVVNPEGFL*
Ga0062387_1007766102	3300004091	Bog Forest Soil	MLDAAIWKELGVEEVTESDAFYDALGTLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL*
Ga0062389_1011385731	3300004092	Bog Forest Soil	RPSDGTAPEMSQPTSIQMLDAAIWKELAAEEVAQSEAFYDALATLLSRWLLARSEYSEMEAIKLFAKVRAYVANPERFL*
Ga0062389_1013590461	3300004092	Bog Forest Soil	AAIWQELGGEKAHDAEAVYDTLSTLLSRWLLARSGYPEMEAIKLFAKVRANVAQPERFL*
Ga0070709_112747631	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MNQPTSIQMLDAAIWQELGEEKAHDAEAVYHTLGTLLSRWLLARSDYPEMEAIKLFAKVRAYVAQP
Ga0070710_102551021	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MNQPTSIQMIDAAIWQELGGEKANDAEAVYHTLGTLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL*
Ga0070710_102700812	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MSQPTSIQMLDTAIWKELGVEEVAESEAFYHALATLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL*
Ga0070711_1003871241	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MNQPTSIQMLDAAIWQELGGEKAHDAEAVYHTLGTLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL*
Ga0070697_1016580141	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MSQPTSIQMLDTAIWKELGVEEVAESEAFYHALATLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL*T
Ga0070717_113295431	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MSQPTSTQLLDHAIWTELGSRNDAEAEAFYDALSTLLSRWLLARSDYPEMEAIKLFAKVRAYVAQPERFL*
Ga0075024_1002450692	3300006047	Watersheds	MSQPTSTQLLDHAIWTELGSRNDTEAEAFFDALSTLLSRWLLARSDYPEMEALRLFAKVRAYVATPERFL*
Ga0075019_107368752	3300006086	Watersheds	MSQPTSIQMLDAAIWKELGTEEVAASEAFYHALGTLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL*
Ga0070716_1002923101	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MLDTAIWKELGVEEVAESEAFYHALATLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL*
Ga0070712_1003420423	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MSQPSSTQLLDHAIWTELGSRNDAEAEAFYDALSTLLSRWLLARSDYPEMEALRLFAKVRAYVATPERFL*
Ga0070712_1004443562	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MNLLTSIQMLDAAIWQELGGEKAHDAEAVYHTLGTLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL*
Ga0070712_1010814792	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MNQPTSIQMIDAAIWQELGGEKANDAEAVYHTLGTLLSRWLLARSEYPEMEAIKLFAKVRAYVAEPDRFL*
Ga0075021_110168861	3300006354	Watersheds	MSQPTSIQMLDTAIWKELGVEEVAESEAFYHALGTLLSRWLLSRSEYPEMEAIKLFAKVRAYVAQPERFL*
Ga0073928_101596862	3300006893	Iron-Sulfur Acid Spring	MSQPTSIQMLDVAICKELGAEEVAESEAFYHALGTLLSRWLLARSEYPEMEAIKPFAKVRAYVVNPERFL*
Ga0073928_103808802	3300006893	Iron-Sulfur Acid Spring	MLDAAIWKELGVEEVAESEAFYDALATLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL*
Ga0073928_110289491	3300006893	Iron-Sulfur Acid Spring	MSQPTSIQMLDTAIWKELGIEEVAESEAFYHALGTLLSRWLLARSDYPEMEAIKLFAEVRAYVAQPER
Ga0099792_104265491	3300009143	Vadose Zone Soil	RPSDGTAPEMSQPTSIQMLDTAILKELGVEEVAESEAFYHALATLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL*
Ga0074046_100271455	3300010339	Bog Forest Soil	MSQPTSIQILDTAIWKELAAEEVAESEAFYDALATLLSRWLLARSEYSEMEAIKLFAKVRAYVANPERFL*
Ga0134128_129877612	3300010373	Terrestrial Soil	SNRRPPKKMSQPTSTQLLDHAIWTELGSRNDAEAEAFYDALSTLLSRWLLARSDYPEMEALRLFAKVRAYVATPERFL*
Ga0136449_1001727545	3300010379	Peatlands Soil	MSELTSVQLLDAAIWKELDREKITDTETFYHALATLLSRWLLARSEFPEMESIKLFAKVRAYVSNRECFL*
Ga0136449_1006929113	3300010379	Peatlands Soil	MLDAAIWKELAAEEVAESEAFYDALATLLSRWLLARSEYSEMEAIKLFAKVRAYVANPERFL*
Ga0126361_102465032	3300010876	Boreal Forest Soil	MSQPTSTQLLDHAIWTELGSRNDAEAEAFYDALSTLLSRWLLARSNYPEMEALRLFAKVRAYVATPERFL*
Ga0150983_110845872	3300011120	Forest Soil	TSIQMLDTAIWKELGVEEVTESEAFYHALATLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL*
Ga0137392_111723722	3300011269	Vadose Zone Soil	MSQPTSIQMLDAAIWKELGAEEVAESEAFYHALGTLLSRWLLARSEYPEMEAIKLFANVRAYVAQPERFL*
Ga0137389_101713163	3300012096	Vadose Zone Soil	MSQPTSIQMLDTAIWKELGVEEVAESEAFYVALATLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL*
Ga0137363_103594362	3300012202	Vadose Zone Soil	MSQPTSIQMLDAAIWKELGAEEVPESEAFYHALGTLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL*
Ga0137363_108226892	3300012202	Vadose Zone Soil	MLDAAIWKELGVEEVAESEAFYHALATLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL*
Ga0137399_116753482	3300012203	Vadose Zone Soil	MSQPTSIQMLDAAIWKELGVEEVPESEAFYDALATLLSRWLLARSEYPEMEAIKLFA
Ga0137362_102803523	3300012205	Vadose Zone Soil	MLDAAIWKELGVEEVAESEAFYHALGTLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL*
Ga0137360_101149202	3300012361	Vadose Zone Soil	MLDAAIWKELGAEEVPESEAFYHALGTLLSRWLLARSEYPEMEAIKLFAEVRAYVAQPERFL*
Ga0137360_106615651	3300012361	Vadose Zone Soil	EMSQPTSIQMLDTAIWKELGVEEVAESEAFYHALATLLSRWLLARSEYPEMEAIKLFAKVRVYVAQPEHFL*
Ga0137360_110349021	3300012361	Vadose Zone Soil	KRPSDGTASEMSQPTSIQMLDTAIWKELGVEEVTESEAFYHALATLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL*
Ga0137358_101380432	3300012582	Vadose Zone Soil	MSQPTSIQMLDAAIWKELGVEEVAESEAFYHALGTLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL*
Ga0137358_102028381	3300012582	Vadose Zone Soil	LGVEEVTESEAFYHALATLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL*
Ga0164304_105340862	3300012986	Soil	MSQPTSIQMLDTAIWKELGVEEVAQSEAFYHALATLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL*
Ga0164305_117655332	3300012989	Soil	MSKLTSIQLLDMAIGTELGTAKEAEAEAYFHALSTLLSRWLLARSDYPEMEAIQLFAKVRAYVAQPERFL*
Ga0137412_103103351	3300015242	Vadose Zone Soil	HRENPRKISFRSSNRRPPKKMSQPTSTQLLDHAIWTELGSRNDAEAEAFYDALSTLLSRWLLARSDYPEMEALRLFAKVRAYVATPERFL*
Ga0210407_100787763	3300020579	Soil	MLDAAIWKELGVEEVTESDAFYDALGTLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL
Ga0210403_105259612	3300020580	Soil	MNQPTSIQILDAAIWQELGGEKANDAEAVYHTLGTLLSRWLLARSDYPEMEAIKLFAKVRAYVAQPERFL
Ga0210395_100600301	3300020582	Soil	MRQPTSIQMLDAAIWKELGVEEVTESDAFYDALGTLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL
Ga0210395_100828122	3300020582	Soil	QRMNQPTSIQMIDAAIWQELGGEKANDAEAVYHALGTLLSRWLLARSDYPEMEAIKLFAKVRAYVAQPERFL
Ga0210395_101484392	3300020582	Soil	MNQPTSIQMIDAAIWQELGGEKAHDTEAVYHTLGTLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL
Ga0210395_104815472	3300020582	Soil	MNQPTSIQMLDAAIWQELGGEKANNAEAVYHTLGTLLSRWLLARSDYPEMEAIKLFAKVRAYVAQPERFL
Ga0210401_115166172	3300020583	Soil	TASEMSQPTSIQMLDTAIWKELGVEEVTESEAFYHALATLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL
Ga0215015_105962175	3300021046	Soil	LDAAIWKELGAEEVAESEDFYHALGTLLSRWLLARSEYPEMEAIKLFANVRAYVAQPERF
Ga0210406_103893262	3300021168	Soil	PVVPQRMNQPTSIQMIDAAIWQELGGEKANDAEAVYHTLGTLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL
Ga0210405_113215102	3300021171	Soil	MSQPTSTQLLDHAIWTELGSRNDAEAEAFYDALSTLLSRWLLARSDYPEMEALRLFAKVRAPPLP
Ga0210408_102646302	3300021178	Soil	MLDTAIWKELGVEEVTESEAFYHALATLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL
Ga0210396_112388932	3300021180	Soil	MLDAAIWKELGIEEVSQSEAFYDALGTLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL
Ga0210393_100976512	3300021401	Soil	MNQPTSIQMIDAAIWQELGGEKAHDAEAVYHTLGTLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL
Ga0210393_104764931	3300021401	Soil	MIDTAIWQELGGEKANDAEAVYHALGTLLSRWLLARSDYPEMEAIKLFAKVRAYVAQPERFL
Ga0210393_106658382	3300021401	Soil	MSQPTSIQMLDAAIWQELGGEKANNAEAVYHTLGTLLSRWLLARSDYPEMEAIKLFAKVRAYVAQPERFL
Ga0210393_111605992	3300021401	Soil	MLDAAIWKELGVEEVSQSEAFYDALGTLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL
Ga0210385_100496222	3300021402	Soil	MIDAAIWQELGGEKANDAEAVYHALGTLLSRWLLARSDYPEMEAIKLFAKVRAYVAQPERFL
Ga0210385_114440981	3300021402	Soil	MSQPTSIQMLDTAILKELGVEEVTESEAFYHALATLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL
Ga0210387_102623592	3300021405	Soil	MNQPTSIQMLDAAIWQELGGENAHDAEAVYHTLGALLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL
Ga0210387_103215861	3300021405	Soil	MSQPTSIQMLDAAIWKELGVEEVSQSEAFYDALGTLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPE
Ga0210387_105233202	3300021405	Soil	MIDAAIWQELGGEKANDAEAVYHALGTLLSRWLLARSDYPEMEAIKLFAKVRAYVAQPER
Ga0210387_117751241	3300021405	Soil	MSQPTSIQMLDTAIWKELGVEEVTESEAFYHALATLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPDRFL
Ga0210383_104728472	3300021407	Soil	MSQPTSIQMLDAAIWKELGIEEVSQSEAFYDALGTLLSRWLLARSEYPEMEAIKLFAKVR
Ga0210383_107945612	3300021407	Soil	LDAAIWKELGVEEVSQSEAFYDALGTLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERF
Ga0210383_111650041	3300021407	Soil	MIDAAIWQELGGEKAHDAEAVYHTLGTLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL
Ga0210384_114225901	3300021432	Soil	LGGEKAHDSEAVYHTLGTLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL
Ga0210390_106855312	3300021474	Soil	MSQPTSIQMLDAAIWQELGGEKANNAEAVYHTLGTLLSRWLLARSDYPEMEAIKLFAKVRAHVAQPERFL
Ga0210390_115320172	3300021474	Soil	MIDAAIWQELGGEKAHDAEAVYHTLGTLLSRWLLARSDYPEMEAIKLFAKVRAYVAQPERFL
Ga0210402_105076922	3300021478	Soil	MNQPTSIQMLDAAIWQELGGEKANDAEAVYHTLGTLLSRWLLARSDYPEMEAIKLFAKVRAYVAQPERFL
Ga0210409_106291303	3300021559	Soil	MSQPTSTQLLDHAIWTELGSRNDAEAEAFYDALSTLLSRWLLARSDYPEMEALRLFAKVRASPLPGA
Ga0242655_103218222	3300022532	Soil	MSQPTSTQLLDHAIWTELGSRNDAEAEAFYDALSTLLSRWLLARSDYPEMEALRLFAKVRAYV
Ga0212123_101477265	3300022557	Iron-Sulfur Acid Spring	MSQPTSIQMLDTAIWKELGIEEVAESEAFYHALGTLLSRWLLARSDYPEMEAIKLFAEVRAYVAQPERFL
Ga0212123_105645351	3300022557	Iron-Sulfur Acid Spring	MSQPTGIQMLDAAIWKELGVEEVAESEAFYDALATLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL
Ga0242654_104554611	3300022726	Soil	EMSQPTSIQMLDTAIWKELGVEEVTESEAFYHALATLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL
Ga0233356_10380862	3300023046	Soil	KELGVEEVTESEAFYHALATLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL
Ga0179591_10071271	3300024347	Vadose Zone Soil	MNQPTSIQMIDAAIWQELGGEKANDAEAVYHTLGTLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL
Ga0207693_100532921	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MSQPSSTQLLDHAIWTELGSRNDAEAEAFYDALSTLLSRWLLARSDYPEMEALRLFAKVRAYVATPERFL
Ga0207693_104254032	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MLDAAIWQELGGEKAHDAEAVYHTLGTLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL
Ga0207665_103001443	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MSQPTSTQLLDHAIWTELGSRNDAEAEAFYDALSTLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL
Ga0257147_10498341	3300026475	Soil	WKELGVEEVTESEAFYHALATLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL
Ga0257160_10288492	3300026489	Soil	MSQPTSIQMLDTAISKELGVEEVAESEAFYHALATLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL
Ga0209648_102346353	3300026551	Grasslands Soil	MSQPTSIQMLDTAIWKELGVEEVAESEAFYDALATLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL
Ga0208098_10238951	3300027172	Forest Soil	MSQPTSIQMLDTAIWKELGVEEVAESEAFYHALATLLSRWLLARSEHPEMEAIKLFAKVRAYVSNPERFL
Ga0207761_10604441	3300027516	Tropical Forest Soil	MSQHTSIKMLDAAIWKELGAEEVAESEAFYHALGTLLFRWLLARSEYPELEAIKLFAKIRAYVAHPERFL
Ga0209419_10704182	3300027537	Forest Soil	MNQPTSIQMLDAAIWQELGGEKANDAEVVYHTLGTLLSRWLLARSDYPEMEAVKLFAKVRAYVAQPERFL
Ga0209528_10617912	3300027610	Forest Soil	MLDTAIWKELGVEEVAESEAFYHALTLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERF
Ga0209009_10734761	3300027667	Forest Soil	MSQPTSTQLLDHAIWTELGSRNDAEAEAFYDALSTLLSRWLLARSDYPEMEALRLFAKV
Ga0209009_10980111	3300027667	Forest Soil	MLDAAVWKELAAEEVAESEAFYDALATLLSRWLLARSEYSEMEAIKLFAKVRAYVAQPERFL
Ga0209446_10324622	3300027698	Bog Forest Soil	MSQPTSIQMLDAAIWKELGTEEVAESEAFYHALGTLLSRWLLARSEYPEMEAIKLFANVRAYVAQPERFL
Ga0209446_11076362	3300027698	Bog Forest Soil	KRPSDGTAPEMSQPTSIQMLDAAIWKELAAEEVAQSEAFYDALATLLSRWLLARSEYSEMEAIKLFAKVRAYVANPERFL
Ga0209447_101135702	3300027701	Bog Forest Soil	MSQPTSIQMLDVAIWKELGAEEVAESEAFYHALGTLLSRWLLARSEYPEMEAIKLFAKVRAYVVNPERFL
Ga0209655_103013072	3300027767	Bog Forest Soil	MNQPTSIQMLDAAIWQELGGEKAHDAEAVYHTLGTLLSRWLLARSDYPEMEAIKLFAKVRAYVAQPERFL
Ga0209448_100210054	3300027783	Bog Forest Soil	MSQPTSIQMLDAAIWKELGAEEVAESEAFYHALGTLLSRWLLARSEYPEMEAIKLFAKVRAYVVNPERFL
Ga0209656_100052837	3300027812	Bog Forest Soil	MSQPTSIQMLDAAIWKELAAEEVAQSEAFYDALATLLSRWLLARSEYSEMEAIKLFAKVRAYVANPERFL
Ga0209656_100097873	3300027812	Bog Forest Soil	MSQPTSIQMLDAAIWKELGAEEVAESEAFYHALGTLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL
Ga0209656_100788053	3300027812	Bog Forest Soil	MLDAAIWKELGAEEVAESEAFYHALGTLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL
Ga0209656_102655622	3300027812	Bog Forest Soil	MSQPTSIQILDTAIWKELAAEEVAESEAFYDALATLLSRWLLARSEYSEMEAIKLFAKVRAYVANPERFL
Ga0209040_102850173	3300027824	Bog Forest Soil	PHCTAPKMSQPTSIQMLDAAIWKELGAEEVAESEAFYHALGTLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL
Ga0209380_101560501	3300027889	Soil	MSQPTSIQMLDTAIWKELGVEEVTESDAFYDALGTLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL
Ga0209526_104222172	3300028047	Forest Soil	MSQLTSIQILDTAIWTELGKQEDAEAEAFYNALGTLLSRWLIARSDYPEMEAIKLFAKVRAYVAKPERFL
Ga0209526_104554353	3300028047	Forest Soil	HILQECAIWTKLGAQHDDDAEFEAFYRALGTLLSRWLLARSDYPEMEAIKLFAKVRSYVARPERFL
Ga0209526_106444381	3300028047	Forest Soil	MNQPTSIQMLDAAIWQELGGEKAHDAEAVYHTLGTLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL
Ga0308309_105733971	3300028906	Soil	MSQPTSIQMLDAAIWKELGVEEVSQSEAFYDALGTLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL
Ga0310039_103503171	3300030706	Peatlands Soil	AIWKELGVEEVAESEAFYHALATLLSRWLLARSEYPEMEAIKLFAKVRAYVAQPERFL
Ga0170824_1069761562	3300031231	Forest Soil	MLDAAIWQELGGEKAHDAEAVYHTLGTLLSRWLLARSDYPEMEAIKLFAKVRAYVAQPERFL
Ga0302325_110054101	3300031234	Palsa	MSQPTSTQLLDHAIWTELGSRNDAEAEAFYDALGTLISRWLLARSDYPEMEALRLFAKVRAYVAKPERFL
Ga0307478_106244262	3300031823	Hardwood Forest Soil	MSQPTSIQMLDTAIWKELGVEEVTESEAFYHALATLLSRWLLARSEYPEMEAIKLFAKVR
Ga0311301_103599275	3300032160	Peatlands Soil	MSQPTSIQMLDAAIWKELAAEEVAESEAFYDALATLLSRWLLARSEYSEMEAIKLFAKVRAYVANPERFL
Ga0311301_106518922	3300032160	Peatlands Soil	MSELTSVQLLDAAIWKELDREKITDTETFYHALATLLSRWLLARSEFPEMEAIKLFAKVRAYVSNRECFL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F068065

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences