NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F068070

Metagenome / Metatranscriptome Family F068070

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F068070
Family Type Metagenome / Metatranscriptome
Number of Sequences 125
Average Sequence Length 88 residues
Representative Sequence LPAFAQNLADPGRRVPESELKLDLPKRDATEEARSFAAKPPPPRAVDPGVCESARVNWQLACGAPYSYKSRSQLCNEAYTIYRDSCG
Number of Associated Samples 111
Number of Associated Scaffolds 125

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 16.80 %
% of genes near scaffold ends (potentially truncated) 40.00 %
% of genes from short scaffolds (< 2000 bps) 81.60 %
Associated GOLD sequencing projects 106
AlphaFold2 3D model prediction Yes
3D model pTM-score0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (74.400 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere
(11.200 % of family members)
Environment Ontology (ENVO) Unclassified
(26.400 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(43.200 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 38.26%    β-sheet: 0.00%    Coil/Unstructured: 61.74%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.42
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 125 Family Scaffolds
PF01258zf-dskA_traR 39.20
PF00575S1 16.80
PF01138RNase_PH 3.20
PF05235CHAD 2.40
PF16198TruB_C_2 1.60
PF03726PNPase 1.60
PF13419HAD_2 1.60
PF01928CYTH 1.60
PF14520HHH_5 0.80
PF11987IF-2 0.80
PF13460NAD_binding_10 0.80
PF13385Laminin_G_3 0.80
PF12681Glyoxalase_2 0.80

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 125 Family Scaffolds
COG1734RNA polymerase-binding transcription factor DksATranscription [K] 39.20
COG1185Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase)Translation, ribosomal structure and biogenesis [J] 4.80
COG0689Ribonuclease PHTranslation, ribosomal structure and biogenesis [J] 3.20
COG2123Exosome complex RNA-binding protein Rrp42, RNase PH superfamilyIntracellular trafficking, secretion, and vesicular transport [U] 3.20
COG3025Inorganic triphosphatase YgiF, contains CYTH and CHAD domainsInorganic ion transport and metabolism [P] 2.40
COG5607CHAD domain, binds inorganic polyphosphatesFunction unknown [S] 2.40

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms74.40 %
UnclassifiedrootN/A25.60 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2088090014|GPIPI_17380791All Organisms → cellular organisms → Bacteria1318Open in IMG/M
3300000364|INPhiseqgaiiFebDRAFT_100595761All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillales incertae sedis → Pelagibaculum → Pelagibaculum spongiae1878Open in IMG/M
3300001686|C688J18823_10444181All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria836Open in IMG/M
3300002568|C688J35102_118977654Not Available621Open in IMG/M
3300002568|C688J35102_120905122All Organisms → cellular organisms → Bacteria → Proteobacteria2182Open in IMG/M
3300004081|Ga0063454_100205462All Organisms → cellular organisms → Bacteria → Proteobacteria1125Open in IMG/M
3300004114|Ga0062593_100320881All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Gallionellaceae → Candidatus Nitrotoga → unclassified Candidatus Nitrotoga → Candidatus Nitrotoga sp. M51334Open in IMG/M
3300004157|Ga0062590_100980606Not Available801Open in IMG/M
3300004480|Ga0062592_101646988Not Available622Open in IMG/M
3300004643|Ga0062591_100174486All Organisms → cellular organisms → Bacteria → Proteobacteria1539Open in IMG/M
3300005093|Ga0062594_100234234All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium1323Open in IMG/M
3300005294|Ga0065705_10266471All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1144Open in IMG/M
3300005295|Ga0065707_10223902Not Available1214Open in IMG/M
3300005295|Ga0065707_10627215Not Available675Open in IMG/M
3300005330|Ga0070690_100222294All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium1324Open in IMG/M
3300005332|Ga0066388_100815101All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1524Open in IMG/M
3300005332|Ga0066388_101353050All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1232Open in IMG/M
3300005334|Ga0068869_100487037All Organisms → cellular organisms → Bacteria → Proteobacteria1028Open in IMG/M
3300005335|Ga0070666_11035433Not Available609Open in IMG/M
3300005354|Ga0070675_100359985All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1292Open in IMG/M
3300005441|Ga0070700_101104084All Organisms → cellular organisms → Bacteria658Open in IMG/M
3300005457|Ga0070662_100872681Not Available767Open in IMG/M
3300005526|Ga0073909_10023636All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria2033Open in IMG/M
3300005713|Ga0066905_100035896All Organisms → cellular organisms → Bacteria2878Open in IMG/M
3300005842|Ga0068858_100063289All Organisms → cellular organisms → Bacteria → Proteobacteria3423Open in IMG/M
3300006049|Ga0075417_10209726All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria924Open in IMG/M
3300006058|Ga0075432_10366238Not Available614Open in IMG/M
3300006173|Ga0070716_100123339All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1626Open in IMG/M
3300006175|Ga0070712_100711116All Organisms → cellular organisms → Bacteria857Open in IMG/M
3300006196|Ga0075422_10360123All Organisms → cellular organisms → Bacteria636Open in IMG/M
3300006577|Ga0074050_11862631All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria674Open in IMG/M
3300006846|Ga0075430_101744654All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria511Open in IMG/M
3300006847|Ga0075431_100662575All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1023Open in IMG/M
3300006847|Ga0075431_101358666Not Available671Open in IMG/M
3300006853|Ga0075420_100364409All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1250Open in IMG/M
3300006854|Ga0075425_101444372All Organisms → cellular organisms → Bacteria778Open in IMG/M
3300006854|Ga0075425_102304340All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria598Open in IMG/M
3300006904|Ga0075424_102632850Not Available526Open in IMG/M
3300006914|Ga0075436_100043367All Organisms → cellular organisms → Bacteria → Proteobacteria3101Open in IMG/M
3300006953|Ga0074063_13911020All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria994Open in IMG/M
3300007076|Ga0075435_101469332Not Available598Open in IMG/M
3300007255|Ga0099791_10162853All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1045Open in IMG/M
3300009036|Ga0105244_10322616All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria713Open in IMG/M
3300009147|Ga0114129_10686565All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1317Open in IMG/M
3300009177|Ga0105248_12046633All Organisms → cellular organisms → Bacteria651Open in IMG/M
3300009551|Ga0105238_10575144All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1133Open in IMG/M
3300009553|Ga0105249_12051813All Organisms → cellular organisms → Bacteria645Open in IMG/M
3300010359|Ga0126376_11334474All Organisms → cellular organisms → Bacteria739Open in IMG/M
3300010360|Ga0126372_10499470All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1142Open in IMG/M
3300010397|Ga0134124_11361862Not Available734Open in IMG/M
3300010400|Ga0134122_10074235All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria2648Open in IMG/M
3300010403|Ga0134123_11867487Not Available656Open in IMG/M
3300011107|Ga0151490_1489033All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1050Open in IMG/M
3300011119|Ga0105246_10923739All Organisms → cellular organisms → Bacteria784Open in IMG/M
3300011332|Ga0126317_10618353All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria585Open in IMG/M
3300011434|Ga0137464_1005090All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria3417Open in IMG/M
3300011440|Ga0137433_1305743Not Available516Open in IMG/M
3300012212|Ga0150985_103589050All Organisms → cellular organisms → Bacteria634Open in IMG/M
3300012212|Ga0150985_111179280All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1151Open in IMG/M
3300012469|Ga0150984_101856307All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1029Open in IMG/M
3300012469|Ga0150984_116810980Not Available515Open in IMG/M
3300012469|Ga0150984_120475774Not Available856Open in IMG/M
3300012506|Ga0157324_1062726Not Available512Open in IMG/M
3300012515|Ga0157338_1033021Not Available670Open in IMG/M
3300012519|Ga0157352_1089900All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria528Open in IMG/M
3300012685|Ga0137397_10511954All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria894Open in IMG/M
3300012922|Ga0137394_10020457All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria5299Open in IMG/M
3300012948|Ga0126375_10318148All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1089Open in IMG/M
3300012958|Ga0164299_10944727All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria630Open in IMG/M
3300012960|Ga0164301_10011306All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria3623Open in IMG/M
3300012961|Ga0164302_10401727All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria935Open in IMG/M
3300012984|Ga0164309_10194407All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales1390Open in IMG/M
3300013296|Ga0157374_10684244All Organisms → cellular organisms → Bacteria → Proteobacteria1038Open in IMG/M
3300014745|Ga0157377_11056157Not Available619Open in IMG/M
3300015371|Ga0132258_10152616All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria5543Open in IMG/M
3300015371|Ga0132258_10731301All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria2492Open in IMG/M
3300015372|Ga0132256_100955936Not Available972Open in IMG/M
3300015372|Ga0132256_100975833Not Available963Open in IMG/M
3300015374|Ga0132255_100061876All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria4930Open in IMG/M
3300015374|Ga0132255_100602852All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales1624Open in IMG/M
3300018083|Ga0184628_10119932Not Available1360Open in IMG/M
3300024181|Ga0247693_1052171Not Available593Open in IMG/M
3300024186|Ga0247688_1004185All Organisms → cellular organisms → Bacteria → Proteobacteria2079Open in IMG/M
3300024187|Ga0247672_1000527All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria6180Open in IMG/M
3300024224|Ga0247673_1025901All Organisms → cellular organisms → Bacteria → Proteobacteria794Open in IMG/M
3300024249|Ga0247676_1090562All Organisms → cellular organisms → Bacteria509Open in IMG/M
3300024275|Ga0247674_1043208All Organisms → cellular organisms → Bacteria541Open in IMG/M
3300024284|Ga0247671_1031488All Organisms → cellular organisms → Bacteria807Open in IMG/M
3300024325|Ga0247678_1000170All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria15423Open in IMG/M
3300025903|Ga0207680_10796791Not Available677Open in IMG/M
3300025913|Ga0207695_11528552All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria548Open in IMG/M
3300026023|Ga0207677_10370440All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → environmental samples → uncultured beta proteobacterium1206Open in IMG/M
3300026095|Ga0207676_11806600Not Available610Open in IMG/M
3300027775|Ga0209177_10113257All Organisms → cellular organisms → Bacteria → Proteobacteria877Open in IMG/M
3300027821|Ga0209811_10018152All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales2288Open in IMG/M
3300027880|Ga0209481_10134653All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1213Open in IMG/M
3300028065|Ga0247685_1002630All Organisms → cellular organisms → Bacteria → Proteobacteria2486Open in IMG/M
3300028072|Ga0247675_1002822All Organisms → cellular organisms → Bacteria → Proteobacteria2256Open in IMG/M
3300028072|Ga0247675_1039027All Organisms → cellular organisms → Bacteria699Open in IMG/M
3300028138|Ga0247684_1005111All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria2052Open in IMG/M
3300028146|Ga0247682_1012293All Organisms → cellular organisms → Bacteria → Proteobacteria1479Open in IMG/M
3300028592|Ga0247822_10127705All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium BMS3Bbin121855Open in IMG/M
3300028596|Ga0247821_10360824Not Available899Open in IMG/M
3300028792|Ga0307504_10098767All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria926Open in IMG/M
3300031184|Ga0307499_10001291All Organisms → cellular organisms → Bacteria → Proteobacteria7520Open in IMG/M
3300031199|Ga0307495_10036122All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria940Open in IMG/M
3300031226|Ga0307497_10296056All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria740Open in IMG/M
3300031538|Ga0310888_11017184Not Available521Open in IMG/M
3300031562|Ga0310886_10116005All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1359Open in IMG/M
3300031720|Ga0307469_10426284All Organisms → cellular organisms → Bacteria → Proteobacteria1141Open in IMG/M
3300031740|Ga0307468_101111049Not Available705Open in IMG/M
3300031820|Ga0307473_10041229All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium BMS3Bbin122108Open in IMG/M
3300031847|Ga0310907_10710985Not Available556Open in IMG/M
3300031858|Ga0310892_10802081Not Available653Open in IMG/M
3300031908|Ga0310900_10358827All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1093Open in IMG/M
3300031908|Ga0310900_11374833All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria592Open in IMG/M
3300031943|Ga0310885_10556343Not Available631Open in IMG/M
3300032013|Ga0310906_10023975All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria2666Open in IMG/M
3300032075|Ga0310890_10335514Not Available1100Open in IMG/M
3300032205|Ga0307472_100228905All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1439Open in IMG/M
3300032205|Ga0307472_100681720All Organisms → cellular organisms → Bacteria921Open in IMG/M
3300033551|Ga0247830_10127789All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium BMS3Bbin121829Open in IMG/M
3300034149|Ga0364929_0001686All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria5162Open in IMG/M
3300034354|Ga0364943_0030988All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1704Open in IMG/M
3300034817|Ga0373948_0025532All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1159Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere11.20%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil10.40%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil9.60%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil6.40%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil4.00%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil4.00%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil3.20%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere3.20%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.40%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil2.40%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil2.40%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil2.40%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere2.40%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil2.40%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.40%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere2.40%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil1.60%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil1.60%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.60%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment1.60%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere1.60%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.60%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere1.60%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere1.60%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.60%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.60%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.60%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.60%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere1.60%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere1.60%
SoilEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil0.80%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.80%
Unplanted SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil0.80%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.80%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.80%
Rhizosphere SoilHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil0.80%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.80%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.80%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2088090014Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000364Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300001686Grasslands soil microbial communities from Hopland, California, USAEnvironmentalOpen in IMG/M
3300002568Grasslands soil microbial communities from Hopland, California, USA - 2EnvironmentalOpen in IMG/M
3300004081Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)EnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004157Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2EnvironmentalOpen in IMG/M
3300004480Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4EnvironmentalOpen in IMG/M
3300004643Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3EnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005294Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk SoilEnvironmentalOpen in IMG/M
3300005295Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3EnvironmentalOpen in IMG/M
3300005330Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaGEnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005334Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2Host-AssociatedOpen in IMG/M
3300005335Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaGHost-AssociatedOpen in IMG/M
3300005354Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaGHost-AssociatedOpen in IMG/M
3300005441Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaGEnvironmentalOpen in IMG/M
3300005457Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaGHost-AssociatedOpen in IMG/M
3300005526Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1EnvironmentalOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005842Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2Host-AssociatedOpen in IMG/M
3300006049Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1Host-AssociatedOpen in IMG/M
3300006058Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1Host-AssociatedOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006196Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1Host-AssociatedOpen in IMG/M
3300006577Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPA (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006846Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4Host-AssociatedOpen in IMG/M
3300006847Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5Host-AssociatedOpen in IMG/M
3300006853Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300006914Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5Host-AssociatedOpen in IMG/M
3300006953Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300007076Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4Host-AssociatedOpen in IMG/M
3300007255Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1EnvironmentalOpen in IMG/M
3300009036Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaGHost-AssociatedOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009177Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaGHost-AssociatedOpen in IMG/M
3300009551Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaGHost-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300011107Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAC (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300011119Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaGHost-AssociatedOpen in IMG/M
3300011332Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300011434Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT814_2EnvironmentalOpen in IMG/M
3300011440Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT840_2EnvironmentalOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012469Combined assembly of Soil carbon rhizosphereHost-AssociatedOpen in IMG/M
3300012506Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.6.old.040610Host-AssociatedOpen in IMG/M
3300012515Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.7.yng.070610Host-AssociatedOpen in IMG/M
3300012519Unplanted soil (control) microbial communities from North Carolina - M.Soil.7.yng.070610EnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300012958Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MGEnvironmentalOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300012961Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MGEnvironmentalOpen in IMG/M
3300012984Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MGEnvironmentalOpen in IMG/M
3300013296Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaGHost-AssociatedOpen in IMG/M
3300014745Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaGHost-AssociatedOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300018083Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1EnvironmentalOpen in IMG/M
3300024181Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK34EnvironmentalOpen in IMG/M
3300024186Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK29EnvironmentalOpen in IMG/M
3300024187Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK13EnvironmentalOpen in IMG/M
3300024224Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK14EnvironmentalOpen in IMG/M
3300024249Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK17EnvironmentalOpen in IMG/M
3300024275Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK15EnvironmentalOpen in IMG/M
3300024284Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK12EnvironmentalOpen in IMG/M
3300024325Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK19EnvironmentalOpen in IMG/M
3300025903Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025913Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026023Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026095Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300027775Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)EnvironmentalOpen in IMG/M
3300027821Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027880Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)Host-AssociatedOpen in IMG/M
3300028065Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK26EnvironmentalOpen in IMG/M
3300028072Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK16EnvironmentalOpen in IMG/M
3300028138Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK25EnvironmentalOpen in IMG/M
3300028146Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK23EnvironmentalOpen in IMG/M
3300028592Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30EnvironmentalOpen in IMG/M
3300028596Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14EnvironmentalOpen in IMG/M
3300028792Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_SEnvironmentalOpen in IMG/M
3300031184Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_SEnvironmentalOpen in IMG/M
3300031199Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_SEnvironmentalOpen in IMG/M
3300031226Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_SEnvironmentalOpen in IMG/M
3300031538Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1EnvironmentalOpen in IMG/M
3300031562Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300031847Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4EnvironmentalOpen in IMG/M
3300031858Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2EnvironmentalOpen in IMG/M
3300031908Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1EnvironmentalOpen in IMG/M
3300031943Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2EnvironmentalOpen in IMG/M
3300032013Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3EnvironmentalOpen in IMG/M
3300032075Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300033551Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5EnvironmentalOpen in IMG/M
3300034149Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17EnvironmentalOpen in IMG/M
3300034354Sediment microbial communities from East River floodplain, Colorado, United States - 23_s17EnvironmentalOpen in IMG/M
3300034817Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
GPIPI_016824302088090014SoilSAAAELVASHVAHLASNLMRVAALLAIVSLPAFAQDLPDPGRRXXXXXENELKLDLPKRDATEEARSHAVKPPPQRATDPRTCESARVNRELACGAPYSYKSRSQICTEAHAIYRGICG
INPhiseqgaiiFebDRAFT_10059576123300000364SoilMRVAALLAIVSLPAFAQDLPDPGRRVPENELKLDLPKRDATEEARSHAVKPPPQRATDPRTCESARVNRELACGAPYSYKSRSQICTEAHAIYRGICG*
C688J18823_1044418113300001686SoilVPENELRLELPKRDATEEPRSFAVKPPPPRAADPRVCESARVNRELACGAPYSCRSRSQICTETYAIYRDSCG*
C688J35102_11897765413300002568SoilVADPGRRVPENELRLELPKRDATEEARSYAVKPPPPRTFDPRVCESARVNRELGCGTPYSYKSRSQICTEAYAIYRDSCG*
C688J35102_12090512223300002568SoilVPENELRLELPKRDATEEPRSFAVKPPPPRAADPRVCESARVNRELACGAPYSYRSRSQICTETYAIYRDSCG*
Ga0063454_10020546233300004081SoilVADPGRRVPENELRLELPKRDATEEARSYAVKPPPPRALDPRVCESARVNRELACGAPYSYRSRSQICTEAYAVYRDSCG*
Ga0062593_10032088123300004114SoilVPENELKLDLPKRDATEEARSYAVKPPPPRVTDPRTCESARVNRELACGAPYSYKSRSQICTEAYTIYRDSCG*
Ga0062590_10098060623300004157SoilELKLDLPKRDATEEARSFAAKPPPPRAVDPGVCESARVNWQLACGAPYSYKSRSLSCTEAHAIYRDSCG*
Ga0062592_10164698813300004480SoilMFPARLRVATLLAVVSLPAFAQNLPDPARRVPENELQLDLPKRDATEEARSYAVKPPPPRATDPRVCESARVNWQLACGAPYSYKSRSQICTEAYAIYRDSCG*
Ga0062591_10017448623300004643SoilLPAFAQNLADPGRRVPESELKLDLPKRDATEEARSFAAKPPPPRAVDPGVCESARVNWQLACGAPYSYKSRSLSCTEAHAIYRDSCG*
Ga0062594_10023423413300005093SoilVPESELKLDLPKRDATEEARSHAVKPLPQRAVDPRVCESARVNWQTACGASPYSYKSRSQLCNEAYTIYRDSCG*
Ga0065705_1026647123300005294Switchgrass RhizosphereVPENELRLDLPKRDATEEARSHAVKPPPPRAVDPRVCESARVNWQLACGGTPYSYKSRSLNCTEAHAIYRDSCG*
Ga0065707_1022390213300005295Switchgrass RhizosphereKRDATEEARSHAVKPPPPRAVDPRVCESARVNWQNACGTPYSYRSRSQVCNEAYAIYRDSCG*
Ga0065707_1062721513300005295Switchgrass RhizosphereRVPENELRLDLPKRDATEEARSYAVKPPPPRVTDPRTCESARVNRELACGAPYSYKSRSQICTEAYTIYRDSCG*
Ga0070690_10022229423300005330Switchgrass RhizospherePGRRVPESELKLDLPKRDATEEARSHAVKPLPQRAVDPRVCESARVNWQTACGASPYSYKSRSQLCNEAYTIYRDSCG*
Ga0066388_10081510123300005332Tropical Forest SoilLAQDLPDPGRRVPENELKLDLPKRDATEEARSYAVKPPPQRAVDPRVCESARVNWQNACGGSPYSYKSRSQLCNEAYVVYRDSCG*
Ga0066388_10135305013300005332Tropical Forest SoilVPENELLEAPKRDATEEARSHAVKPPPKSAVDPRACERARVNQELVCGAPYSYKSRSQICSEAYAIYRDSCG*
Ga0068869_10048703723300005334Miscanthus RhizosphereVPENELKLDLPKRDATEEARSHAVKPLPQRAVDPRVCESARVNWQTACGASPYSYKSRSQLCNEAYTIYRDSCG*
Ga0070666_1103543323300005335Switchgrass RhizosphereDPGRRVPESELKLDLPKRDATEEARSFAAKPPPPRAVDPGVCESARVNWQLACGAPYSYKSRSLSCTEAHAIYRDSCG*
Ga0070675_10035998563300005354Miscanthus RhizosphereLPAFAQNLADPGRRVPESELKLDLPKRDATEEARSFAAKPPPPRAVDPGVCESARVNWQLACGAPYSYKSRSLSCTEAHAIY
Ga0070700_10110408413300005441Corn, Switchgrass And Miscanthus RhizospherePGRRVPESELKLDLPKRDATEEARSHAVKPLPQRAVDPRVCESARVNWQTACGASPYSYKSRSQLCNEAYTIYRDSGG*
Ga0070662_10087268123300005457Corn RhizosphereRVPESELKLDLPKRDATEEARSFAAKPPPPRAVDPGVCESARVNWQLACGAPYSYKSRSLSCTEAHAIYRDSCG*
Ga0073909_1002363663300005526Surface SoilMRVAILLVIVSLPALAQNLADPGRRVPENELRLDLPKRDATEEARSHAMKPPPPRAVDPRTCESARVNWQLACGAPHSYRSRSQICTEAYTIYRDSCE*
Ga0066905_10003589663300005713Tropical Forest SoilVPENELQLDPPKRDATEEARSYAVKPPPPRAIDPRACESARVNRELACGTPYSYKSRSVICTEAYAIYRDSCG*
Ga0068858_10006328933300005842Switchgrass RhizosphereDPGRRVPESELKLDLPKRDATEEARSHAVKPLPQRAVDPRVCESARVNWQTACGASPYSYKSRSQLCNEAYTIYRDSCG*
Ga0075417_1020972623300006049Populus RhizosphereVSSATRLRVAILLLVVSLPAFAQGLAEPGRRVPENELRLDLPKRDATEEARSHAVKPPPPRAVDPRVCESARVNWQNACGTPYSYRSRSQVCNEAYAIYRDSCG*
Ga0075432_1036623823300006058Populus RhizosphereLAQNLADPGRRVPENELRLDLPKRDATEEARSSAVKPPPPRATDPRACESARVNRELACGAPNSYKSRSPICNEAYAIYRDSCG*
Ga0070716_10012333923300006173Corn, Switchgrass And Miscanthus RhizosphereVPENELQLELPKRDATEEARSHALKPPPQRAVDPRVCESARVNWQNACGGSPYSYRSRSQMCTEAYTIYRDSCG*
Ga0070712_10071111613300006175Corn, Switchgrass And Miscanthus RhizosphereQVGNLTRVATLLLVVSLPGFAQNLPDPGRRVPENELQLELPKRDATEEARSHALKPPPQRAVDPRVCESARVNWQNACGGSPYSYRSRSQMCTEAYTIYRDSCG*
Ga0075422_1036012323300006196Populus RhizosphereVPENELKLDLPKRDATEEARSSAVKPPPPRATDPHACESARVNRELACGAPNSYKSRSPICNEAYAIYRESCG*
Ga0074050_1186263123300006577SoilMRVATLLVIVSLPAFAQNLADPGRRVPENELQLDLPKRDATEEARSYAVKPLPPRAVDPRVCESARVNWQLACGAPYSYKSRSQICTEAYAIYRDTCG*
Ga0075430_10174465413300006846Populus RhizosphereVSSATRLRVAILLLVVSLPAFAQGLAEPGRRVPENELRLDLPKRDATEEARSHAVKPPPPRAVDPRVCESARVNWQNACGTPYSYRSRSQVCNEAHAIYRDSCG*
Ga0075431_10066257513300006847Populus RhizosphereDALHRLQDARRAARAAGRKVKVSSATRLRVAILLLVVSLPAFAQGLAEPGRRVPENELRLDLPKRDATEEARSHAVKPPPPRAVDPRVCESARVNWQNACGTPYSYRSRSQVCNEAYAIYRDSCG*
Ga0075431_10135866613300006847Populus RhizosphereENELRLELPKRDATEEARLHAFKPPPPRAVDPRACESARVNRQLACGAPYSYKSRSQICAEAYAIFRDNCG*
Ga0075420_10036440923300006853Populus RhizosphereMRVAALLLIASLPAFAQNLADPGRRVPENELQLDPPKRDATEEARSHAVKPPPPRAVDPRACESARVNRQLACGAPYSYKSRSQICAEAYAIFRDNCG*
Ga0075425_10144437223300006854Populus RhizosphereLAENLPDPGRRVPENELKLDLPKRDATEEARSYAVKPPPQRAVDPRVCESARVNWQNACGGSPYSYRSRSQLCTEAYTIYRDSCG*
Ga0075425_10230434023300006854Populus RhizosphereLRVATLLVVVSLPAFAQDLPDPGRRVPENELQLDLPKRDATEEARLHAFKPPPPRAVDPRVCESARVNRQLACGAPLSYKSRSLSCTEAHAIYRDSCG*
Ga0075424_10263285013300006904Populus RhizosphereAPDGDALHRLQDARRAARAAGRKVKVSSATRLRVAILLLVVSLPAFAQGLAEPGRRVPENELRLDLPKRDATEEARSHAVKPPPPRVVDPRTCESARVNWQNACGTPYSYRSRSQVCNEAYAIYRDSCG*
Ga0075436_10004336733300006914Populus RhizosphereVPESELKLDLPKRDATEEARSHAVKPLPQRAVDPRVCESARVNWQTACGASPYSHKSRSQLCNEAYTIYRDSCG*
Ga0074063_1391102013300006953SoilMRVATLLVIVSLPAFAQNLADPGRRVPENELQLDLPKRDATEEARSYAVKPLPPRAVDPRVCESARVNWQLACGAPYSYKSRSQICTEAYTIYRDSCG*
Ga0075435_10146933223300007076Populus RhizosphereLDLPKRDATEEARLHAFKPPPPRAVDPRVCESARVNRQLACGAPLSYKSRSLSCTEAHAIYRDSCG*
Ga0099791_1016285323300007255Vadose Zone SoilLRVATLLVSVSLPAFAQNLADPGRRVPENEPQLDLPKRDATEEARSYAVKPPPPRVTDPRACESARVNWQLACGAPYSYKSRSQICNEAYAIYRDNCG*
Ga0105244_1032261623300009036Miscanthus RhizosphereVPESELKLDLPKRDATEEARSFAAKPPPPRAVDPGVCESARVNWQLACGAPYSYKSRSLSCTEAHAIYRDSCG*
Ga0114129_1068656523300009147Populus RhizosphereLEVSRNLMRVAALLLIASLPAFAQNLADPGRRVPENELQLDPPKRDATEEARSHAVKPPPPRAVDPRACESARVNRQLACGAPYSYKSRSQICAEAYAIFRDNCG*
Ga0105248_1204663313300009177Switchgrass RhizosphereLQDARRAARAAGRQVGNLTRVATLLLVVSLPGFAQNLPDPGRRVPENELQLELPKRDATEEARSHALKPPPQRAVDPRVCESARVNWQNACGGSPYSYRSRSQMCTEAYTIYRDSCG*
Ga0105238_1057514423300009551Corn RhizosphereLPAFAQNLADPGRRVPESELKLDLPKRDATEEARSHAVKPLPQRAVDPRVCESARVNWQTACGASPYSYKSRSLSCTEAHAIYRDSCG*
Ga0105249_1205181313300009553Switchgrass RhizosphereATLLLVVCLPGFAQNLPDPGRRVPENELKLDLPKRDATEEARSHAVKPLPQRAVDPRVCESARVNWQTACGASPYSHKSRSQLCNEAYTIYRDSCG*
Ga0126376_1133447423300010359Tropical Forest SoilMRVATLLLIVSLPAFAQNLPDPGRRVPENELKLDLPKRDATEEARSYAVKPPPPRAVDPRACESARVNWQNACSAPYSYKSRSQICNEAYAIYRDSCG*
Ga0126372_1049947023300010360Tropical Forest SoilLAEDLPDPGRRVPENELKLDLPKRDATEEARSYAVKPPPQRAVDPRVCESARVNWQNACGGSPYSYKARSQLCTEAYTIYRDSCG*
Ga0134124_1136186223300010397Terrestrial SoilVPENELRLDLPKRDATEEARSHAVKPPPPRVVDPRTCESARVNWQNACGTPYSFRSRSPVCNEAYAIYRDSCG*
Ga0134122_1007423523300010400Terrestrial SoilLRVATLLVIVSLPAFAQNLADPGRRVPENELQLDLPKRDATEEARSHAVKPPPPRAVDPRVCESARVNRELACGAPYSYKARSQICTEAYAIYRDSCG*
Ga0134123_1186748723300010403Terrestrial SoilMRVATFLVVVSLPAFAQGPADPGRRVPENELRLDLPKRDATEEARSHAVKPPPPRVVDPRTCESARVNWQNACGTPYSFRSRSPVCNEAYAIYRDSCG*
Ga0151490_148903333300011107SoilVPENELQLDLPKRDATEEARSYAVKPPPPRAFDPRVCESARVNRELASGAPYSYKARSQICTEAYTIYRDSCG*
Ga0105246_1092373923300011119Miscanthus RhizosphereLQDARRAARAAGRQVGNLTRVATLLLVVCLPGFAQNLPDPGRRVPESELKLDLPKRDATEEARSHAVKPLPQRAVDPRVCESARVNWQTACGASPYSYKSRSQLCNEAYTIYRDSCG*
Ga0126317_1061835313300011332SoilLPAFAQNLADPGRRVPENELRLELPKRDATEEARSFAVKPPPPRAADPRVCESARVNRELACSAPYSHRSRSQICTETYAVYRDSCG*
Ga0137464_100509023300011434SoilLRVATVLLIFSLPAFAQNLADPGRRVPENELQLDPPKRDATEEARSHAVKPPPPRAVDPRACENARVNWQLACGTPYSHKSRSQICAEAYAIYRDICG*
Ga0137433_130574313300011440SoilHRLQDARRAARAAGRQVERFFSSRLRVATLLLIVSLPAFAQNLNLADPGRRVPENELQLDPPKRDATEEARSHAVKPPPPRAVDPRACENARVNWQLACGTPYSHKSRSQICAEAYAIYRDICG*
Ga0150985_10358905013300012212Avena Fatua RhizosphereRVPENELRLELPKRDATEEARSYAVKPPPPRTFDPRVCESARVNRELGCGTPYSYKSRSQICTEAHAIYRDSCG*
Ga0150985_11117928023300012212Avena Fatua RhizosphereVPENELRLELPKRDATEEARSYAVKPPPPRTFDPRVCESARVNWQLACGAPYSYRSRSQICTEAYTIYRDSCG*
Ga0150984_10185630723300012469Avena Fatua RhizosphereVPENELRLELPKRDATEEARSYAVKPPPPRAVDPRTCESARVNWQLACGAPYSYRSRSQICTEAYTIYRDSCG*
Ga0150984_11681098023300012469Avena Fatua RhizosphereATEEARSYAVKPPPPRAFDPRVCESARVNRQLACGAAYSYKSRSQICTEAYTIYRDSCG*
Ga0150984_12047577413300012469Avena Fatua RhizosphereRWCWRSPATRVAAFLLVVCLPAFAQTLADPARRVPENELKLDLPKRDATEEARSYAVKPPPPRATDPRTCESARVNRELACGAPYSYRSRSQICTEAYAIYRDSCG*
Ga0157324_106272623300012506Arabidopsis RhizosphereVSSATRLRVVILLVVVSLPAFAQGLADPRRRVPENELRLDLPKRDATEEARSHAVKPPPPRAVDPRVCESARVNWQLACGGTPYSYKFRSLSCTEAHAVYRDSCG*
Ga0157338_103302113300012515Arabidopsis RhizosphereRDATEEARSHAVKPPPQRAVDPRVCESARVNWQTACGASPYSYKSRSQICNEAYAIYRDSCG*
Ga0157352_108990023300012519Unplanted SoilDLPKRDATEEARSHAVKPPPPRVVDPRTCESARVNWQNACGTPYSFRSRSPVCNEAYAIYRDSCG*
Ga0137397_1051195423300012685Vadose Zone SoilLRVATLLVIVSLPAFAQNLADPGRRVPENEPQLDLPKRDATEEARSYAVKPPPPRVTDPRACESARVNWQLACGAPYSYKSRSQICNETYAIYRDNCG*
Ga0137394_1002045743300012922Vadose Zone SoilLRVATLLVIVSLPAFAQNLADPGRRVPENEPQLDLPKRDATEEARSYAVKPPPPRVTDPRACESARVNWQLACGAPYSYKSRSQICNEAYAIYRDNCG*
Ga0126375_1031814823300012948Tropical Forest SoilVPENELQLAPPKRDATEEARSYAVKPPPKSAVDPRACERARVNQELVCGAPYSYKSRSPICTEAYAIYRDNCG*
Ga0164299_1094472713300012958SoilMRVAILLVIVSLPALAQNLADPGRRVPENELRLDLPKRDATEEARSYAVKPPPPRAVDPRVCESARVNRELACGSPYSYKARSQICTEAYAIYRDSCG*
Ga0164301_1001130623300012960SoilMRVAILLVIVSLPALAQNLADPGRRVPENELRLDLPKRDATEEARSHAMKPPPPRAVDPRTCESARVNWQLACGALHSYRSRSQICTEAYTIYRDSCE*
Ga0164302_1040172723300012961SoilLEVSPRAAGARLLRGAILLVIVSFTALAQNLADPGRRVPENGLRLDLPKRDATEEARSHAMKPPPPRAVDPRTCESARVNWQLACGALHSYRSRSQICTEAYTIYRDSCE*
Ga0164309_1019440753300012984SoilMRVAILLVIVSLPALAQNLADPGRRVPENGLRLDLPKRDATEEARSHAMKPPPPRAVDPRTCESARVNWQLACGAPHSYRSRSQICTEAYTIYRDSCE*
Ga0157374_1068424423300013296Miscanthus RhizosphereVPENELKLDLPKRDATEEARSHAVKPLPQRAVDPRVCESARVNWQTACGASPYSYKSRSQRCNEAYTTYRDSCG*
Ga0157377_1105615713300014745Miscanthus RhizosphereLPAFAQNLADPGRRVPESELKLDLPKRDATEEARSFAAKPPPPRAVDPGVCESARVNWQLACGAPYSYKSRSQLCNEAYTIYRDSCG*
Ga0132258_1015261683300015371Arabidopsis RhizosphereVPENELRLDLPKRDATEEARSHALKPPPPRAVDPRVCESARVNWQLACGGTPYSYKFRSLSCTEAHAVYRDSCG*
Ga0132258_1073130153300015371Arabidopsis RhizosphereVPENELRLDLPKRDATEEARSHAVKPPPPRAVDPRVCESARVNWQNACGTPYSYRSRSQVCNEAYAIYRDSCG*
Ga0132256_10095593613300015372Arabidopsis RhizosphereDATEEARSHAVKPPPPRAVDPRVCESARVNWQNACGTPYSYRSRSQVCNEAYAIYRDSCG
Ga0132256_10097583323300015372Arabidopsis RhizosphereMLLSLATLLIVSLPAFAQGLADPGRRVPENELRLDLPKRDATEEARSHAVKPPPPRVVDPRTCESARVNWQLACGGTPYSYKSRSLNCTEAHA
Ga0132255_10006187693300015374Arabidopsis RhizosphereVPENELRLDLPKRDATEEARSHAVKPPPPRVVDPRTCESARVNWQNACGTPYSYRSRSQVCNE
Ga0132255_10060285223300015374Arabidopsis RhizosphereMLLSLATLLIVSLPAFAQGLADPGRRVPENELRLDLPKRDATEEARSHAVKPPPPRAVDPRVCESARVNWQNACGTPYSYRSRSQVCNEAYAIYRDSCG*
Ga0184628_1011993223300018083Groundwater SedimentMRVAILLVIVSLPAFGQNLADPGRRVPENEPQLDLPKRDATEEARSYAVKPPPPRTTDPRTCESARVNWQLACGAPYSYKSRSQICTEAYAIYRDSCG
Ga0247693_105217123300024181SoilVPENELRLDLPKRDATEEARSYAVKPPPPRATDPRACESARVNRELACGAPNSYKSRSPICNEAYAIYRDSCG
Ga0247688_100418533300024186SoilRAAGRQVGNLTRVATLLLVVCLPGFAQNLPDPGRRVPESELKLDLPKRDATEEARSHAVKPLPQRAVDPRVCESARVNWQTACGASPYSHKSRSQLCNEAYTIYRDSCG
Ga0247672_100052783300024187SoilVPENELKLDLPKRDATEEARSHAVKPLPQRAVDPRVCESARVNWQTACGASPYSYKSRSQLCNEAYTIYRDSCG
Ga0247673_102590123300024224SoilALAQNLADPGRRVPENELRLDLPKRDATEEARSYAVKPPPPRATDPRACESARVNRELACGAPNSYKSRSPICNEAYAIYRDSCG
Ga0247676_109056223300024249SoilRVPENELKLDLPKRDATEEARSHAVKPLPQRAVDPRVCESARVNWQTACGASPYSYKSRSQLCNEAYTIYRDSCG
Ga0247674_104320823300024275SoilPGRRVPESELKLDLPKRDATEEARSHAVKPLPQRAVDPRVCESARVNWQTACGASPYSYKSRSQLCNEAYTIYRDSCG
Ga0247671_103148823300024284SoilRAARAAGRQVGNLTRVATLLLVVCLPGFAQNLPDPGRRVPESELKLDLPKRDATEEARSHAVKPLPQRAVDPRVCESARVNWQTACGASPYSYKSRSQLCNEAYTIYRDSCG
Ga0247678_1000170163300024325SoilRAARAAGRQVGNLTRVATLLLVVCLPGFAQNLPDPGRRVPENELKLDLPKRDATEEARSHAVKPLPQRAVDPRVCESARVNWQTACGASPYSYKSRSQLCNEAYTIYRDSCG
Ga0207680_1079679113300025903Switchgrass RhizosphereNLADPGRRVPESELKLDLPKRDATEEARSFAAKPPPPRAVDPGVCESARVNWQLACGAPYSYKSRSLSCTEAHAIYRDSCG
Ga0207695_1152855223300025913Corn RhizosphereLPAFAQNLADPGRRVPESELKLDLPKRDATEEARSFAAKPPPPRAVDPGVCESARVNWQLACGAPYSYKSRSLS
Ga0207677_1037044023300026023Miscanthus RhizosphereVPESELKRDLPKRDATEEARSHAVKPLPQRAVDPRVCESARVNWQTACGASPYSYKSRSQLCNEAYTIYRDSCG
Ga0207676_1180660023300026095Switchgrass RhizospherePAFAQNLADPGRRVPESELKLDLPKRDATEEARSFAAKPPPPRAVDPGVCESARVNWQLACGAPYSYKSRSLSCTEAHAIYRDSCG
Ga0209177_1011325723300027775Agricultural SoilLAENLPDPGRRVPENELKLDLPKRDATEEARSYAVKPPPQRAVDPRVCESARVNWQNACGGSPYSYRSRSQLCTEAYTIYRDSCG
Ga0209811_1001815263300027821Surface SoilMRVAILLVIVSLPALAQNLADPGRRVPENELRLDLPKRDATEEARSHAMKPPPPRAVDPRTCESARVNWQLACGAPHSYRSRSQICTEAYTIYRDSCE
Ga0209481_1013465333300027880Populus RhizosphereVSSATRLRVAILLLVVSLPAFAQGLAEPGRRVPENELRLDLPKRDATEEARSHAVKPPPPRAVDPRVCESARVNWQNACGTPYSYRSRSQVCNEAYAIYRDSCG
Ga0247685_100263013300028065SoilPGRRVPENELKLDLPKRDATEEARSHAVKPLPQRAVDPRVCESARVNWQTACGASPYSYKSRSQLCNEAYTIYRDSCG
Ga0247675_100282233300028072SoilRDATEEARSYAVKPPPPRATDPRACESARVNRELACGAPNSYKSRSPICNEAYAIYRDSC
Ga0247675_103902713300028072SoilGNLTRVATLLLVVCLPGFAQNLPDPGRRVPESELKLDLPKRDATEEARSHAVKPLPQRAVDPRVCESARVNWQTACGASPYSYKSRSQLCNEAYTIYRDSCG
Ga0247684_100511113300028138SoilVPENELKLDLPKRDATEEARSHAVKPLPQRAVDPRVCESARVNWQTACGASPYSYKSRSQLCNE
Ga0247682_101229323300028146SoilVPESELKLDLPKRDATEEARSHAVKPLPQRAVDPRVCESARVNWQTACGASPYSHKSRSQLCNEAYTIYRDSCG
Ga0247822_1012770523300028592SoilMRVATLLLIVSLPAFAQNLADPGRRVPENELQLDPPKRDAMEEARSYAVKPPPPRAVDPRACESARVNWQLACGAPYSYKSRSQICAEAYAIYRGSCG
Ga0247821_1036082423300028596SoilMRVATLLLIVSLPAFAQNLADPGRRVPENELQLDPPKRDAMEEARSYALKPPPPRAVDPRACESARVNWQLACGAPYSYKSRSQICAEAYAIYRGSCG
Ga0307504_1009876713300028792SoilMRVAALLVIVSLPAFAQNLADPGRRVPENELRLDLPKRDATEEARSYAVKPPPVRTIDPRTCESARVNRELACGAPYSYKS
Ga0307499_1000129153300031184SoilVFAQNLADPERRVPENELQLDLPKRDATEEARSYAVKPPPPRATDPRVCESARVNWQNACGTPYSYRSRSQVCNEAYAIYRDSCG
Ga0307495_1003612223300031199SoilVPENELKLDLPKRDATEEARSHAVKPPPQRAVDPSLCENARVNRELACGASPYSYKSRSQICTEAYAIYRDNCG
Ga0307497_1029605613300031226SoilVPENELLRLDLPKRDATEEARSHALKPPPPRAVDPRVCESARVNWQLACGTPYSSKSRSQICNEASA
Ga0310888_1101718423300031538SoilNELKLDMPKRDATEEARSYAVKPPPPRVTDPRTCESARVNRELACGAPYSYKSRSQICTEAYAIYRGSCG
Ga0310886_1011600523300031562SoilMRVATLLLIVSLPAFAQNLADPGRRVPENGLRLDLPKRDATEEARSHAMKPPPPRAVDPRTCESARVNWQLACGAPHSYRSRSQICTEAYTIYRDSCE
Ga0307469_1042628423300031720Hardwood Forest SoilVSSATRLRVATLLVVVSLPAFAQSLPDPGRRVPENELQLDLPKRDATEEARSHAVKPPPPRAVDPRVCESARVNRELACGAPYSYKSRSQICTEAHAVYRDSCG
Ga0307468_10111104913300031740Hardwood Forest SoilMRVATLLVIVSLPAFAQNLADPGRRVPENEPQLDLPKRDATEEARSYAVKPPPPRVTDPRTCESARVNWQLACGAPYSYRSRSQICTEAYAIYRDSCG
Ga0307473_1004122923300031820Hardwood Forest SoilLLIVSLPAFAQNLADPARRVPENELQLDPPKRDATEEARSHAVKPPPPRVVDPRACESARVNWQLACGAPYSYKSRSQICMEAYAIYRDSCG
Ga0310907_1071098513300031847SoilLGVGEPLRHDAMLLSLATLLIVSLPAFAQGLADPGRRVPENELRLDLPKRDATEEARSHAVKPPPPRAVDPRVCESARVNWQNACGTPYSYRSRSQVCNEAYAIYRDSCG
Ga0310892_1080208123300031858SoilMRVAILLVIVSLPALAQNLADPGRRVPENELRLDLPKRDATEEARSHAVKPPPPRAVDPRVCESARVNWQNACGTPYSYRSRSQVCNEAYAIYRDSCG
Ga0310900_1035882723300031908SoilVSSATRLRVVILLVVVSLPAFAQGLADPGRRVPENELRLDLPKRDATEEARSHAVKPPPPRAVDPRVCESARVNWQNACGTPYSYRSRSQVCNEAYAIYRDSCG
Ga0310900_1137483323300031908SoilEVSRNLMRVATLLLIVSLPAFAQNLADPGRRVPENELQLDPPKRDATEEARSYAVKPPPPRAVDPRACESARVNRELACGAPYSYKSRSQICAEAYAIYRGTCG
Ga0310885_1055634313300031943SoilDPPKRDAMEEARSYAVKPPPPRAVDPRACESARVNWQLACGAPYSYKSRSQICAEAYAIYRGSCG
Ga0310906_1002397543300032013SoilRAAGARLMRVAILLVIVSLPALAQNLADPGRRVPENGLRLDLPKRDATEEARSHAMKPPPPRAVDPRTCESARVNWQLACGAPHSYRSRSQICTEAYTIYRDSCE
Ga0310890_1033551413300032075SoilMRVATLLLIVSLPAFAQNLADPGRRVPENELQLDPPKRDAMEEARSYALKPPPPRAVDPRACESARVNWQLACGAPYSYKSRSQICTEAYAIYRGSCG
Ga0307472_10022890523300032205Hardwood Forest SoilMRVATLLLIVSLPAFAQNLADPGRRVPENELQLDLPKRDATEEARSHAVKPPPPRAVDPRVCESARVNRELACGTPYSYKSRSQICMEAYAIYRDSCG
Ga0307472_10068172023300032205Hardwood Forest SoilMPALFFFLGLLAAPAAAQNLPDPGRRVPETERQLDLPKQDAAAEARSYAVKPPPPRAADPRACESARLNWQLACGAPYSYKSRSQNCTEAYAIYRDSCD
Ga0247830_1012778923300033551SoilVPENELQLDPPKRDAMEEARSYAVKPPPPRAVDPRACESARVNWQLACGAPYSYKSRSQICAEAYAIYRGSCG
Ga0364929_0001686_4469_48013300034149SedimentLEVNREPPAPRLMRVAILLVIVSLPAFGQNLADPGRRVPENEPQLDLPKRDATEEARSYAVKPPPPRTTDPRTCESARVNWQLACGAPYSYKSRSQICTEAYAIYRDSCG
Ga0364943_0030988_370_6663300034354SedimentLRVATVLLIFSLPAFAQNLADPGRRVPENELQLDPPKRDATEEARSHAVKPPPPRAVDPRACENARVNWQLACGTPYSHKSRSQICAEAYAIYRDICG
Ga0373948_0025532_423_7373300034817Rhizosphere SoilVSSATRLRVVILLVVVSLPAFAQGLADPGRRVPENELRLDLPKRDATEEARSYAVKPPPPRAFDPRVCESARVNWQNACGTPYSYRSRSQVCNEAYAIYRDSCG

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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