Metagenome Family F068108

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F068108
Family Type	Metagenome
Number of Sequences	125
Average Sequence Length	41 residues
Representative Sequence	MSVMLVCLVLWAATGAVALLFAAVLAGLGVLYVVLLTNL
Number of Associated Samples	35
Number of Associated Scaffolds	125

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	17.60 %
% of genes near scaffold ends (potentially truncated)	24.80 %
% of genes from short scaffolds (< 2000 bps)	92.80 %
Associated GOLD sequencing projects	33
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (56.800 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil (63.200 % of family members)
Environment Ontology (ENVO)	Unclassified (64.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (68.800 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 55.22% β-sheet: 0.00% Coil/Unstructured: 44.78%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.54
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.54
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 125 Family Scaffolds
PF12680	SnoaL_2	3.20
PF05239	PRC	1.60
PF00313	CSD	1.60
PF06803	DUF1232	1.60
PF13426	PAS_9	0.80
PF03551	PadR	0.80
PF01979	Amidohydro_1	0.80
PF00903	Glyoxalase	0.80
PF13472	Lipase_GDSL_2	0.80
PF13545	HTH_Crp_2	0.80
PF03819	MazG	0.80
PF08450	SGL	0.80
PF10823	DUF2568	0.80
PF02673	BacA	0.80
PF00563	EAL	0.80
PF02517	Rce1-like	0.80
PF08592	Anthrone_oxy	0.80
PF12681	Glyoxalase_2	0.80
PF00685	Sulfotransfer_1	0.80
PF13147	Obsolete Pfam Family	0.80
PF08241	Methyltransf_11	0.80
PF01548	DEDD_Tnp_IS110	0.80
PF07883	Cupin_2	0.80
PF13340	DUF4096	0.80
PF10604	Polyketide_cyc2	0.80
PF13205	Big_5	0.80
PF03061	4HBT	0.80
PF00561	Abhydrolase_1	0.80
PF13564	DoxX_2	0.80
PF00582	Usp	0.80
PF13561	adh_short_C2	0.80

COG ID	Name	Functional Category	% Frequency in 125 Family Scaffolds
COG3339	Uncharacterized membrane protein YkvA, DUF1232 family	Function unknown [S]	1.60
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	0.80
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.80
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.80
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.80
COG1968	Undecaprenyl pyrophosphate phosphatase	Lipid transport and metabolism [I]	0.80
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	0.80
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	0.80
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	0.80
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	0.80
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.80
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	0.80
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	0.80
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	0.80

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.80 %
All Organisms	root	All Organisms	43.20 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.80 %
cellular organisms	root	All Organisms → cellular organisms	41.60 %
Viruses	superkingdom	All Organisms → Viruses	1.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.80 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	41.60 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.80 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	31.20 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.60 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.80 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.80 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	26.40 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.60 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.80 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.80 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	16.80 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4.00 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	1.60 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.60 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.80 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.80 %
Rubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales	16.80 %
unclassified Acidimicrobiia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia	1.60 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.60 %
Geminicoccaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae	0.80 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.80 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.80 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.80 %
Rubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	16.80 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	1.60 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.60 %
Geminicoccus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae → Geminicoccus	0.80 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.80 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.80 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.80 %
unclassified Rubrobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae	9.60 %
Rubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter	1.60 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	1.60 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.60 %
Geminicoccus roseus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae → Geminicoccus → Geminicoccus roseus	0.80 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples	0.80 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.80 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.80 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.80 %
Rubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	9.60 %
Rubrobacter marinus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter marinus	1.60 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	1.60 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.60 %
Streptomyces brasiliscabiei	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces brasiliscabiei	0.80 %
uncultured Rubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	0.80 %
Geminicoccus roseus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae → Geminicoccus → Geminicoccus roseus	0.80 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.80 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.80 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002568\|C688J35102_120979172	All Organisms → cellular organisms → Bacteria	4582	Open in IMG/M
3300005562\|Ga0058697_10027796	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	2032	Open in IMG/M
3300005562\|Ga0058697_10073210	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1365	Open in IMG/M
3300005562\|Ga0058697_10100980	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1196	Open in IMG/M
3300005562\|Ga0058697_10122201	All Organisms → Viruses → Predicted Viral	1106	Open in IMG/M
3300005562\|Ga0058697_10128548	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1083	Open in IMG/M
3300005562\|Ga0058697_10176626	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	951	Open in IMG/M
3300005562\|Ga0058697_10213117	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	881	Open in IMG/M
3300005562\|Ga0058697_10298851	Not Available	767	Open in IMG/M
3300005562\|Ga0058697_10475538	All Organisms → cellular organisms → Bacteria	633	Open in IMG/M
3300005562\|Ga0058697_10479082	Not Available	631	Open in IMG/M
3300005562\|Ga0058697_10596119	Not Available	576	Open in IMG/M
3300005981\|Ga0081538_10089455	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1598	Open in IMG/M
3300005981\|Ga0081538_10114717	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1312	Open in IMG/M
3300006169\|Ga0082029_1308671	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1929	Open in IMG/M
3300006876\|Ga0079217_11446704	Not Available	540	Open in IMG/M
3300006894\|Ga0079215_11120537	Not Available	591	Open in IMG/M
3300006918\|Ga0079216_10456138	All Organisms → cellular organisms → Bacteria	826	Open in IMG/M
3300006918\|Ga0079216_11295779	Not Available	594	Open in IMG/M
3300007004\|Ga0079218_10724709	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces brasiliscabiei	938	Open in IMG/M
3300009789\|Ga0126307_10186144	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1665	Open in IMG/M
3300009789\|Ga0126307_10202866	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1591	Open in IMG/M
3300009789\|Ga0126307_10254488	Not Available	1412	Open in IMG/M
3300009789\|Ga0126307_10282257	All Organisms → cellular organisms → Bacteria	1336	Open in IMG/M
3300009789\|Ga0126307_10434149	All Organisms → cellular organisms → Bacteria	1060	Open in IMG/M
3300009789\|Ga0126307_10519119	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	962	Open in IMG/M
3300009789\|Ga0126307_10679195	Not Available	831	Open in IMG/M
3300009789\|Ga0126307_10681503	Not Available	829	Open in IMG/M
3300009789\|Ga0126307_10756738	Not Available	784	Open in IMG/M
3300009789\|Ga0126307_11159550	Not Available	625	Open in IMG/M
3300009789\|Ga0126307_11573952	Not Available	533	Open in IMG/M
3300009840\|Ga0126313_10200995	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	1529	Open in IMG/M
3300009840\|Ga0126313_10218072	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	1470	Open in IMG/M
3300009840\|Ga0126313_10886510	Not Available	728	Open in IMG/M
3300009840\|Ga0126313_10944837	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	705	Open in IMG/M
3300009840\|Ga0126313_11146937	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	640	Open in IMG/M
3300009840\|Ga0126313_11594642	Not Available	543	Open in IMG/M
3300009840\|Ga0126313_11656879	Not Available	533	Open in IMG/M
3300010036\|Ga0126305_10157093	Not Available	1418	Open in IMG/M
3300010036\|Ga0126305_10280984	All Organisms → Viruses → Predicted Viral	1077	Open in IMG/M
3300010036\|Ga0126305_10489582	Not Available	819	Open in IMG/M
3300010036\|Ga0126305_10737978	Not Available	667	Open in IMG/M
3300010036\|Ga0126305_10823957	Not Available	631	Open in IMG/M
3300010036\|Ga0126305_10942232	Not Available	590	Open in IMG/M
3300010037\|Ga0126304_10057285	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2381	Open in IMG/M
3300010037\|Ga0126304_10085840	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1970	Open in IMG/M
3300010037\|Ga0126304_10155091	All Organisms → cellular organisms → Bacteria	1483	Open in IMG/M
3300010037\|Ga0126304_10688625	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter marinus	690	Open in IMG/M
3300010037\|Ga0126304_10797863	Not Available	640	Open in IMG/M
3300010037\|Ga0126304_10869727	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae → Geminicoccus → Geminicoccus roseus	612	Open in IMG/M
3300010037\|Ga0126304_10940257	Not Available	588	Open in IMG/M
3300010038\|Ga0126315_10054406	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	2183	Open in IMG/M
3300010038\|Ga0126315_10115191	Not Available	1558	Open in IMG/M
3300010038\|Ga0126315_11177095	Not Available	520	Open in IMG/M
3300010038\|Ga0126315_11245286	Not Available	506	Open in IMG/M
3300010038\|Ga0126315_11245524	Not Available	506	Open in IMG/M
3300010040\|Ga0126308_10147693	Not Available	1482	Open in IMG/M
3300010040\|Ga0126308_10198818	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1287	Open in IMG/M
3300010040\|Ga0126308_10299680	Not Available	1056	Open in IMG/M
3300010040\|Ga0126308_10519719	Not Available	806	Open in IMG/M
3300010040\|Ga0126308_10728055	Not Available	683	Open in IMG/M
3300010040\|Ga0126308_10796830	Not Available	654	Open in IMG/M
3300010040\|Ga0126308_11244138	Not Available	528	Open in IMG/M
3300010041\|Ga0126312_10338252	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1065	Open in IMG/M
3300010041\|Ga0126312_10814610	Not Available	678	Open in IMG/M
3300010041\|Ga0126312_10900905	Not Available	644	Open in IMG/M
3300010041\|Ga0126312_11091382	Not Available	586	Open in IMG/M
3300010042\|Ga0126314_10086121	Not Available	2114	Open in IMG/M
3300010042\|Ga0126314_10455645	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	925	Open in IMG/M
3300010042\|Ga0126314_10464602	Not Available	916	Open in IMG/M
3300010042\|Ga0126314_11269548	Not Available	551	Open in IMG/M
3300010042\|Ga0126314_11373870	Not Available	530	Open in IMG/M
3300010044\|Ga0126310_10068886	Not Available	2040	Open in IMG/M
3300010044\|Ga0126310_10303977	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1100	Open in IMG/M
3300010044\|Ga0126310_10352273	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1033	Open in IMG/M
3300010044\|Ga0126310_10569427	Not Available	839	Open in IMG/M
3300010044\|Ga0126310_10639437	Not Available	798	Open in IMG/M
3300010044\|Ga0126310_10668322	Not Available	783	Open in IMG/M
3300010044\|Ga0126310_10684531	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	775	Open in IMG/M
3300010044\|Ga0126310_11546637	Not Available	546	Open in IMG/M
3300010044\|Ga0126310_11690548	Not Available	525	Open in IMG/M
3300010045\|Ga0126311_10170509	Not Available	1567	Open in IMG/M
3300010045\|Ga0126311_10439161	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1011	Open in IMG/M
3300010045\|Ga0126311_10543336	Not Available	914	Open in IMG/M
3300010045\|Ga0126311_10674409	Not Available	824	Open in IMG/M
3300010045\|Ga0126311_10743704	Not Available	787	Open in IMG/M
3300010045\|Ga0126311_10935796	Not Available	705	Open in IMG/M
3300010045\|Ga0126311_11866906	Not Available	510	Open in IMG/M
3300010166\|Ga0126306_10053793	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	2797	Open in IMG/M
3300010166\|Ga0126306_10083012	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2285	Open in IMG/M
3300010166\|Ga0126306_10212292	All Organisms → cellular organisms → Bacteria	1465	Open in IMG/M
3300010166\|Ga0126306_10369735	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1117	Open in IMG/M
3300010166\|Ga0126306_10570178	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter marinus	900	Open in IMG/M
3300010166\|Ga0126306_10790465	Not Available	765	Open in IMG/M
3300010166\|Ga0126306_10993209	Not Available	684	Open in IMG/M
3300010166\|Ga0126306_11081142	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	656	Open in IMG/M
3300010166\|Ga0126306_11239712	Not Available	614	Open in IMG/M
3300010166\|Ga0126306_11293221	Not Available	601	Open in IMG/M
3300010166\|Ga0126306_11789036	Not Available	514	Open in IMG/M
3300014487\|Ga0182000_10102731	All Organisms → cellular organisms → Bacteria	962	Open in IMG/M
3300014487\|Ga0182000_10491923	Not Available	568	Open in IMG/M
3300018422\|Ga0190265_11467477	Not Available	796	Open in IMG/M
3300018432\|Ga0190275_11308673	Not Available	801	Open in IMG/M
3300018469\|Ga0190270_10116768	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	2087	Open in IMG/M
3300018469\|Ga0190270_10322593	All Organisms → cellular organisms → Bacteria	1389	Open in IMG/M
3300018476\|Ga0190274_11530684	Not Available	759	Open in IMG/M
3300019377\|Ga0190264_10920986	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	686	Open in IMG/M
3300019767\|Ga0190267_10094845	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1169	Open in IMG/M
3300019767\|Ga0190267_10730814	Not Available	643	Open in IMG/M
3300027750\|Ga0209461_10102446	Not Available	651	Open in IMG/M
3300030510\|Ga0268243_1039227	All Organisms → cellular organisms → Bacteria	1000	Open in IMG/M
3300030510\|Ga0268243_1147611	Not Available	568	Open in IMG/M
3300030516\|Ga0268255_10213176	Not Available	558	Open in IMG/M
3300031731\|Ga0307405_11583717	Not Available	578	Open in IMG/M
3300031911\|Ga0307412_11132023	All Organisms → cellular organisms → Bacteria → Terrabacteria group	698	Open in IMG/M
3300031911\|Ga0307412_11268502	Not Available	662	Open in IMG/M
3300032002\|Ga0307416_101811764	Not Available	714	Open in IMG/M
3300032004\|Ga0307414_11861341	Not Available	562	Open in IMG/M
3300032126\|Ga0307415_100484225	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1078	Open in IMG/M
3300032159\|Ga0268251_10036730	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1548	Open in IMG/M
3300032159\|Ga0268251_10096629	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1047	Open in IMG/M
3300032159\|Ga0268251_10233106	All Organisms → cellular organisms → Bacteria	736	Open in IMG/M
3300032159\|Ga0268251_10324855	Not Available	645	Open in IMG/M
3300032159\|Ga0268251_10331406	Not Available	640	Open in IMG/M
3300032159\|Ga0268251_10396346	Not Available	596	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	78.40%
Host-Associated	Host-Associated	21.60%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	78.40%
Plants	Host-Associated → Plants	21.60%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	78.40%
Phylloplane	Host-Associated → Plants → Phylloplane	14.40%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.80%
Roots	Host-Associated → Plants → Roots	1.60%
Phyllosphere	Host-Associated → Plants → Phyllosphere	0.80%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	77.60%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	14.40%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.80%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.60%
Loam	Environmental → Terrestrial → Soil → Loam	0.80%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	0.80%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	73.60%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	14.40%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.80%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.00%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	1.60%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.80%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	0.80%

Habitat	Taxonomy	Distribution
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	63.20%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	14.40%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.40%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	4.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	4.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.20%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	1.60%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.80%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.80%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	0.80%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300027750	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300030510	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)	Environmental	Open in IMG/M
3300030516	Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (v2)	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
C688J35102_1209791724	3300002568	Soil	MSVMLVCLVLWAATGAVSLLFAAVLAGLGVLYVVLLINR*
Ga0058697_100277962	3300005562	Agave	LMSVMLVCLVLWAATGAVALLFGAVLAALGVLYMVLLTNL*
Ga0058697_100732101	3300005562	Agave	GNTLGWVLWALMSVMLVCLVLWAATGAVALLFAAVLAGLGVLYVVLLTNL*
Ga0058697_101009802	3300005562	Agave	MSVMLVCLVLWAATGAVALLFGAVLAALGVLYVVLLTNL*
Ga0058697_101222012	3300005562	Agave	LMSVMLICLVLWAATGAVPLLFGAVVAGLGVLYVVLLINR*
Ga0058697_101285484	3300005562	Agave	LGWVVWALFSVMLLCLVLWAATGAVALLFAAVLAALGVLYVVLFTNL*
Ga0058697_101766262	3300005562	Agave	LMSVMLVCLLLWAATGAVVLLFAAVLAALGVLYVVLLTNL*
Ga0058697_102131171	3300005562	Agave	WALMSVMLICLVLWAATGAVVLLFAAVLAALGVLYVVLLINR*
Ga0058697_102988511	3300005562	Agave	LVWVVLLLVMLACLLLWASTGAAVLFFVALVAGLGVLYVGLFTDL*
Ga0058697_104755382	3300005562	Agave	LMSVMLICLVLWAATGAVALLFAAVLAGLRVLYVVLLINR*
Ga0058697_104790821	3300005562	Agave	LMSVMLVCIVLWALTGTVALLFAAVLAALGVLYVVLLTNL*
Ga0058697_105961191	3300005562	Agave	LMSVMLVCLVLWAATGAVVLLFAAVLAALGVLYVVLLTNL*
Ga0081538_100894552	3300005981	Tabebuia Heterophylla Rhizosphere	MSVMLVCLLLWAATGAVALLFGAVLAGLGVLYVVLLTNL*
Ga0081538_101147171	3300005981	Tabebuia Heterophylla Rhizosphere	LSWVVWALISVMLVCILLWAATGAVALLFGAVLAGLGVIYVVLLTNL*
Ga0082029_13086714	3300006169	Termite Nest	LGWVVWALMSVMLVCLLLWAATGAVPLLFGAVLAALGVLYVVLLTNL*
Ga0079217_114467042	3300006876	Agricultural Soil	LMSVMLICLVLWEATGAVPLLFAAVLAGLRVLYVVLLINR*
Ga0079215_111205371	3300006894	Agricultural Soil	LLSVMLVSIVLWALTGTVALLFAAVLAGLGVLYLVLLTNL*
Ga0079216_104561381	3300006918	Agricultural Soil	LVWVVWALMSVMLVCLLLWAATGAVPLLFAAVLAGLGVLYVVLLTNL*
Ga0079216_112957792	3300006918	Agricultural Soil	MSVMVVCLVLWAATGAVALLFAAVLAGLGVLYVVLLTNL*
Ga0079218_107247091	3300007004	Agricultural Soil	LMSVMLVCLVLWAATGAVPLLFAAVLAGLGVLYVVLLTNL*
Ga0126307_101861444	3300009789	Serpentine Soil	MLVCLLLWAATSSFPLLFAAVMAGLGLLYVVLFTDL*
Ga0126307_102028662	3300009789	Serpentine Soil	MSVMLVCLLLWALTGAVWLLFGAVLAGVGVLYVVLLTNL*
Ga0126307_102544882	3300009789	Serpentine Soil	MSVMLISLVLWAATGAVPLLFAAMLAGLRVLYVVLLINR*
Ga0126307_102822572	3300009789	Serpentine Soil	MLVCIVLWASTGAVALLFAAVPDTLVMLYVVLFTNF*
Ga0126307_104341491	3300009789	Serpentine Soil	MSVMLVCLVLWAATGAVPLLFAAVLAGLGVLYVVLLTNL*
Ga0126307_105191192	3300009789	Serpentine Soil	LVWVVWILLSVMLLCMVLWALTGTVALLFAAVLAGLGGLYVVLFTNL*
Ga0126307_106791953	3300009789	Serpentine Soil	MLACLVLWALTGAVPLLFAAVMVGLGVLYMVLFTNL*
Ga0126307_106815032	3300009789	Serpentine Soil	MSVMLVCLVLWAATGAVALLFAAVLAGLGVLYVVLLTNL*
Ga0126307_107567382	3300009789	Serpentine Soil	LVWVVWVLLSVMLVCLLLWAVTTAVPLLFAAVLAGLGVRYVVLFTNL*
Ga0126307_111595501	3300009789	Serpentine Soil	MSVMLLCFVLWAATGAVALLFAAVLAALGVLYVVLTNL*
Ga0126307_115739521	3300009789	Serpentine Soil	VCLVLWAATGAVALLFAAVLAGLGVLYVVLLTNL*
Ga0126313_102009953	3300009840	Serpentine Soil	LVWVVWILLSVMLLCIVLWALTGTVALLFAAVLAGLGGLYVVLFTNL*
Ga0126313_102180723	3300009840	Serpentine Soil	MLACLLLWALTGAVPLLFAAVLVGLGVLYMVLFTNL*
Ga0126313_108865102	3300009840	Serpentine Soil	MSVMLVSIVLWAATGAVWLLFGAVLAGLGVLYIVLVTNL*
Ga0126313_109448372	3300009840	Serpentine Soil	MSVMLVCLLLWAATGAVTLLIAAVLAALGVLYVVLLTNL*
Ga0126313_111469371	3300009840	Serpentine Soil	MSVMLVSIVLWAATGAVAVLFAAVLAGLGGLYVVLLTNL*
Ga0126313_115946422	3300009840	Serpentine Soil	VWALMSVMLLCLVLWAATGAVALLFAAVPAALGVLYVVLLTNL*
Ga0126313_116568791	3300009840	Serpentine Soil	MLVCLVLWAATGAVPLLFAAVLAGLGVLYVVLLTNL*
Ga0126305_101570932	3300010036	Serpentine Soil	MLVCLVLWVVTGVVPLLFAAVLAALGMLYMVLFTNL*
Ga0126305_102809841	3300010036	Serpentine Soil	MSVMLVCLVLWATTGAVALLFGAVLAGLGVLYVVLLTNL*
Ga0126305_104895822	3300010036	Serpentine Soil	MSVMLVCLLLWASTGAVALLFAAVLAGLGVLYVVLLTNL*
Ga0126305_107379782	3300010036	Serpentine Soil	LVWVVWILLSVMLVCIVLWAATGAVALLFAAVLAGLGVLYVALFTNL*
Ga0126305_108239572	3300010036	Serpentine Soil	MLACLVLWALTGAVWLLFAAVLVGLGVLYMVLFTNL*
Ga0126305_109422323	3300010036	Serpentine Soil	ALMSVMLLCLVLWAATGAVALLFAAVLAALGVLYVVLLTNLQRPL*
Ga0126304_100572852	3300010037	Serpentine Soil	MSVMLICLVLWAATGAVPLLFAAVLAGLRVLYVVLLINR*
Ga0126304_100858402	3300010037	Serpentine Soil	MTVMLVCLVLWAATGAVALLFAAVLAGLGVLYVALLTNL*
Ga0126304_101550912	3300010037	Serpentine Soil	MSVMLVCLVLWAATGAVPLLFAAVLAALRVLYVVLLTNL*
Ga0126304_106886251	3300010037	Serpentine Soil	MLVCLLLWALTGTVPLLFAAVLVGLGVLYVVLFTNL*
Ga0126304_107978632	3300010037	Serpentine Soil	VVWALMSVMLLCLVLWAATGAVALLFAAVLAALGVLYVVLLTNL*
Ga0126304_108697271	3300010037	Serpentine Soil	MLVCLVLWAATGVVALLFGAVVAGLGVLYMVLFTNS*
Ga0126304_109402573	3300010037	Serpentine Soil	LMSVMLLCLVLWAATGAVALLFAAVLAALGVLYVVLLTNLQRPL*
Ga0126315_100544064	3300010038	Serpentine Soil	LVWVVWILLSVMLLCIVLWALTGTVALLFAAVLAGLGGLYVVLLTNL*
Ga0126315_101151913	3300010038	Serpentine Soil	MSVMLVCLFLWALTGAVWLLFGAVLAGLGVLYVVLLTNL*
Ga0126315_111770952	3300010038	Serpentine Soil	MSVMLVCLVLWAATGAVALLFAAVLAALGVLYVVLLTNL*
Ga0126315_112452861	3300010038	Serpentine Soil	LVWVVWVLLSVMLVCLLLWAVTTAVPLLFGAVLAGLGVLYVVLFTNL*
Ga0126315_112455241	3300010038	Serpentine Soil	TIGWVVWALMSVMLLCLVLWAATGAVALLFAAVPAALGVLYVVLLTNL*
Ga0126308_101476932	3300010040	Serpentine Soil	MSVMLVSIVLWAATGAVAVLFAAVLAGLGVLYVVLLTNL*
Ga0126308_101988182	3300010040	Serpentine Soil	MSVMLVCLLLWAATGAVWLLFGAVLAGLGVLYVVLLTNL*
Ga0126308_102996801	3300010040	Serpentine Soil	MSVMLLCLVLWAATGAVALLFAAVLAALGVLYVVLLTNLQRPL*
Ga0126308_105197193	3300010040	Serpentine Soil	GWVVWALMSVMLVCLLLWAATGAVWLLFGAVLAGVGVLYVVLLTNL*
Ga0126308_107280552	3300010040	Serpentine Soil	MSVMLVCLLLWAATGAVALLFGAVLAALGVLYVVLLTNL*
Ga0126308_107968302	3300010040	Serpentine Soil	MSVMLVCLVLWAATGAVWLLFGAVLAGLGVLYVVLLT
Ga0126308_112441382	3300010040	Serpentine Soil	GWVVLALMSVMLVCLVLWAATGAVWLLFGAVLAGLGVLYVVLLTNL*
Ga0126312_103382522	3300010041	Serpentine Soil	MSVMLVCLVLWAATGAVWLLFGAVLAGLGVLYVVLLTNL*
Ga0126312_108146101	3300010041	Serpentine Soil	MLACLVLWALSGAVWLLFAAVLVGLGVLYMVLFTNL*
Ga0126312_109009052	3300010041	Serpentine Soil	MSVMLVCIVLWAATGAVALLFGAVLAGLGVLYVVLLTNL*
Ga0126312_110913822	3300010041	Serpentine Soil	MSVMLVCLLLWAATGAVALLFGAVLAGLGVLYIVLVTNL*
Ga0126314_100861214	3300010042	Serpentine Soil	MSVMLVCLFLWALTGAVALLFGAVLAGLGVLYVVLLTNL*
Ga0126314_104556451	3300010042	Serpentine Soil	MSVMLVCLVLWAATGAVWLLFGAVLAGLGVLYVVLLTN
Ga0126314_104646022	3300010042	Serpentine Soil	MSVMLICLVLWAATGAVPLLFAAVLAGLRVLYVVLLTNL*
Ga0126314_112695481	3300010042	Serpentine Soil	MSVMLVSLILWAATGAVALLFAAVLAGLGVLYVVLLTNL*
Ga0126314_113738701	3300010042	Serpentine Soil	ALMSVMLVCLVLWAATGAVWLLFGAVLAGLGVLYVVLLTNL*
Ga0126310_100688865	3300010044	Serpentine Soil	VMLVCLVLWAATGVVPLLFGAVLAGLGVLYVVLLTNL*
Ga0126310_103039772	3300010044	Serpentine Soil	MLGWVVWGLLSVMLVCILLWAATGAVSLLFAAMLATLVMIYVVLFTNL*
Ga0126310_103522731	3300010044	Serpentine Soil	LVWVVWILLSVMLVCIVLWAATGAVALLFGAVLAGLGVLYVV
Ga0126310_105694272	3300010044	Serpentine Soil	MSVMLVCLVLWAATGAVPLLFAAVLATLVMIYEVLL
Ga0126310_106394371	3300010044	Serpentine Soil	MLVCLLLWAATGAVALLFAAVLAGLGVLYVVLFTNL*
Ga0126310_106683221	3300010044	Serpentine Soil	LVWVFWVLLSVMLVSIVLWALTGTVALLFAAVLAGLGVLYLVLFTNL*
Ga0126310_106845312	3300010044	Serpentine Soil	MSVMLVCLVLWAAAGAVALLFTAVLAALGVLYVVLLLNR*
Ga0126310_115466372	3300010044	Serpentine Soil	MSVMLICLVLWAATGAVPLLFAAVLAGLRVLYVVLLINL*
Ga0126310_116905481	3300010044	Serpentine Soil	MSVMLICLVLWAATGAVPLLFAAVLAGLRVLYEVLLINR*
Ga0126311_101705092	3300010045	Serpentine Soil	MLLCLLLWALTGSVPLLFAAVLAGLGVLYVVLFTNL*
Ga0126311_104391612	3300010045	Serpentine Soil	MSVMLVSLVLWAATGSVALLFGAVLAGLGVLYVVLLTNL*
Ga0126311_105433361	3300010045	Serpentine Soil	MSVMLICLVLWAATGAVPLLFAAVLAGLRMLYVVLLTNL*
Ga0126311_106744092	3300010045	Serpentine Soil	MSVMLLCLVLWAATGAVALLFAAVLAALGVLYVVLLTNL*
Ga0126311_107437041	3300010045	Serpentine Soil	KGNTIGWVVWALMSVMLICLVLWAATGAVPLLFAAVLAGLRVLYEVLLINR*
Ga0126311_109357961	3300010045	Serpentine Soil	LVWVFWVLLSVMLVSIVLWALTGTVTLLFAAVLAGLGGLYLMLFTNL*
Ga0126311_118669062	3300010045	Serpentine Soil	WVLLSVMLVCLLLWAATGAVALLFGAVLATLVMIYVVLFTNL*
Ga0126306_100537932	3300010166	Serpentine Soil	LGWVIWGLLSVMLVCLVLWVATGAVPLLFPAVLGALVMLYTVLLTNL*
Ga0126306_100830123	3300010166	Serpentine Soil	MSVMLICLVLWAATGAVALLFAAVLAGLRVLYVVLLINR*
Ga0126306_102122922	3300010166	Serpentine Soil	MLVCLVLWVATGAVALLFAAVLAALVMLYLVLFTNL*
Ga0126306_103697352	3300010166	Serpentine Soil	MSVMLVCLLLWATTGAVWLLFAAVLAGLGVLYVVLFTNL*
Ga0126306_105701782	3300010166	Serpentine Soil	MLVCLLLWALTGTVALLFAAVLAGLGGLYVVLFTNL*
Ga0126306_107904651	3300010166	Serpentine Soil	MTVMLVCLVLWAATGAVALLFAAVLAGLGVLYVVLLTNL*
Ga0126306_109932092	3300010166	Serpentine Soil	WVLLSVLLVCLVLWAATSSFPLLVAAVLAGLGGLCVVLFTNL*
Ga0126306_110811422	3300010166	Serpentine Soil	LVWVVWILLSVMLVCLLLWASTGAVALLFAAVLAGLGVLYVVLLTNL*
Ga0126306_112397122	3300010166	Serpentine Soil	MSVMLVCLALWASTGAVALLFAAVLAGLGVLYVVLLTNL*
Ga0126306_112932211	3300010166	Serpentine Soil	MLVCLVLWALTGAIPLLFAAVVAGLGVLYMVLFTNS*
Ga0126306_117890361	3300010166	Serpentine Soil	SVMLVCLLLWASTGAVALLFAAVLAGLGVLYVVLLTNL*
Ga0182000_101027311	3300014487	Soil	MSVMLVCIVLWAATGAFALLFCAVLAGLGVLYVVL
Ga0182000_104919232	3300014487	Soil	LVWVVWISLSVMLVCIVLWALTGTVPLLFAAVLAGLGGLYVALFTNL*
Ga0190265_114674771	3300018422	Soil	TLGWVVWALMSVMVVCLLLWAATGAVALLFAAVLAALGVLYVVLLINL
Ga0190275_113086732	3300018432	Soil	LMSVMLLCLVLWAATGAVWLLFGAVVAGLGVLYMVLLTNL
Ga0190270_101167682	3300018469	Soil	MSVMLICLVLWAATGAVPLLFAAVLAGLRVLYVVLLINR
Ga0190270_103225933	3300018469	Soil	WVVWASMSVMLVCLLLWAATGAVWLLFGAVLAGLGVLYVVLLTNL
Ga0190274_115306841	3300018476	Soil	MSVMLVCLVLWAATGAVALLFAAVLAALGVLYVVLLTNL
Ga0190264_109209862	3300019377	Soil	MSVMLVCLLLWAATGAVPLLFAAVLAGLGVLYVVLLTNL
Ga0190267_100948453	3300019767	Soil	LMSVMLICLVLWAATGAVPLLFAAVLAGLRVLYVVLLINR
Ga0190267_107308141	3300019767	Soil	MSVMVVCLLLWAATGAFALLFAAVLAALGVLYVVLLTNL
Ga0209461_101024462	3300027750	Agave	MSVMLVCLVLWAATGAVVLLFAAVLAALGVLYVVLLTNL
Ga0268243_10392272	3300030510	Soil	MSVMLVCLVLWAATGAVALLFGAVLAALGVLYVVLLTNL
Ga0268243_11476112	3300030510	Soil	MSVMVVCLLLWAATGAFALLFGAVLAALGVLYVVLL
Ga0268255_102131761	3300030516	Agave	MSVMLVCIVLWAATGALPLLFGAVVAGLGVLYVVLLTNL
Ga0307405_115837172	3300031731	Rhizosphere	LMSVMLVCLLLWAATGAVALLFAAVLAALGVLYVVLLTNL
Ga0307412_111320232	3300031911	Rhizosphere	MSVMLVCLVLWAATGAVWLLFGAVLAALGVLYVVLLTNL
Ga0307412_112685022	3300031911	Rhizosphere	LGWVIWGLLSVMLVCLVLWAATGAVWLLFGAVLAALGVLYVVLL
Ga0307416_1018117642	3300032002	Rhizosphere	WVVWALMSVMLLCLVLWAATGAVWLLFGAVVAGLRVLYVVLLINR
Ga0307414_118613411	3300032004	Rhizosphere	MSVMLVCLVLWATTGAVALLFGAVLAGLGVLYVVLLTNL
Ga0307415_1004842252	3300032126	Rhizosphere	VWALMSVMLLCLVLWAATGAVWLLFGAVVAGLGVLYMVLLTNL
Ga0268251_100367302	3300032159	Agave	MSVMLVCLLLWAATGAVVLLFAAVLAALGVLYVVLLTNL
Ga0268251_100966292	3300032159	Agave	LMSVMLVCLVLWAATGAVALLFGAVLAALGVLYMVLLTNL
Ga0268251_102331061	3300032159	Agave	LMSVMLVCLVLWAATGAVPLFFAAVVAGLGVLYVVLLTNL
Ga0268251_103248551	3300032159	Agave	LMSVMLVCLVLWAATGAVALLFGAVLAGLGVLYVVLLTNL
Ga0268251_103314061	3300032159	Agave	LMSVMLVCLVLWAATGAAALLFGAVLAALGVLYVVLLTNL
Ga0268251_103963462	3300032159	Agave	LMSVMLICLVLWAATGAVVLLFAAVLAALGVLYVVLLTNL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F068108

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences