NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F068170

Metagenome / Metatranscriptome Family F068170

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F068170
Family Type Metagenome / Metatranscriptome
Number of Sequences 125
Average Sequence Length 58 residues
Representative Sequence RLARLGCRLINTARSGPVSVAWHDGGPLFPHPVELHQHNDVIAGMHARLCALRDGCRT
Number of Associated Samples 112
Number of Associated Scaffolds 125

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.95 %
% of genes near scaffold ends (potentially truncated) 82.40 %
% of genes from short scaffolds (< 2000 bps) 75.20 %
Associated GOLD sequencing projects 106
AlphaFold2 3D model prediction Yes
3D model pTM-score0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (76.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(17.600 % of family members)
Environment Ontology (ENVO) Unclassified
(22.400 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(55.200 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 19.77%    β-sheet: 19.77%    Coil/Unstructured: 60.47%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.54
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 125 Family Scaffolds
PF01565FAD_binding_4 38.40
PF08241Methyltransf_11 20.00
PF08031BBE 5.60
PF02900LigB 2.40
PF13649Methyltransf_25 2.40
PF02782FGGY_C 1.60
PF02776TPP_enzyme_N 1.60
PF13561adh_short_C2 1.60
PF00296Bac_luciferase 1.60
PF00583Acetyltransf_1 1.60
PF12847Methyltransf_18 0.80
PF00313CSD 0.80
PF02353CMAS 0.80
PF01494FAD_binding_3 0.80
PF03703bPH_2 0.80
PF00232Glyco_hydro_1 0.80
PF12695Abhydrolase_5 0.80
PF00890FAD_binding_2 0.80

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 125 Family Scaffolds
COG0277FAD/FMN-containing lactate dehydrogenase/glycolate oxidaseEnergy production and conversion [C] 5.60
COG06542-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductasesEnergy production and conversion [C] 1.60
COG2141Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)Coenzyme transport and metabolism [H] 1.60
COG0578Glycerol-3-phosphate dehydrogenaseEnergy production and conversion [C] 0.80
COG0644Dehydrogenase (flavoprotein)Energy production and conversion [C] 0.80
COG0665Glycine/D-amino acid oxidase (deaminating)Amino acid transport and metabolism [E] 0.80
COG2226Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenGCoenzyme transport and metabolism [H] 0.80
COG22272-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylaseCoenzyme transport and metabolism [H] 0.80
COG2230Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferasesLipid transport and metabolism [I] 0.80
COG2723Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidaseCarbohydrate transport and metabolism [G] 0.80
COG3402Uncharacterized membrane protein YdbS, contains bPH2 (bacterial pleckstrin homology) domainFunction unknown [S] 0.80
COG3428Uncharacterized membrane protein YdbT, contains bPH2 (bacterial pleckstrin homology) domainFunction unknown [S] 0.80

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms76.00 %
UnclassifiedrootN/A24.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2170459010|GIO7OMY02IT0VIAll Organisms → cellular organisms → Bacteria504Open in IMG/M
3300004082|Ga0062384_100161887All Organisms → cellular organisms → Bacteria → Terrabacteria group1281Open in IMG/M
3300005181|Ga0066678_10787661All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria629Open in IMG/M
3300005187|Ga0066675_10362176All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1063Open in IMG/M
3300005332|Ga0066388_100333816All Organisms → cellular organisms → Bacteria2162Open in IMG/M
3300005441|Ga0070700_100198257All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1408Open in IMG/M
3300005549|Ga0070704_100944715All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria777Open in IMG/M
3300005560|Ga0066670_10084585All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium1739Open in IMG/M
3300005577|Ga0068857_100119652All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium2370Open in IMG/M
3300005591|Ga0070761_10544517All Organisms → cellular organisms → Bacteria719Open in IMG/M
3300005602|Ga0070762_10160438All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales1352Open in IMG/M
3300006028|Ga0070717_10716580All Organisms → cellular organisms → Bacteria → Terrabacteria group909Open in IMG/M
3300006163|Ga0070715_10531175All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria678Open in IMG/M
3300006173|Ga0070716_100320038Not Available1086Open in IMG/M
3300006174|Ga0075014_100697843All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria590Open in IMG/M
3300006176|Ga0070765_100163130All Organisms → cellular organisms → Bacteria1998Open in IMG/M
3300006358|Ga0068871_101649600All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria607Open in IMG/M
3300006755|Ga0079222_10146018All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1336Open in IMG/M
3300006804|Ga0079221_10448766All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria818Open in IMG/M
3300006806|Ga0079220_11159086All Organisms → cellular organisms → Bacteria633Open in IMG/M
3300006806|Ga0079220_11960916Not Available521Open in IMG/M
3300006854|Ga0075425_101328683Not Available815Open in IMG/M
3300006914|Ga0075436_101427738All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia525Open in IMG/M
3300009011|Ga0105251_10218479All Organisms → cellular organisms → Bacteria → Terrabacteria group858Open in IMG/M
3300009098|Ga0105245_10251964All Organisms → cellular organisms → Bacteria1715Open in IMG/M
3300009520|Ga0116214_1204432All Organisms → cellular organisms → Bacteria743Open in IMG/M
3300009545|Ga0105237_12231544All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria557Open in IMG/M
3300009698|Ga0116216_10687396All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria615Open in IMG/M
3300010371|Ga0134125_10683512All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1132Open in IMG/M
3300010375|Ga0105239_11343450All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria825Open in IMG/M
3300010396|Ga0134126_10929508All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia977Open in IMG/M
3300010396|Ga0134126_12248415All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria595Open in IMG/M
3300010876|Ga0126361_10457898All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2115Open in IMG/M
3300012210|Ga0137378_10495532All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1128Open in IMG/M
3300012357|Ga0137384_10372954All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1181Open in IMG/M
3300012960|Ga0164301_10805167All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria719Open in IMG/M
3300013102|Ga0157371_11491670All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria527Open in IMG/M
3300013296|Ga0157374_11957263All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia612Open in IMG/M
3300016422|Ga0182039_11569308Not Available600Open in IMG/M
3300017970|Ga0187783_10116476All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1970Open in IMG/M
3300017974|Ga0187777_11333615Not Available528Open in IMG/M
3300018040|Ga0187862_10735103All Organisms → cellular organisms → Bacteria575Open in IMG/M
3300020581|Ga0210399_11086297All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria641Open in IMG/M
3300020582|Ga0210395_10758227All Organisms → cellular organisms → Bacteria725Open in IMG/M
3300021171|Ga0210405_10130867All Organisms → cellular organisms → Bacteria1984Open in IMG/M
3300021178|Ga0210408_10707878All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria793Open in IMG/M
3300021180|Ga0210396_10116853All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales2408Open in IMG/M
3300021181|Ga0210388_11533971All Organisms → cellular organisms → Bacteria555Open in IMG/M
3300021181|Ga0210388_11682323All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia525Open in IMG/M
3300021401|Ga0210393_10529504All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria963Open in IMG/M
3300021402|Ga0210385_10170035All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1570Open in IMG/M
3300021405|Ga0210387_11845642All Organisms → cellular organisms → Bacteria508Open in IMG/M
3300021407|Ga0210383_11007035All Organisms → cellular organisms → Bacteria706Open in IMG/M
3300021407|Ga0210383_11707403All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria515Open in IMG/M
3300021433|Ga0210391_10094478All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales2359Open in IMG/M
3300021433|Ga0210391_11585965All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia501Open in IMG/M
3300021474|Ga0210390_10490453Not Available1035Open in IMG/M
3300021479|Ga0210410_11423733All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium586Open in IMG/M
3300022756|Ga0222622_11234103All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia550Open in IMG/M
3300024249|Ga0247676_1077263All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria551Open in IMG/M
3300024283|Ga0247670_1110719All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria509Open in IMG/M
3300024347|Ga0179591_1135136All Organisms → cellular organisms → Bacteria2054Open in IMG/M
3300025898|Ga0207692_10188380All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1206Open in IMG/M
3300025927|Ga0207687_11112007All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria679Open in IMG/M
3300025936|Ga0207670_10098831All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD00592081Open in IMG/M
3300026035|Ga0207703_11366231All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → unclassified Streptosporangiaceae → Streptosporangiaceae bacterium NEAU-GS5681Open in IMG/M
3300026035|Ga0207703_11537814All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria640Open in IMG/M
3300026095|Ga0207676_10280196All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1513Open in IMG/M
3300026214|Ga0209838_1030919All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia761Open in IMG/M
3300027096|Ga0208099_1018167All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria976Open in IMG/M
3300027158|Ga0208725_1027135Not Available910Open in IMG/M
3300027855|Ga0209693_10168001Not Available1082Open in IMG/M
3300027884|Ga0209275_10079526All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1641Open in IMG/M
3300027903|Ga0209488_10281852All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales1243Open in IMG/M
3300027915|Ga0209069_10639336All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria618Open in IMG/M
3300028380|Ga0268265_11674719All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria642Open in IMG/M
3300028773|Ga0302234_10325651All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria659Open in IMG/M
3300028780|Ga0302225_10220043All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria909Open in IMG/M
3300028784|Ga0307282_10514991All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria581Open in IMG/M
3300028807|Ga0307305_10034940All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD00592304Open in IMG/M
3300028807|Ga0307305_10445049All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria583Open in IMG/M
3300028879|Ga0302229_10128077All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1185Open in IMG/M
3300028906|Ga0308309_11148988All Organisms → cellular organisms → Bacteria670Open in IMG/M
3300030043|Ga0302306_10355316All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria561Open in IMG/M
3300030053|Ga0302177_10515972All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria616Open in IMG/M
3300030056|Ga0302181_10057756All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2017Open in IMG/M
3300030490|Ga0302184_10010536All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD00595332Open in IMG/M
3300030494|Ga0310037_10460843Not Available519Open in IMG/M
3300030618|Ga0311354_11489564Not Available599Open in IMG/M
3300030706|Ga0310039_10168095All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria878Open in IMG/M
3300031027|Ga0302308_10230300All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1173Open in IMG/M
3300031028|Ga0302180_10324884All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria786Open in IMG/M
3300031234|Ga0302325_10208555All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD00593346Open in IMG/M
3300031236|Ga0302324_100588736All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1598Open in IMG/M
3300031708|Ga0310686_105350632All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1452Open in IMG/M
3300031823|Ga0307478_11374008All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria586Open in IMG/M
3300031846|Ga0318512_10681474All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria526Open in IMG/M
3300031860|Ga0318495_10382677All Organisms → cellular organisms → Bacteria621Open in IMG/M
3300031910|Ga0306923_12224102All Organisms → cellular organisms → Bacteria549Open in IMG/M
3300032261|Ga0306920_104014305All Organisms → cellular organisms → Bacteria534Open in IMG/M
3300032895|Ga0335074_11099926All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria685Open in IMG/M
3300033134|Ga0335073_11190521All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia766Open in IMG/M
3300033134|Ga0335073_12148481All Organisms → cellular organisms → Bacteria503Open in IMG/M
3300034163|Ga0370515_0322112All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria653Open in IMG/M
3300034817|Ga0373948_0193800All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria527Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil17.60%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa12.00%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere6.40%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil5.60%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil4.80%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil4.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere4.00%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil3.20%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil3.20%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds2.40%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil2.40%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil2.40%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.40%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil2.40%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil2.40%
Grass SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil1.60%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil1.60%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland1.60%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil1.60%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.60%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.60%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.60%
Boreal Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil1.60%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland0.80%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil0.80%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.80%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil0.80%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.80%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Soil0.80%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.80%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.80%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.80%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.80%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.80%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.80%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.80%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.80%
Rhizosphere SoilHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil0.80%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2170459010Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)EnvironmentalOpen in IMG/M
3300003505Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)EnvironmentalOpen in IMG/M
3300004082Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3EnvironmentalOpen in IMG/M
3300005181Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127EnvironmentalOpen in IMG/M
3300005187Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005441Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaGEnvironmentalOpen in IMG/M
3300005535Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaGEnvironmentalOpen in IMG/M
3300005549Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaGEnvironmentalOpen in IMG/M
3300005560Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119EnvironmentalOpen in IMG/M
3300005577Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2Host-AssociatedOpen in IMG/M
3300005591Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1EnvironmentalOpen in IMG/M
3300005602Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2EnvironmentalOpen in IMG/M
3300005842Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2Host-AssociatedOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006163Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaGEnvironmentalOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006174Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014EnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006358Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2Host-AssociatedOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300006804Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200EnvironmentalOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006914Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5Host-AssociatedOpen in IMG/M
3300009011Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaGHost-AssociatedOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300009520Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaGEnvironmentalOpen in IMG/M
3300009545Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaGHost-AssociatedOpen in IMG/M
3300009698Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaGEnvironmentalOpen in IMG/M
3300009839Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaGEnvironmentalOpen in IMG/M
3300010326Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010375Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaGHost-AssociatedOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300010876Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300010880Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300012210Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012357Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300013102Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaGHost-AssociatedOpen in IMG/M
3300013296Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaGHost-AssociatedOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300016422Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111EnvironmentalOpen in IMG/M
3300017970Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300017974Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MGEnvironmentalOpen in IMG/M
3300018040Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150EnvironmentalOpen in IMG/M
3300019879Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2EnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021180Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-OEnvironmentalOpen in IMG/M
3300021181Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-OEnvironmentalOpen in IMG/M
3300021401Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-OEnvironmentalOpen in IMG/M
3300021402Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-OEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021407Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-OEnvironmentalOpen in IMG/M
3300021433Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-OEnvironmentalOpen in IMG/M
3300021474Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-OEnvironmentalOpen in IMG/M
3300021475Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-OEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300022756Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1EnvironmentalOpen in IMG/M
3300024249Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK17EnvironmentalOpen in IMG/M
3300024283Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK11EnvironmentalOpen in IMG/M
3300024347Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300025898Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025927Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025936Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025939Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026035Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026095Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026214Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-047 (SPAdes)EnvironmentalOpen in IMG/M
3300027096Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF043 (SPAdes)EnvironmentalOpen in IMG/M
3300027158Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF011 (SPAdes)EnvironmentalOpen in IMG/M
3300027855Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)EnvironmentalOpen in IMG/M
3300027884Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)EnvironmentalOpen in IMG/M
3300027903Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)EnvironmentalOpen in IMG/M
3300027911Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)EnvironmentalOpen in IMG/M
3300027915Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)EnvironmentalOpen in IMG/M
3300028380Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028747Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_2EnvironmentalOpen in IMG/M
3300028773Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_2EnvironmentalOpen in IMG/M
3300028780Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2EnvironmentalOpen in IMG/M
3300028784Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121EnvironmentalOpen in IMG/M
3300028807Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186EnvironmentalOpen in IMG/M
3300028879Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_3EnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300030007I_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300030043Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_1EnvironmentalOpen in IMG/M
3300030053Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2EnvironmentalOpen in IMG/M
3300030056Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_3EnvironmentalOpen in IMG/M
3300030490Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_3EnvironmentalOpen in IMG/M
3300030494Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)EnvironmentalOpen in IMG/M
3300030618II_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030706Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG (v2)EnvironmentalOpen in IMG/M
3300031027Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_3EnvironmentalOpen in IMG/M
3300031028Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2EnvironmentalOpen in IMG/M
3300031234Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2EnvironmentalOpen in IMG/M
3300031236Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300031846Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19EnvironmentalOpen in IMG/M
3300031860Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25EnvironmentalOpen in IMG/M
3300031910Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300032895Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3EnvironmentalOpen in IMG/M
3300033134Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2EnvironmentalOpen in IMG/M
3300034163Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14EnvironmentalOpen in IMG/M
3300034817Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
F62_077780502170459010Grass SoilPDLPRESARLARLGCRLINTARTGPVSVAWHDGGPLFPHPVEVHQHNDVIAGMHARLCGLRMPGDRSPPDGAA
F62_075415002170459010Grass SoilPTCPRESARLARLGCRLINTARTGPVSVAWHDGGPLFPHPVEVHQHNDVIAGMHARLCGLRMPGDRSPPDGAA
JGIcombinedJ51221_1011688813300003505Forest SoilVSWVVPDVKEESARLARLGCRLINTARSGPIDVAWHEGGPLFAHPVELHQHNDVIDGMHARLAALRG*
Ga0062384_10016188713300004082Bog Forest SoilEESARLAGLGCRLINTARSGPIDVAWHDGGPLFAHPVELHQHNDVIDGMHARLAALRG*
Ga0066678_1078766113300005181SoilRLARLGCRLINTARSGPVSVAWHDGGPLFPHPVELHQHNDVIAGMHARLCALRDGCRT*
Ga0066675_1036217613300005187SoilLERLGCRLINTARSGPISVAWHDGGPLFPHPVELHQHNDVIAGMHARLCALRTPQDGSAADGAT*
Ga0066388_10033381633300005332Tropical Forest SoilRLINTARSGPISVAWHDGGPLFPHPVELHQHNDVIAGMHSHLRGLRENPSVR*
Ga0066388_10184046813300005332Tropical Forest SoilARTGPISVAWHHGGPLFPHPIELHQHNDVIAGMHGRLAALREDRR*
Ga0070700_10019825713300005441Corn, Switchgrass And Miscanthus RhizosphereRLARLGCQLINTARSGPISVAWHEGGPLFPHPVELHQHNDVIAGMHARLCALRDGSRT*
Ga0070684_10064976823300005535Corn RhizosphereARTGPISVAWHSGGPLFPHPIELHQRNDVIDSMHQRLVARRTF*
Ga0070704_10094471523300005549Corn, Switchgrass And Miscanthus RhizosphereLGCQLINTARSGPISVAWHEGGPLFPHPIELHQHNDVIAGMHARLCALRDGCRT*
Ga0066670_1008458513300005560SoilGCRLINTARSGPISVAWHDGGPLFPHPVELHQHNDVIAGMHARLCALRTPQDGSAADGAT
Ga0068857_10011965233300005577Corn RhizosphereLINTARSGPISVAWHEGGPLFPHPVELHQHNDVIAGMHARLCALRDGSRT*
Ga0070761_1054451713300005591SoilPDLAAESARLEGLGCPLINTARSGPISVAWHHGGPLFPHPVEVHEHNDVIAGMHYRLVALRAAADW*
Ga0070762_1016043833300005602SoilCRLINTARSGPISVAWHDGGPLFPHPIEVHQRNSVIDGMHDRLVALRAGEDR*
Ga0068858_10156498023300005842Switchgrass RhizosphereNTARSGPISVAWHTGGPLFPHPIELHQSNDVIHSMHERLVARRAR*
Ga0070717_1071658023300006028Corn, Switchgrass And Miscanthus RhizosphereAETARLTDLGCRLINTARSGPISVAWHSGGPLFPHPIELHQRNDVIDSMHQRLVARRTF*
Ga0070715_1053117513300006163Corn, Switchgrass And Miscanthus RhizosphereESARLARLGCRLINTARTGPVSVAWHDGGPLFPHPVEVHQHNDVIAGMHARLCALRGPGDRSPADGTA*
Ga0070716_10032003813300006173Corn, Switchgrass And Miscanthus RhizosphereERLGCQLINTARSGPISVAWHDGGPLFPHPVEIHQHNDVIAGMHGRLAALREGSQS*
Ga0075014_10069784323300006174WatershedsLGCRLINTARSGPIDVAWHDGGPLFAHPIELHQHNDVIDGMHDRLAALRG*
Ga0070765_10016313013300006176SoilCRLINTARSGPVEVAWHHGGPLFAHPVELHRRNDVIDGMHARLAALGG*
Ga0068871_10164960013300006358Miscanthus RhizosphereSARLERLGCQLINTARSGPISVAWHEGGPLFLHPVELHQHNDVIAGMHARLCALRDGSRT
Ga0079222_1014601813300006755Agricultural SoilVEQESARLARLGCRIINTATSGPISVAWHEGSPLFPHPIELHQHNDVIAGMHDRLVALRAGG*
Ga0079221_1044876613300006804Agricultural SoilRLARLGCQIINTATSGPISVAWHEGGPLFPHPIELHEHNAVIAGMHGRLVALRAGG*
Ga0079220_1115908613300006806Agricultural SoilLGCTPINTARTGPISVAWHHGGPLFPHPIELHQYNDIIAGMHASLCAGAPF*
Ga0079220_1196091623300006806Agricultural SoilERESVRLERLGCRLINTARTGPISVAWHDGGPLFPHPIELHQHNEIIAGLHGRLAALREDSRG*
Ga0075425_10132868313300006854Populus RhizosphereLERLGCQLINTARSGPISVAWHDGGPLFPHPVELHQHNDVIAGMHGRLAALREGSQS*
Ga0075436_10142773823300006914Populus RhizosphereARLIDLGCRLINTARTGPISVAWHSGGPLFPHPIELHQRNDVIDSMHQRLVARRTF*
Ga0105251_1021847923300009011Switchgrass RhizosphereETARLTDLGCRLINTARSGPISVAWHSGGPLFPHPIELHQRNDVIDSMHQRLVARRTF*
Ga0105245_1025196413300009098Miscanthus RhizosphereQESARLERLGCQLINTARSGPISVAWHDGGPLFPHPVELHQHNDVIAGMHARLCALHMPGDRSPADGAA*
Ga0116214_120443213300009520Peatlands SoilLINTARSGPIEVAWHDGGPLFGHPVELHQHNDVIAGLHGRLTALRG*
Ga0105237_1223154423300009545Corn RhizosphereDVGQESARLKRLGCQLINTARSGPISVAWHEGGPLFPHPIELHQHNDVIAGMHARLCALRDGCRT*
Ga0116216_1068739623300009698Peatlands SoilRLGCRPINTARSGPISVAWHDGGPLFPHPIELHQHNDVIAGMHDRLAALRRADDR*
Ga0116223_1025475423300009839Peatlands SoilVSWVVPDVEQESARLARLGCRPINTARSGPISVAWHDGGPLFPHPIELHQHNDVIAGMHDRLAALRRADDR*
Ga0134065_1040037723300010326Grasslands SoilDVEQESARLERLGCRLINTARSGPISVAWHDGGPLFPHPVELHQHNDVIAGMHARLCALRTPQDGSAADGAT*
Ga0134125_1068351223300010371Terrestrial SoilCQLINTARSGPISVAWHEGGPLFPHPVELHQHNDVIAGMHARLCALRDGSRT*
Ga0105239_1134345023300010375Corn RhizosphereERLGCQLINTARSGPISVAWHEGGPLFPHPVELHQHNNVIAGMHARLCALRDGSRT*
Ga0134126_1092950813300010396Terrestrial SoilSARLERLGCQLINTARSGPISVAWHDGGPLFPHPVELHQHNDVIAGMHGRLAALREGSQS
Ga0134126_1224841513300010396Terrestrial SoilTARSGPISVAWHEGGPLFPHPVELHQHNDVIAGMHARLCALRDGCRT*
Ga0126361_1045789843300010876Boreal Forest SoilVVPDVREESARLARLGCRLINTARSGPVDVAWHDGGPLFGHPVELHQHNDVIDGMHARLAALRG*
Ga0126350_1014456113300010880Boreal Forest SoilIEVAWHDGGPLFPHPIELHQHNDVIAGMHARLTALRDSDNDSDHSRP*
Ga0137378_1049553223300012210Vadose Zone SoilGCRLINTARSGPISVAWHDGGPLFPHPVELHQHNDVIAGMHGRLCALRTPGDRSPEDGAA
Ga0137384_1037295413300012357Vadose Zone SoilEESARLARLGCRLINTARTGPVSVAWHEGGPLFPHPVEVHQHNDVIAGMHARLCALRVPGDRSPADGAA*
Ga0164301_1080516723300012960SoilQESARLERLGCQLINTARSGPISVAWHEGGPLFPHPVELHQHNDVIAGMHGRLCALRDGCPT*
Ga0157371_1149167013300013102Corn RhizosphereQESVRLARLGCRPINTARSGPITVAWHDGGPLFPHPVEIHQPNDVIAGMHGRLASLRDDSRP*
Ga0157374_1195726323300013296Miscanthus RhizosphereINTARSGPISVAWHAGGPLCPHPVELHQHNDVIAGMHARLCALRDGCRT*
Ga0163162_1343379713300013306Switchgrass RhizosphereDLRQDIARLARLGWRLINTARTGPVSVAWHDGGPLFPHPVEVHQHNDVIAGMHARLCALRGPGDRSPADGTA*
Ga0182039_1156930813300016422SoilNTARSGPIHVAWHDGGPLFPHPVELHQHNDVIAGMHGRLVALRSAARA
Ga0187783_1011647623300017970Tropical PeatlandLAGLGCRLINTARSGPIEVAWHDGGPLFGHPVELHQHNDVIAGMHDRLVALRG
Ga0187777_1133361523300017974Tropical PeatlandLINTARSGPISVAWHEGGPLFPHPVELHQHNEAIAGMHHRLTALRAVGDR
Ga0187862_1073510323300018040PeatlandLGCRMINTARSGPISVAWHDGGPLFPHPVELHQHNDVIAGLHDRLVALVALDDR
Ga0193723_115752313300019879SoilSWVVPDVEQESARLARLGCQLINTARSGPISVAWHDGGPLFPHPVELHQHNDVIAGMHARLCALRDGCRT
Ga0210399_1108629713300020581SoilVPDITQESARLARLGCRLINTARSGPISVAWHHGGPLFPHPIELHQHNDVIAGMHDRLVALRPSDGR
Ga0210395_1075822713300020582SoilPDVEQESARLARLGCRLINTARSGPISVAWHDGGPLFPHPIEVHQHNDVIAAMHGRLAALRPDNSQ
Ga0210405_1013086733300021171SoilRLINTARSGLIDVAWHDGGPLFAHPVELHQHNDVIDGMHARLAALRG
Ga0210408_1070787813300021178SoilPDVGEESARLARLGCRLINTARPGPIEVAWHDGGPLFGHPVELHQHNDVIAGMHARLVALQD
Ga0210396_1011685333300021180SoilIVPDITQESARLARLGCRLINTARSGPISVAWHHGGPLFPHPIELHQHNDVIAGMHDRLVALRPSDGR
Ga0210388_1153397123300021181SoilKAKAHGWQLGCGLINTARSGPISVAWHDGGPLFPHPIELHEQNDVICGMHDRLLALRSAGDGR
Ga0210388_1168232313300021181SoilGCALINTARSGPISVAWHSGGPLFPHPIELHQRNEAITGLHGRLAALRADEDR
Ga0210393_1052950423300021401SoilSWVVPDVGQESARLERLGCQLINTARSGPISVAWHDGGPLFPHPVELHQHNDVIAGMHARLCALRDGCRT
Ga0210385_1017003533300021402SoilLTRLGCRLINTARSGPIDVAWHHGGPLFAHPVELHQHNDVIDGMHARLAALRG
Ga0210387_1184564223300021405SoilDVAQESARLARLGCRPINTARSGPISVAWHDGGPLFPHPIEVHQHNDVIAAMHGRLAALRPDNSR
Ga0210383_1100703513300021407SoilKAESARLARLGCRLINTARSGPVEVAWHHGGPLFAHPVELHRRNDVIDGMHARLAALNG
Ga0210383_1170740323300021407SoilEQESARLARLGCRLINTARSGPISVAWHHGGSLFPHPIELHHHNDVIAGMHDRLVALRPSHDR
Ga0210391_1009447833300021433SoilVPDITQESARLARLGCRLINTARSGPISVAWHHGGPLFPHPIELHQHNDVIAGMHDRLVALRPSDDR
Ga0210391_1158596523300021433SoilARSGPIEVAWHHGGPLFPHPVEVHEHNDVIAGMHYRLVALRAAADW
Ga0210390_1049045313300021474SoilVKAESARLARLGCRLINTARSGPVEVAWHHGGPLFAHPVELHRRNDVIDGMHARLAALNG
Ga0210392_1143866123300021475SoilRTGPIQVAWHDGGPLFPHPIELHQHNDVIAGMHARLAALRDRDSHRDDQNP
Ga0210402_1016387213300021478SoilVAPDLERESARLERLGCGLINTARTGPVSVARHHGGPLFPHPVEVHQHNDAIAGMHGRLYALRTPGDRAPAAGAA
Ga0210410_1142373313300021479SoilESARLARLGCRLINTARSGPVEVAWHHGGPLFAHPVELHRRNDVIDGMHARLVALGG
Ga0222622_1123410313300022756Groundwater SedimentVPDLDAESDRLRRLGCRPINTACTGPISVAWHHGGPLFPHPIEVHQHNDVIAGMHARL
Ga0247676_107726323300024249SoilRLGCHLINTARSGPISVAWHEGGPLFPHPVELHQHNDVIAGMHARLCALRDGCRT
Ga0247670_111071913300024283SoilCQLINTARSGPISVAWHEGGPLFPHPVELHQHNDVIAGMHARLCALRDGCRT
Ga0179591_113513633300024347Vadose Zone SoilVERESERLARLGCQLINTARSGPITVAWHDGGPLFPHPVELHQHNDVIAGMHARLASLREGSQS
Ga0207692_1018838033300025898Corn, Switchgrass And Miscanthus RhizospherePDVGQESARLERLGCQLINTARSGPISVAWHDGGPLFPHPVELHQHNDVIAGMHGRLAALREGSQS
Ga0207684_1172097913300025910Corn, Switchgrass And Miscanthus RhizosphereVVPDLAQESARLARLGCRLINTARTGPVSVAWHDGGPLFPHPVEVHQHNDVIAGMHARLCALRGPGDRSPADGAA
Ga0207687_1111200723300025927Miscanthus RhizosphereTARSGPISVAWHDGGPLFPHPVELHQHNDVIAGMHARLCALRDGCRT
Ga0207670_1009883113300025936Switchgrass RhizosphereVPDVGQESARLERLGCQLINTARSGPISVAWHEGGPLFPHPVELHQHNNVIAGMHARLCALRDGCRT
Ga0207665_1092672023300025939Corn, Switchgrass And Miscanthus RhizosphereARSGPISVAWHDGGPLFPHPVEIHQHNDVIAGMHGRLAALREGSQS
Ga0207703_1136623113300026035Switchgrass RhizosphereRLANLGCRLINTARSGPISVAWHTGGPLFPHPIELHQSNDVIHSMHERLVARRAR
Ga0207703_1153781413300026035Switchgrass RhizosphereARLGCRLINTARTGPVSVAWHDGGPLFPHPVEVHQHNDVIAGMHARLCALRGPGDRSPADGTA
Ga0207676_1028019623300026095Switchgrass RhizosphereGCRLINTARTGPVSVAWHDGGPLFPHPVEVHQHNDVIAGMHARLCALRGPGDRSPADGTA
Ga0209838_103091923300026214SoilAGLGCRPINTARTGPISVAWHDGGPLFPHPIEVHQDNEVIAGMHQRLCALRTNGGH
Ga0208099_101816723300027096Forest SoilRLGCRLINTARSGPISVAWHHGGPLFPHPIELHQHNDVIAGMHDRLVALRPSDDR
Ga0208725_102713523300027158Forest SoilPDLAAESARLEGLGCRLINTARSGPISVAWHHGGPLFPHPVEVHEHNDVIAGMHYRLVALRAAADW
Ga0209693_1016800113300027855SoilVPDVAAESERLTRLGCRLINTARSGPVSVAWHDGGPLFPHPIEVHQHNSVIDGMHDRLVALRSGEDR
Ga0209275_1007952613300027884SoilGRLAGLGCRLINTARSGPISVAWHDGGPLFPHPIEVHQRNSVIDGMHDRLVALRAGEDR
Ga0209488_1028185233300027903Vadose Zone SoilINTARTGPVSVAWHDGGPLFPHPVEVHQHNDVIAGLHARLCALRGPGDRSPADGAA
Ga0209698_1124030033300027911WatershedsINTARSGPIEVAWHDGGPLFGHPVELHQHNDVIAGMHARLVALRD
Ga0209069_1063933613300027915WatershedsVPDITQESARLARLGCRLINTARSGPISVAWHHGGPLFPHPIELHQHNDVIAGMHDRLVALRPSHDR
Ga0268265_1167471913300028380Switchgrass RhizosphereARLGCQLINTARSGPISVAWHDGGPLFPHPVEVHQHNDVIAGMHARLCALRGPGDRSPADGTA
Ga0302219_1008973413300028747PalsaRSGPISVAWHDGGPLFPHPIEVHQHNDAIAGMHDRLTALRAGENQCPA
Ga0302234_1032565113300028773PalsaARLARLGCRLINTARSGPISVAWHDGGPLFPHPIEVHQHNDVIAGMHDRLAALRGDEH
Ga0302225_1022004323300028780PalsaESARLARLGCRLINTARSGPISVAWHDGGPLFPHPIEVHQHNDAIAGMHDRLTALRADEDRCPT
Ga0307282_1051499113300028784SoilPDVEQESARLARLGCQLINTARSGPISVAWHDGGPLFPHPVELHQHNDVIAGMHARLCALRDGCRT
Ga0307305_1003494033300028807SoilLERLGCQLINTARSGPISVAWHEGGPLFPHPVELHQHNDVIAGMHARLCALRDGCRT
Ga0307305_1044504923300028807SoilQESARLARLGCQLINTARSGPISVAWHDGGPLFPHPVELHQHNDVIAGMHGRLASLRDDSRP
Ga0302229_1012807713300028879PalsaVPDVARESKRLTGLGCRPINTARTGPISVAWHEGGPLFPHPVEVHQDNEVIAGMHQQLCALRADGGY
Ga0308309_1045468613300028906SoilARSGPISVAWHDGGPLFPHPIELHQHNDVIAGMHDRLVALRPSDDR
Ga0308309_1114898823300028906SoilCRLINTARSGPVEVAWHHGGPLFAHPVELHRRNDVIDGMHARLAALGG
Ga0311338_1017446913300030007PalsaSWVVPDVAQESKRLTGLGCRPINTARTGPICVAWHDGGPLFPHPIEVHQDNEVIAGMHQQLCALRADGGH
Ga0302306_1035531623300030043PalsaRLINTARSGPISVAWHHGGPLFPHPIEVHQHNDVIAGMHDRLAALRGDEH
Ga0302177_1051597213300030053PalsaTRLGCRLINTARSGPISVAWHDGGPLFPHPIEVHQHNEVIAGMHDRLVALRAGEDQGPT
Ga0302181_1005775633300030056PalsaVAQERERLAGLGCRPINTARTGPISVAWHEGGPLFPHPIEVHQHNDVIAGMHQQLCALRADGGR
Ga0302181_1012591233300030056PalsaVVPDIEQESARLAGLGCALINTARSGPITVAWHDGGPLFPHPIEVHQRNEAICGMHGRLAALAALRADQGR
Ga0302184_1001053613300030490PalsaRLINTARSGPISVAWHDGGPLFPHPIEVHQHNDVIAGMHDRLAALRGDEH
Ga0310037_1046084313300030494Peatlands SoilRAGRLINTARSGPIEVAWHDGGPLFGHPVELHQHNDVIAGLHGRLTALRG
Ga0311354_1148956423300030618PalsaTGLGCRPINTARTGPICVAWHDGGPLFPHPIEVHQDNEVIAGMHQQLCALRADGGH
Ga0310039_1016809513300030706Peatlands SoilDLEQESARLARLGCRPINTARSGPISVAWHDGGPLFPHPIELHQHNDVIAGMHDRLAALRRADDR
Ga0302308_1023030013300031027PalsaGLGCALINTARSGPITVAWHDGGPLFPHPIEVHQRNEAICGMHGRLAALAALRADQGR
Ga0302180_1032488423300031028PalsaDVEQESTRLARLGCRLINTARTGPISVAWHDGGPLFPHPIEVHQHNDVIAGMHDRLTALRADEN
Ga0302325_1020855513300031234PalsaNTARSGPISVAWHDGGPLFPHPIEVHQHNDVIAGMHDRLTALRGDEL
Ga0302324_10058873613300031236PalsaARLGCRLINTARSGPISVAWHDGGPLFPHPIEVHQHNSVIAGMHDRLVALRADEDR
Ga0310686_10535063213300031708SoilLARLGCRLINTARSGPIEVAWHDGGPLFGHPVELHQHNDVIAGMHARLVALRD
Ga0307478_1137400823300031823Hardwood Forest SoilRLGCRLINTARSGPVDVAWHEGGPLFAHPVELHQHNDVIDGMHARLAALRG
Ga0318512_1068147413300031846SoilRESARLSRLGCRLINTARSGVISVAWHDGGPLFPHPIELHQDNEVIAGMHERLCAL
Ga0318495_1038267723300031860SoilLERLGCGLINTARSGPISVAWHHGGPLFAHPIELHEHNDVIAGMHDRLVALGALGANQ
Ga0306923_1222410223300031910SoilPDLQQESARLERLGCRLINTATTGPIRVAWHDGGPLFPHPVELHQHNDVIAGMHARLVALRADRPAGER
Ga0306920_10401430523300032261SoilGCRLINTATTGPIRVAWHDGGPLFPHPVELHQHNDVIAGMHARLVALRADRPAGER
Ga0335074_1109992613300032895SoilARLSRLGCRLINTARSGPITVAWHDGGPLFPHPVEIHQDNEVIAGMHDRLLALRTSGERAPQIVR
Ga0335073_1119052133300033134SoilLGCRLINTARSGPISVAWHDGGPLFPHPVELHQDNDVIAGMHGRLCALRAP
Ga0335073_1214848123300033134SoilLINTARTGPISVAWHDGGPLFAHPIEVHEHNSVIAGMHERLAALRAGQDR
Ga0370515_0054888_3_1463300034163Untreated Peat SoilTARTGPISVAWHEGGPLFPHPIEVHQHNDVIASMHRQLCGLRADKDL
Ga0370515_0322112_451_6513300034163Untreated Peat SoilEQESARLARLGCRLINTARSGPISVAWHDGGPLFPHPIEVHQHNEVIAGMHDRLVALRAGEDQGPT
Ga0373948_0193800_2_1723300034817Rhizosphere SoilERLGCQLINTARSGPISVAWHEGGPLFPHPVELHQHNDVIAGMHARLCALRDGCRT

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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