Metagenome / Metatranscriptome Family F068179

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F068179
Family Type	Metagenome / Metatranscriptome
Number of Sequences	125
Average Sequence Length	86 residues
Representative Sequence	MKALVLFAGFVIASTAAAVLIGTFIERQTSPQVGTIVMLAMFFGGIVVSWIATVFVMDGSLNNFYAEREQIEAERQGREYMERTSPRG
Number of Associated Samples	80
Number of Associated Scaffolds	125

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	79.20 %
% of genes near scaffold ends (potentially truncated)	32.80 %
% of genes from short scaffolds (< 2000 bps)	92.00 %
Associated GOLD sequencing projects	67
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (74.400 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (24.800 % of family members)
Environment Ontology (ENVO)	Unclassified (35.200 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (69.600 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 68.97% β-sheet: 0.00% Coil/Unstructured: 31.03%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.51
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.51
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 125 Family Scaffolds
PF14534	DUF4440	3.20
PF04392	ABC_sub_bind	2.40
PF00873	ACR_tran	1.60
PF03401	TctC	0.80
PF01135	PCMT	0.80
PF07690	MFS_1	0.80
PF00196	GerE	0.80
PF00149	Metallophos	0.80
PF02371	Transposase_20	0.80
PF07589	PEP-CTERM	0.80
PF02452	PemK_toxin	0.80
PF12680	SnoaL_2	0.80
PF00440	TetR_N	0.80
PF13242	Hydrolase_like	0.80
PF00563	EAL	0.80

COG ID	Name	Functional Category	% Frequency in 125 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	2.40
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	0.80
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	0.80
COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	Defense mechanisms [V]	0.80
COG2518	Protein-L-isoaspartate O-methyltransferase	Posttranslational modification, protein turnover, chaperones [O]	0.80
COG2519	tRNA A58 N-methylase Trm61	Translation, ribosomal structure and biogenesis [J]	0.80
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.80
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	0.80
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.80
COG4122	tRNA 5-hydroxyU34 O-methylase TrmR/YrrM	Translation, ribosomal structure and biogenesis [J]	0.80
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	0.80
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	0.80

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.40 %
All Organisms	root	All Organisms	25.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.40 %
cellular organisms	root	All Organisms → cellular organisms	25.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.40 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	25.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.40 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	17.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.40 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	8.00 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4.80 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.40 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	8.00 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4.80 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.40 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	8.00 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.60 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.80 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.40 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	8.00 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.60 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.80 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.40 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	8.00 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.60 %
Burkholderia cepacia complex	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex	0.80 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.40 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	8.00 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.60 %
Burkholderia pyrrocinia	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex → Burkholderia pyrrocinia	0.80 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.80 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2166559005\|cont_contig01192	All Organisms → cellular organisms → Bacteria → Proteobacteria	3065	Open in IMG/M
2170459002\|FZY7DQ102H4UG0	Not Available	506	Open in IMG/M
2170459003\|FZ032L002JV142	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100680268	Not Available	901	Open in IMG/M
3300000955\|JGI1027J12803_106861818	Not Available	655	Open in IMG/M
3300001545\|JGI12630J15595_10030540	Not Available	1115	Open in IMG/M
3300001545\|JGI12630J15595_10091168	Not Available	599	Open in IMG/M
3300002245\|JGIcombinedJ26739_100026392	All Organisms → cellular organisms → Bacteria → Proteobacteria	5078	Open in IMG/M
3300002245\|JGIcombinedJ26739_100029325	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4850	Open in IMG/M
3300002245\|JGIcombinedJ26739_100251106	Not Available	1656	Open in IMG/M
3300004152\|Ga0062386_100697478	Not Available	833	Open in IMG/M
3300004152\|Ga0062386_100879595	Not Available	740	Open in IMG/M
3300005165\|Ga0066869_10071526	Not Available	650	Open in IMG/M
3300005168\|Ga0066809_10231189	Not Available	510	Open in IMG/M
3300005332\|Ga0066388_100199310	All Organisms → cellular organisms → Bacteria → Proteobacteria	2621	Open in IMG/M
3300005332\|Ga0066388_100878029	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1478	Open in IMG/M
3300005435\|Ga0070714_102200094	Not Available	537	Open in IMG/M
3300005436\|Ga0070713_101628038	Not Available	627	Open in IMG/M
3300005518\|Ga0070699_101615171	Not Available	594	Open in IMG/M
3300005536\|Ga0070697_101254340	Not Available	661	Open in IMG/M
3300005764\|Ga0066903_100033012	All Organisms → cellular organisms → Bacteria	5910	Open in IMG/M
3300005764\|Ga0066903_100405965	Not Available	2245	Open in IMG/M
3300005764\|Ga0066903_100483245	All Organisms → cellular organisms → Bacteria	2089	Open in IMG/M
3300005764\|Ga0066903_100827500	Not Available	1661	Open in IMG/M
3300005764\|Ga0066903_101368523	Not Available	1327	Open in IMG/M
3300005764\|Ga0066903_102240438	Not Available	1054	Open in IMG/M
3300005764\|Ga0066903_104718861	Not Available	725	Open in IMG/M
3300005764\|Ga0066903_104829519	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	716	Open in IMG/M
3300005764\|Ga0066903_105460969	Not Available	670	Open in IMG/M
3300005764\|Ga0066903_107996827	Not Available	542	Open in IMG/M
3300006050\|Ga0075028_100745284	Not Available	593	Open in IMG/M
3300006057\|Ga0075026_100215439	Not Available	1016	Open in IMG/M
3300006163\|Ga0070715_10454184	Not Available	724	Open in IMG/M
3300006172\|Ga0075018_10047697	All Organisms → cellular organisms → Bacteria	1773	Open in IMG/M
3300006172\|Ga0075018_10256321	Not Available	849	Open in IMG/M
3300006172\|Ga0075018_10503921	All Organisms → cellular organisms → Bacteria → Proteobacteria	631	Open in IMG/M
3300006175\|Ga0070712_100334729	All Organisms → cellular organisms → Bacteria	1234	Open in IMG/M
3300006175\|Ga0070712_100526398	Not Available	994	Open in IMG/M
3300006354\|Ga0075021_10557570	Not Available	729	Open in IMG/M
3300006354\|Ga0075021_10998653	Not Available	546	Open in IMG/M
3300006603\|Ga0074064_11679446	Not Available	773	Open in IMG/M
3300006953\|Ga0074063_14014879	Not Available	1087	Open in IMG/M
3300009792\|Ga0126374_11176980	Not Available	612	Open in IMG/M
3300010043\|Ga0126380_10232791	Not Available	1261	Open in IMG/M
3300010358\|Ga0126370_10330836	Not Available	1222	Open in IMG/M
3300010358\|Ga0126370_10996709	Not Available	764	Open in IMG/M
3300010359\|Ga0126376_10996166	Not Available	838	Open in IMG/M
3300010376\|Ga0126381_100656737	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1497	Open in IMG/M
3300010376\|Ga0126381_101726169	Not Available	904	Open in IMG/M
3300011120\|Ga0150983_11849545	Not Available	902	Open in IMG/M
3300012951\|Ga0164300_10778781	Not Available	590	Open in IMG/M
3300012960\|Ga0164301_10137195	Not Available	1474	Open in IMG/M
3300012961\|Ga0164302_10539029	Not Available	833	Open in IMG/M
3300012971\|Ga0126369_13118201	Not Available	543	Open in IMG/M
3300012987\|Ga0164307_10961482	Not Available	692	Open in IMG/M
3300012989\|Ga0164305_10590533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	891	Open in IMG/M
3300015371\|Ga0132258_12270101	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1361	Open in IMG/M
3300015371\|Ga0132258_13857646	Not Available	1020	Open in IMG/M
3300015373\|Ga0132257_101872287	Not Available	772	Open in IMG/M
3300016270\|Ga0182036_10340234	Not Available	1153	Open in IMG/M
3300016270\|Ga0182036_10972271	Not Available	699	Open in IMG/M
3300016294\|Ga0182041_11206575	Not Available	690	Open in IMG/M
3300016294\|Ga0182041_11224478	Not Available	685	Open in IMG/M
3300016319\|Ga0182033_10127424	Not Available	1927	Open in IMG/M
3300016319\|Ga0182033_11293068	Not Available	655	Open in IMG/M
3300016319\|Ga0182033_12010944	Not Available	526	Open in IMG/M
3300016357\|Ga0182032_11520580	Not Available	581	Open in IMG/M
3300016371\|Ga0182034_11763776	Not Available	545	Open in IMG/M
3300016387\|Ga0182040_11885655	Not Available	512	Open in IMG/M
3300016404\|Ga0182037_10129012	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1873	Open in IMG/M
3300016404\|Ga0182037_10764876	Not Available	831	Open in IMG/M
3300016422\|Ga0182039_10184539	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1650	Open in IMG/M
3300016422\|Ga0182039_11818742	Not Available	558	Open in IMG/M
3300016445\|Ga0182038_11217626	Not Available	672	Open in IMG/M
3300020581\|Ga0210399_11163518	Not Available	614	Open in IMG/M
3300020581\|Ga0210399_11322674	Not Available	567	Open in IMG/M
3300021168\|Ga0210406_10146340	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1985	Open in IMG/M
3300021168\|Ga0210406_10474296	Not Available	993	Open in IMG/M
3300021168\|Ga0210406_11384615	Not Available	503	Open in IMG/M
3300021178\|Ga0210408_10279738	Not Available	1330	Open in IMG/M
3300021178\|Ga0210408_10889429	Not Available	694	Open in IMG/M
3300021178\|Ga0210408_10923838	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex → Burkholderia pyrrocinia	678	Open in IMG/M
3300021405\|Ga0210387_11313384	Not Available	625	Open in IMG/M
3300021478\|Ga0210402_10172113	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1982	Open in IMG/M
3300021478\|Ga0210402_11637489	Not Available	570	Open in IMG/M
3300021478\|Ga0210402_11851230	Not Available	529	Open in IMG/M
3300021560\|Ga0126371_10231748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1955	Open in IMG/M
3300025915\|Ga0207693_10112162	All Organisms → cellular organisms → Bacteria	2139	Open in IMG/M
3300025915\|Ga0207693_11341421	Not Available	533	Open in IMG/M
3300025928\|Ga0207700_10944834	Not Available	772	Open in IMG/M
3300025939\|Ga0207665_10187174	All Organisms → cellular organisms → Bacteria	1502	Open in IMG/M
3300026557\|Ga0179587_11034477	Not Available	541	Open in IMG/M
3300028047\|Ga0209526_10005715	All Organisms → cellular organisms → Bacteria	8491	Open in IMG/M
3300028885\|Ga0307304_10579211	Not Available	519	Open in IMG/M
3300031231\|Ga0170824_114027910	Not Available	606	Open in IMG/M
3300031474\|Ga0170818_101126477	Not Available	856	Open in IMG/M
3300031545\|Ga0318541_10822519	Not Available	518	Open in IMG/M
3300031573\|Ga0310915_10562545	Not Available	809	Open in IMG/M
3300031719\|Ga0306917_10307460	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1226	Open in IMG/M
3300031719\|Ga0306917_11525138	Not Available	514	Open in IMG/M
3300031736\|Ga0318501_10394841	Not Available	747	Open in IMG/M
3300031771\|Ga0318546_10510995	Not Available	843	Open in IMG/M
3300031879\|Ga0306919_10758009	Not Available	747	Open in IMG/M
3300031880\|Ga0318544_10335923	Not Available	587	Open in IMG/M
3300031890\|Ga0306925_10829815	Not Available	957	Open in IMG/M
3300031890\|Ga0306925_11278110	Not Available	731	Open in IMG/M
3300031890\|Ga0306925_11446282	Not Available	676	Open in IMG/M
3300031910\|Ga0306923_10610713	Not Available	1223	Open in IMG/M
3300031912\|Ga0306921_10816727	Not Available	1064	Open in IMG/M
3300031912\|Ga0306921_12096398	Not Available	599	Open in IMG/M
3300031941\|Ga0310912_10632566	Not Available	832	Open in IMG/M
3300031941\|Ga0310912_11397383	Not Available	529	Open in IMG/M
3300031942\|Ga0310916_10731828	Not Available	836	Open in IMG/M
3300031946\|Ga0310910_10168201	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1687	Open in IMG/M
3300031946\|Ga0310910_10591826	All Organisms → cellular organisms → Bacteria → Proteobacteria	880	Open in IMG/M
3300031947\|Ga0310909_10391105	All Organisms → cellular organisms → Bacteria	1168	Open in IMG/M
3300031947\|Ga0310909_11270059	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300031954\|Ga0306926_11023337	Not Available	982	Open in IMG/M
3300032001\|Ga0306922_10559534	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1215	Open in IMG/M
3300032076\|Ga0306924_11623149	Not Available	681	Open in IMG/M
3300032091\|Ga0318577_10366526	Not Available	689	Open in IMG/M
3300032261\|Ga0306920_100204252	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	2949	Open in IMG/M
3300032261\|Ga0306920_100479192	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1848	Open in IMG/M
3300032261\|Ga0306920_100999916	Not Available	1218	Open in IMG/M
3300032261\|Ga0306920_102119826	Not Available	784	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.80%
Host-Associated	Host-Associated	2.40%
Engineered	Engineered	0.80%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.60%
Aquatic	Environmental → Aquatic	7.20%
Plants	Host-Associated → Plants	2.40%
Modeled	Engineered → Modeled	0.80%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.60%
Sediment	Environmental → Aquatic → Sediment	5.60%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.40%
Freshwater	Environmental → Aquatic → Freshwater	1.60%
Simulated Communities (Sequence Read Mixture)	Engineered → Modeled → Simulated Communities (Sequence Read Mixture)	0.80%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	65.60%
Loam	Environmental → Terrestrial → Soil → Loam	24.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.60%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.40%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.60%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified	0.80%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	46.40%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	15.20%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.60%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.20%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.40%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.60%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified	0.80%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	24.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	20.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	9.60%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.20%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	5.60%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.20%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.40%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.60%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	1.60%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.60%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.80%
Simulated	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated	0.80%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2166559005	Simulated microbial communities from Lyon, France	Engineered	Open in IMG/M
2170459002	Grass soil microbial communities from Rothamsted Park, UK - March 2009 direct MP BIO 1O1 lysis 0-21 cm	Environmental	Open in IMG/M
2170459003	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005165	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006603	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
cont_0192.00000210	2166559005	Simulated	VVASVAAAVLIASYVELQTSPQVGTIVMLALFFTGLVVSWIATVFVMDGSLNNFFAEREQIEAERKGKEYMNRSDADRRPVIIRA
E1_06130790	2170459002	Grass Soil	MKGLLLYVGFVIAWTAAGVLIASYIDRVTSHQIGSIVLLAMFFSGLVVSWIATVFVMDGSLNNFFAEREQLEAERIGRQYMNRTNPKD
E4A_00116420	2170459003	Grass Soil	MKALILWVGFVIAWTAAAVLISSYLDRATSPQIGSIFLLAMFFSGLVVSWIATVFVMDGSLKNFTAAREQLEAERIGRDYMNRTNRG
INPhiseqgaiiFebDRAFT_1006802682	3300000364	Soil	AGLVIAWTALGVLISSFLSPQIGTILLLAMFFSGLVVSWIATVFVMDGSLNNFFAEREQLEAERXGKLYMNRTXXKD*
JGI1027J12803_1068618182	3300000955	Soil	MKGLLLYVGFVIAWTAAGVLIASYIDRVTSHQIGSIVLLAMFFSGLVVSWIATVFVMDGSLNNFFAEREQLEAERIGKLYMNRTNAKD*
JGI12630J15595_100305403	3300001545	Forest Soil	MTMKALIVFAGFVIASTAAAVLIGFFIEHQTSPQVDTIVMLALFFGGIVVSWIATVFLMDGSLNNFYAERDQIEAERQGR
JGI12630J15595_100911682	3300001545	Forest Soil	MKGLLLYVGFVIAWTAAGVLIASYIDRVTSHQIGSIVXLAMFFSGLVVSWIATVFVMDGSLNNFFAEREQLEAERVGKLYMNRTNPKD*
JGIcombinedJ26739_1000263928	3300002245	Forest Soil	MKALIVFAGFVIASTAAAVLIGFFIEHQTSPQADTIVILALFFGGIVASWIATVFVMDGSLNNFYAQRDQIEAERQGREYMERTSPRG*
JGIcombinedJ26739_1000293252	3300002245	Forest Soil	MKALIVFAGFVIASTAAAVLIGFFIENQTSPQVDTIVMLALFFGGIVVSWIATVFLMDGSLNNFYAERDQIEAERQGREYMERTSPRS*
JGIcombinedJ26739_1002511062	3300002245	Forest Soil	MTMKALIVFAGFVIASTAAAVLIGFFIEHQTSPQVDTIVMLALFFGGIVVSWIATVFLMDGSLNNFYAERDQIEAERQGREYMERTSPRG*
Ga0062386_1006974782	3300004152	Bog Forest Soil	MKALLLFAGFVMAWTAAGVLISSYVDRLASPGIGSIVLLAMFFSGLVVSWVATVFVMDGSLKNFHGEREQVEAERIGREYMNRSNLKGSALSA*
Ga0062386_1008795952	3300004152	Bog Forest Soil	MKALVLYAGLVIASTAAAVLIGSSIERQTSPQIGLVVILGLFFTSLVVSWIATVFIMDGSLKNFYAEKEQLEAERIGREYMSRSGNRGQTQDS*
Ga0066869_100715261	3300005165	Soil	MKGLLLYVGFVIAWTAAGVLIASYIDRVTSHQIGSIVLLAMFFSGLVVSWIATVFVMDGSLNNFFAEREQLEAERVGKLYMNRTNPKD*
Ga0066809_102311892	3300005168	Soil	IAWTALGVLISSFLSPQIGTILLLAMFFSGLVVSWIATVFVMDGSLKNFTAEREQLEAERIGKLYMNRTNQG*
Ga0066388_1001993102	3300005332	Tropical Forest Soil	MKALLLFAAFVVAITAAAVLIGSYIERQTSAQVGTVVMLAMFFGGIVVSWIGTVFVMDGSLKNFYAEKEQIEAEKKGRQYMAVNSRG*
Ga0066388_1008780291	3300005332	Tropical Forest Soil	MKALLLFAAFVIATTAAAVLIGSYIERQTSAQIGTVVMLVLFFGGVVVSWICTVFSMDGSLNNFCAEREQIEAEKKGRQYMAANTRG*
Ga0070714_1022000941	3300005435	Agricultural Soil	AASVLISSYVDRMASPAIGSVVLLAMFFSGLVVSWIATVFVMDGSLKNFHGEKEQIEAERIGRDYMNRSNLKGSALKA*
Ga0070713_1016280381	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MKALLLFVAFVMAWTAASVLISSYVDRMASPAIGSVVLLAMFFSGLVVSWIATVFVMDGSLKNFHGEKEQVEAERIGREYMNRSNLKGSALNA*
Ga0070699_1016151712	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MRALILWAGLVIAWTALGVLISSFLSPQIGTILLLAMFFSGLVVSWIATVFVMDGSLKNFTAEREQLEAERIGREYMARTNPQN*
Ga0070697_1012543401	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MKALILFAGFVIASTAAAVLIGFFIQHQTSPQVDTIVILALFFGGIVVSWIATVFVMDGSLNNFYAERDQIDAEKQGREYMERTNPRG*
Ga0066903_1000330126	3300005764	Tropical Forest Soil	MKGLILFAGFVIASTTAAVLIGTFIERQTSPQIGTIVMLALFFSGIVVSWIATVFVMDGSLNNFHAEREQIEAEKRGKEYMARTPQG*
Ga0066903_1004059651	3300005764	Tropical Forest Soil	MKALILFAGFVIASTAAAVLLGTFIERQTSPQVGTIVMLAMFFGGIVVSWVATVFVMDGSLNNFYAEREQIEAERQGREYMERSNLGG*
Ga0066903_1004832454	3300005764	Tropical Forest Soil	MKALILFAGFVVASTAAAVLIGSFIERQTSSQVGTIVMLAMFFGGIVVSWIATVFVMDGSLNNFFAEREQIEAE
Ga0066903_1008275002	3300005764	Tropical Forest Soil	MKGLLLYAGFVIVSTVAAAVIGSYIEAYASPEIGTVVMLALFFTGLIISWIATVFVMDGSLKNFNAEQEQIEAEKKGREYENRARAAPKD*
Ga0066903_1013685232	3300005764	Tropical Forest Soil	AMKGLILWAGFVIAWTALGVLMSSFIGRVTAPQIGTIFLLAMFFSGLVVSWIATVFVMDGSLKNFTAEREQIEAERIGREYVARTNPQSLTDAALEAEWKRMVLHG*
Ga0066903_1022404382	3300005764	Tropical Forest Soil	MKALLLFAAFVVATTAAAVLVGSYIERQTSAQVGTVVMLAMFFGGIVVSWIGTVFAMDGSLNNFYAEQEQIEAEKKGRQYMAANSRG*
Ga0066903_1047188611	3300005764	Tropical Forest Soil	LGDRIWRRAMKALLLFAAFVIATTAAAVLIGSYIERQTSAQIGTVVMLALFFGGIVVSWIGTVFAMDGSLNNFHAEREQIEAEKKGRQYMAANTRG*
Ga0066903_1048295191	3300005764	Tropical Forest Soil	MKALILFAGFVIASTTAAVLIGSFIERQTSPQIGTIVMLAMFFGGIVVSWIATVFVMDGSLNNFFAEREQIEAESQGREYAKRTSPGG*
Ga0066903_1054609693	3300005764	Tropical Forest Soil	MKALILFAGFVIASTVAAVLIGTFIERQTSPQVGTIVMLAMFFGGIVISWIATVFVIDGSLNNFYAEREQIEAERQGREYMERTS
Ga0066903_1079968272	3300005764	Tropical Forest Soil	MKALLLFAAFVVATTAAAVLIGSYIERQTSAQIGTVVMLALFFGGIVVSWIGTVFAMDGSLNNFHAEREQIEAEKKGRQ
Ga0075028_1007452841	3300006050	Watersheds	MKGLLLYVGFVIAWTAAGVLIASYIDRVTSHQIGSIVLLAMFFSGLVVSWIATVFVMDGSLNNFFAEREQLEAERVGKLYM
Ga0075026_1002154391	3300006057	Watersheds	MKGLILWVGFVIAWTAVGVLICSYLERATSPQIGSIFLLAMFFSGLVVSWIATVFVMDGSLKNFTAEREQLEAERRGRDYMNRTNQR*
Ga0070715_104541842	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MKGLLLYVGFVIAWTAAGVLIASYIDRVTSHQIGSIVLLAMFFSGLVVSWIATVFVMDGSLNNFFAERERLEAERVGRLYMNR
Ga0075018_100476971	3300006172	Watersheds	VIASTAAAVLIGFFIEHQTSPQIDTIVMLALFFGGIVASWIGTVFVMDGSLNNFYAERDQIEAERQGREYMERTSPRG*
Ga0075018_102563211	3300006172	Watersheds	MKALLLFVAFVIATTAAAVLIGSYIERQTSAQMGTVVMLVLFFGGVVVSWIGTVFAMDGSLNNFHAEREQIEAEKKGRQYMAANTRG*
Ga0075018_105039212	3300006172	Watersheds	IIGLSDKFGLTMKALILFAGFVIASTAAAVLIGTFIERQTSPQVGTIVMLTMFFGGIVVSWIATVFVMDGSLKNFYAEQDQIEAERKGREYMNRSAGLEG*
Ga0070712_1003347292	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MKGLLLYVGFVIAWTAAGVLIASYIDRVTSHQIGSIVLLAMFFSGLVVSWIATVFVMDGSLNNFFAERERLEAERVGRLYMNRTNPKD*
Ga0070712_1005263982	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MKALILWTGLVIAWTALGVLISSFLSPQIGSIFLLAMFFSGLVVSWIATVFVMDGSLKNFTAEREQLEAERKGKEYMARTNPQN*
Ga0075021_105575702	3300006354	Watersheds	LVLWVGFVIAWTAAAVLICSYLDRAASPEIGSIVLLAMFFSGLVVSWIATVFVMDGSLNNFFAEREQLEAERVGKLYMNRTNPKD*
Ga0075021_109986531	3300006354	Watersheds	LWVGFVIAWTAAGVLISSYIDRAISHQIGSIFLLAMFFSGLVVSWIATVFVMDGSLKNFTAEREQLEAERRGRDYMNRTNQR*
Ga0074064_116794462	3300006603	Soil	MKGLLLYVGFVIAWTAAGVLIASYIDRVTSHQIGSIVLLAMFFSGLVVSWIATVFVMDGSLNNFFAEREQLEAERVGKLYMNRTNP
Ga0074063_140148792	3300006953	Soil	MKALILWAGLVIAWTALGVLISSFLSPQIGTIFLLAMFFSGLVVSWIATVFVMDGSLKNFTAEREQIEAERKGREYMTRTNPKD*
Ga0126374_111769801	3300009792	Tropical Forest Soil	MKALLLFAAFVIATTAAAVLIGSYIERQTSAQIGTVVMLVLFFGGIVVSWICTVFAMDGSLNNFCAEREQIEAEKKGRQYMA
Ga0126380_102327911	3300010043	Tropical Forest Soil	MKALLLFAAFVIATTAAAVLIGSYIERQTSAQIGTVVMLVLFFGGIVVSWICTVFAMDGSLNNFCAEREQIEAEKKGRQYMAANTRG*
Ga0126370_103308362	3300010358	Tropical Forest Soil	MKALLLFAAFVIATTAAAVLIGSYIERQTSAQMGTVVMLALFFGGIVVSWIGTVFAMDGSLNNFHAEREQIEAEKKGRQYMAANTRG*
Ga0126370_109967091	3300010358	Tropical Forest Soil	MKALILFAGFVIASTAAAALLGTFIERETSPQVGTIVMLAMFFGGIVVSWIATVFVMDGSLNNFYAEREQIEAERQGREYMERSSPGG*
Ga0126376_109961662	3300010359	Tropical Forest Soil	MKALLLFAAFVIATTAAAVLIGSYIERQTSAQIGTVVMLALFFGGFVVSWIGTVFAMDGSLNNFHAEREQIEAEKKGRQYMAANTRG*
Ga0126381_1006567372	3300010376	Tropical Forest Soil	MKALLLFAAFVIATTAAAVLIGSYIERQTSAQIGTVVMLVLFFGGIVVSWIGTVFAMDGSLNNFHAEREQIEAEKKGRQYMAANTRG*
Ga0126381_1017261691	3300010376	Tropical Forest Soil	MKGLLLYAGFVIVSTVAAAVIGSYIEAHASPEIGTVVMLALFFTGLIISWIATVFVMDGSLKNFNAEQEQIEAEKKGREYENRARAAPKD*
Ga0150983_118495451	3300011120	Forest Soil	MKGLLLYVGFVVAWTAAGVLISSYIERVTSPQIGTIVLLAMFFSGLVVSWIATVFVMDGSLNNFFAEREQLEAERVGK
Ga0164300_107787811	3300012951	Soil	MKGLLLYVGFVIAWTAAGVLIASYIDRVTSHQIGSIVLLAMFFSGLVVSWIATVFVMDGSLNNFFSEREQLEAERVGKLYMNRTNPKD*
Ga0164301_101371953	3300012960	Soil	MKGLLLYVGFVIAWTAAGVLIASYIDRVTSHQIGSIVLLAMFFSGLVVSWIATVFVMDGSLNNFFAEREQLEA
Ga0164302_105390291	3300012961	Soil	GLLLYVGFVIAWTAAGVLIASYIDRVTSHQIGRIVLLAMFFSGLVVSWIATVFVMDGSLKNFTAEREQLEAERIGRDYMNRANQG*
Ga0126369_131182012	3300012971	Tropical Forest Soil	LFAGFVVASTAAAVLIGSFIERQTSSQVGTIVMLAMFFGGIVVSWIATVFVMDGSLNNFFAEREQIEAEKQGREYVNRNS*
Ga0164307_109614821	3300012987	Soil	MKGLLLYVGFVIAWTTAGVLIASYIDRVTSHQIGSIVLLAMFFSGLVVSWIATVFVMDGSLNNFFAEREQLEAERVGKLYMNRTNPKD*
Ga0164305_105905331	3300012989	Soil	MKALILFAGFVIASTAAAVLIGFFIEYQTSPEVDTIVMLALFFGGIVVSWIATVFLMDGSLNNFYAERDQIEAERQGREYMERTSPRG*
Ga0132258_122701012	3300015371	Arabidopsis Rhizosphere	MKALLLFAAFVVATAAAAVLIGSYVERQTSAQIGTVVMLVLFFGGIVVSWIGTVFAMDGSLNNFYAEREQIEAEKKGRQYMAANTRG*
Ga0132258_138576462	3300015371	Arabidopsis Rhizosphere	MKGLILWAGFVIAWTALGVLMSSFIGRVTAPQIGTIFLLAMFFSGLVVSWIATVFVMDGSLKNFTAEREQIEAERIGREYVARTNPQSLTDAALEAQTKRLVLGG*
Ga0132257_1018722871	3300015373	Arabidopsis Rhizosphere	MKALLLFAAFVIATASAAVLIGSYVERQTSAQIGTVVMLVLFFGGIVVSWIGTVFAMDGSLNNFYAEREQIEAEKKGRQYMAANTRG*
Ga0182036_103402343	3300016270	Soil	MKALLLFAAFVIATTAAAVLIGSDIERQTSAQIGTVVMLALFFGGIVVSWIGTVFAMDGSLNNFHAEREQIEAEKKGRQYMAANTRG
Ga0182036_109722712	3300016270	Soil	MKALIMYVGFVIAWTAAGIYIASIIERQTSPEIGTVVMLAMFFSGLVVSWIATVFVMDKSLDNFFAEQEQIEAERKGKEYMMRSDPNYRG
Ga0182041_112065752	3300016294	Soil	VKALILFAGFVVASTAAAVLIGSFIERQTSPQIGTIVMLAMFFGGIVVSWIATVFVMDGSLNNFFAEREQIEAERQGREYMKRTSPGA
Ga0182041_112244782	3300016294	Soil	FAGFVIASTAAAVLVGTFIERQTSPQGGTIVMLAMFFGGIVVSWIATVFVMDGSLNNFYAEREQIEAERQGREYMERTSPRG
Ga0182033_101274241	3300016319	Soil	MKALLLFGAFVIATTAAAVLIGSYIERQTSAQVGTVVMLALFFGGIVVSWIGTVFAMDGSLNNFHAEREQIEAEKKGRQYMAANTRG
Ga0182033_112930681	3300016319	Soil	MKALVLFAGFVIASTAAAVLVGTFIERQTSPQVGTIVMLAMFFGGIVVSWIATVFVMDGSLNNFYAEREQIEAERQGREYMERTGPRG
Ga0182033_120109441	3300016319	Soil	MKALIMYVGFVIAWTAAGIYIASIIERQTSPEIGTVVMLAMFFSGLVVSWIATVFVMDKSLDNFFAEQEQIEAERKGREYMNSSR
Ga0182032_115205801	3300016357	Soil	ILFAGFVIASTAAAVLFGTFIERQTSPQVGTIVMLTMFFGGIVVSWIATVFVIDGSLNNFYAERDQIEAERQGREYMERSNLGG
Ga0182034_117637761	3300016371	Soil	VKGLILFAGFVVASTAAAVLLGTFIERQTSPQVGTIVMLAMFFGGIVVSWIATVLVIDGSLNNFYAERDQIEAERQGREYMERSNLGG
Ga0182040_118856551	3300016387	Soil	MKALILFAGFVIASTAAAVLIGSFIERQTSSQVGTIVMLAMFFGGIVVSWIATVFVMDGSLNNFYAEREQIEAERQGREYMQRSSPAG
Ga0182037_101290123	3300016404	Soil	MKALLLFAAFVIATTAAAVLIGSYIERQTSAQIGTVVMLALFFGGIVVSWIGTVFAMDGSLNNFHAEREQIEAEKKGRRYMAANTRG
Ga0182037_107648762	3300016404	Soil	MKALVLFAGFVIASTAAAVLVGTFIERQTSPQVGTIVMLAMFFGGIVVSWIATVFVMDGSLNNFYAERDQIEAERQGREYMERTSPRG
Ga0182039_101845393	3300016422	Soil	MKALLLFAAFVVATTAAAVLIGSYIERQTSAQIGTVVMLVLFFGGIVVSWIGTVFAMDGSLNNFHAEREQIEAEKKGRQYMAANMRG
Ga0182039_118187421	3300016422	Soil	MKALVLFAGFVIASTAAAVLIGTFIERQTSPQVGTIVMLAMFFGGIVVSWIATVFVIDGSLSNFYAEREQIEAERQGREYMERTSPRG
Ga0182038_112176261	3300016445	Soil	MKALVLFAGFVIASTAAAVLIGTFIERQTSPQVGTIVMLAMFFGGIVISWIATVFVIDGSLNNFYAEREQIEAERQGREYMERTSPRG
Ga0210399_111635181	3300020581	Soil	MKVLILFAGFVIASTAAAVLIGTFIERQTSPQVGTIVMLALFFSGIVVSWIAKVFVMDGSLNNFYAEREQIEAEKRGKDYMARTDPQG
Ga0210399_113226741	3300020581	Soil	MKALILWVGFVIAWTAAGVLIASYIDRVTSHQIGSIVLLAMFFSGLVVSWIATVFVMDGSLKNFKGEQDQLEAERIGKEYMNRTNPQD
Ga0210406_101463402	3300021168	Soil	MKALLLFVAFVIATTAAAVLIGSYIERQTSAQMGTVVMLVLFFGGVVVSWIGTVFAMDGSLNNFHAEREQIEAEKKGRQYMAANTRG
Ga0210406_104742963	3300021168	Soil	MKGLLLYVGFVIAWTAAGVLIASYIDRVTSHQIGSIVLLAMFFSGLVVSWIATVFVMDGSLNNFFAERE
Ga0210406_113846152	3300021168	Soil	MKALILWVGFVIAWTAAGVLICSYLERATSPQIGSIFLLAMFFSGLVISWIATVFVMDGSLKNFTAEREQLEAERKGKEYMARTNPQN
Ga0210408_102797382	3300021178	Soil	MRALILWAGLVIAWTALGVLISSFLSPQIGTILLLAMFFSGLVVSWIATVFVMDGSLKNFTAEREQLEAERKGKEYMARTNPQN
Ga0210408_108894291	3300021178	Soil	MKALLLFAAFVIATTAAAVLIGSYIERQTSAQMGTVVMLVLFFGGIVVSWIGTVFAMDGSLNNFHAEREQIEAEKKGRQYMAANTRG
Ga0210408_109238382	3300021178	Soil	MKALIVFAGFVIASTAAAVLIGFFIEHQTSPQADTIVILALFFGGIVASWIATVFVMDGSLNNFYAQRDQIEAERQGREYMERTSPRG
Ga0210387_113133842	3300021405	Soil	MKGLLLYVGFVVAWTAAGVLISSYIERVTSPQIGTIVLLAMFFSGLVVSWIATVFVMDGSLNNFFAEREQLEAERVGKLYMNRTDLHD
Ga0210402_101721133	3300021478	Soil	MKALLLFAAFVIATTAAAVLIGSYIERQTSAQMGTVVMLVLFFGGVVVSWIGTVFAMDGSLNNFHAEREQIEAEKKGRQYMAANTRG
Ga0210402_116374891	3300021478	Soil	MKGLLLYVGFVIAWTAAGVLIASYIDRVTSHQIGSIVLLAMFFSGLVVSWIATVFVMDGSLNNFFAEREQLEAERVGKLYMNRTNPKD
Ga0210402_118512302	3300021478	Soil	MKALILWVGFVIAWTAAGVLIASYVERVTSPQISTIVLLGMFFSGLVVSWIATVFVMDGSLKNFTAEREQLEAERIGKEYMNRTNPQD
Ga0126371_102317484	3300021560	Tropical Forest Soil	MKALLLFAAFVVATTAAAVLIGSYIERQTSAQIGTVVMLVLFFGGVVVSWICTVFSMDGSLNNFCAEREQIEA
Ga0207693_101121622	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MKGLLLYVGFVIAWTAAGVLIASYIDRVTSHQIGSIVLLAMFFSGLVVSWIATVFVMDGSLNNFFAERERLEAERVGRLYMNRTNPKD
Ga0207693_113414212	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MKALILFAGFVIASTAAAVLIGFFIEHQTSPQVDTIVMLALFFGGIVASWIGTVFVMDGSLNNFYAERDQIEAERQGREYMERTSPRG
Ga0207700_109448341	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MKALLLFAAFVMAWTAAGVLISSYVDRMASSAIGSVVLLAMFFSGLVVSWIATVFVMDGSLKNFHGEKEQVEAERIGREYMNRSNLKGSALNA
Ga0207665_101871744	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MKDLLLYVGFVVAWTAAGVLIASYIDRVTSHQIGSIVLLAMFFSGLVVSWIATVFVMDGSLNNFFAEREQLEAERVGKLYMNRTNQG
Ga0179587_110344771	3300026557	Vadose Zone Soil	MKGLLLYVGFVIAWTAAGVLIASYIDRVTSHQIGSIVLLAMFFSGLVVSWIATVFVMDGSLNNFFAEREQLEAERVGKLYMNRTNPTD
Ga0209526_100057152	3300028047	Forest Soil	MKALIVFAGFVIASTAAAVLIGFFIEHQTSPQVDTIVMLALFFGGIVVSWIATVFLMDGSLNNFYAERDQIEAERQGREYMERTSPRG
Ga0307304_105792111	3300028885	Soil	RATETRRDAMKGLLLYVGFVIAWTAAGVLIASYIDRVTSHQIGSIVLLAMFFSGLVVSWIATVFVMDGSLNNFFAAREQLEAERVGKLYMNRTNPKD
Ga0170824_1140279101	3300031231	Forest Soil	RRDAMKGLLLYVGFVIAWTAAGVLIASYIDRVTSHQIGSIVLLAMFFSGLVVSWIATVFVMDGSLNNFFAEREQLEAERVGKLYMNRTNPKD
Ga0170818_1011264771	3300031474	Forest Soil	MKGLLLYVGFVIAWTAAGVLIASYIDRVTSHQIGSIVLLAMFFSGLVVSWIATVFVMDGSLKNFFAEREQLEAERIGRQYMNRTNPTD
Ga0318541_108225192	3300031545	Soil	MKALLLFAAFVVATTAAAVLIGSYIERQTSAQVGTVVMLALFFGGIVVSWIGTVFAMDGSLNNFHAEREQIEAEKKGRQYMAANTRG
Ga0310915_105625451	3300031573	Soil	MKALILFAGFVIASTAAAVLIGSFIERQTSSQVGTIVMLAMFFGGIVVSWIATVFVMDGSLNNFFAEREQIEAESQGREYAKRISPGG
Ga0306917_103074602	3300031719	Soil	MKALLLFAAFVVATTAAAVLIGSYIERQTSAQVGTVVMLALFFGGIVVSWIGTVFSMDGSLNNFHAEREQIEAEKKGRQYMAANTRG
Ga0306917_115251381	3300031719	Soil	PTLGLGDRIGDTMKALILFAGFVIASTTAAVLIGSFIERQTSPQIGTIVMLAMFFGGIVVSWIATVFVMDGSLNNFFAEREQIEAESQGREYAKRISPGG
Ga0318501_103948412	3300031736	Soil	MKALLLFAAFVIATTAAAVLIGSYIERQTSAQIGTVVMLALFFGGIVVSWIGTVFAMDGSLNNFHAEREQIEAEKKGRQYMAANTRG
Ga0318546_105109951	3300031771	Soil	MKALLLFAAFVVATTAAAVLIGSYIERQTSAQIGTVVMLALFFGGIVVSWIGTVFAMDGSLNNFHAEREQIEAEKKGRQYMAANTRG
Ga0306919_107580091	3300031879	Soil	MKALLLFAAFVIATTAAAVLIGSDIERQTSAQIGTVVMLVLFFGGIVVSWIGTVFSMDGSLNNFRAEREQIEAEKKGRQYMAANTRG
Ga0318544_103359232	3300031880	Soil	MKALLLFAAFVVATTAAAVLIGSYIERQTSAQIGTVVMLVLFFGGIVVSWIGTVFAMDGSLNNFHAEREQIEAEK
Ga0306925_108298151	3300031890	Soil	MKALILFAGFVIASTVAAVLIGTFIERQTSPQVGTIVMLAMFFGGIVISWIATVFVIDGSLNNFYAEREQIEAERQGREYMERTSPRG
Ga0306925_112781102	3300031890	Soil	MKALILFAGFVIASTTAAVLIGSFIERQTSPQIGTIVMLAMFFGGIVVSWIATVFVMDGSLNNFFAEREQIEAESQGREYAKRTSPGG
Ga0306925_114462821	3300031890	Soil	MKALVLFAGFVIASTAAAVLIGTFIERQTSPQVGTIVMLAMFFGGIVVSWIATVFVMDGSLNNFYAEREQIEAERQGREYMERTSPRG
Ga0306923_106107131	3300031910	Soil	FGSIMKALILFAGFVIASTVAAVLIGTFIERQTSPQVGTIVMLAMFFGGIVISWIATVFVIDGSLNNFYAEREQIEAERQGREYMERTSPRG
Ga0306921_108167272	3300031912	Soil	MKALLLFGAFVIATTAAAVLIGSYIERQTSAQIGTVVMLVLFFGGIVVSWIGTVFSMDGSLNNFHAEREQIEAEKKGRQYMAANTRG
Ga0306921_120963981	3300031912	Soil	MKALILFAGFVIASTVAAVLIGTFIERQTSPQVGTIVMLAMFFGGIVISWIATVFVIDGSLNNFYAEREQIEAERQGREYMERTSPR
Ga0310912_106325661	3300031941	Soil	MKALLLFAAFVIATTAAAVLIGSYIERQTSAQVGTVVMLALFFGGIVVSWIGTVFAMDGSLNNFHAEREQIEAEKKGRQYMAANTRG
Ga0310912_113973831	3300031941	Soil	RIGDTMKALILFAGFVIASTTAAVLIGSFIERQTSPQIGTIVMLAMFFGGIVVSWIATVFVMDGSLNNFFAEREQIEAESQGREYAKRISPGG
Ga0310916_107318281	3300031942	Soil	MKALILFAGFVIASTVAAVLIGTFIERQTSPQVGTIVMLAMFFGGIVISWIATVFVIDGSLNNFYAEREQIEAE
Ga0310910_101682011	3300031946	Soil	MKALLLFAAFVIATTAAAVLIGSYIERQTSAQIGTVVMLVLFFGGIVVSWIGTVFSMDGSLNNFHAEREQIEAEKKGRQYMAANTRG
Ga0310910_105918261	3300031946	Soil	IASTAAAVLLGSLVERQTSPQVGTILMLAMFFGGIVVSWIATVFVMDGSLNNFFAEREQIEAEKQGREYMNRNS
Ga0310909_103911052	3300031947	Soil	VKALILFAGFVIASTAAAVLIGSFIERQTSPQIGTIVMLAMFFGGIVVSWIATVFVMDGSLNNFYAEGDQIEAERQGREYMKRTGQGG
Ga0310909_112700591	3300031947	Soil	MKALILFAGFVIASTAAAVLLGTFIERQTSPQVGTIVMLAMFFGGIVISWIATVFVIDGSLNNFYAEREQIEAERQGREYMERTSPRG
Ga0306926_110233371	3300031954	Soil	VKGLILFAGFVVASTAAAVLIGSFIERQTSPQVGTVVMLAMFFGGIVVSWIATVFVMDGSLNNFYAEADQIEAERQGREYMKRTSPGA
Ga0306922_105595342	3300032001	Soil	STAAAVLIGSFIERQTSPQVGTVVMLAMFFGGIVVSWIATVFVMDGSLNNFYAEGDQIEAERQGREYMKRTGLGG
Ga0306924_116231492	3300032076	Soil	TTAAVLIGSFIERQTSPQIGTIVMLAMFFGGIVVSWIATVFVMDGSLNNFFAEREQIEAESQGREYAKRISPGG
Ga0318577_103665261	3300032091	Soil	MKALLLFAAFVVATTAAAVLIGSYIERQTSAQIGTVVMLVLFFGGIVVSWIGTVFAMDGSLNNFHAEREQIEAEKKGRQYMAANTRG
Ga0306920_1002042524	3300032261	Soil	MKALLLFAAFVIATTAAAVLIGSYIERQTSAQIGTVVMLALFFGGIVVSWIGTVFAMDGSLNNFHAEREQIEAE
Ga0306920_1004791922	3300032261	Soil	MKALILFAGFVIASTTAAVLIGSFIERQTSPQIGTIVMLAMFFGGIVVSWIATVFVMDGSLNNFFAEREQIEAESQGREYAKRISPGG
Ga0306920_1009999162	3300032261	Soil	ASTTAAVLIGSFIERQTSPQIGTIVMLAMFFGGIVVSWIATVFVMDGSLNNFFAEREQIEAETQGREYMKRTSPGA
Ga0306920_1021198262	3300032261	Soil	MKALILFAGFVIASTAAAVLFGTFIERQTSPQVGTIVMLAMFFGGIVVSWIATVFVIDGSLNNFYAERDQIEAERQGREYMERSNLGG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F068179

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences