Metagenome Family F068420

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F068420
Family Type	Metagenome
Number of Sequences	124
Average Sequence Length	53 residues
Representative Sequence	MPEIEIKFKATLKLDEKWAGRQTTEELIEYIKAKINSSLGFRGQVKKLTVVSK
Number of Associated Samples	63
Number of Associated Scaffolds	124

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	90.32 %
% of genes near scaffold ends (potentially truncated)	12.90 %
% of genes from short scaffolds (< 2000 bps)	75.00 %
Associated GOLD sequencing projects	53
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (87.097 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment (20.968 % of family members)
Environment Ontology (ENVO)	Unclassified (45.161 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (34.677 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 25.93% β-sheet: 0.00% Coil/Unstructured: 74.07%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.51
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.51
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 124 Family Scaffolds
PF12728	HTH_17	29.03
PF00486	Trans_reg_C	12.10
PF02518	HATPase_c	4.03
PF00483	NTP_transferase	3.23
PF08323	Glyco_transf_5	2.42
PF13432	TPR_16	1.61
PF00534	Glycos_transf_1	1.61
PF13938	DUF4213	1.61
PF08447	PAS_3	1.61
PF13411	MerR_1	1.61
PF02572	CobA_CobO_BtuR	0.81
PF00501	AMP-binding	0.81
PF13426	PAS_9	0.81
PF04430	DUF498	0.81
PF01761	DHQ_synthase	0.81
PF07992	Pyr_redox_2	0.81
PF05199	GMC_oxred_C	0.81
PF00266	Aminotran_5	0.81
PF00005	ABC_tran	0.81
PF09458	H_lectin	0.81
PF02416	TatA_B_E	0.81
PF13193	AMP-binding_C	0.81
PF01257	2Fe-2S_thioredx	0.81
PF02653	BPD_transp_2	0.81

COG ID	Name	Functional Category	% Frequency in 124 Family Scaffolds
COG0297	Glycogen synthase	Carbohydrate transport and metabolism [G]	2.42
COG0438	Glycosyltransferase involved in cell wall bisynthesis	Cell wall/membrane/envelope biogenesis [M]	2.42
COG1504	Uncharacterized conserved protein, DUF498 domain	Function unknown [S]	0.81
COG1826	Twin-arginine protein secretion pathway components TatA and TatB	Intracellular trafficking, secretion, and vesicular transport [U]	0.81
COG1905	NADH:ubiquinone oxidoreductase 24 kD subunit (chain E)	Energy production and conversion [C]	0.81
COG2109	ATP:corrinoid adenosyltransferase	Coenzyme transport and metabolism [H]	0.81
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	0.81
COG3737	Uncharacterized protein, contains Mth938-like domain	Function unknown [S]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	87.10 %
Unclassified	root	N/A	12.90 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	87.10 %
Unclassified	root	N/A	12.90 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	87.10 %
Unclassified	root	N/A	12.90 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	66.13 %
Unclassified	root	N/A	12.90 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.61 %
Spirochaetes	phylum	All Organisms → cellular organisms → Bacteria → Spirochaetes	0.81 %

Name	Rank	Taxonomy	Distribution
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	66.13 %
Unclassified	root	N/A	12.90 %
unclassified Spirochaetota	no rank	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota	0.81 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.81 %

Name	Rank	Taxonomy	Distribution
Dehalococcoidia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	39.52 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	13.71 %
Unclassified	root	N/A	12.90 %
Spirochaetes bacterium DG_61	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetes bacterium DG_61	0.81 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
unclassified Dehalococcoidia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia	27.42 %
Unclassified	root	N/A	12.90 %
Chloroflexi bacterium RBG_13_52_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_13_52_14	11.29 %
Dehalogenimonas	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalogenimonas	6.45 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.42 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	0.81 %
Spirochaetes bacterium DG_61	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetes bacterium DG_61	0.81 %

Name	Rank	Taxonomy	Distribution
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	27.42 %
Unclassified	root	N/A	12.90 %
Chloroflexi bacterium RBG_13_52_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_13_52_14	11.29 %
Dehalogenimonas lykanthroporepellens	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalogenimonas → Dehalogenimonas lykanthroporepellens	2.42 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.42 %
Desulfobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	0.81 %
Spirochaetes bacterium DG_61	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetes bacterium DG_61	0.81 %

Name	Rank	Taxonomy	Distribution
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	27.42 %
Unclassified	root	N/A	12.90 %
Chloroflexi bacterium RBG_13_52_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_13_52_14	11.29 %
Dehalogenimonas lykanthroporepellens	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalogenimonas → Dehalogenimonas lykanthroporepellens	2.42 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.42 %
Desulfatibacillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatibacillum	0.81 %
Spirochaetes bacterium DG_61	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetes bacterium DG_61	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001751\|JGI2172J19969_10142522	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	674	Open in IMG/M
3300002231\|KVRMV2_100072166	Not Available	2055	Open in IMG/M
3300002231\|KVRMV2_101392218	Not Available	893	Open in IMG/M
3300002231\|KVRMV2_101427045	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	843	Open in IMG/M
3300003852\|Ga0031655_10002509	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatibacillum	10552	Open in IMG/M
3300003852\|Ga0031655_10064915	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1547	Open in IMG/M
3300003852\|Ga0031655_10110766	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1097	Open in IMG/M
3300003852\|Ga0031655_10226769	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_13_52_14	706	Open in IMG/M
3300003861\|Ga0031654_10085642	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_13_52_14	880	Open in IMG/M
3300003885\|Ga0063294_10031614	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3562	Open in IMG/M
3300005254\|Ga0068714_10091699	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1522	Open in IMG/M
3300005254\|Ga0068714_10130312	All Organisms → cellular organisms → Bacteria	1171	Open in IMG/M
3300005613\|Ga0074649_1119594	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	912	Open in IMG/M
3300005613\|Ga0074649_1136219	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	817	Open in IMG/M
3300005821\|Ga0078746_1001111	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalogenimonas → Dehalogenimonas lykanthroporepellens	5477	Open in IMG/M
3300008416\|Ga0115362_100098987	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	573	Open in IMG/M
3300009034\|Ga0115863_1005143	All Organisms → cellular organisms → Bacteria	19896	Open in IMG/M
3300009034\|Ga0115863_1019450	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	9317	Open in IMG/M
3300009039\|Ga0105152_10034247	All Organisms → cellular organisms → Bacteria	2012	Open in IMG/M
3300009111\|Ga0115026_10711379	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	776	Open in IMG/M
3300009150\|Ga0114921_10044055	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	2759	Open in IMG/M
3300009150\|Ga0114921_10061911	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	2381	Open in IMG/M
3300009150\|Ga0114921_10109714	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1845	Open in IMG/M
3300009150\|Ga0114921_10118553	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1782	Open in IMG/M
3300009150\|Ga0114921_10953949	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	639	Open in IMG/M
3300009488\|Ga0114925_10301549	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetes bacterium DG_61	1088	Open in IMG/M
3300009488\|Ga0114925_11429893	Not Available	512	Open in IMG/M
3300009499\|Ga0114930_10012202	All Organisms → cellular organisms → Bacteria	6339	Open in IMG/M
3300009504\|Ga0114946_10222633	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1013	Open in IMG/M
3300009506\|Ga0118657_12065709	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	656	Open in IMG/M
3300009528\|Ga0114920_10086772	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1975	Open in IMG/M
3300009788\|Ga0114923_10357131	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1071	Open in IMG/M
3300010413\|Ga0136851_10000062	All Organisms → cellular organisms → Bacteria	98195	Open in IMG/M
3300010413\|Ga0136851_10217691	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1963	Open in IMG/M
3300012931\|Ga0153915_10432081	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	1496	Open in IMG/M
3300012931\|Ga0153915_10488322	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_13_52_14	1406	Open in IMG/M
3300012931\|Ga0153915_10581487	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalogenimonas → Dehalogenimonas lykanthroporepellens	1286	Open in IMG/M
3300012931\|Ga0153915_10966005	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_13_52_14	992	Open in IMG/M
3300012931\|Ga0153915_11143604	Not Available	909	Open in IMG/M
3300012931\|Ga0153915_11565157	All Organisms → cellular organisms → Bacteria	771	Open in IMG/M
3300012964\|Ga0153916_10233677	All Organisms → cellular organisms → Bacteria	1847	Open in IMG/M
3300012964\|Ga0153916_10598137	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_13_52_14	1179	Open in IMG/M
3300012964\|Ga0153916_10931123	Not Available	949	Open in IMG/M
3300014903\|Ga0164321_10009410	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2887	Open in IMG/M
3300014903\|Ga0164321_10420131	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	661	Open in IMG/M
3300017963\|Ga0180437_10190431	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalogenimonas → Dehalogenimonas lykanthroporepellens	1623	Open in IMG/M
3300017963\|Ga0180437_10342327	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1128	Open in IMG/M
3300017963\|Ga0180437_10452396	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	952	Open in IMG/M
3300017963\|Ga0180437_10495149	All Organisms → cellular organisms → Bacteria	902	Open in IMG/M
3300017987\|Ga0180431_10000662	All Organisms → cellular organisms → Bacteria	49270	Open in IMG/M
3300017987\|Ga0180431_10000691	All Organisms → cellular organisms → Bacteria	48377	Open in IMG/M
3300017987\|Ga0180431_10728275	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	669	Open in IMG/M
3300017987\|Ga0180431_10960832	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	564	Open in IMG/M
3300017989\|Ga0180432_10641316	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	753	Open in IMG/M
3300017991\|Ga0180434_10484107	Not Available	952	Open in IMG/M
3300017991\|Ga0180434_11170255	Not Available	576	Open in IMG/M
3300018064\|Ga0187773_10382061	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	810	Open in IMG/M
3300018064\|Ga0187773_11100157	Not Available	528	Open in IMG/M
3300018068\|Ga0184636_1069269	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_13_52_14	1178	Open in IMG/M
3300018070\|Ga0184631_10003249	All Organisms → cellular organisms → Bacteria	4532	Open in IMG/M
3300018080\|Ga0180433_10241523	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1449	Open in IMG/M
3300018080\|Ga0180433_11014641	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	605	Open in IMG/M
3300018088\|Ga0187771_10014006	All Organisms → cellular organisms → Bacteria	5867	Open in IMG/M
3300024263\|Ga0209978_10130140	Not Available	1289	Open in IMG/M
3300024263\|Ga0209978_10522299	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	563	Open in IMG/M
3300024265\|Ga0209976_10387607	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	741	Open in IMG/M
3300024353\|Ga0209979_1006829	All Organisms → cellular organisms → Bacteria	8496	Open in IMG/M
3300025135\|Ga0209498_1002179	All Organisms → cellular organisms → Bacteria	11930	Open in IMG/M
3300025135\|Ga0209498_1080501	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1373	Open in IMG/M
3300025843\|Ga0209182_10029295	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	1627	Open in IMG/M
3300027690\|Ga0209164_1095246	All Organisms → cellular organisms → Bacteria	1190	Open in IMG/M
3300027690\|Ga0209164_1130399	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	935	Open in IMG/M
3300027811\|Ga0256868_10467660	Not Available	501	Open in IMG/M
3300027877\|Ga0209293_10323988	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_13_52_14	786	Open in IMG/M
3300027888\|Ga0209635_10043833	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	3644	Open in IMG/M
3300027888\|Ga0209635_10753050	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	705	Open in IMG/M
3300027888\|Ga0209635_10887374	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	629	Open in IMG/M
3300027888\|Ga0209635_10986901	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	584	Open in IMG/M
3300027896\|Ga0209777_10002866	All Organisms → cellular organisms → Bacteria	22022	Open in IMG/M
3300027896\|Ga0209777_10041847	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	4222	Open in IMG/M
3300027896\|Ga0209777_10151530	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1911	Open in IMG/M
3300027896\|Ga0209777_10158231	All Organisms → cellular organisms → Bacteria	1860	Open in IMG/M
3300027896\|Ga0209777_10249783	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_13_52_14	1396	Open in IMG/M
3300027902\|Ga0209048_10014790	All Organisms → cellular organisms → Bacteria → Proteobacteria	6887	Open in IMG/M
3300027902\|Ga0209048_11026819	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_13_52_14	525	Open in IMG/M
3300031274\|Ga0307442_1166454	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	616	Open in IMG/M
3300031365\|Ga0307443_1122484	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	691	Open in IMG/M
3300031692\|Ga0315536_1049735	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1601	Open in IMG/M
3300031707\|Ga0315291_10120850	All Organisms → cellular organisms → Bacteria	2789	Open in IMG/M
3300031707\|Ga0315291_10316742	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1521	Open in IMG/M
3300031746\|Ga0315293_10184472	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	1724	Open in IMG/M
3300031746\|Ga0315293_10232589	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalogenimonas	1502	Open in IMG/M
3300031746\|Ga0315293_10334014	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1207	Open in IMG/M
3300031746\|Ga0315293_10489813	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_13_52_14	951	Open in IMG/M
3300031772\|Ga0315288_10102701	All Organisms → cellular organisms → Bacteria	3266	Open in IMG/M
3300031772\|Ga0315288_10206498	All Organisms → cellular organisms → Bacteria	2129	Open in IMG/M
3300031862\|Ga0315280_10000614	All Organisms → cellular organisms → Bacteria	66091	Open in IMG/M
3300031862\|Ga0315280_10435212	Not Available	591	Open in IMG/M
3300031885\|Ga0315285_10179752	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	1717	Open in IMG/M
3300031885\|Ga0315285_10270470	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1297	Open in IMG/M
3300031952\|Ga0315294_10671525	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	914	Open in IMG/M
3300032069\|Ga0315282_10035585	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	6048	Open in IMG/M
3300032118\|Ga0315277_10317535	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalogenimonas	1632	Open in IMG/M
3300032118\|Ga0315277_11094237	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	718	Open in IMG/M
3300032118\|Ga0315277_11119490	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_13_52_14	707	Open in IMG/M
3300032156\|Ga0315295_10263322	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1742	Open in IMG/M
3300032156\|Ga0315295_10397797	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalogenimonas	1401	Open in IMG/M
3300032156\|Ga0315295_10670923	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_13_52_14	1047	Open in IMG/M
3300032163\|Ga0315281_10024672	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalogenimonas	7776	Open in IMG/M
3300032163\|Ga0315281_10312816	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	1712	Open in IMG/M
3300032163\|Ga0315281_11620058	Not Available	630	Open in IMG/M
3300032164\|Ga0315283_11685750	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	642	Open in IMG/M
3300032177\|Ga0315276_10178074	All Organisms → cellular organisms → Bacteria	2222	Open in IMG/M
3300032342\|Ga0315286_10729470	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_13_52_14	1009	Open in IMG/M
3300033480\|Ga0316620_10777728	Not Available	917	Open in IMG/M
3300033480\|Ga0316620_11469019	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_13_52_14	673	Open in IMG/M
3300033486\|Ga0316624_10074464	All Organisms → cellular organisms → Bacteria	2289	Open in IMG/M
3300033486\|Ga0316624_10091464	Not Available	2114	Open in IMG/M
3300033486\|Ga0316624_10345113	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1225	Open in IMG/M
3300033486\|Ga0316624_11120072	Not Available	714	Open in IMG/M
3300033486\|Ga0316624_11669221	Not Available	588	Open in IMG/M
3300033493\|Ga0316631_10051600	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1331	Open in IMG/M
3300033513\|Ga0316628_100634183	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalogenimonas	1396	Open in IMG/M
3300033513\|Ga0316628_101183043	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1018	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.77%
Engineered	Engineered	3.23%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	85.48%
Terrestrial	Environmental → Terrestrial	11.29%
Lab Enrichment	Engineered → Lab Enrichment	3.23%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	43.55%
Marine	Environmental → Aquatic → Marine	25.81%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	12.10%
Soil	Environmental → Terrestrial → Soil	11.29%
Sediment	Environmental → Aquatic → Sediment	4.03%
Defined Media	Engineered → Lab Enrichment → Defined Media	3.23%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	22.58%
Oceanic	Environmental → Aquatic → Marine → Oceanic	15.32%
Hypersaline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline	10.48%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	10.48%
Lentic	Environmental → Aquatic → Freshwater → Lentic	9.68%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	7.26%
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents	4.84%
Sediment	Environmental → Aquatic → Freshwater → Sediment	4.03%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	4.03%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.03%
Anaerobic Media	Engineered → Lab Enrichment → Defined Media → Anaerobic Media	3.23%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	1.61%
Coastal	Environmental → Aquatic → Marine → Coastal	0.81%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.81%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	22.58%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	15.32%
Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment	10.48%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	10.48%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	9.68%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	7.26%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	4.03%
Sediment	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment	4.03%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.03%
Unclassified	Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified	3.23%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	2.42%
Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Sediment	1.61%
Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment	1.61%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	0.81%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.81%
Black Smokers	Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers	0.81%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	20.97%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	11.29%
Hypersaline Lake Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment	10.48%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	9.68%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	8.06%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	7.26%
Marine Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment	4.03%
Enrichment Culture	Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Enrichment Culture	3.23%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	2.42%
Marine Sediment	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment	2.42%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.42%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	1.61%
Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Lake Sediment	1.61%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	1.61%
Sediment, Intertidal	Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Sediment, Intertidal	1.61%
Marine Sediment	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment	1.61%
Saline Water And Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment	1.61%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.61%
Mangrove Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Mangrove Sediment	1.61%
Marine Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment	0.81%
Salt Marsh Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment	0.81%
Mangrove Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment → Mangrove Sediment	0.81%
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Hydrothermal Vents	0.81%
Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001751	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-30_32	Environmental	Open in IMG/M
3300002231	Marine sediment microbial communities from Santorini caldera mats, Greece - red mat	Environmental	Open in IMG/M
3300003852	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB	Environmental	Open in IMG/M
3300003861	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR	Environmental	Open in IMG/M
3300003885	Black smoker hydrothermal vent sediment microbial communities from the Guaymas Basin, Mid-Atlantic Ridge, South Atlantic Ocean - Sample 1	Environmental	Open in IMG/M
3300005254	Enrichment culture microbial communities from rom New York Harbor, USA that are MTBE-degrading - MTBE-NYH (New York Harbor Sulfidogenic) MetaG	Engineered	Open in IMG/M
3300005613	Saline sediment microbial communities from Etoliko Lagoon, Greece - sediment	Environmental	Open in IMG/M
3300005821	Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 25 cmbsf, PM1	Environmental	Open in IMG/M
3300008416	Sea floor sediment microbial communities from Gulf of Mexico Methane Seep - MPC12B	Environmental	Open in IMG/M
3300009034	Intertidal mud flat sediment archaeal communities from Garolim Bay, Chungcheongnam-do, Korea	Environmental	Open in IMG/M
3300009039	Lake sediment microbial communities from Lake Baikal, Russia to study Microbial Dark Matter (Phase II) - Lake Baikal sediment 0-5 cm	Environmental	Open in IMG/M
3300009111	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1	Environmental	Open in IMG/M
3300009150	Deep subsurface microbial communities from South Atlantic Ocean to uncover new lineages of life (NeLLi) - Benguela_00093 metaG	Environmental	Open in IMG/M
3300009488	Deep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00607 metaG	Environmental	Open in IMG/M
3300009499	Deep subsurface microbial communities from Anholt, Denmark to uncover new lineages of life (NeLLi) - Anholt_01485 metaG	Environmental	Open in IMG/M
3300009504	Lake sediment microbial communities from Walker lake, Nevada to study Microbial Dark Matter (Phase II) - Walker Lake 11/02/13 Deep Sediment	Environmental	Open in IMG/M
3300009506	Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_8	Environmental	Open in IMG/M
3300009528	Deep subsurface microbial communities from South Pacific Ocean to uncover new lineages of life (NeLLi) - Chile_00310 metaG	Environmental	Open in IMG/M
3300009788	Deep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00157 metaG	Environmental	Open in IMG/M
3300010413	Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_9	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012964	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaG	Environmental	Open in IMG/M
3300014903	Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay12, Core 4567-28, 21-24 cm	Environmental	Open in IMG/M
3300017963	Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaG	Environmental	Open in IMG/M
3300017987	Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_MS_1 metaG	Environmental	Open in IMG/M
3300017989	Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_MS_2 metaG	Environmental	Open in IMG/M
3300017991	Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_2 metaG	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300018068	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_b2	Environmental	Open in IMG/M
3300018070	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_b1	Environmental	Open in IMG/M
3300018080	Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_1 metaG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300024263	Deep subsurface microbial communities from South Atlantic Ocean to uncover new lineages of life (NeLLi) - Benguela_00093 metaG (SPAdes)	Environmental	Open in IMG/M
3300024265	Deep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00157 metaG (SPAdes)	Environmental	Open in IMG/M
3300024353	Deep subsurface microbial communities from Anholt, Denmark to uncover new lineages of life (NeLLi) - Anholt_01485 metaG (SPAdes)	Environmental	Open in IMG/M
3300025135	Lake sediment microbial communities from Walker lake, Nevada to study Microbial Dark Matter (Phase II) - Walker Lake 11/02/13 Deep Sediment (SPAdes)	Environmental	Open in IMG/M
3300025843	Lake sediment microbial communities from Lake Baikal, Russia to study Microbial Dark Matter (Phase II) - Lake Baikal sediment 0-5 cm (SPAdes)	Environmental	Open in IMG/M
3300027690	Enrichment culture microbial communities from rom New York Harbor, USA that are MTBE-degrading - MTBE-NYH (New York Harbor Sulfidogenic) MetaG (SPAdes)	Engineered	Open in IMG/M
3300027811	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT92D227 HiSeq	Environmental	Open in IMG/M
3300027877	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027888	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-30_32 (SPAdes)	Environmental	Open in IMG/M
3300027896	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)	Environmental	Open in IMG/M
3300027902	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR (SPAdes)	Environmental	Open in IMG/M
3300031274	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1604-30	Environmental	Open in IMG/M
3300031365	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - SW1601-220	Environmental	Open in IMG/M
3300031692	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1602-30	Environmental	Open in IMG/M
3300031707	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20	Environmental	Open in IMG/M
3300031746	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20	Environmental	Open in IMG/M
3300031772	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20	Environmental	Open in IMG/M
3300031862	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_40	Environmental	Open in IMG/M
3300031885	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_36	Environmental	Open in IMG/M
3300031952	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40	Environmental	Open in IMG/M
3300032069	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_20	Environmental	Open in IMG/M
3300032118	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_15	Environmental	Open in IMG/M
3300032156	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_0	Environmental	Open in IMG/M
3300032163	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0	Environmental	Open in IMG/M
3300032164	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0	Environmental	Open in IMG/M
3300032177	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0	Environmental	Open in IMG/M
3300032342	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G10_0	Environmental	Open in IMG/M
3300033480	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D5_B	Environmental	Open in IMG/M
3300033486	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_A	Environmental	Open in IMG/M
3300033493	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D3_A	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI2172J19969_101425222	3300001751	Marine Sediment	MPEIEIKFKGTLQLDEKWASNHTTEELIEYIKARLNSSLGFRGQIKKFSLITR*
KVRMV2_1000721662	3300002231	Marine Sediment	MPNVELRFKVTLELNEKWASNQTSEELVDYLKARLNSSLGFRGQIKKLNLVAR*
KVRMV2_1013922182	3300002231	Marine Sediment	LPVAEIEIKIKATLQLDEKWADNQTTEELVEYLKARLNSSLGFRGQIKKLTLVNK*
KVRMV2_1014270452	3300002231	Marine Sediment	VRNIEIQLEVMLELDEMWASNQTADELIDYIRDRMDSSLGFRGQIRSLNVVS*
Ga0031655_1000250910	3300003852	Freshwater Lake Sediment	MPEIEIKFKATLKLDEKWAGRQTTEELIECIKAKINSSLGFRGQVKKLTVVSK*
Ga0031655_100649151	3300003852	Freshwater Lake Sediment	FKATLKLDEKWASTQTTEELIEYIKYRINGSLGFRGQVKKLAIVRR*
Ga0031655_101107661	3300003852	Freshwater Lake Sediment	VPEIEIKFKATLKLDEKWASTQTTEELIEYIKYRINSSLGFRGQVKKLAIVSR*
Ga0031655_102267691	3300003852	Freshwater Lake Sediment	MTEIEIKFKATLKLDEKWADKQTTEELIEYIKAKINSSLGFRGQVKKLTVVSK*
Ga0031654_100856423	3300003861	Freshwater Lake Sediment	MPEIEIKFKATLKLDEKWVDKQTTEQLMECIKAKINNSLGFRGQVKKLTVVSK*
Ga0063294_100316143	3300003885	Hydrothermal Vents	MRNIELKFRVTLELDEKWARNHTSEELVDYIKTRLNSSLGFRGQIKKLSLVTR*
Ga0068714_100916993	3300005254	Enrichment Culture	MQDITIKFKVTLQLDEKWAGNQTSEEIIEYIKARINSSLGFRGKIKKLTVVAK*
Ga0068714_101303122	3300005254	Enrichment Culture	MANVELKFRVTLELNDKWAKGQTDEEIVDYLKARLNSSLGFRGQIKKLNIAAK*
Ga0074649_11195941	3300005613	Saline Water And Sediment	MQDVEIRLRVTLTLDEKWARNHTQEELADYIKERMNSSLGFRGQIKKFAIAKKRNQA*
Ga0074649_11362192	3300005613	Saline Water And Sediment	MHNIELKFKVTLELDGKWASNQTTEELVEYIKTRMNSSLGFRGQIKKVALVNR*
Ga0078746_10011112	3300005821	Marine Sediment	MHNIELKFKVTLDLDGKWASNQTTEELVEYIKTRMNSSLGFRGQIKKVTLVNR*
Ga0115362_1000989872	3300008416	Sediment	MRNIELKFKVTLELNEKWAGDQTTEELVDYIKARLNSSLGFRGQIKKLNLVTR*
Ga0115863_10051436	3300009034	Sediment, Intertidal	MQNIEIKFKATLLLDEKWASNHTTEELIEYIKERINSSLGFRGQIKRLSLVTR*
Ga0115863_10194502	3300009034	Sediment, Intertidal	MPEIEIKFKATLQLDEKWASNQTTEELIEYIKARINSSLGFRGQIKKLSLVTR*
Ga0105152_100342473	3300009039	Lake Sediment	MPEIEIKFKATLKLDEKWAGRQTTEELIEYIKAKINSSLGFRGQVKKLSLVTK*
Ga0115026_107113791	3300009111	Wetland	MPEIEIKFKATLKLDEKWVDKQTTEELIEYIKAKINSSLGFRGQVKKLNVVSK*
Ga0114921_100440552	3300009150	Deep Subsurface	MQYIEIKFKATLQLDEKWASNQTTEELIEYIKARINSSLGFRGQIKKLSLVTR*
Ga0114921_100619112	3300009150	Deep Subsurface	MQNIEIKFKATLLLDEKWASNHTTEELIEYIKDRINSSLGFRGQIKRLSLVTR*
Ga0114921_101097143	3300009150	Deep Subsurface	MQYIEIKFKATLQLDEKWASNHTTEELIEYIKERINSSLGFRGQIKRLSVVPK*
Ga0114921_101185533	3300009150	Deep Subsurface	MQYIEIKFKATLQLDEKWASNHTTEELIEYIKERINSSLGFRGQIKSLSVVSR*
Ga0114921_109539492	3300009150	Deep Subsurface	ELDGRWATNQTTEELVEYIKTRMNSSLGFRGAVKKFRVVSDRKKQA*
Ga0114925_103015492	3300009488	Deep Subsurface	MPEIEFKFKGTLQLDEKWASNQTPEELIEYIKARINSSLGFRGQIKKLSLVTGNSKQKAGT*
Ga0114925_114298932	3300009488	Deep Subsurface	MKGTEIKFKVTINLEEKWAKNLSQEELLEYIKARLNSSLGFRGQIKKLTVLNR*
Ga0114930_100122023	3300009499	Deep Subsurface	MQYIEIKFKATLHLDEKWASNHTTEELIEYIKERINSSLGFRGQIKRLSLVSR*
Ga0114946_102226331	3300009504	Sediment	MHNIELKFKVTLDLDGKWASNQTTEELVEYIKTRINSSLGFRGQIKKVTLVTR*
Ga0118657_120657091	3300009506	Mangrove Sediment	MPNIEIRFKVTLELNEKWARNQTTEELVDYLKARLNSSLGFRGQIKKLNLVAR*
Ga0114920_100867721	3300009528	Deep Subsurface	MQYIEIKFKATLQLDEKWASNHTTEELIEYIKERINSSLGFRGQIKRLSVVPR*
Ga0114923_103571311	3300009788	Deep Subsurface	MHDIEVTFEVTLELDEEWASNQTADELIEYIKDRMHHSLGFRGQIKRLRAVGPKRTST*
Ga0136851_1000006255	3300010413	Mangrove Sediment	MAEIEVKVKATLQLDEKWASNQTTEELVEYLKTRLNSSLGFRGQIKKLKLVSK*
Ga0136851_102176913	3300010413	Mangrove Sediment	MAGIEIRIKATLHLDERWASNQTTEELVEYLRARLNSSLGFRGQIKKLKLVSK*
Ga0153915_104320813	3300012931	Freshwater Wetlands	MREIEIEFKATLKLDEKWVGKQTTEQLMEYIKAIINSSLRFRGRVKKLTVVSK*
Ga0153915_104883222	3300012931	Freshwater Wetlands	MPEIEIKFKVTLKLDEKWAGGLTTEELIEYIKDRINSSMGDKGQVKKLSLVTK*
Ga0153915_105814871	3300012931	Freshwater Wetlands	MNLMPEIEIKFKATLRLDEKWVGKQTTEQLIEYIKARINRSLGCRGQVEKLTVIS
Ga0153915_109660052	3300012931	Freshwater Wetlands	MPEIEIKFKATLKLDEKWAGGLTTEELIEYIKDRINSSLGVRGQVKKLSLVTK*
Ga0153915_111436042	3300012931	Freshwater Wetlands	LYTADKDLMREIEIEFKATLKLDEKWVGKQTTEQLMEYIKTIINSSLGFRGRVKKLTVVSK*
Ga0153915_115651572	3300012931	Freshwater Wetlands	MSEIEIKFKATLKLDEQWVDKQTTEELIEYIKARINSSLGFRGQVKKLTVVSK*
Ga0153916_102336772	3300012964	Freshwater Wetlands	MPEIEIKFKATLKLDEKWVGKQTTEQLMEYIKAKINSSLGFRGQVKKLTVVSK*
Ga0153916_105981372	3300012964	Freshwater Wetlands	MPEIEIKFKATLKLDEKWAGGLTTEELIEYIKERINGSLGDRGQVKKLSLVTK*
Ga0153916_109311231	3300012964	Freshwater Wetlands	MPEIEIKFKATLKLDEKWVGGLTTEELIEYIKDRINSSLGVRGQVKKLSLVTK*
Ga0164321_100094101	3300014903	Marine Sediment	MSEDHMHNIELKFKVTLDLDGKWASNQTTEELVEYIKTRMNSSLGFRGQIKKVTLVTR*
Ga0164321_104201311	3300014903	Marine Sediment	MPNIELKFKITLELNEKWAGTQTSEELVEYVKARLNSSLGFRGQIKKLTVVNR*
Ga0180437_101904311	3300017963	Hypersaline Lake Sediment	MPNIEIRFKVTLELNEKWARNQTTEELVDYLKARLNSSLGFRGQIKKLNLVAR
Ga0180437_103423273	3300017963	Hypersaline Lake Sediment	MPNIELKFKVTLELNEKWASNQTTEELVDYIKARLNSSLGFRGQIKKVNVVTR
Ga0180437_104523962	3300017963	Hypersaline Lake Sediment	MPNIEITFEVTLALDERWASHQTADELIDYIRERLHSSLGFRGQIKKLRVVGQKRKG
Ga0180437_104951492	3300017963	Hypersaline Lake Sediment	MEKIEIRVKAVLELDEKWANNQTTEELVEYLRARVNNSLGFRGQIKKLKLVNR
Ga0180431_1000066239	3300017987	Hypersaline Lake Sediment	MPNIEITFEVTLALDERWASHQTADELIDYIRERLHSSLGFRGQIKKLRVVGQKRKGK
Ga0180431_1000069133	3300017987	Hypersaline Lake Sediment	MHNIELKFKVTLELDGKWASNQTTEELVEYIKTRMNSSLGFRGQIKKVALVNR
Ga0180431_107282752	3300017987	Hypersaline Lake Sediment	MQDVEIKLRVTLALDEKWAGNHTQEELADYIKERMNSSLGFRVQIKKFAIAKKRNSA
Ga0180431_109608321	3300017987	Hypersaline Lake Sediment	MQDVEIKLRVTLTLDEKWARNHTQEELADYIKERMNSSLGFRGQIKKFAIAKRRNQA
Ga0180432_106413161	3300017989	Hypersaline Lake Sediment	MQDVEIKLRVTLTLDEKWARNHTQEELADYIKERMNSSLGFRGQIKKFAIAKKRNQA
Ga0180434_104841071	3300017991	Hypersaline Lake Sediment	MPKSEITFKVTLKLDEKWASNRSQDEIIESIKDRFNTSLGFRGGIKRFSVIGKNS
Ga0180434_111702551	3300017991	Hypersaline Lake Sediment	MKPLEIKLSVTVQLDEKWASNLTTEELVECLKAQIEKGLGFRGQITKLKLVNK
Ga0187773_103820612	3300018064	Tropical Peatland	MQEIEIKFKATLKLDEKWAGKQTTEQLIEFIKARIDSELGLRGRVKKLTIVSK
Ga0187773_111001571	3300018064	Tropical Peatland	MMDRNLMPEIEIKVKVTLKLDEKWADGLTTEELIEYIKARINSSLGVRGQVKNLSLVTK
Ga0184636_10692692	3300018068	Groundwater Sediment	MPEIEIKFKATLKLDEKWVDKQTTEELIEYIKAKINSSLGFRGQVKKLTVVSK
Ga0184631_100032496	3300018070	Groundwater Sediment	MPEIEIKFKATLKLDEKWADRQTTEELIEYIKAKINSSLGFRGQVKKLTVVSK
Ga0180433_102415232	3300018080	Hypersaline Lake Sediment	MQDVEIKLRVTLALDEKWAGNHTQEELADYIKERMNSSLGFRGQIKKFAIAKKRNSA
Ga0180433_110146412	3300018080	Hypersaline Lake Sediment	MKPLEIKLNVTVQLDEKWASNLTTEELVECLKAQIEKGLGFRGQITKLKLVNS
Ga0187771_100140063	3300018088	Tropical Peatland	MREIEIEFKATLKLDEKWVGKQTTEQLMEYIKARINRSLGFKGRVKKLTVVSK
Ga0209978_101301402	3300024263	Deep Subsurface	MQYIEIKFKATLQLDEKWASNQTTEELIEYIKARINSSLGFRGQIKKLSLVTR
Ga0209978_105222992	3300024263	Deep Subsurface	ATLQLDEKWASNHTTEELIEYIKERINSSLGFRGQIKSLSVVSR
Ga0209976_103876071	3300024265	Deep Subsurface	MHDIEVTFEVTLELDEEWASNQTADELIEYIKDRMHHSLGFRGQIKRLRAVGPKRTST
Ga0209979_10068295	3300024353	Deep Subsurface	MQYIEIKFKATLHLDEKWASNHTTEELIEYIKERINSSLGFRGQIKRLSLVSR
Ga0209498_10021791	3300025135	Sediment	MHNIELKFKVTLDLDGKWASNQTTEELVEYIKTRMNSSLGFRGQIKKVTLVNR
Ga0209498_10805011	3300025135	Sediment	MHNIELKFKVTLDLDGKWASNQTTEELVEYIKTRINSSLGFRGQIKKVTLVTR
Ga0209182_100292953	3300025843	Lake Sediment	MPEIEIKFKATLKLDEKWAGRQTTEELIEYIKAKINSSLGFRGQVKKLSLVTK
Ga0209164_10952462	3300027690	Enrichment Culture	MANVELKFRVTLELNDKWAKGQTDEEIVDYLKARLNSSLGFRGQIKKLNIAAK
Ga0209164_11303992	3300027690	Enrichment Culture	MQDITIKFKVTLQLDEKWAGNQTSEEIIEYIKARINSSLGFRGKIKKLTVVAK
Ga0256868_104676601	3300027811	Soil	PEIEIKFKATLKLDEKWADRQTTEELIEYIKAKINSSLGFRGQVKKLTVVSK
Ga0209293_103239881	3300027877	Wetland	MPEIEIKFKATLKLDEKWVDRQTAEELIEYIKARINSSLGFRGQVKKLSLVPHDPSMYLE
Ga0209635_100438332	3300027888	Marine Sediment	MPEIEIKFKGTLQLDEKWASNHTTEELIEYIKARLNSSLGFRGQIKKFSLITR
Ga0209635_107530502	3300027888	Marine Sediment	MQYIEMKFKATLQLDEKWASNYATDELIEYIKERINSSLGFRGQIKRLTLVSR
Ga0209635_108873741	3300027888	Marine Sediment	MRNIELKFRVTLELDEKWARNQTTEELVEYIKTRMNSSLGFRGQIKKVTLIAK
Ga0209635_109869011	3300027888	Marine Sediment	MRNVEIKFKVTLQLDEKWASNQTIDELIEYIKDRMNSSLGFRGQIKKLSVVTR
Ga0209777_1000286610	3300027896	Freshwater Lake Sediment	MPEIEIKFKATLKLDEKWAGRQTTEELIECIKAKINSSLGFRGQVKKLTVVSK
Ga0209777_100418471	3300027896	Freshwater Lake Sediment	VPEIEIKFKATLKLDEKWASTQTTEELIEYIKYRINSSLGFRGQVKKLAIVSR
Ga0209777_101515303	3300027896	Freshwater Lake Sediment	VPGIEIKFKATLKLDEKWASTQTTEELIEYIKYRINGSLGFRGQVKKLAIVRR
Ga0209777_101582312	3300027896	Freshwater Lake Sediment	MTEIEIKFKATLKLDEKWADKQTTEELIEYIKAKINSSLGFRGQVKKLTVVSK
Ga0209777_102497833	3300027896	Freshwater Lake Sediment	VPEIEIKFKATLKLDEKWASTQTTEELIEYIKYRINGSLGFRGQVKKLAIVRR
Ga0209048_100147902	3300027902	Freshwater Lake Sediment	MPEIEIKFKATLKLDEKWVDKQTTEQLMECIKAKINSSLGFRGQVKKLTVVSK
Ga0209048_110268191	3300027902	Freshwater Lake Sediment	VPGIEIKFKATLKLDEKWASTQTTEELIEYIKYRINGSLGFRGQVKKLAIVSR
Ga0307442_11664542	3300031274	Salt Marsh	MKPLEIKLSVTVQLDEKWASNLTTEELVECLKAQIEKGLGFRGQITKLKLVNR
Ga0307443_11224841	3300031365	Salt Marsh	MQYIEMKFKATLQLDEKWASNHTTEDLIEYIKERINSSLGFRGQIKRLSVVTK
Ga0315536_10497352	3300031692	Salt Marsh Sediment	MPNIELRFKVTLELNEKWARNQTTEELVDYLKARLNSSLGFRGQIKKLNLVAR
Ga0315291_101208502	3300031707	Sediment	VSEIEIKFKATLKLDEKWASTQTTEELIEYIKYRINSSLGFRGQVKKLAIVSR
Ga0315291_103167423	3300031707	Sediment	MEHNIQLTFRVTVELDEKWASNQTTDEVIEYIKQRMNSSLGFRGQIRKFSVVRR
Ga0315293_101844723	3300031746	Sediment	MPEIEIKFKATLKLDEKWADKQTTEQLMEYIKAKINSSLGFRGQVKKLTVVSK
Ga0315293_102325891	3300031746	Sediment	MPEIEIKFKATLKLDEKWADGQTTEELIEYIKVKINSSLGFRGQVK
Ga0315293_103340142	3300031746	Sediment	EIKFKATLKLDEKWADKQTTEQLMEYIKAKINSSLGFRGQVKKLTVVSK
Ga0315293_104898132	3300031746	Sediment	MQEIEIKFKATLKLDEKWADGQTTEELIEYIKVKINSSLGFRGQVKKLSLVTK
Ga0315288_101027012	3300031772	Sediment	MPEIEIKFKATLKLDEKWASTQTTEELIEYIKYRINGSLGFRGQVKKLAIVSK
Ga0315288_102064983	3300031772	Sediment	MPEIEIKFKATLKLDEKWADKQTTEQLMEYIKAKINSSLGFRGQVKNLTVVSK
Ga0315280_1000061465	3300031862	Sediment	MPEIEIKFKATLKLDEKWVGKQTTEQLIEYIKARINSSLGFRGQVKKLAIVSK
Ga0315280_104352122	3300031862	Sediment	EIKFKATLKLDEKWASTQTTEELIEYIKYRINGSLGFRGRVKKLAIVSK
Ga0315285_101797523	3300031885	Sediment	MPEIEIKFKATLKLDEKWAGRQTTEELIEYIKAKINSSLGF
Ga0315285_102704702	3300031885	Sediment	MPEIEIKFKATLKLDEKWVDKQTAEELIECIKAKINSSLGFRGQVKKLTVVSK
Ga0315294_106715251	3300031952	Sediment	KATLKLDEKWADRQTTEELIEYIKAKINSSLGFRGQVKKLTVVSK
Ga0315282_100355856	3300032069	Sediment	MPEIEIKFKATLKLDEKWASTQTTEELIEYIKYRINGSLGFRGRVKKLAIVSK
Ga0315277_103175351	3300032118	Sediment	VSEIEIKFKATLKLDEKWANTQTTEELIEYIKYRINSSLGFRGQVKKLAIVSR
Ga0315277_110942371	3300032118	Sediment	MAETHDIQLTFKVTVEIDEKWASNQTTDDLVDYIKQRMNSSLGFRGQIKKFRVVRR
Ga0315277_111194902	3300032118	Sediment	MPEIEIKFKATLKPDEKWAGRQTTEELIEYIKAKINSSLGFRGQVKKLSLVTK
Ga0315295_102633223	3300032156	Sediment	MPEIEIKFKATLKLDEKWADGQTTEELIEYIKVKINSSLGFRGQVKKLSLVTK
Ga0315295_103977971	3300032156	Sediment	MPEIEIKFKATLKLDEKWADKQTTEQLMEYIKAKINSSLGFRGKVKKLTVVSK
Ga0315295_106709231	3300032156	Sediment	MPEIEIKFKATLKLDEKWVDKQTTEQLIEYIKAKINSSLGCRGQVKKLTVVSK
Ga0315281_100246724	3300032163	Sediment	MPEIEIKFKATLKLDEKWVGKQTTEQLMECIKAKINSSLGFRGQVKKLTVVSK
Ga0315281_103128163	3300032163	Sediment	MPEIEIKFKATLKLDEKWADKQTTEQLMEYIKAKINSSLGFRGQVKN
Ga0315281_116200582	3300032163	Sediment	MPEIEIKFKATLKLDEKWVDKQTTEQLMEYIKAKINSSLGFRGQVKKLTVVSK
Ga0315283_116857502	3300032164	Sediment	MPEIEIKFKATLKLDEKWAGRQTTEELIEYIKAKINSSLGFRGQVKKLTVVSK
Ga0315276_101780742	3300032177	Sediment	MPEIEIKFKATLKLDEKWADKQTTEQLMEYIKAKINSSLGFRGRVKKLTVVSK
Ga0315286_107294702	3300032342	Sediment	MPEIEIKFKATLKLDEKWADRQTTEQLIEYIKVKINSSLGFRGQVKKLSLVTK
Ga0316620_107777282	3300033480	Soil	MEHNIQLTFRVTVELDEKWASNQTTDEVIDYIKQRMNSSLGFRGQIRKFSVVRR
Ga0316620_114690192	3300033480	Soil	MREIEIEFKATLKLDEKWVGKQTTEQLMEYIKAIINSSLRFRGRVKKLTVVSK
Ga0316624_100744643	3300033486	Soil	MPGIEIKFKATLKLDEKWVDKQTTEQLMECIKAKINSSLGFRGQVKKLTVVSK
Ga0316624_100914641	3300033486	Soil	MPEIEIKFKATLRLDEKWVGKQTTEQLIEYIKARINSSLGFRGQVKKLTVISK
Ga0316624_103451133	3300033486	Soil	MREIEIEFKATLKLDEKWVGKQTTEQLMEYIKTIINSSLGFRGRVKKLTVVSK
Ga0316624_111200722	3300033486	Soil	VPEIEIKFKATLKLDERWVGKQTTEQLMECIKAKINSSLGFRGQVKKLTVVSK
Ga0316624_116692212	3300033486	Soil	MPEIEIKFKATLKLDEKWADGLTTEELIEYIKDRINSSMGDKGQVKKLSLVTK
Ga0316631_100516003	3300033493	Soil	MPEIEIKFKATLKLDEKWVDKQTTEELIEYIKAKINSSLGFRGQVKKLNVVSK
Ga0316628_1006341833	3300033513	Soil	MNLMPEIEIKFKATLRLDEKWVGKQTTEQLIEYIKARINRSLGFRGQVEKLTVISK
Ga0316628_1011830431	3300033513	Soil	GNIMPEIEIKFKATLKLDEKWVGKQTTEQLIEYIKDRINSSLGFRGQVKELTVVSK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F068420

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences