Metagenome / Metatranscriptome Family F068584

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F068584
Family Type	Metagenome / Metatranscriptome
Number of Sequences	124
Average Sequence Length	57 residues
Representative Sequence	MSNILKPIDLADRAIRRAVFAVFDAAEHRANRKGSERLLRMQERDKHQVREFIGGRP
Number of Associated Samples	72
Number of Associated Scaffolds	124

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	74.19 %
% of genes near scaffold ends (potentially truncated)	34.68 %
% of genes from short scaffolds (< 2000 bps)	88.71 %
Associated GOLD sequencing projects	67
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (70.968 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil (30.645 % of family members)
Environment Ontology (ENVO)	Unclassified (62.097 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (78.226 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 57.65% β-sheet: 0.00% Coil/Unstructured: 42.35%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.52
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.52
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 124 Family Scaffolds
PF00072	Response_reg	3.23
PF04392	ABC_sub_bind	3.23
PF03733	YccF	1.61
PF03401	TctC	0.81
PF07386	DUF1499	0.81
PF03411	Peptidase_M74	0.81
PF11494	Ta0938	0.81
PF12471	GTP_CH_N	0.81
PF00293	NUDIX	0.81
PF05930	Phage_AlpA	0.81
PF15956	DUF4760	0.81
PF00903	Glyoxalase	0.81
PF13365	Trypsin_2	0.81
PF12161	HsdM_N	0.81

COG ID	Name	Functional Category	% Frequency in 124 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	3.23
COG3304	Uncharacterized membrane protein YccF, DUF307 family	Function unknown [S]	1.61
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.81
COG3311	DNA-binding transcriptional regulator AlpA	Transcription [K]	0.81
COG3770	Murein endopeptidase MepA (D-alanyl-D-alanine-endopeptidase)	Cell wall/membrane/envelope biogenesis [M]	0.81
COG4446	Uncharacterized conserved protein, DUF1499 family	Function unknown [S]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.97 %
All Organisms	root	All Organisms	29.03 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.97 %
cellular organisms	root	All Organisms → cellular organisms	29.03 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.97 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	29.03 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.97 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	17.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.97 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	16.13 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.97 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	7.26 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.42 %
Micropepsales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Micropepsales	0.81 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.97 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.45 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.61 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.81 %
Micropepsaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Micropepsales → Micropepsaceae	0.81 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.81 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.97 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.45 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.61 %
Aliiroseovarius	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Aliiroseovarius	0.81 %
Rhizomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Micropepsales → Micropepsaceae → Rhizomicrobium	0.81 %
Sinorhizobium/Ensifer group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group	0.81 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.97 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.45 %
unclassified Aliiroseovarius	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Aliiroseovarius → unclassified Aliiroseovarius	0.81 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.81 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.81 %
Rhizomicrobium palustre	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Micropepsales → Micropepsaceae → Rhizomicrobium → Rhizomicrobium palustre	0.81 %
Sinorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium	0.81 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.97 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.45 %
Bradyrhizobium sp. NAS80.1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. NAS80.1	0.81 %
Sinorhizobium meliloti	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium → Sinorhizobium meliloti	0.81 %
Aliiroseovarius sp. S1123	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Aliiroseovarius → unclassified Aliiroseovarius → Aliiroseovarius sp. S1123	0.81 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.81 %
Rhizomicrobium palustre	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Micropepsales → Micropepsaceae → Rhizomicrobium → Rhizomicrobium palustre	0.81 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000580\|AF_2010_repII_A01DRAFT_1035138	Not Available	781	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10023686	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1677	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1029441	Not Available	1016	Open in IMG/M
3300000956\|JGI10216J12902_109972975	All Organisms → cellular organisms → Bacteria	900	Open in IMG/M
3300004267\|Ga0066396_10004785	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Aliiroseovarius → unclassified Aliiroseovarius → Aliiroseovarius sp. S1123	1429	Open in IMG/M
3300004268\|Ga0066398_10096741	Not Available	679	Open in IMG/M
3300004633\|Ga0066395_10615668	Not Available	638	Open in IMG/M
3300005332\|Ga0066388_100298608	Not Available	2255	Open in IMG/M
3300005332\|Ga0066388_100408373	Not Available	2003	Open in IMG/M
3300005332\|Ga0066388_100444150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium → Sinorhizobium meliloti	1939	Open in IMG/M
3300005332\|Ga0066388_100731061	All Organisms → cellular organisms → Bacteria	1592	Open in IMG/M
3300005332\|Ga0066388_100968474	Not Available	1419	Open in IMG/M
3300005332\|Ga0066388_101516628	Not Available	1173	Open in IMG/M
3300005332\|Ga0066388_101668800	All Organisms → cellular organisms → Bacteria	1126	Open in IMG/M
3300005332\|Ga0066388_101704021	Not Available	1115	Open in IMG/M
3300005332\|Ga0066388_104010820	Not Available	751	Open in IMG/M
3300005332\|Ga0066388_104719584	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	693	Open in IMG/M
3300005332\|Ga0066388_104816068	Not Available	686	Open in IMG/M
3300005332\|Ga0066388_105227566	Not Available	659	Open in IMG/M
3300005332\|Ga0066388_106538458	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300005332\|Ga0066388_107896481	Not Available	532	Open in IMG/M
3300005332\|Ga0066388_108461863	Not Available	512	Open in IMG/M
3300005363\|Ga0008090_10260994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1438	Open in IMG/M
3300005363\|Ga0008090_15781179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1060	Open in IMG/M
3300005363\|Ga0008090_15882249	Not Available	634	Open in IMG/M
3300005363\|Ga0008090_15885258	Not Available	737	Open in IMG/M
3300005363\|Ga0008090_15891396	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1377	Open in IMG/M
3300005445\|Ga0070708_100786016	Not Available	895	Open in IMG/M
3300005536\|Ga0070697_101169994	All Organisms → cellular organisms → Bacteria	685	Open in IMG/M
3300005713\|Ga0066905_100428357	Not Available	1081	Open in IMG/M
3300005713\|Ga0066905_100721912	Not Available	857	Open in IMG/M
3300005713\|Ga0066905_101097542	Not Available	706	Open in IMG/M
3300005713\|Ga0066905_101977290	Not Available	541	Open in IMG/M
3300005764\|Ga0066903_100016278	All Organisms → cellular organisms → Bacteria	7606	Open in IMG/M
3300005764\|Ga0066903_100302297	All Organisms → cellular organisms → Bacteria	2533	Open in IMG/M
3300005764\|Ga0066903_100450055	Not Available	2151	Open in IMG/M
3300005764\|Ga0066903_101106093	Not Available	1461	Open in IMG/M
3300005764\|Ga0066903_101377775	All Organisms → cellular organisms → Bacteria	1323	Open in IMG/M
3300005764\|Ga0066903_102131821	All Organisms → cellular organisms → Bacteria	1080	Open in IMG/M
3300005764\|Ga0066903_102204712	Not Available	1062	Open in IMG/M
3300005764\|Ga0066903_104321460	All Organisms → cellular organisms → Bacteria → Proteobacteria	759	Open in IMG/M
3300005764\|Ga0066903_104855965	Not Available	714	Open in IMG/M
3300005764\|Ga0066903_105536472	Not Available	665	Open in IMG/M
3300005764\|Ga0066903_106051033	Not Available	633	Open in IMG/M
3300005764\|Ga0066903_107272419	Not Available	573	Open in IMG/M
3300005764\|Ga0066903_108154809	Not Available	536	Open in IMG/M
3300005764\|Ga0066903_108605993	Not Available	519	Open in IMG/M
3300005937\|Ga0081455_10719064	Not Available	634	Open in IMG/M
3300006804\|Ga0079221_11176647	Not Available	593	Open in IMG/M
3300006854\|Ga0075425_100644181	All Organisms → cellular organisms → Bacteria	1218	Open in IMG/M
3300009553\|Ga0105249_10686475	Not Available	1083	Open in IMG/M
3300009792\|Ga0126374_10570791	Not Available	829	Open in IMG/M
3300010043\|Ga0126380_10078227	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1904	Open in IMG/M
3300010043\|Ga0126380_11122288	Not Available	672	Open in IMG/M
3300010046\|Ga0126384_10598725	Not Available	965	Open in IMG/M
3300010047\|Ga0126382_10545172	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	943	Open in IMG/M
3300010047\|Ga0126382_10728046	Not Available	836	Open in IMG/M
3300010048\|Ga0126373_11926148	Not Available	654	Open in IMG/M
3300010358\|Ga0126370_10023434	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3592	Open in IMG/M
3300010358\|Ga0126370_10400150	Not Available	1128	Open in IMG/M
3300010358\|Ga0126370_10581153	All Organisms → cellular organisms → Bacteria → Proteobacteria	963	Open in IMG/M
3300010358\|Ga0126370_10767615	Not Available	855	Open in IMG/M
3300010359\|Ga0126376_12192288	Not Available	597	Open in IMG/M
3300010360\|Ga0126372_10037057	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3144	Open in IMG/M
3300010360\|Ga0126372_12452048	Not Available	572	Open in IMG/M
3300010362\|Ga0126377_10220246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1830	Open in IMG/M
3300010362\|Ga0126377_11682086	Not Available	709	Open in IMG/M
3300010366\|Ga0126379_10145230	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2201	Open in IMG/M
3300010371\|Ga0134125_11122317	Not Available	860	Open in IMG/M
3300010376\|Ga0126381_103208901	Not Available	646	Open in IMG/M
3300010398\|Ga0126383_11793626	Not Available	702	Open in IMG/M
3300010398\|Ga0126383_12989143	Not Available	552	Open in IMG/M
3300010399\|Ga0134127_11115062	Not Available	853	Open in IMG/M
3300012361\|Ga0137360_10701393	Not Available	869	Open in IMG/M
3300012948\|Ga0126375_11206856	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300012951\|Ga0164300_10252657	Not Available	896	Open in IMG/M
3300012960\|Ga0164301_10370161	Not Available	992	Open in IMG/M
3300012961\|Ga0164302_10176027	Not Available	1289	Open in IMG/M
3300012971\|Ga0126369_10317328	Not Available	1567	Open in IMG/M
3300012971\|Ga0126369_10990682	Not Available	928	Open in IMG/M
3300012971\|Ga0126369_11136221	Not Available	870	Open in IMG/M
3300012986\|Ga0164304_10321431	Not Available	1069	Open in IMG/M
3300015371\|Ga0132258_11152367	Not Available	1960	Open in IMG/M
3300015374\|Ga0132255_101116655	Not Available	1185	Open in IMG/M
3300016270\|Ga0182036_10439051	Not Available	1024	Open in IMG/M
3300016294\|Ga0182041_11504628	Not Available	620	Open in IMG/M
3300016294\|Ga0182041_12237232	Not Available	511	Open in IMG/M
3300016341\|Ga0182035_11073735	Not Available	716	Open in IMG/M
3300016357\|Ga0182032_10062537	Not Available	2475	Open in IMG/M
3300016422\|Ga0182039_10836387	Not Available	819	Open in IMG/M
3300016445\|Ga0182038_10517026	Not Available	1020	Open in IMG/M
3300020579\|Ga0210407_10432016	All Organisms → cellular organisms → Bacteria	1030	Open in IMG/M
3300021168\|Ga0210406_10067019	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	3095	Open in IMG/M
3300021560\|Ga0126371_10558696	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1293	Open in IMG/M
3300021560\|Ga0126371_11226975	Not Available	885	Open in IMG/M
3300021560\|Ga0126371_13459688	Not Available	533	Open in IMG/M
3300025905\|Ga0207685_10641196	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300025916\|Ga0207663_10033922	Not Available	3046	Open in IMG/M
3300025939\|Ga0207665_10268189	Not Available	1267	Open in IMG/M
3300027874\|Ga0209465_10030325	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2544	Open in IMG/M
3300027874\|Ga0209465_10127546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1257	Open in IMG/M
3300031545\|Ga0318541_10222168	Not Available	1047	Open in IMG/M
3300031545\|Ga0318541_10464458	Not Available	708	Open in IMG/M
3300031561\|Ga0318528_10754546	Not Available	520	Open in IMG/M
3300031679\|Ga0318561_10433190	Not Available	723	Open in IMG/M
3300031781\|Ga0318547_10315601	Not Available	951	Open in IMG/M
3300031796\|Ga0318576_10537890	Not Available	551	Open in IMG/M
3300031798\|Ga0318523_10692182	Not Available	500	Open in IMG/M
3300031819\|Ga0318568_10925519	Not Available	539	Open in IMG/M
3300031879\|Ga0306919_11218516	Not Available	571	Open in IMG/M
3300031890\|Ga0306925_10132881	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. NAS80.1	2671	Open in IMG/M
3300031912\|Ga0306921_12733875	Not Available	506	Open in IMG/M
3300031945\|Ga0310913_11145711	Not Available	542	Open in IMG/M
3300031947\|Ga0310909_10297101	Not Available	1353	Open in IMG/M
3300032052\|Ga0318506_10411617	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300032059\|Ga0318533_10140259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1704	Open in IMG/M
3300032060\|Ga0318505_10529298	Not Available	555	Open in IMG/M
3300032076\|Ga0306924_11352416	Not Available	762	Open in IMG/M
3300032076\|Ga0306924_11976663	Not Available	602	Open in IMG/M
3300032091\|Ga0318577_10387936	Not Available	667	Open in IMG/M
3300032180\|Ga0307471_100799003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Micropepsales → Micropepsaceae → Rhizomicrobium → Rhizomicrobium palustre	1110	Open in IMG/M
3300032180\|Ga0307471_100839274	Not Available	1086	Open in IMG/M
3300032261\|Ga0306920_100185648	Not Available	3102	Open in IMG/M
3300032261\|Ga0306920_101319693	Not Available	1037	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.97%
Host-Associated	Host-Associated	4.03%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.97%
Plants	Host-Associated → Plants	4.03%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.97%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.42%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.61%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	61.29%
Loam	Environmental → Terrestrial → Soil → Loam	34.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.61%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.81%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	30.65%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	28.23%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.42%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	4.03%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.03%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.61%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.81%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	30.65%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	21.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.29%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.03%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	4.03%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.23%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.42%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.61%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.61%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.61%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.81%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.81%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004267	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A01DRAFT_10351381	3300000580	Forest Soil	LKPIDLADRAIRRAVFAVFDAAEHRVNRKGSERLLRMQERDKHQVREFIGGRP*
AF_2010_repII_A1DRAFT_100236861	3300000597	Forest Soil	PIDLADRAIRRAVFAVFDAAEHRANRKGSERLLRMQERDKHQVREFIGGRP*
AF_2010_repII_A100DRAFT_10294411	3300000655	Forest Soil	MSKILKPIDLADRAIRRAVFAVFDAAEHRVNRKGSERLLRMQERDKHQVREFIGGRP*
JGI10216J12902_1099729752	3300000956	Soil	MSNILKPIDLADRAIRRAVFAVLYAAEHRANRKGSEGLLWMQERDKHQVRVFIGDRP*
Ga0066396_100047851	3300004267	Tropical Forest Soil	MSNILKPIDLADRAIRRAVFAVLDGAEHRANRKGSEQLLRMQEHDKHQVHVFIGGRP*
Ga0066398_100967411	3300004268	Tropical Forest Soil	SAPMSNILKIADLTDHAIRRAVFAVFDAAEHRANRKGSERLLRMQERDKHQVREFIGVQP
Ga0066395_106156681	3300004633	Tropical Forest Soil	MSNILKPIDLADRAIRRAVFAVFDAAEHRANRKGSERLLRMQERDKHQVREFIGGQP*
Ga0066388_1002986083	3300005332	Tropical Forest Soil	MSNILKTIDLTDHAIRRAVFAVFAAAELALNRKGSEQLLRMQERDKHQVREFIGGLENAEFF*
Ga0066388_1004083735	3300005332	Tropical Forest Soil	VSPTMSNILKPIDLADRAIRRAVFAVLDAAEPRANRKGSEPLLRMQECDKHQVREFIGGRP*
Ga0066388_1004441502	3300005332	Tropical Forest Soil	MSNILKPIDLTDRAIRRAVFAVLDGLAAEHRADRKGSERLLRMQERDKHQVRGFIGGRP*
Ga0066388_1007310612	3300005332	Tropical Forest Soil	MSNFLKPVDLADHAIRRAVFAAFDGLAAEQRVNRNGSERLLRMQERDKHQATKAAASKAV
Ga0066388_1009684742	3300005332	Tropical Forest Soil	MSNILKPVDLADRAIRRAVFAVLDAAEHRANRRGSEPSLRMQECDKLQVREFIGGRP*
Ga0066388_1015166282	3300005332	Tropical Forest Soil	MSNILKTIDLTDHAIRRAVFAVFDTAEHRANRKGSERLSRMQERDKHQVCEFIGGQP*
Ga0066388_1016688001	3300005332	Tropical Forest Soil	MSNILKAIDLADRAIRRAVFAVLDAAEHRANRKGSEGLLRMQERDMHQVRVFIGGQP*
Ga0066388_1017040213	3300005332	Tropical Forest Soil	MSSILKAIDLADRAIRRAVFAVLNAAEHHANREASEGLLGVQERDKHPVRVFIGGRP*
Ga0066388_1040108201	3300005332	Tropical Forest Soil	LKRLRGDRQSDPRILKPIELTDHAIRRAVFAVLDGLAAEHRANRKGSERSLRMQERDKRQRNGGRTDDR*
Ga0066388_1047195842	3300005332	Tropical Forest Soil	MSNILKTIDLTDHAIRPAVFAVFDTAEHRANRKGSKRLLRMQESDKHQVREFIGGQP*
Ga0066388_1048160682	3300005332	Tropical Forest Soil	MSNILKIIDLADRTIRRTVFAVLDAAEHRADRKGSEPLLQMQQGDKHQVRLFIAGRP*
Ga0066388_1052275662	3300005332	Tropical Forest Soil	MSNILKAIDLADRAVRRAVFAVLDVAEHRANRTGSERLFRMQEHDKHQLREFIGGRP*
Ga0066388_1065384581	3300005332	Tropical Forest Soil	MSNILKPIDLADRAIRRAVFAVLDAAEHRANRKGSEQLLRMQERDKHQVHVFIGGRP*
Ga0066388_1078964811	3300005332	Tropical Forest Soil	MSNILKPIDLADRAIRRAVFAVFDAAEHRANRKGSERLLRMQERDKHQVREFIGGRP*
Ga0066388_1084618632	3300005332	Tropical Forest Soil	MSNILKTIDLTDHAIRRAVFAVFDTAEHRANQKGSERLSRMQERDKRQVREFIGGQP*
Ga0008090_102609942	3300005363	Tropical Rainforest Soil	MSNILKPIDLADRAIRRAVFAVFDAAEHRVNRKGSERLLRMQERDKHQVREFIGGRP*
Ga0008090_157811791	3300005363	Tropical Rainforest Soil	SNILKPFDLADRAVRRAVFAVLNAAEHRANRNGSERLLRMQECDKHQVPEFIGGRP*
Ga0008090_158822491	3300005363	Tropical Rainforest Soil	MSNILKPFDLADRAVRRAVFAVLDAAEHRANRKGSERLLRMQERDKHQVREFIGGRP*
Ga0008090_158852582	3300005363	Tropical Rainforest Soil	MSDILKIVDLTDHAIRRAVFAVFDAAEHRANRKGSERLLRMQERDKHQVREFIGGQP*
Ga0008090_158913962	3300005363	Tropical Rainforest Soil	MSNILKIMNLTDHAIRRAVFAVLDGLAAEHRVNRKGSERLLRMQERDKHQVREFIGG
Ga0070708_1007860162	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MSNILKIIDLTDHAIRRAVFAVLDGLAAEHRANRKGSERLLRMQEHDKHQLREFIGGRP*
Ga0070697_1011699941	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	DRAVRRVVFAVLDAAEYRANRKGSERLLRMQEHDKHQLREFIGGRP*
Ga0066905_1004283573	3300005713	Tropical Forest Soil	VSPAMSNILKPIDLADRAIRHAVFAMLDAAEHRANRKGSERLLRMQEHDKRQVREFIGGRP*
Ga0066905_1007219124	3300005713	Tropical Forest Soil	ETTKGRPTEVSPAMSNILKPIDLADRAIRRAVFAVLDGAEHRANRKGSEQLLRMQEHDKHQVHVFIGGRP*
Ga0066905_1010975421	3300005713	Tropical Forest Soil	KTIDLTDHAIRRAVFAVFDTAEHRANRKGSKRLLRMQESDKHQLHEFIGGQP*
Ga0066905_1019772901	3300005713	Tropical Forest Soil	MSNILKPIDLADRATRRAVFAVFDAAEHRANRKASERLLRMQERDKHQVREFIRGRP*
Ga0066903_1000162786	3300005764	Tropical Forest Soil	MSTILKPIDLADRAIRRAVFAVLEAAEHRANRQGSERWLPMQERDKHQFREFLGGRP*
Ga0066903_1003022974	3300005764	Tropical Forest Soil	MSNILKPIDLADRAIRRAVFAVFDAAEHRANRKGGEELLRMQECDKQQVREFIGGRP*
Ga0066903_1004500554	3300005764	Tropical Forest Soil	MSDILKTIDLTDHAIRRAVFAVFDPAEHRANRKGSERLLRMQEHDKHQVREFIGGQP*
Ga0066903_1011060932	3300005764	Tropical Forest Soil	MSNILKPINLADRAIRRAVFAVLDAAELRANRKGSEPCDKHQVRGFGGRP*
Ga0066903_1013777752	3300005764	Tropical Forest Soil	MSNILKAIDLADRAIRRAVFATLDAPEHRANRKGSERLLRMQERDKHQVREFIGGRP*
Ga0066903_1021318213	3300005764	Tropical Forest Soil	MSNILKPIDLADRAIRRAVFAVLDGLAAERRASRKGSERLLRMQERDKHQVREFIGGRL*
Ga0066903_1022047121	3300005764	Tropical Forest Soil	MSNILKPIDLADRAIRRAVFAVFDADEHRANRKGSERLLRMQERDKHQVREFIGGRP*
Ga0066903_1043214601	3300005764	Tropical Forest Soil	MSNILRTIDLTDHAIRRAVFAVFDAAEHRANRKGSERLLRMQERDKHQV
Ga0066903_1048559653	3300005764	Tropical Forest Soil	MSDILKTIDLTDHAIRRAVFALLDGAAAEHRANRKGSERLLRMQERDKHQVREFIG
Ga0066903_1055364721	3300005764	Tropical Forest Soil	MSNILKPIDLADRAIRRAVFAVFDAAEHRANRKGSERLLRMQERDKHQVREFIGGRR*
Ga0066903_1060510332	3300005764	Tropical Forest Soil	MSNILKTIDLTDHAIRRAVFAVFDAAEHRANRKGSERLLRMQERDKHQV
Ga0066903_1072724192	3300005764	Tropical Forest Soil	MSNILKAIDLTDHVIRRAVFAVFAATDHRANRKGSERLSRMQERDKHQVREFIGGQP*
Ga0066903_1081548092	3300005764	Tropical Forest Soil	MSNILKPIDLTDRAIRRAVFAVLNGAEHRANRKGSERLLRMQERDKHQVREFIEG
Ga0066903_1086059932	3300005764	Tropical Forest Soil	MSNILKPIDLADRAIRHAVFAVLDAAEHRANRKGSERLLRMQERDKHQAREFIGGQP*
Ga0081455_107190641	3300005937	Tabebuia Heterophylla Rhizosphere	KPIDLADRAIRRAVFAALDAAEHRANRKGSERLLRMQERDKHQVRVLIGSRP*
Ga0079221_111766473	3300006804	Agricultural Soil	DRAIRRAVFAVFDAAEHRANRKGSERLLRMQERDKHQVREFIGGRP*
Ga0075425_1006441813	3300006854	Populus Rhizosphere	MSNILKAIDLADRAIRRAVFAVLNAAEHHANREASEGLLGVQERDKHQVRVFIGGRP*
Ga0105249_106864756	3300009553	Switchgrass Rhizosphere	IRRAVFAVLDAAGHRANRKGSEGCCGCKGREKHQDREFIGGRP*
Ga0126374_105707912	3300009792	Tropical Forest Soil	MSNVLKPIDLADRAIRRAVFAVLDAAEHRANGKGSERLLWMQERDKHQVRVFIGGRP*
Ga0126380_100782274	3300010043	Tropical Forest Soil	MSNILKPIDLADRAIRRAVFAVLDAAEHRANGKGSERLLWMQERDKHQVRVFIGGRP*
Ga0126380_111222882	3300010043	Tropical Forest Soil	MSNILKTIDLTDHAIRRAVFAVFDTAEHRANRKGSERFLRMQERDKHQVREFIGGRP*
Ga0126384_105987252	3300010046	Tropical Forest Soil	MSNILKTIDLTDDAIRRAVFAVFDAAEHRTNRRGSERLLRMQERDKHQVREFIGGQP*
Ga0126382_105451724	3300010047	Tropical Forest Soil	DRAIRRAVFAVLDGAEHRANRKGSEQLLRMQEHDKHQVHVFIGGRP*
Ga0126382_107280462	3300010047	Tropical Forest Soil	MSNILKTIDLTDHAIRRAVFAVFDTAEHRANRKGSERLLRMQERDKHQVREFIGVQP*
Ga0126373_119261483	3300010048	Tropical Forest Soil	DRAIRRAAFAVLDAAEHRANRKESEQLLRMQERDRHQVRVFIGGRP*
Ga0126370_100234341	3300010358	Tropical Forest Soil	MSNILKPIDLADRAIRRAVFAVLDGAEHRANRKGSEQLLRMQERDKHQVHVLIGGRP*
Ga0126370_104001502	3300010358	Tropical Forest Soil	MSNILKTIDLTDHAIRRAVFAVLDGPAAEHRANRKGGERLLRMQERDKHQVREFIGGQP*
Ga0126370_105811531	3300010358	Tropical Forest Soil	MSNILKPIDLTDRAIRRAVFAVLDGLAAEHRADRKGSERLLRMQERDKHQVREFIGGRP*
Ga0126370_107676152	3300010358	Tropical Forest Soil	MSNILKPIDLVDRAIRRAVLAVLDGTEHRANRSERLLRMQERDEHQVREFIGDQP*
Ga0126376_121922882	3300010359	Tropical Forest Soil	MSNILKPIDLTDRAIRRAVFAVLDAAEHRANRKEGDPLLPMQEHDKHQLREFIGGRP*
Ga0126372_100370576	3300010360	Tropical Forest Soil	IDLTDRAIRRAVFAVLDGLAAEHRADRKGSERLLRMQERDKHQVRGFIGGRP*
Ga0126372_124520482	3300010360	Tropical Forest Soil	MSNILKTIDLADRAIRRAVFAVLDAAEHRADRKGSELLLQMQQGDKHQGRLFIGGRP*
Ga0126377_102202463	3300010362	Tropical Forest Soil	MSNILKPVDLADRAIRRAVLAMLDAAEHRANGKGSERLLWMQERDKHQVRVFIGGRP*
Ga0126377_116820863	3300010362	Tropical Forest Soil	MLNILKAGDVADRAVRRAVFAVLDPAVHRANRKGSERLLRMQDHDKEHLREFSGGRP*
Ga0126379_101452305	3300010366	Tropical Forest Soil	MSNILKPIDLVDRAIRRAVFAVLDGTEHRANRKGSEQLLRMQERDKHQVHVFIEGRP*
Ga0134125_111223173	3300010371	Terrestrial Soil	MPNILNPIDLADRAIRRAVFAVLDAAEHRANRKGSEGCCVCKKREKHQVRELIGGRP*
Ga0126381_1032089012	3300010376	Tropical Forest Soil	MSNILKIVDLTDYAVRRALFAVLDGLAAEHRANRKGSERLLRMQERDK
Ga0126383_117936262	3300010398	Tropical Forest Soil	MSNILKTIDLTDHAIRRAVFALLDGPAAEHRANRKGSERLLRMRERDKHQVREFTGGQP*
Ga0126383_129891431	3300010398	Tropical Forest Soil	GRSTEVSPAMSNILKPIDLADRAIRRAVFAVLDGAEHRANRKGSERLLRMQERDKHQVREFIGGRP*
Ga0134127_111150622	3300010399	Terrestrial Soil	MPNILNPIDLADRAIRRAVFAVLDAAEHRANRKGSEGCCGCKGREKHQVREFIGGRP*
Ga0137360_107013933	3300012361	Vadose Zone Soil	DVFGQTLNPIDLADRTIRRAVFAVLEAAEHCANRKGNEGSCGCKRREKRQVREFIGGRP*
Ga0126375_112068561	3300012948	Tropical Forest Soil	MSNILKIIDLTDHAVRRAVFAVLDGPAAEHRANRKGSKRLLRMQESDKHQVREFIGDQP*
Ga0164300_102526571	3300012951	Soil	AMPNILNPIDLADRAIRRAVFAVLDAAEHRANRKGSEGCCGCKGREKHQVREFIGGRP*
Ga0164301_103701612	3300012960	Soil	MPNILNPIDLADRAIRRAVFGVLDAAEHRAKPHRKRELLRMQKREKHQVREFIGGRP*
Ga0164302_101760272	3300012961	Soil	MPNILNPIDLAARAIRRAVFAVLDAAEHRANRKGSKGCCGCKGREKHQVREFIGGRP*
Ga0126369_103173281	3300012971	Tropical Forest Soil	KPIDLADRAIRRAVFAVFDAAEHRANRKGSARLLRMQERDKHQVREFIGGRP*
Ga0126369_109906822	3300012971	Tropical Forest Soil	MSNVLKTIDLTDHAIRRAVFAVFDTAEHRANRKGSERLLRQERDKHQVREFIGGQP*
Ga0126369_111362211	3300012971	Tropical Forest Soil	TEVSLAMSNILKPIDRVDRAIRRAVFAVLDGTEHRANRKGSEQLLRMQERDKHQVHVFIEGRP*
Ga0164304_103214314	3300012986	Soil	DLADRAIRRAVFGVLDAAEHRAKPHRKRELLRMQKREKHQVREFIGGRP*
Ga0132258_111523673	3300015371	Arabidopsis Rhizosphere	MSNILKAIDLADRAIRRAVFAVLNAAEHRANREGSEGLLGVQERDKHQVRVFIGGR*
Ga0132255_1011166553	3300015374	Arabidopsis Rhizosphere	MSNILKAIDLADRAIRRAVFAVLNAAEHHANREASEGLLGVQERDKHQVRVFIGGR*
Ga0182036_104390511	3300016270	Soil	GEKQSAPMSTILKIVDLTDHAIRRAVFAVFDAAEHHANRKGSEQLLRMQERDKHQVREFIGGQP
Ga0182041_115046282	3300016294	Soil	MSNILKPIDLADRAIRRAVFAVLDAAEHRANGKGSERLLWMQERDKHQVRVFIGGRP
Ga0182041_122372321	3300016294	Soil	DQQSDPAMSNILKTIDLTDHAIRRAVFAVFDTAEHRANRKGSERLLRMQERDKHQVREFIGGQP
Ga0182035_110737352	3300016341	Soil	MSNILKPIDLADRAIRRAVFAVFNAAEHRADRKGSERLLRMQERDKHQVCEFIGGR
Ga0182032_100625371	3300016357	Soil	RQRGDQRSDPAMLNILKTIDLTDDAIRRAVFAVFCAAEHRANRKGSERLLRMQERDKHQVREFIGGQP
Ga0182039_108363871	3300016422	Soil	QSDPAMSNILKTIDLTDHAIRRAVFAVLDGLAAEHRANRKGSERLVRMQERDKHQVREFIGGRP
Ga0182038_105170261	3300016445	Soil	RGDQRSDPAMLNILKTIDLTDDAIRRAVFAVFYAAEHRANRKGSERLLRMQERDKHQVREFIGVQP
Ga0210407_104320162	3300020579	Soil	MPYRLMRRIAAALDAAEHRASRKGSERLLRMEERDKHQVREFIGGRP
Ga0210406_100670197	3300021168	Soil	MPNILNPIDLADRAIRRAVFGVLDAAEHRAKPHRKRELLRMQKREKHQVREFIGGRP
Ga0126371_105586963	3300021560	Tropical Forest Soil	DLTDHAIRRAVFAVFAAAEHRADRKGSERLLRTQERDKHQVREFIGGQP
Ga0126371_112269752	3300021560	Tropical Forest Soil	MSNILKPIDLVDRAIRRAVFAVLDGTEHRANRKGSEQLLRMQERDKHQVHVFIEGRP
Ga0126371_134596881	3300021560	Tropical Forest Soil	IDLADRAIRRAVFAVLDAAAHRANRRGSAPLLRMQECDKHQVREFIGGRP
Ga0207685_106411961	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MPNILNPIDLADRAIRRAVFAVLDAAEHRANRKGSEGCCVCKKREKHQVRELIGGRP
Ga0207663_100339226	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MPNILNPIDLPDRAIRRAVFAVLDAAGHRANRKGSEGCCVCKKREKHQVRELIGGRP
Ga0207665_102681893	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MPNILNPIDLADRAIRRAVFAVLDAAGHRANRKGSEGCCGCKGREKHQVREFIGGRP
Ga0209465_100303253	3300027874	Tropical Forest Soil	MSNILKPIDLTDRAIRRAVFAVLDGLAAVHRADRKGSERLLRMQERDKHQVREFIGGRP
Ga0209465_101275462	3300027874	Tropical Forest Soil	MSNILKTIDLTDHAIRRAVFAVFDTAEHRANRKGSERLLRQERDKHQVREFIGGQP
Ga0318541_102221681	3300031545	Soil	MLNILKTIDLTDDAIRRAVFAVFCAAEHRANRKGSERLLRMQERDKHQVREFIGGRR
Ga0318541_104644581	3300031545	Soil	MSNILKPIDLADRAIRRAVFAVFNAAEHRADRKGSERLLRMQERDKHQVCEFIGGRP
Ga0318528_107545462	3300031561	Soil	MLNILKTIDLTDDAIRRAVFAVFCAAEHRANRKGSERLLRMQERDKHQVREFIGGQP
Ga0318561_104331902	3300031679	Soil	MSNILKTIDLTDHAIRRAIFAVLDGPAAEHRANRKGGERLLRMQERDKHQVREFIGGQP
Ga0318547_103156011	3300031781	Soil	SNILKTIDLTDHAIRRAIFAVLDGPAAEHRANRKGGERLLRMQERDKHQVREFIGGQP
Ga0318576_105378901	3300031796	Soil	GLKRQRGDQQSDPAMSNILKTIDLTDHAIRRAVFAVLDGLAAEHRANRKGSERLVRMQERDKHQVREFIGGRP
Ga0318523_106921821	3300031798	Soil	MLNILKTIDLTDDAIRRAVFAVFCAAEHRANRKGSERLLRMQERDKHQVREFIGVQP
Ga0318568_109255192	3300031819	Soil	MSNILKTIDLTDHAIRRAVFAVFDSAEHRANRKGSERLLRMQERDKHQVREFIGVQ
Ga0306919_112185162	3300031879	Soil	MSNILKTIDLTDHAIRRAVFAVLDGLAAEHRANRKGSERLVRMQERDKHQVREFIGGRP
Ga0306925_101328813	3300031890	Soil	MSNILKPSDLADRAIRRAVFAVFDAAEHHANRKGSEQLLRMHERDKHQVREFIGGRP
Ga0306921_127338751	3300031912	Soil	MSNILKTIDLTDHAIRRAVFAVLDGPAAEHRANRKGSERLLRMQERDKHQVREFIGGQP
Ga0310913_111457111	3300031945	Soil	MSNILKPIDLADRAIRRAVFAVFDAAEHHANRKGSEQLLRMQERDKHQVREFIGGRP
Ga0310909_102971013	3300031947	Soil	MSNILKPIDLADRAIRRAVFAVFDAAEHRADRKGSERLLRMQERDKHQVCEFIGGRP
Ga0318506_104116172	3300032052	Soil	MSNILKPIDLADRAIRRAVFAVFNAAEHRADRKGSERLLRMQERDKHQVREFIGGQP
Ga0318533_101402591	3300032059	Soil	MSNILKPIDLADRAIRRAVFAVFDAAEHHANRKGSEQLLRMHERDKHQVREFIGGRP
Ga0318505_105292981	3300032060	Soil	MSNILKTIDLVARAIRRAVFAMLDAAEHRARKGLLRMQERDKHKFA
Ga0306924_113524161	3300032076	Soil	MSNILKTIDLTDHAIRRAVFAVLDGPAAEHRANRKGSERLLRMQERDKHQVR
Ga0306924_119766631	3300032076	Soil	MSNILKTIDLTDHAIRRAVFAVLDGPAAEHRANRKGSERLLRMQERDKHQVREFI
Ga0318577_103879362	3300032091	Soil	RQRGDQQSDPAMSNILKTIDLTDHAIRRAVFAVLDGLAAEHRANRKGSERLVRMQERDKHQVREFIGGRP
Ga0307471_1007990034	3300032180	Hardwood Forest Soil	SAIFHMPYRLMRRIAAALDAAEHRASRKGSERLLRMEERDKHQVREFIGGRP
Ga0307471_1008392742	3300032180	Hardwood Forest Soil	MPNILKPIDLADRAIRRAVFAVLEAAEHRANRKGSEGCCGCKGREKHQVREFIGGRP
Ga0306920_1001856482	3300032261	Soil	MSNILKTIDLTDHAIRRAIFAVLDGPAAEHRANRKGGERLLRMQERDKHQVREFIVG
Ga0306920_1013196932	3300032261	Soil	MSNILKTIDLTDHAIRRAVFAVFDTAEHRANRKGSERLLRMQERDKHQVREFIGVQP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F068584

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences