Metagenome / Metatranscriptome Family F068788

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F068788
Family Type	Metagenome / Metatranscriptome
Number of Sequences	124
Average Sequence Length	67 residues
Representative Sequence	WHAKGVDMAFYHIDDIGIGAMYIALKELKAKGGPFDEAAKMRLPRDVAAKVIDQADWLARAKKYGVVN
Number of Associated Samples	95
Number of Associated Scaffolds	124

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	4.92 %
% of genes near scaffold ends (potentially truncated)	90.32 %
% of genes from short scaffolds (< 2000 bps)	89.52 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.33

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (54.839 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere (8.871 % of family members)
Environment Ontology (ENVO)	Unclassified (51.613 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (67.742 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 51.04% β-sheet: 0.00% Coil/Unstructured: 48.96%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.33
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.33
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 124 Family Scaffolds
PF13360	PQQ_2	19.35
PF01011	PQQ	5.65
PF07676	PD40	4.03
PF07626	PSD3	3.23
PF07995	GSDH	2.42
PF00990	GGDEF	2.42
PF12796	Ank_2	1.61
PF13570	PQQ_3	1.61
PF13620	CarboxypepD_reg	1.61
PF13714	PEP_mutase	1.61
PF13649	Methyltransf_25	1.61
PF02894	GFO_IDH_MocA_C	1.61
PF04307	YdjM	0.81
PF07635	PSCyt1	0.81
PF13489	Methyltransf_23	0.81
PF03167	UDG	0.81
PF01738	DLH	0.81
PF13586	DDE_Tnp_1_2	0.81
PF04168	Alpha-E	0.81
PF01609	DDE_Tnp_1	0.81
PF12686	DUF3800	0.81
PF00378	ECH_1	0.81
PF08888	HopJ	0.81
PF02782	FGGY_C	0.81
PF00082	Peptidase_S8	0.81
PF07637	PSD5	0.81
PF00171	Aldedh	0.81
PF00083	Sugar_tr	0.81
PF01797	Y1_Tnp	0.81
PF07366	SnoaL	0.81
PF13185	GAF_2	0.81

COG ID	Name	Functional Category	% Frequency in 124 Family Scaffolds
COG2133	Glucose/arabinose dehydrogenase, beta-propeller fold	Carbohydrate transport and metabolism [G]	2.42
COG0673	Predicted dehydrogenase	General function prediction only [R]	1.61
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.81
COG0692	Uracil-DNA glycosylase	Replication, recombination and repair [L]	0.81
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.81
COG1573	Uracil-DNA glycosylase	Replication, recombination and repair [L]	0.81
COG1943	REP element-mobilizing transposase RayT	Mobilome: prophages, transposons [X]	0.81
COG1988	Membrane-bound metal-dependent hydrolase YbcI, DUF457 family	General function prediction only [R]	0.81
COG2307	Uncharacterized conserved protein, Alpha-E superfamily	Function unknown [S]	0.81
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.81
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.81
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.81
COG3663	G:T/U-mismatch repair DNA glycosylase	Replication, recombination and repair [L]	0.81
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.81
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.81
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.81
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	54.84 %
Unclassified	root	N/A	45.16 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	54.84 %
Unclassified	root	N/A	45.16 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	54.84 %
Unclassified	root	N/A	45.16 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.16 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	20.16 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	12.10 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.84 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.16 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	12.10 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	8.87 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3.23 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	2.42 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.61 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.16 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	12.10 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.06 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	3.23 %
unclassified Blastocatellia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia	2.42 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.81 %
Candidatus Eisenbacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria	0.81 %
Acidobacteria bacterium 13_1_20CM_2_65_9	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_65_9	0.81 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.16 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	12.10 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.06 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	3.23 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	2.42 %
Bryobacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae	0.81 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.81 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	0.81 %
Acidobacteria bacterium 13_1_20CM_2_65_9	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_65_9	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.16 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	12.10 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.06 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	3.23 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	2.42 %
Bryobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter	0.81 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.81 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	0.81 %
Acidobacteria bacterium 13_1_20CM_2_65_9	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_65_9	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.16 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	12.10 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.06 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	3.23 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	2.42 %
Bryobacter aggregatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	0.81 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.81 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	0.81 %
Acidobacteria bacterium 13_1_20CM_2_65_9	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_65_9	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000891\|JGI10214J12806_11178690	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300000956\|JGI10216J12902_118161894	Not Available	505	Open in IMG/M
3300004013\|Ga0055465_10061371	All Organisms → cellular organisms → Bacteria	1039	Open in IMG/M
3300004081\|Ga0063454_100699830	All Organisms → cellular organisms → Bacteria → Acidobacteria	763	Open in IMG/M
3300004114\|Ga0062593_100094125	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2084	Open in IMG/M
3300004480\|Ga0062592_100343344	All Organisms → cellular organisms → Bacteria	1156	Open in IMG/M
3300005294\|Ga0065705_10370042	Not Available	908	Open in IMG/M
3300005330\|Ga0070690_101699398	Not Available	513	Open in IMG/M
3300005331\|Ga0070670_102137261	Not Available	516	Open in IMG/M
3300005333\|Ga0070677_10276065	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	845	Open in IMG/M
3300005335\|Ga0070666_10336269	Not Available	1079	Open in IMG/M
3300005335\|Ga0070666_11097101	Not Available	592	Open in IMG/M
3300005353\|Ga0070669_101598120	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	567	Open in IMG/M
3300005354\|Ga0070675_100531933	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1061	Open in IMG/M
3300005356\|Ga0070674_100236998	All Organisms → cellular organisms → Bacteria → Acidobacteria	1426	Open in IMG/M
3300005356\|Ga0070674_102135792	Not Available	511	Open in IMG/M
3300005364\|Ga0070673_100573581	All Organisms → cellular organisms → Bacteria	1027	Open in IMG/M
3300005364\|Ga0070673_100708637	Not Available	925	Open in IMG/M
3300005366\|Ga0070659_102027924	Not Available	517	Open in IMG/M
3300005441\|Ga0070700_100423077	All Organisms → cellular organisms → Bacteria	1007	Open in IMG/M
3300005441\|Ga0070700_101140973	Not Available	648	Open in IMG/M
3300005441\|Ga0070700_101836999	Not Available	523	Open in IMG/M
3300005456\|Ga0070678_100100290	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2242	Open in IMG/M
3300005456\|Ga0070678_100912203	All Organisms → cellular organisms → Bacteria → Acidobacteria	804	Open in IMG/M
3300005456\|Ga0070678_102195053	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300005466\|Ga0070685_10532690	Not Available	836	Open in IMG/M
3300005468\|Ga0070707_100828452	Not Available	889	Open in IMG/M
3300005543\|Ga0070672_100114079	All Organisms → cellular organisms → Bacteria → Acidobacteria	2206	Open in IMG/M
3300005578\|Ga0068854_101137251	Not Available	697	Open in IMG/M
3300005615\|Ga0070702_101007218	Not Available	660	Open in IMG/M
3300005616\|Ga0068852_102496532	Not Available	537	Open in IMG/M
3300005616\|Ga0068852_102696109	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	516	Open in IMG/M
3300005617\|Ga0068859_102736227	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_65_9	542	Open in IMG/M
3300005617\|Ga0068859_102958414	Not Available	520	Open in IMG/M
3300005618\|Ga0068864_100264287	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1601	Open in IMG/M
3300005618\|Ga0068864_101534211	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	669	Open in IMG/M
3300005718\|Ga0068866_10815832	Not Available	650	Open in IMG/M
3300005841\|Ga0068863_101305409	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	732	Open in IMG/M
3300005841\|Ga0068863_102184416	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	563	Open in IMG/M
3300005844\|Ga0068862_102016228	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	588	Open in IMG/M
3300006046\|Ga0066652_100855706	Not Available	869	Open in IMG/M
3300006606\|Ga0074062_12961634	All Organisms → cellular organisms → Bacteria	1593	Open in IMG/M
3300006881\|Ga0068865_100801145	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	813	Open in IMG/M
3300006953\|Ga0074063_13990086	All Organisms → cellular organisms → Bacteria → Proteobacteria	706	Open in IMG/M
3300006969\|Ga0075419_10544813	Not Available	810	Open in IMG/M
3300009101\|Ga0105247_10522013	Not Available	869	Open in IMG/M
3300009148\|Ga0105243_11272861	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	751	Open in IMG/M
3300009176\|Ga0105242_11931253	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300009177\|Ga0105248_12931047	Not Available	544	Open in IMG/M
3300009553\|Ga0105249_12114060	Not Available	636	Open in IMG/M
3300009610\|Ga0105340_1293169	Not Available	707	Open in IMG/M
3300010147\|Ga0126319_1017148	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	522	Open in IMG/M
3300010397\|Ga0134124_12870386	Not Available	526	Open in IMG/M
3300010399\|Ga0134127_10777875	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1004	Open in IMG/M
3300010403\|Ga0134123_13207454	Not Available	526	Open in IMG/M
3300012212\|Ga0150985_114250194	All Organisms → cellular organisms → Bacteria → Acidobacteria	1066	Open in IMG/M
3300012212\|Ga0150985_119318659	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	501	Open in IMG/M
3300012469\|Ga0150984_116891700	All Organisms → cellular organisms → Bacteria → Acidobacteria	863	Open in IMG/M
3300012469\|Ga0150984_116901470	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1484	Open in IMG/M
3300012891\|Ga0157305_10020583	Not Available	1184	Open in IMG/M
3300013297\|Ga0157378_11280472	Not Available	774	Open in IMG/M
3300013297\|Ga0157378_13136676	Not Available	513	Open in IMG/M
3300013308\|Ga0157375_11093726	Not Available	933	Open in IMG/M
3300014326\|Ga0157380_10222294	All Organisms → cellular organisms → Bacteria	1690	Open in IMG/M
3300014326\|Ga0157380_10303060	All Organisms → cellular organisms → Bacteria	1473	Open in IMG/M
3300014326\|Ga0157380_12344321	Not Available	599	Open in IMG/M
3300014745\|Ga0157377_11059839	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	618	Open in IMG/M
3300014745\|Ga0157377_11693158	Not Available	510	Open in IMG/M
3300014969\|Ga0157376_10415054	Not Available	1305	Open in IMG/M
3300015200\|Ga0173480_10939063	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	565	Open in IMG/M
3300015371\|Ga0132258_10507186	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	3018	Open in IMG/M
3300015371\|Ga0132258_10957916	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2162	Open in IMG/M
3300015373\|Ga0132257_102438563	Not Available	679	Open in IMG/M
3300015374\|Ga0132255_100369018	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2083	Open in IMG/M
3300018081\|Ga0184625_10231413	All Organisms → cellular organisms → Bacteria	969	Open in IMG/M
3300018082\|Ga0184639_10652294	Not Available	510	Open in IMG/M
3300018476\|Ga0190274_10315038	Not Available	1466	Open in IMG/M
3300018476\|Ga0190274_11766174	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	713	Open in IMG/M
3300018481\|Ga0190271_10978093	All Organisms → cellular organisms → Bacteria → Acidobacteria	971	Open in IMG/M
3300021082\|Ga0210380_10023736	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2607	Open in IMG/M
3300021082\|Ga0210380_10273821	All Organisms → cellular organisms → Bacteria	767	Open in IMG/M
3300022756\|Ga0222622_11413501	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300023069\|Ga0247751_1099040	Not Available	524	Open in IMG/M
3300025567\|Ga0210076_1144282	Not Available	516	Open in IMG/M
3300025899\|Ga0207642_10799557	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300025907\|Ga0207645_10685313	Not Available	696	Open in IMG/M
3300025907\|Ga0207645_10726436	Not Available	675	Open in IMG/M
3300025923\|Ga0207681_10906028	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	738	Open in IMG/M
3300025923\|Ga0207681_11553853	Not Available	554	Open in IMG/M
3300025926\|Ga0207659_11548699	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	566	Open in IMG/M
3300025930\|Ga0207701_10107072	Not Available	2503	Open in IMG/M
3300025930\|Ga0207701_10332890	Not Available	1315	Open in IMG/M
3300025936\|Ga0207670_10379259	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1126	Open in IMG/M
3300025936\|Ga0207670_10874460	Not Available	752	Open in IMG/M
3300025937\|Ga0207669_11411557	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300025938\|Ga0207704_10058546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2373	Open in IMG/M
3300025940\|Ga0207691_10839770	Not Available	771	Open in IMG/M
3300025941\|Ga0207711_10447977	All Organisms → cellular organisms → Bacteria → Acidobacteria	1202	Open in IMG/M
3300025960\|Ga0207651_12000044	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300025972\|Ga0207668_10189265	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	1630	Open in IMG/M
3300026075\|Ga0207708_11266085	Not Available	646	Open in IMG/M
3300026095\|Ga0207676_10485157	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1171	Open in IMG/M
3300026095\|Ga0207676_10949527	Not Available	845	Open in IMG/M
3300026121\|Ga0207683_10939308	All Organisms → cellular organisms → Bacteria → Acidobacteria	803	Open in IMG/M
3300028380\|Ga0268265_10200035	Not Available	1733	Open in IMG/M
3300031538\|Ga0310888_10387326	Not Available	818	Open in IMG/M
3300031538\|Ga0310888_10444648	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	767	Open in IMG/M
3300031538\|Ga0310888_10810122	Not Available	580	Open in IMG/M
3300031892\|Ga0310893_10525417	Not Available	534	Open in IMG/M
3300031908\|Ga0310900_10040152	All Organisms → cellular organisms → Bacteria	2668	Open in IMG/M
3300031940\|Ga0310901_10026741	All Organisms → cellular organisms → Bacteria	1728	Open in IMG/M
3300032002\|Ga0307416_100967777	All Organisms → cellular organisms → Bacteria	953	Open in IMG/M
3300032012\|Ga0310902_10683186	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	690	Open in IMG/M
3300032075\|Ga0310890_11608755	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300032122\|Ga0310895_10021123	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2106	Open in IMG/M
3300032144\|Ga0315910_11541050	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	518	Open in IMG/M
3300032157\|Ga0315912_10344197	All Organisms → cellular organisms → Bacteria → Proteobacteria	1177	Open in IMG/M
3300032174\|Ga0307470_10870772	Not Available	705	Open in IMG/M
3300034148\|Ga0364927_0018605	Not Available	1619	Open in IMG/M
3300034148\|Ga0364927_0051052	All Organisms → cellular organisms → Bacteria	1081	Open in IMG/M
3300034148\|Ga0364927_0160155	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	651	Open in IMG/M
3300034664\|Ga0314786_156714	Not Available	537	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	54.84%
Environmental	Environmental	45.16%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	54.84%
Terrestrial	Environmental → Terrestrial	37.90%
Aquatic	Environmental → Aquatic	7.26%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	35.48%
Rhizosphere	Host-Associated → Plants → Rhizosphere	32.26%
Rhizoplane	Host-Associated → Plants → Rhizoplane	22.58%
Sediment	Environmental → Aquatic → Sediment	3.23%
Freshwater	Environmental → Aquatic → Freshwater	2.42%
Floodplain	Environmental → Terrestrial → Floodplain	2.42%
Marine	Environmental → Aquatic → Marine	1.61%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	25.81%
Soil	Host-Associated → Plants → Rhizosphere → Soil	18.55%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	14.52%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.71%
Loam	Environmental → Terrestrial → Soil → Loam	9.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.84%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.23%
Soil	Host-Associated → Plants → Rhizoplane → Soil	3.23%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	2.42%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.61%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.61%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	18.55%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	14.52%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.71%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	10.48%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.87%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	8.06%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.84%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.03%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.23%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	3.23%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.42%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	2.42%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.61%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.61%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.81%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.81%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.81%

Habitat	Taxonomy	Distribution
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	8.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	8.06%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	8.06%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	8.06%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.65%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.84%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.84%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	4.03%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.23%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.23%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	3.23%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.23%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.42%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	2.42%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.42%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.42%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.61%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.61%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.61%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	1.61%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.61%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.61%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.61%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.81%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.81%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.81%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.81%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.81%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.81%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004013	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006606	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300010147	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012891	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S148-409B-2	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300023069	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S049-202B-5	Environmental	Open in IMG/M
3300025567	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031940	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300032144	Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil	Environmental	Open in IMG/M
3300032157	Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soil	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300034148	Sediment microbial communities from East River floodplain, Colorado, United States - 18_j17	Environmental	Open in IMG/M
3300034664	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10214J12806_111786902	3300000891	Soil	AFYHIDDIGIGAMYIALKELKAKGGPFDEAAKMRLPRDIAAKVIDQADWLARAKRYGVIG
JGI10216J12902_1181618941	3300000956	Soil	DMAFYHIDDIGIGAMYIALKEMKAKGGAFDEAAKWRLPRDVAARLIDQAEWLARAKKYGVVS*
Ga0055465_100613712	3300004013	Natural And Restored Wetlands	MSDDDRSRRFDDIGIGAMDTTLKELKAKDGPFDEAAKVRLPRDVAAKAIDQADWLARAKKYGVIS*
Ga0063454_1006998302	3300004081	Soil	TLKKPLMIGSTGLAAEWHAKGVDMAFYHIDDIGIGAMYIALKEMKAKGGPFEEAAKWRLPRELSNKLIDQADWLARAKKYGVVS*
Ga0062593_1000941251	3300004114	Soil	GVDMAFYHIDDIGIGAMYIALKELKAKGGPFDEAAKMRLPRDIAAKVIDQADWLARAKRYGVIG*
Ga0062592_1003433442	3300004480	Soil	KGVDMAFYHIDDIGIGAMYIALKELKAKGGPFDEAAKMRLPRDIAAKVIDQADWLARAKRYGVIG*
Ga0065705_103700421	3300005294	Switchgrass Rhizosphere	LMIGSSGPASDWHAKGVDMAFYHIDNIGIGAMYMALKEIKATGKFTETAKMQLPRDIAAKVINQQEWLARAKKYGVV*
Ga0070690_1016993981	3300005330	Switchgrass Rhizosphere	YHIDDIGIGAMYLALKEMKAKGGPFDEAAKWRLPRELSAKLIEQDTWMARAKKYGVVP*
Ga0070670_1021372612	3300005331	Switchgrass Rhizosphere	PATEWHSKGVDMAYYHIDTIGVGAMYMALKEIKATGKFTEAAKMNLPRDISARAIRQQDWLARAKKYGVVD*
Ga0070677_102760652	3300005333	Miscanthus Rhizosphere	SSGLASEWHAKGVDMAFYHIDDIGIGAMYIALKEMKAKGGPFDDAAKWRLPRDLSARLIDQETWLARAKKYGVVRS*
Ga0070666_103362691	3300005335	Switchgrass Rhizosphere	ALKKPLMIGSSGAAAEWHGKGVDMAFYHIDDIGIGAMYIALKEMKAKGGPFDEAAKWRLPRDLSAKLINQAEWLARAQKYGVVK*
Ga0070666_110971012	3300005335	Switchgrass Rhizosphere	VDMAFYHIDDIGIGAMYIALKELKAKNGPFDEAAKMRLPRDVAAKVIDQADWLARAKRYGVIT*
Ga0070689_1021282821	3300005340	Switchgrass Rhizosphere	IGIGAMYMALKEIKATGKFTETAKMQLPRDIAAKVIDQQEWLARAKKYGVV*
Ga0070669_1015981201	3300005353	Switchgrass Rhizosphere	WHAKGVDMAFYHIDDIGIGAMYIALKELKAKGGPFDEAAKMRLPRDVAAKVIDQADWLARAKKYGVVN*
Ga0070675_1005319331	3300005354	Miscanthus Rhizosphere	YHIDDIGIGAMYIALKELKAKGGPFDEAAKMRLPRDVAAKVIDQADWLARAKKYGVVN*
Ga0070674_1002369983	3300005356	Miscanthus Rhizosphere	DMAFYHIDDIGIGAMYIALKEMKAKGGPFDEGARLRLPRDVSARLIDQAGWLARAQKYGVIK*
Ga0070674_1021357922	3300005356	Miscanthus Rhizosphere	IGIGAMYLALKEMKAKGGPFEDAAKWRLPREVSAKLIEQDTWLARAKKYGVVP*
Ga0070673_1005735812	3300005364	Switchgrass Rhizosphere	EWHAKGVDMAFYHIDDIGIGAMYVALKEMKAKGGPFDDAAKWRLPRDLSARLIDQEAWLARAKKYGVVRS*
Ga0070673_1007086372	3300005364	Switchgrass Rhizosphere	EWHAKGVDMAFYHIDDIGIGAMYLALKEMKAKGGPFDEAAKWRLPRELSAKLIEQDTWMARAKKYGVVP*
Ga0070659_1020279242	3300005366	Corn Rhizosphere	DMAFYHIDDIGIGAMYIALKELKAKGGPFDEAAKMRLPRDVAAKVIDQADWLARAKKYGVVN*
Ga0070700_1004230772	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	DMAFYHIDDIGIGAMYIALKEMKAKGGPFEEAAKMRLPRDIAAKVIDQADWLARAKRYGVIS*
Ga0070700_1011409731	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	FYHIDDIGIGAMYLALKEMKAKGGPFEDAAKWRLPREVSAKLIEQDTWLARAKKYGVVP*
Ga0070700_1018369992	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	AKGVDMAFYHIDDIGIGAMYIALKELKAKGGPFDEAAKMRLPRDIAAKVIDQADWLARAKRYGVIG*
Ga0070678_1001002901	3300005456	Miscanthus Rhizosphere	DDIGIGAMYIALKEMKAKGGPFDDAAKWRLPRDLSARLIEQETWLARAKKYGVVRP*
Ga0070678_1009122033	3300005456	Miscanthus Rhizosphere	DIGIGAMYIALKEMKAKGGPFDEAARLRLPRDVSARLIDQAGWLARAQKYGVIK*
Ga0070678_1021950531	3300005456	Miscanthus Rhizosphere	IGAMYIALKEMKAKGGPFEEAAKMRLPRDIAAKVIDQADWLARAKRYGVIS*
Ga0070685_105326901	3300005466	Switchgrass Rhizosphere	KGVDMAFYHIDDIGIGAMYVALKEMKAKGGPFDDAAKWRLPRDLSARLIDQEAWLARAKKYGVVRS*
Ga0070707_1008284522	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	KGVDMAFYHIDTIGIGAMYMALKEIKATGKFTEAAKLQLPRDVAAKVIDQAEWLARAKKYGVV*
Ga0070672_1001140791	3300005543	Miscanthus Rhizosphere	MIGSSGLAAEWHAKGVEMAFYHIDDIGIGAMYLALKEMKAKGGPFDDAARWRLPRDVSARLIDQDVWLARARKYGVVQS*
Ga0068854_1011372512	3300005578	Corn Rhizosphere	IDNIGIGAMYMALKEIKATGKFTETAKMQLPRDIAAKVINQQEWLARAKKYGVV*
Ga0070702_1010072181	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MAFYHIDDIGIGAMYIALKELKAKGGPFDEAAKMRLPRDVAAKVIDQADWLARAKRYGVIT*
Ga0068852_1024965321	3300005616	Corn Rhizosphere	ALRKPLMIGSSGLASEWHAKGVDMAFYHIDDIGIGAMYIALKEMKAKGGPFDDAAKWRLPRDLSARLIDQETWLARAKKYGVVRS*
Ga0068852_1026961092	3300005616	Corn Rhizosphere	FYHIDDIGIGAMYIALKEMKAKGGPFDEAAKWRLPRDLSSKLIEQETWVTRAKKYGVVQP
Ga0068859_1027362272	3300005617	Switchgrass Rhizosphere	GVDMAFYHIDDIGIGAMYLALKEMKAKGGPFDDAAKWRLPREVSAKLINQGDWLARAQKYGVVK*
Ga0068859_1029584141	3300005617	Switchgrass Rhizosphere	AKGVDMAFYHIDDIGIGAMYIALKEMKAKGGPFDEAARLRLPRDVSAKLIDQAEWLARAKKYGVIK*
Ga0068864_1002642871	3300005618	Switchgrass Rhizosphere	LMIGSSGLASEWHAKGVDMAFYHIDDIGIGAMYLALKEMKAKGGPFDEAAKWRLPRDLSARLIDQETWLARAKKYGVVRS*
Ga0068864_1015342111	3300005618	Switchgrass Rhizosphere	KKPLMIGSSGLASEWHAKGVDMAFYHIDDIGIGAMYIALKEMKAKGGPFDDAAKWRLPRDLSAKLIEQETWLTRAKKYGVVR*
Ga0068866_108158322	3300005718	Miscanthus Rhizosphere	VDMAFYHIDDIGIGAMYLALKEMKAKGGPFDEAAKWRLPRELSAKLIEQDTWMARAKKYGVVP*
Ga0068863_1013054091	3300005841	Switchgrass Rhizosphere	PLMIGSSGLASEWHAKGVDMAFYHIDDIGIGAMYIALKEMKAKGGPFDDAAKWRLPRDLSARLIDQETWLARAKKYGVVRP*
Ga0068863_1021844161	3300005841	Switchgrass Rhizosphere	KKPLMIGSSGLASEWHAKGVDMAFYHIDDIGIGAMYLALKEMKARGGPFDEAAKWRLPRDLSARLIDQETWLARAKKYGVVRS*
Ga0068862_1020162281	3300005844	Switchgrass Rhizosphere	IDDIGIGAMYIALKELKAKGGPFDEAAKMRLPRDVAAKVIDQADWLARAKRYGVIN*
Ga0066652_1008557061	3300006046	Soil	WHAKGVDMAFYHIDDIGIGAMYLALKEMKAKGGPFEDAAKWRLPRDMSARLIEQDTWLARAKKYGVVRP*
Ga0074062_129616344	3300006606	Soil	KPLMIGSSGPAAEWHAKGVDMAFYHIDDIGIGAMYIALKEMKAKGGPFDEAAKLRLPRDVSARLIDQADWLARARKYGVIK*
Ga0068865_1008011452	3300006881	Miscanthus Rhizosphere	EWHAKGVDMAFYHIDDIGIGAMYIALKEMKAKGGPFDEAAKWRLPRDLSSKLIEQETWVTRAKKYGVVQP*
Ga0074063_139900863	3300006953	Soil	KGVDMAFYHIDDIGIGAMYIALKEMKAKGGPFDEAARWRLPRDVSARLIDQAEWLSRAQKYGVIK*
Ga0075419_105448131	3300006969	Populus Rhizosphere	EVMAYYHIDTIGVGAMYMALKEIKATGKFTEAAKMNLPRDISSQAIRQPDWLARAKKYGVIG*
Ga0105247_105220132	3300009101	Switchgrass Rhizosphere	FYHIDDIGIGAMYIALKELKAKGGPFDEAAKWRLPRDVAARVIDQPGWVDKAKRYGVIT*
Ga0105243_112728611	3300009148	Miscanthus Rhizosphere	KGVDMAFYHIDDIGIGAMYIALKEMKAKGGLFDEAAKMRLPRDVATKVIDQADWLARAKKYGVVN*
Ga0105242_119312531	3300009176	Miscanthus Rhizosphere	DIGIGAMYIALKEMKAKGGSFDEAAKWRLPRELSAKLINQADWLSRAQKYGVVK*
Ga0105248_129310472	3300009177	Switchgrass Rhizosphere	VDMAFYHIDDIGIGAMYIALKEMKAKGGPFDEAAKWRLPRELSAKLINQAEWLSRAQKYGVVK*
Ga0105249_121140601	3300009553	Switchgrass Rhizosphere	LASEWHAKGVDMAFYHIDDIGIGAMYIALKEMKAKGGPFDDAAKWRLPRDLSARLIDQETWLARAKKYGVVRS*
Ga0105340_12931692	3300009610	Soil	GVDMAYYHIDTIGVGAMYMALKEIKATGKFTEAAKMNLPRDISARAIRQQDWLARAKKYGVVD*
Ga0126319_10171482	3300010147	Soil	EWHAKGVDMAFYHIDDIGIGAMYIALKEMKARGGPFDDAAKWRLPRDLSARLIDQETWLARAKKYGVVRP*
Ga0134124_128703861	3300010397	Terrestrial Soil	VDMAFYHIDDIGIGAMYLALKEMKAKGGPFEEAAKWRLPRELSAKLIEQDTWMARAKKYGVVP*
Ga0134127_107778752	3300010399	Terrestrial Soil	DMAFYHIDDIGIGAMYIALKEMKAKGGPFDDAAKWRLPRDLAARLIDQETWLARAKKYGVVRS*
Ga0134123_132074542	3300010403	Terrestrial Soil	DIGIGAMYIALKELKAKGGPFDEAAKWRLPRDVAARVIDQPGWVDKAKRYGVIT*
Ga0150985_1142501941	3300012212	Avena Fatua Rhizosphere	TGLAAEWHAKGVDMAFYHIDDIGIGAMYIALKEMKAKGGPFEEAAKWRLPRELSNKLIDQADWLARAKKYGVVS*
Ga0150985_1193186591	3300012212	Avena Fatua Rhizosphere	SGPAAEWHARGVDMAFYHIDDIGIGAMYIALKEMKAKGGPFDDAAKWRLPRDVSARLIDQAEWLSRARKYGVVK*
Ga0150984_1168917001	3300012469	Avena Fatua Rhizosphere	KQTLKKPLMIGSTGLAAEWHAKGVDMAFYHIDDIGIGAMYIALKEMKAKGGPFEEAAKWRLPRELSNKLIDQADWLARAKKYSVVS*
Ga0150984_1169014701	3300012469	Avena Fatua Rhizosphere	KQTLKKPLMIGSTGLAAEWHAKGVDMAFYHIDDIGIGAMYIALKEMKAKGGPFEEAAKWRLPRELSNKLIDQADWLARAKKYGVVS*
Ga0157305_100205832	3300012891	Soil	MAFYHIDDIGIGAMYIALKELKAKGGPFDEAAKMRLPRDVAAKVIDQADWLARAKRYGVIN*
Ga0157378_112804721	3300013297	Miscanthus Rhizosphere	FYHIDDIGIGAMYIALKEMKAKGGSFDEAAKWRLPRDVSARLINQAEWLSRAQKYGVVK*
Ga0157378_131366761	3300013297	Miscanthus Rhizosphere	AAEWHAKGVDMAFYHIDDIGIGAMYIALKELKAKGGPFDEAAKWRLPRDVAARVIDQPGWVDKAKRYGVIT*
Ga0157375_110937261	3300013308	Miscanthus Rhizosphere	IGAMYLALKEMKAKGGPFDDAARWRLPRDVSARLIDQDVWLARARKYGVVQS*
Ga0157380_102222942	3300014326	Switchgrass Rhizosphere	MIGSSGLASEWHAKGVDMAFFHIDDIGIGAMYIALKEMKAKGGPFEEAAKMRLPRDIAAKVIDQADWLARAKRYGVIS*
Ga0157380_103030601	3300014326	Switchgrass Rhizosphere	HAKGVDMAFYHIDDIGIGAMYVALKEMKAKGGPFDDAAKWRLPRDLSARLIDQEAWLARAKKYGVVRS*
Ga0157380_123443211	3300014326	Switchgrass Rhizosphere	KPLMIGSSGPAAEWHAKGVDMAFYHIDDIGIGAMYIALKEMKAKGGSFDEAARWRLPRNVSARLINQAEWLARAQKYGVTK*
Ga0157377_110598392	3300014745	Miscanthus Rhizosphere	GLASEWHAKGVDMAFYHIDDIGIGAMYLALKEMKARGGPFDEAAKWRLPRDLSARLIDQETWLARAKKYGVVRS*
Ga0157377_116931582	3300014745	Miscanthus Rhizosphere	MIGSSGLASEWHAKGVDMAFYHIDDIGIGAMYIALKEMKAKGGPFDDAAKWRLPRDLSARLIDQEAWLARAKKYGVVRS*
Ga0157376_104150541	3300014969	Miscanthus Rhizosphere	PAAEWHAKGVDMAFYHIDDIGIGAMYIALKEMKAKGGPFDEAAKLRLPRDVSARLIDQAEWLSRARKYGVIK*
Ga0173480_109390631	3300015200	Soil	GPATEWHAKGVDMAFYHIDDIGIGAMYIALKELKAKGGPFDEAAKMRLPRDVAAKVIDQADWLARAKKYGVVN*
Ga0132258_105071864	3300015371	Arabidopsis Rhizosphere	RAAEWHAKGVDMAFYHIDDIGIGAMYLALKEMKAKGGPFDEAAKWRLPRELSAKLIEQDTWMARAKKYGVVP*
Ga0132258_109579161	3300015371	Arabidopsis Rhizosphere	PAAEWHAKGVDMAFYHIDNIGIGAMYMALKEIKATGKFTEAAKMQLPRDIAAKVINQQEWLARAKKYGVV*
Ga0132257_1024385631	3300015373	Arabidopsis Rhizosphere	GPAAEWHAKGVDMAFYHIDDIGIGAMYIALKELKSKGGPFDEAAKWRLPRDVAARVIDQPGWVDKAKRYGVIT*
Ga0132255_1003690181	3300015374	Arabidopsis Rhizosphere	IGIGAMYIALKEMKAKGGPFEEAAKMRLPRDIAAKVIDQADWLARAKRYGVIS*
Ga0184625_102314132	3300018081	Groundwater Sediment	SGPATEWHAKGVDMAFYHIDDIGIGAIYIALKELKAKGGPFEEAAKMRLPRDIAAKVIDQADWLARAKRYGVIS
Ga0184639_106522941	3300018082	Groundwater Sediment	GPADEWHSKGVDMAYYHIDTIGVGAMYMALKELKATGKFTEAAKLNLPREIASQAIRQQDWLARAKKYGVIA
Ga0190274_103150382	3300018476	Soil	ATEWHSKGVDMAYYHIDTIGVGAMYMALKEIKATGKFTEAAKMNLPRDISARAIRQQDWLARAKKYGVVD
Ga0190274_117661742	3300018476	Soil	YHIDDIGIGAMYLALKEMKAKGGPFEDAAKWRLPREVSTKLIEQDTWLARAKKYGVVP
Ga0190271_109780932	3300018481	Soil	MAFYHIDDIGIGAMYLALKEMKAKGGPFEDAAKWRLPREVSTKLIEQDTWLARAKKYGVV
Ga0210380_100237361	3300021082	Groundwater Sediment	MIGSSGPATEWHAKGVDMAFYHIDDIGIGAMYIALKELKAKGGPFDEAAKMRLPRDVAAKVIDQADWLARAKKYGVVN
Ga0210380_102738211	3300021082	Groundwater Sediment	GPATEWHAKGVDMAFYHIDDIGIGAMYIALKELKAKGGPFDEAAKMRLPRDVAAKVIDQADWLARAKKYGVIN
Ga0222622_114135012	3300022756	Groundwater Sediment	LKKPLMIGSSGPASEWHAKGVDMAFYHIDNIGIGAMYMALKEIKATGKFTEAAKMQLPRDIAAKVIDQADWLARAKKYGVV
Ga0247751_10990402	3300023069	Soil	IDDIGIGAMYIALKELKAKGGPFDEAAKMRLPRDVAAKVIDQADWLARAKRYGVIN
Ga0210076_11442822	3300025567	Natural And Restored Wetlands	MSDDDRSRRFDDIGIGAMDTTLKELKAKDGPFDEAAKVRLPRDVAAKAIDQADWLARAKKYGVIS
Ga0207642_107995571	3300025899	Miscanthus Rhizosphere	HIDDIGIGAMYIALKEMKAKGGPFEEAAKMRLPRDIAAKVIDQADWLARAKRYGVIS
Ga0207645_106853132	3300025907	Miscanthus Rhizosphere	KKPLMIGSSGPAAEWHAKGVDMAFYHIDDIGIGAMYIALKELKAKGGPFDEAAKWRLPRDVAARVIDQPGWVDKAKRYGVIT
Ga0207645_107264363	3300025907	Miscanthus Rhizosphere	AEWHAKGVDMAFYHIDDIGIGAMYIALKEMKAKGGPFDEAARLRLPRDVSARLIDQAGWLARAQKYGVIK
Ga0207681_109060281	3300025923	Switchgrass Rhizosphere	AFYHIDDIGIGAMYIALKELKAKGGPFDEAAKMRLPRDVAAKVIDQADWLARAKKYGVVN
Ga0207681_115538531	3300025923	Switchgrass Rhizosphere	IGSSGLASEWHAKGVDMAFYHIDDIGIGAMYVALKEMKAKGGPFDDAAKWRLPRDLSARLIDQEAWLARAKKYGVVRS
Ga0207659_115486992	3300025926	Miscanthus Rhizosphere	MAFYHIDDIGIGAMYIALKELKAKGGPFDEAAKMRLPRDVAAKVIDQADWLARAKKYGVV
Ga0207701_101070723	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	SSARAADWHAKGVDMAFYHIDDIGIGAMYLALKEMKAKGGPFEDAAKWRLPREVSAKLIEQDTWLARAKKYGVVP
Ga0207701_103328901	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	WHSKGVDMAYYHIDTIGVGAMYMALKELKATGKFTEAAKMNLPRDISAQAIRQQDWLARAKKYGVIA
Ga0207670_103792592	3300025936	Switchgrass Rhizosphere	ALEKPLMIGSSGLAAEWHAKGVDMAFYHIDDIGIGAMYIALKEMKAKGGPFDEAAKWRLPRDLSARLIDQETWLARAKKYGVVRS
Ga0207670_108744601	3300025936	Switchgrass Rhizosphere	EWHAKGVDMAFYHIDDIGIGAMYIALKEMKAKGGPFDEAARLRLPRDVSARLIDQAGWLARAQKYGVIK
Ga0207669_114115571	3300025937	Miscanthus Rhizosphere	HIDDIGIGAMYLALKEMKAKGGPFEDAAKWRLPREVSAKLIEQDTWLARAKKYGVVP
Ga0207704_100585462	3300025938	Miscanthus Rhizosphere	FYHIDDIGIGAMYIALKELKAKNGPFDEAAKMRLPRDVAAKVIDQADWLARAKRYGVIT
Ga0207691_108397701	3300025940	Miscanthus Rhizosphere	MIGSSGLAAEWHAKGVEMAFYHIDDIGIGAMYLALKEMKAKGGPFDDAARWRLPRDVSARLIDQDVWLARARKYGVVQS
Ga0207711_104479771	3300025941	Switchgrass Rhizosphere	MIGSSGLAAEWHAKGVEMAFYHIDDIGIGAMYLALKEMKAKGGPFDDAARWRLPRDVFARLIDQDVWLARARKYGVVQS
Ga0207651_120000442	3300025960	Switchgrass Rhizosphere	IGSSGLAAEWHAKGVEMAFYHIDDIGIGAMYLALKEMKAKGGPFDDAARWRLPRDVSARLIDQDVWLARARKYGVVQS
Ga0207668_101892651	3300025972	Switchgrass Rhizosphere	DDIGIGAMYIALKEMKAKGGPFDDAAKWRLPRDLSARLIDQETWLARAKKYGVVRS
Ga0207708_112660852	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	YHIDDIGIGAMYLALKEMKAKGGPFEDAAKWRLPREVSAKLIEQDTWLARAKKYGVVP
Ga0207676_104851571	3300026095	Switchgrass Rhizosphere	PLMIGSSGLASEWHAKGVDMAFYHIDDIGIGAMYLALKEMKAKGGPFDEAAKWRLPRDLSARLIDQETWLARAKKYGVVRS
Ga0207676_109495271	3300026095	Switchgrass Rhizosphere	PAAEWHAKGVDMAFYHIEDIGIGAMYIALKELKAKGGPFDEAAKWRLPRDVAARVIDQPGWVDKAKRYGVIT
Ga0207675_1009416672	3300026118	Switchgrass Rhizosphere	DNIGIGAMYMALKEIKATGKFTETAKMQLPRDIAAKVINQQEWLARAKKYGVV
Ga0207683_109393083	3300026121	Miscanthus Rhizosphere	DIGIGAMYIALKEMKAKGGPFDEAARLRLPRDVSARLIDQAGWLARAQKYGVIK
Ga0268265_102000351	3300028380	Switchgrass Rhizosphere	PLMIGSSARAADWHAKGVDMAFYHIDDIGIGAMYLALKEMKAKGGPFEDAAKWRLPREVSAKLIEQDTWLARAKKYGVVP
Ga0310888_103873261	3300031538	Soil	MAYYHIDSIGVGAMYMALKELKATGKFTEAAKMNLPRDIMSQAIRQQDWLSRAKKYGVID
Ga0310888_104446481	3300031538	Soil	WHAKGVDMAFYHIDDIGIGAMYIALKELKAKGGPFDEAAKMRLPRDVAAKVIDQADWLARAKKYGVVN
Ga0310888_108101222	3300031538	Soil	VDMAFYHIDDIGIGAMYIALKELKAKGGPFDEAAKMRLPRDVAAKVIDQADWLARAKRYGVIN
Ga0310893_105254171	3300031892	Soil	AKGVDMAFYHIDDIGIGAMYIALKELKAKGGPFDEAAKMRLPRDVAAKVIDQADWLARAKRYGVIN
Ga0310900_100401522	3300031908	Soil	AYYHIDSIGVGAMYLALKELKATGKFTEAAKMNLPRDIASRAVRQQDWLARAKKYGVVE
Ga0310901_100267412	3300031940	Soil	GIGAMYIALKELKAKGGPFDEAAKMRLPRDIAAKVIDQADWLARAKRYGVIG
Ga0307416_1009677772	3300032002	Rhizosphere	PLMIGSSGPATEWHAKGVDMAFYHIDDIGIGAMYIALKELKAKGGPFDEAAKWRLPRDVSTKVIDQADWLGRARRYGVVS
Ga0310902_106831862	3300032012	Soil	GIGAMYIALKEMKAKGGPFDDAAKWRLPRDLSARLIEQETWLARAKKYGVGRP
Ga0310890_116087551	3300032075	Soil	GIGAMYIALKEMKAKGGPFEEAAKMRLPRDIAAKVIDQADWLARAKRYGVIS
Ga0310895_100211231	3300032122	Soil	GSSGPATEWHAKGVDMAFYHIDDIGIGAMYIALKELKAKGGPFDEAAKMRLPRDVAAKVIDQADWLARAKRYGVIN
Ga0315910_115410501	3300032144	Soil	DMAFYHIDDIGIGAMYIALKEMKAKGGPFEEAAKMRLPRDVATKVIDQADWLARAKRYGVIN
Ga0315912_103441973	3300032157	Soil	VDMAFYHIDDIGIGAMYIALKEMKAKGGPFDDAAKWRLPRDVQAKLIEQNEWLARAKKYGVVR
Ga0307470_108707722	3300032174	Hardwood Forest Soil	MIGSSARAAEWHAKGVDMAFYHIDDIGIGAMYIALKEMKAKGGPFDEAAKWRLPRELSAKLINQAEWLSRA
Ga0364927_0018605_37_219	3300034148	Sediment	MAYYHIDTIGVGAMYMALKELKATGKFTEAAKMNLPREIASQVIRQQDWLARAKKYGVIA
Ga0364927_0051052_14_199	3300034148	Sediment	MAFYHIDDIGIGAMYIALKELKAKGGPFDEAAKMRLPRDVAAKVIDQADWLARAKKYGVI
Ga0364927_0160155_45_230	3300034148	Sediment	MAFYHIDDIGIGAMYIALKEMKAKGGLFDEAAKMRLPRDVATKVIDQADWLARAKRYGVI
Ga0314786_156714_320_535	3300034664	Soil	ATEWHAKGVDMAFYHIDDIGIGAMYIALKELKAKGGPFDEAAKMRLPRDIAAKVIDQADWLARAKKYGVVT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F068788

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences