Metagenome / Metatranscriptome Family F068803

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F068803
Family Type	Metagenome / Metatranscriptome
Number of Sequences	124
Average Sequence Length	60 residues
Representative Sequence	MKTAQPPSVTIRQIEFELEKAEHGMALPYDAERVGQLRKMLVEARKRKLSAGLKARREQGPR
Number of Associated Samples	91
Number of Associated Scaffolds	124

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	81.30 %
% of genes near scaffold ends (potentially truncated)	23.39 %
% of genes from short scaffolds (< 2000 bps)	95.97 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.58

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (72.581 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (34.677 % of family members)
Environment Ontology (ENVO)	Unclassified (33.871 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (41.935 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 45.56% β-sheet: 0.00% Coil/Unstructured: 54.44%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.58
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.58
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 124 Family Scaffolds
PF13467	RHH_4	4.03
PF01068	DNA_ligase_A_M	2.42
PF07369	DUF1488	1.61
PF06823	DUF1236	0.81
PF13565	HTH_32	0.81
PF00005	ABC_tran	0.81
PF07045	DUF1330	0.81
PF00872	Transposase_mut	0.81
PF13453	zf-TFIIB	0.81
PF02357	NusG	0.81

COG ID	Name	Functional Category	% Frequency in 124 Family Scaffolds
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	2.42
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	2.42
COG0250	Transcription termination/antitermination protein NusG	Transcription [K]	0.81
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.81
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.58 %
All Organisms	root	All Organisms	27.42 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.58 %
cellular organisms	root	All Organisms → cellular organisms	27.42 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.58 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	27.42 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.58 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	24.19 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.58 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	20.16 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.58 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9.68 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	8.06 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.58 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6.45 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.65 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2.42 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.81 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.58 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5.65 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.65 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2.42 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.81 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.58 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.65 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	4.03 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2.42 %
unclassified Mesorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium	0.81 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.58 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.65 %
Bradyrhizobium sp. C-145	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. C-145	4.03 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2.42 %
Mesorhizobium sp. ORS 3359	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. ORS 3359	0.81 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459013\|GO6OHWN01A8NOP	Not Available	500	Open in IMG/M
2189573001\|GZR05M102G905G	Not Available	500	Open in IMG/M
3300000789\|JGI1027J11758_13033908	Not Available	838	Open in IMG/M
3300000956\|JGI10216J12902_107544080	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1723	Open in IMG/M
3300002568\|C688J35102_119227020	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300004081\|Ga0063454_100433536	Not Available	895	Open in IMG/M
3300004081\|Ga0063454_102085973	Not Available	503	Open in IMG/M
3300004153\|Ga0063455_100338374	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	850	Open in IMG/M
3300004153\|Ga0063455_101360874	Not Available	545	Open in IMG/M
3300005159\|Ga0066808_1040141	Not Available	508	Open in IMG/M
3300005162\|Ga0066814_10125963	Not Available	500	Open in IMG/M
3300005164\|Ga0066815_10016526	Not Available	986	Open in IMG/M
3300005165\|Ga0066869_10074317	Not Available	641	Open in IMG/M
3300005169\|Ga0066810_10090480	Not Available	663	Open in IMG/M
3300005330\|Ga0070690_101217488	Not Available	601	Open in IMG/M
3300005356\|Ga0070674_100439213	Not Available	1075	Open in IMG/M
3300005356\|Ga0070674_100822769	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	803	Open in IMG/M
3300005457\|Ga0070662_100293543	Not Available	1318	Open in IMG/M
3300005459\|Ga0068867_101765770	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. C-145	581	Open in IMG/M
3300005547\|Ga0070693_100869492	Not Available	673	Open in IMG/M
3300005718\|Ga0068866_10996642	Not Available	595	Open in IMG/M
3300005719\|Ga0068861_100682430	Not Available	952	Open in IMG/M
3300005764\|Ga0066903_101788164	Not Available	1173	Open in IMG/M
3300006047\|Ga0075024_100866154	Not Available	511	Open in IMG/M
3300006574\|Ga0074056_11434238	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	505	Open in IMG/M
3300006581\|Ga0074048_11726609	Not Available	544	Open in IMG/M
3300006953\|Ga0074063_14090991	Not Available	590	Open in IMG/M
3300009143\|Ga0099792_10044288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2139	Open in IMG/M
3300009143\|Ga0099792_10434304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	810	Open in IMG/M
3300009176\|Ga0105242_10741330	Not Available	966	Open in IMG/M
3300010147\|Ga0126319_1399162	Not Available	742	Open in IMG/M
3300010159\|Ga0099796_10192037	Not Available	825	Open in IMG/M
3300010358\|Ga0126370_12051027	Not Available	560	Open in IMG/M
3300010366\|Ga0126379_11503137	Not Available	779	Open in IMG/M
3300010397\|Ga0134124_11267421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. C-145	759	Open in IMG/M
3300010400\|Ga0134122_11726305	Not Available	655	Open in IMG/M
3300011119\|Ga0105246_11445217	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. C-145	643	Open in IMG/M
3300011119\|Ga0105246_12145460	Not Available	542	Open in IMG/M
3300012203\|Ga0137399_10598712	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	927	Open in IMG/M
3300012212\|Ga0150985_111022381	Not Available	646	Open in IMG/M
3300012212\|Ga0150985_111411288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1894	Open in IMG/M
3300012212\|Ga0150985_115509933	Not Available	538	Open in IMG/M
3300012212\|Ga0150985_121034536	Not Available	1092	Open in IMG/M
3300012212\|Ga0150985_122750367	Not Available	891	Open in IMG/M
3300012469\|Ga0150984_102569246	Not Available	552	Open in IMG/M
3300012469\|Ga0150984_107252022	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	725	Open in IMG/M
3300012469\|Ga0150984_113852644	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. C-145	2068	Open in IMG/M
3300012911\|Ga0157301_10375907	Not Available	543	Open in IMG/M
3300012924\|Ga0137413_10151736	Not Available	1514	Open in IMG/M
3300012958\|Ga0164299_10858202	Not Available	654	Open in IMG/M
3300012958\|Ga0164299_11135597	Not Available	586	Open in IMG/M
3300012960\|Ga0164301_11561162	Not Available	546	Open in IMG/M
3300012960\|Ga0164301_11651563	Not Available	533	Open in IMG/M
3300012985\|Ga0164308_11016267	Not Available	738	Open in IMG/M
3300012985\|Ga0164308_11941353	Not Available	549	Open in IMG/M
3300012985\|Ga0164308_12207055	Not Available	513	Open in IMG/M
3300012987\|Ga0164307_10861471	Not Available	725	Open in IMG/M
3300012988\|Ga0164306_10441100	Not Available	988	Open in IMG/M
3300012989\|Ga0164305_10312527	Not Available	1166	Open in IMG/M
3300013297\|Ga0157378_10358895	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. C-145	1426	Open in IMG/M
3300014326\|Ga0157380_11550244	Not Available	717	Open in IMG/M
3300015242\|Ga0137412_10129400	Not Available	2043	Open in IMG/M
3300015242\|Ga0137412_11170693	Not Available	541	Open in IMG/M
3300015371\|Ga0132258_11867840	Not Available	1513	Open in IMG/M
3300015371\|Ga0132258_12254150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1366	Open in IMG/M
3300015371\|Ga0132258_13059923	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1157	Open in IMG/M
3300015371\|Ga0132258_13731878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1039	Open in IMG/M
3300015373\|Ga0132257_102147486	Not Available	722	Open in IMG/M
3300015374\|Ga0132255_102074444	Not Available	866	Open in IMG/M
3300015374\|Ga0132255_103007484	Not Available	720	Open in IMG/M
3300015374\|Ga0132255_103692160	Not Available	651	Open in IMG/M
3300018028\|Ga0184608_10439229	Not Available	563	Open in IMG/M
3300018067\|Ga0184611_1143010	Not Available	845	Open in IMG/M
3300018072\|Ga0184635_10139442	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	967	Open in IMG/M
3300018072\|Ga0184635_10387316	All Organisms → cellular organisms → Bacteria → Proteobacteria	531	Open in IMG/M
3300018073\|Ga0184624_10198151	Not Available	895	Open in IMG/M
3300018073\|Ga0184624_10354023	Not Available	657	Open in IMG/M
3300018077\|Ga0184633_10311255	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	801	Open in IMG/M
3300018469\|Ga0190270_11382088	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	750	Open in IMG/M
3300018469\|Ga0190270_12025794	Not Available	634	Open in IMG/M
3300018469\|Ga0190270_12994403	Not Available	534	Open in IMG/M
3300018476\|Ga0190274_10229139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1664	Open in IMG/M
3300018481\|Ga0190271_11054832	Not Available	937	Open in IMG/M
3300018481\|Ga0190271_11833991	Not Available	718	Open in IMG/M
3300019876\|Ga0193703_1027225	Not Available	885	Open in IMG/M
3300020002\|Ga0193730_1019875	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1935	Open in IMG/M
3300020002\|Ga0193730_1168047	Not Available	564	Open in IMG/M
3300021363\|Ga0193699_10288747	Not Available	684	Open in IMG/M
3300022534\|Ga0224452_1081707	Not Available	980	Open in IMG/M
3300022756\|Ga0222622_10646718	All Organisms → cellular organisms → Bacteria	766	Open in IMG/M
3300025934\|Ga0207686_10053707	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	2520	Open in IMG/M
3300025935\|Ga0207709_10399735	Not Available	1050	Open in IMG/M
3300025940\|Ga0207691_11574377	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300025972\|Ga0207668_11287770	Not Available	658	Open in IMG/M
3300026075\|Ga0207708_10991520	Not Available	730	Open in IMG/M
3300026118\|Ga0207675_100523021	Not Available	1183	Open in IMG/M
3300027903\|Ga0209488_11237179	Not Available	501	Open in IMG/M
3300028536\|Ga0137415_10375397	Not Available	1226	Open in IMG/M
3300028711\|Ga0307293_10271957	Not Available	538	Open in IMG/M
3300028715\|Ga0307313_10166721	Not Available	681	Open in IMG/M
3300028768\|Ga0307280_10306186	Not Available	580	Open in IMG/M
3300028778\|Ga0307288_10390434	Not Available	565	Open in IMG/M
3300028787\|Ga0307323_10178667	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	767	Open in IMG/M
3300028793\|Ga0307299_10227030	Not Available	702	Open in IMG/M
3300028793\|Ga0307299_10387167	Not Available	524	Open in IMG/M
3300028799\|Ga0307284_10206810	Not Available	772	Open in IMG/M
3300028803\|Ga0307281_10151793	All Organisms → cellular organisms → Bacteria → Proteobacteria	813	Open in IMG/M
3300028819\|Ga0307296_10243495	Not Available	978	Open in IMG/M
3300028819\|Ga0307296_10526337	Not Available	647	Open in IMG/M
3300028819\|Ga0307296_10633835	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	585	Open in IMG/M
3300028819\|Ga0307296_10793616	Not Available	516	Open in IMG/M
3300028824\|Ga0307310_10735903	Not Available	507	Open in IMG/M
3300028876\|Ga0307286_10098957	Not Available	1022	Open in IMG/M
3300028878\|Ga0307278_10186738	Not Available	925	Open in IMG/M
3300028881\|Ga0307277_10338325	Not Available	670	Open in IMG/M
3300030902\|Ga0308202_1085658	Not Available	632	Open in IMG/M
3300031114\|Ga0308187_10305341	Not Available	598	Open in IMG/M
3300031170\|Ga0307498_10119550	All Organisms → cellular organisms → Bacteria → Proteobacteria	837	Open in IMG/M
3300031226\|Ga0307497_10218068	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. ORS 3359	836	Open in IMG/M
3300031226\|Ga0307497_10496497	Not Available	601	Open in IMG/M
3300031231\|Ga0170824_122638313	Not Available	1049	Open in IMG/M
3300031231\|Ga0170824_126075291	All Organisms → cellular organisms → Bacteria → Proteobacteria	532	Open in IMG/M
3300031469\|Ga0170819_10489219	All Organisms → cellular organisms → Bacteria → Proteobacteria	759	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	74.19%
Host-Associated	Host-Associated	25.81%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	65.32%
Plants	Host-Associated → Plants	25.81%
Aquatic	Environmental → Aquatic	8.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	65.32%
Rhizoplane	Host-Associated → Plants → Rhizoplane	13.71%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.10%
Sediment	Environmental → Aquatic → Sediment	8.06%
Freshwater	Environmental → Aquatic → Freshwater	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	58.06%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	10.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.06%
Loam	Environmental → Terrestrial → Soil → Loam	7.26%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.65%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.23%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	53.23%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	10.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.06%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.65%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	4.03%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.23%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.42%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.42%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.42%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.81%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	34.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.26%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.26%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	6.45%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.65%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	4.03%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	4.03%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.03%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.42%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.42%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	2.42%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.61%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.61%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.61%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.61%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.61%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.61%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.81%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.81%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.81%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.81%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.81%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459013	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis soil at the rocks surface 0-21cm	Environmental	Open in IMG/M
2189573001	Grass soil microbial communities from Rothamsted Park, UK - FD2 (NaCl 300g/L 5ml)	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300005159	Soil and rhizosphere microbial communities from Laval, Canada - mgLPB	Environmental	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005163	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB	Environmental	Open in IMG/M
3300005164	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC	Environmental	Open in IMG/M
3300005165	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC	Environmental	Open in IMG/M
3300005169	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006574	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010147	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018077	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019876	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3a2	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300030902	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_356 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
N57_05933990	2170459013	Grass Soil	LGIIRQIEFELEKAERRMALPYDAERVGQLRKMLAEARRRKLSAGLAARRDRRDTTA
FD2_07499680	2189573001	Grass Soil	MKAAQPPSVTIRQIEFELEKAEHGMGLPYDAERVMQLRNMLREARKRKLSRALAAKRELPRS
JGI1027J11758_130339081	3300000789	Soil	QIEFELEKAEHGMGLPYDAERVMQLRNMLRXARKRKLSRALAAKRELPRS*
JGI10216J12902_1075440802	3300000956	Soil	MKATQPPSVTIRQIEFELEKAEHGLALPYDADRVSQLRNMLREARQRKLSDALARRPRRYDRRDATS*
C688J35102_1192270201	3300002568	Soil	LKAAQPPSVTIRQIEFELEKAEHGMGLPYDAERVMQLRSLLREARKKKLSAGLKARREQGRR*
Ga0063454_1004335363	3300004081	Soil	VEMKAAQPPSVTIRQIEFELKKAEHGMGLPYDAERVMQLRNRLREARKRKLSRALAAKRELPRS*
Ga0063454_1020859731	3300004081	Soil	VEMKAAQPPSVTIRQIEFELEKAEHGMGLPYDAERVMQLRSLLREARKKKLSAGLKARREQGRR*
Ga0063455_1003383742	3300004153	Soil	MNADSTIRQIEFELEKAEHGMAMPYDAERVGQLRKMLVEARKRKLSGGLKARSGRR*
Ga0063455_1013608742	3300004153	Soil	PPSVTIRQIEFELKKAEHGMGLPYDAERVMQLRNRLREARKRKLSRALAAKRELPRS*
Ga0066808_10401412	3300005159	Soil	VNSVADTSIRQIEFELEKAERGLGMPYDGERVGQLRNMLREARKPKLSAGLKARREQGRR
Ga0066814_101259631	3300005162	Soil	MKAALSVTIRQIEFELEKAEHGMGMPYDAERVGQLRSMLREARKKKLSAGLKARREQTPR
Ga0066823_100549991	3300005163	Soil	MHSGEAGGGRGLVEMKVAPSVIRQIEFELEKAEHGMGMPYDAERVGQLRSMLREKKKLSAGLKARREQGQR*
Ga0066815_100165262	3300005164	Soil	MKAAQPPSVTIRQIEFELEKAEHGMGLPYDAERVMQLRNMLREARRRKLSRALAAKRELPRS*
Ga0066869_100743171	3300005165	Soil	MKVAQPLSVTIRQIEFELEKAEHGMGMPYDAERVGQLRSMLREARKKKLFAGLKARRKQGQR*
Ga0066810_100904802	3300005169	Soil	MKAAQPPSVTIRQIEFELEKAEHGMGLPYDAERVMQLRNMLREARKRKLSRALAAKRELPRS*
Ga0070690_1012174882	3300005330	Switchgrass Rhizosphere	MTTDPRVSATTIRQIEFELEKAEHGMAMPYDAERVLQLRNMLREARKRKLSDGLKARREQTQR*
Ga0070674_1004392132	3300005356	Miscanthus Rhizosphere	VNREPDTPIRQIEFELEKAERGLGMPYDGERVGQLRNMLREARKRKLSAGLKARREQE*
Ga0070674_1008227691	3300005356	Miscanthus Rhizosphere	MKAAPSVTIRQIEFELEKAEHGMGLPYDAERVGQLRSTLREARKKKLSAGLRARRKQR*
Ga0070662_1002935432	3300005457	Corn Rhizosphere	MKAAQPPSVTIRQIEFELEKAEDGMGLPYDAERVMQLRNMLREARKRKLSRALAAKRELPRS*
Ga0068867_1017657702	3300005459	Miscanthus Rhizosphere	VNREPHTTIRQIEFELEKAERGLAVPYDAEHVGQLRNMLREARKRELSAGLKARREQE*
Ga0070693_1008694921	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	RGLVEMKAAQPPSVTIRQIEFELEKAERGMGLPYDAERVMQLRNMLREARKRKLSAGLKARREQE*
Ga0068866_109966421	3300005718	Miscanthus Rhizosphere	TAQPLSPTIGQIEFELEKAERGMGMPYDAERVGQLRNMLREARKRKLSAGLKARREQE*
Ga0068861_1006824303	3300005719	Switchgrass Rhizosphere	MKAAQPPSVTIRQIEFELEKAERGMGLPYDAERVMQLRNMLREARKRKLSRALAAKRELPRS*
Ga0066903_1017881641	3300005764	Tropical Forest Soil	MPTTIRQIELELYKAEHGLGMPYDAERVAQLRSMLREARKQKLSGLLAAKRGQPPSAER*
Ga0075024_1008661542	3300006047	Watersheds	MKAAQPLSVTIRQIEFELEKAEHGLAMPYDAERVGQLRNMLVEARKRKLSVGLKARREQGRR*
Ga0074056_114342381	3300006574	Soil	MKATQPPSVTIRQIEFEPEKAEHGMGMPYDAERVGQLRSMLREARKKKLSAGLKARREQT
Ga0074048_117266092	3300006581	Soil	LVVMKATQPPSVTIRQIEFELEKAEHGMGMPYDAERVGQLRSMLREKKKLSAGLKARRKQGSG*
Ga0074063_140909911	3300006953	Soil	MKATQPPSVTIRQIEFELEKAEHGMGMPYDAERVRQLRSMLREARKKKLSAGLKARREAGAAVRREAEEDWG
Ga0099792_100442882	3300009143	Vadose Zone Soil	MKAAQPPSVTIRQIEFELEKAEHGMALPYDAERVMQLRNMLREARKRKLSRALAAKRELPRS*
Ga0099792_104343041	3300009143	Vadose Zone Soil	MVEMKVAQPPSVAIRQIEFELEKAEHGMGMPYDAERVGQLRSMLREARKKKLSAGLKARRKRGQR*
Ga0105242_107413303	3300009176	Miscanthus Rhizosphere	MRQIDFELEKAEHGMGLPYDAERVMQLRNMLREARKRKLSRALAAKRELPRS*
Ga0126319_13991622	3300010147	Soil	MKATQPPSVTIRQIEFELEKAEHGMGLRYDASMLREARKRKLSRALAAKRELPRS*
Ga0099796_101920372	3300010159	Vadose Zone Soil	MKAEQPPSVTIRQIEFELEKAEHGMGLPYDAERVMQLRNMLREARKRKLSRALAAKRELPRS*
Ga0126370_120510271	3300010358	Tropical Forest Soil	MPTTIRQIELELYKAEHGLGMPYDAERVAQLRSMLREARKRKLSKGLAAKRRQPPSDER*
Ga0126379_115031371	3300010366	Tropical Forest Soil	MPDATTIRQIEFELYKAERGLGMPYDAERVAQLRSMLREARKRKLSKGLAAKRRQPPSDER*
Ga0134124_112674212	3300010397	Terrestrial Soil	VNRVADASIRQIEFELVKAEHGMAMPYDAERVGQLRNMLREARKRKLYAGLKARREQTPR
Ga0134122_117263051	3300010400	Terrestrial Soil	MKAAQPPSVTIRQIEFELEKAEHGMGLPYDAERVMQLRNILEARKRKLSRALAAKRELPRS*
Ga0105246_114452172	3300011119	Miscanthus Rhizosphere	VNREPHTTIRQIEFELEKAERGLAVPYDAEHVGQLRNMLREARKRKLSAGLKARREQE*
Ga0105246_121454601	3300011119	Miscanthus Rhizosphere	LTLRQLKFELEKAEHGMALPYDTERVGQLRNMLVEARKRKLSAGLKARREAAEGWGQC*
Ga0137399_105987121	3300012203	Vadose Zone Soil	MMAAQPPSVTIRQIEFELEKAEHGMGLPYDAERVMQLRNMLREARKRKLSRALAAK
Ga0150985_1110223811	3300012212	Avena Fatua Rhizosphere	MKAAQPPSVTIRQIEFELKKAENGMGLPYDTERVMQLRNRLREARKRKLSRALAAKRELPRS*
Ga0150985_1114112883	3300012212	Avena Fatua Rhizosphere	VNREPDTTIRQIEFELEKAERGLAMPYDAERVGQLRNMLREARKRKLSAGLKARREQK*
Ga0150985_1155099331	3300012212	Avena Fatua Rhizosphere	MKTAQPPSVTIRQIEFELEKAEHGMGLPYDAERVGQLRKMLVEARKRRLSAGLAARRKQDPRSG*
Ga0150985_1210345362	3300012212	Avena Fatua Rhizosphere	MKTAPSVIIRRIEFELEKAEHGMGLPYDAERVGQLRSMLREARKKKLSAGLRARRKQR*
Ga0150985_1227503671	3300012212	Avena Fatua Rhizosphere	MKAVQPMSTTIRQIEFELEKAEHGMSMPYDAERVMQLRSMLREARKQKLSAGLRARREKGHG*
Ga0150984_1025692461	3300012469	Avena Fatua Rhizosphere	MTTDPRPSAAIRQIEFELEKAEHGMAMPYDSENVARLRGMLRDARKRKLSEGLRARREKRRSIVAT*
Ga0150984_1072520222	3300012469	Avena Fatua Rhizosphere	MNVDSTIRHIEFELEKAEHGMAMPYDAERVGQLRKMLVEARKRKLSAGLKARREQGRR*
Ga0150984_1138526443	3300012469	Avena Fatua Rhizosphere	VNREPDTTIRQIEFELEKAEHGMAMPYDAVRVGQLRKMLREARKRKLSAGLKARREQTER
Ga0157301_103759072	3300012911	Soil	VNREPDTTVRQIEFELEKAERGLGMPYDAERVGQLRTMLREARKRKLSAGLKARREQE*
Ga0137413_101517362	3300012924	Vadose Zone Soil	MVEIKVAQPPSVAIRQIEFELEKAEHGMGMPYDAERVGQLRSMLREARKRKLSAEPKARREQGPR*
Ga0164299_108582022	3300012958	Soil	MTAQPLSPTIGQIEFELEKAERGMGMPYDAERVGQLRNMLREARKRKLSAGLKARREQE*
Ga0164299_111355971	3300012958	Soil	VNSVADTSIRQIEFELEKAEHGMALPYDAELVGQLRKMLREARKRKLSAGLKARREQE*
Ga0164301_115611622	3300012960	Soil	MKAAQPPSVTVLQIEFELEKAEHGMGLPYDAERVMQLRNMLREARKRKLSRALAAKRELPRS*
Ga0164301_116515631	3300012960	Soil	QIEFELEKAEHGMGLPYDAERVMQLRNRLREARKRKLSRALAAKRELPRS*
Ga0164308_110162671	3300012985	Soil	MKAAQPPSVTIRQIEFELEKAERGMGLPYDAERVMQLRNMLREARKRKLSVGLK
Ga0164308_119413532	3300012985	Soil	LVEMKASQPIRQIEFELEKAEHGMAMPYDAERVGELRGMLREARKRKLSAGLKAIRE
Ga0164308_122070552	3300012985	Soil	VNRVADTSIRQTEFELEKAEHGMAMPYDAENVARVRGMLQKARAQNLSAGLRARREAGRDPHY
Ga0164307_108614712	3300012987	Soil	LVEMKASQPIRQIEFELEKAEHGMAMPYDAERVGELRGMLREARKRKLSAGLKAIRERTPR*
Ga0164306_104411001	3300012988	Soil	VNHVADTNIRQIEFELEKAEHGMALPYDAELVGQLRKMLREARKRKLSAGLKARREQE*
Ga0164305_103125272	3300012989	Soil	MKAAQPPSVTILQIEFELEKAEHGMGLPYDAERVMQLRNRLREARKRKLSRALAAKRELPRS*
Ga0157378_103588953	3300013297	Miscanthus Rhizosphere	VNREPDTPIRQIEFELEKAERGLGMPYDGERVGQLRNLLREACKRKLSAGLKARREQE*
Ga0157380_115502442	3300014326	Switchgrass Rhizosphere	VSREPDTPIRQIEFELEKAERGLGMPYDGERVGQLRNMLREARKRKLSAGLKARREQE*
Ga0137412_101294003	3300015242	Vadose Zone Soil	MMAAQPPSVTIRQIEFELEKAEHGMGLPYDAERVMQLRNMLREARKRKLSRALAAKRELPRS*
Ga0137412_111706931	3300015242	Vadose Zone Soil	MVEIKVAQPPSVAIRQIEFELEKAEHGGLPYDAERVMQLRSMLREARKKKLSAGLKARREQRRR*
Ga0132258_118678403	3300015371	Arabidopsis Rhizosphere	MKVAQPPSVTIRQIEFELEKAEHGVGHMQLRNMLREARKRKLSRALAAKRELPRS*
Ga0132258_122541501	3300015371	Arabidopsis Rhizosphere	MTEQRLSAATIRQIKFELEKAEHGMALPCDTERVMQLRSMLREARKQTLSARVRREKGQR
Ga0132258_130599232	3300015371	Arabidopsis Rhizosphere	MKATQPPSVTIRQIEFELEKAEHGMGMPYDAERVGQLRSMLREVRKKKLSAGLRA
Ga0132258_137318782	3300015371	Arabidopsis Rhizosphere	MKAAQPLSVIRQIEFELEKAEHGMGMPYDAERVGQLRSMLRKAKKLSAGLKARREQTPR*
Ga0132257_1021474861	3300015373	Arabidopsis Rhizosphere	TQPPSVTIRQIEFELEKAEHGMGMPYDAERVGQLRSMLRKAKKLSAGLKARREQGQR*
Ga0132255_1020744442	3300015374	Arabidopsis Rhizosphere	MKTAQSPSVTIRQIEFELEKAEHGMGLPYDTERVMQLRSMLREERKKKLSAGLKARQEQGRR*
Ga0132255_1030074841	3300015374	Arabidopsis Rhizosphere	MKVAQPPSVTIRQIEFELEKAEHGVGHMQLRNMLREARKRKLSRALAAKRE
Ga0132255_1036921601	3300015374	Arabidopsis Rhizosphere	MKVVQPPSVTIRQIEFQLEKAEHGMVMPYDAERVRQLRSMLREVRKKKLSAGLRARRKQR
Ga0184608_104392292	3300018028	Groundwater Sediment	MKAAQPPSVTIRQIEFELEKAEHGMGMPYDAERVGQLRNMLREARKKKLSAGLKARRRRR
Ga0184611_11430102	3300018067	Groundwater Sediment	MTREHPTSITIRQIEFELHKAEYGMGMPYDAERVDQLRHMLRDARKRKLSAGLKARREQK
Ga0184635_101394421	3300018072	Groundwater Sediment	PPSVTIPQIEFELEKAEHGMGMPYDAERVGQLRSMLREKKKLSAGLKARRNQGQR
Ga0184635_103873162	3300018072	Groundwater Sediment	MKAAQPLSVTIRQIEFELEKAEHGMGMPYDAERVGQLRKMLVEARKRKLSGGLKARREQTPR
Ga0184624_101981513	3300018073	Groundwater Sediment	SVTIRQIEFELEKAEHGMGMPYDAERVGQLRSMLRKAKKLSAGLKARREQTPR
Ga0184624_103540231	3300018073	Groundwater Sediment	RGWVELKAAQPMSTTIGQIEFELEKAEHGMGLPERVGQLRSILREVRKRKLSGGLAERRKDVTGAT
Ga0184633_103112552	3300018077	Groundwater Sediment	MKAAQPLSVIRQIEFELEKAEHGMGMPYDAERVGQLRSMLREKKKLSAGLKARRNQGQR
Ga0190270_113820883	3300018469	Soil	VTYVRIQQIEFELEKAEHGMALPYDAERVMQLRSMLREARKRKLSGGLAAKRERHRR
Ga0190270_120257942	3300018469	Soil	MNTDNTTIRQLEFEMEKAEHGMGLPYDAERVGQLRSMLREARKKKLSAGLKARRNQGQR
Ga0190270_129944032	3300018469	Soil	EPRLSSTIQQIEFELEKAERGMAVPYDAERVMQLRHMLREVRKQKLSAGLRLRRERGQQ
Ga0190274_102291392	3300018476	Soil	MSTTIGQIEFELEKAEHGMGLPERVGQLRSILREVRKRKLSGGLAERRKDVTGAT
Ga0190271_110548323	3300018481	Soil	MTEPRLSATTIHQIEFELEKAERGLAMPYDAERVMQLRSVLREARKQKLSAGLRARREKGQR
Ga0190271_118339911	3300018481	Soil	MKFTQPMSTTAIRQIEFQLAKAEHGMGMPYDAENVARLRGMLREARKRKLSEGLR
Ga0193703_10272251	3300019876	Soil	MKAAQPMSTTIRQIEFELEKAEHGMSMPYDAERVIQLRRMLRDARKQKLSAGLRARREKDHR
Ga0193730_10198752	3300020002	Soil	MKTAQPPSVTIRQIEFELEKAEHGMALPYDAERVGQLRKMLVEARKRKLSAGLKARREQGPR
Ga0193730_11680471	3300020002	Soil	MKATQPPSVTIRQIEFELEKAEHGMALPYDAERVMQLRSMLRDARKRKLSAGLAAKREPLRR
Ga0193699_102887471	3300021363	Soil	LVEMKAAQPPSVTIRQIEFELEKAEHGMGLPYDAERVMQLRNMLREARKRKLSRALAAKRELPRS
Ga0224452_10817071	3300022534	Groundwater Sediment	VNRVTATTTIRQIEFELERAEHGMALPYDAERVGQLRSRLREARKRKLSAELKA
Ga0222622_106467182	3300022756	Groundwater Sediment	MKVAQPPSVTIRQIEFELEKAEHGMGMPYDAERVGQLRSMLREKKKLSAGLKARREQGRR
Ga0207686_100537076	3300025934	Miscanthus Rhizosphere	MKAAQPLSVTIRQIEFELEKAEHGMGLPYDAERVMQLRNMLREARKRKLSRALAAKRELPRS
Ga0207709_103997352	3300025935	Miscanthus Rhizosphere	LKPLPTTIWQIEFALEKAEHGMAMPYDAERVDQLRNMLREARKRKLSAGLKARREQE
Ga0207691_115743772	3300025940	Miscanthus Rhizosphere	MKAAQPPSVTIRQIEFELEKAELGMGLPYDAERVMQLRNMLREARKRKLSRALAAKRELPRS
Ga0207668_112877701	3300025972	Switchgrass Rhizosphere	MKAAQPPSVTIRQIEFELEKAEHGMGLPYDTERVMQLRNMLREARKRKLSRALAAKRELPRS
Ga0207708_109915202	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	VNREPDTPIRQIEFELEKAERGLGMPYDGERVGQLRNMLREARKRKLSAGLKARREQE
Ga0207675_1005230213	3300026118	Switchgrass Rhizosphere	MKAAQPPSVTIRQIEFELEKAERGMGLPYDAERVMQLRNMLREARKRKLSRALAAKRELPRS
Ga0209488_112371792	3300027903	Vadose Zone Soil	MVEMKVAQPPSVAIRQIEFELEKAEHGMGMPYDAERVGQLRSMLREARKKKLSAGLKARRKRGQR
Ga0137415_103753971	3300028536	Vadose Zone Soil	MKAAQPPSVTIRQIEFELETEHGMGLPYDAERVMQLRNMLREARKRKLSRALAAKRELPRIVQRLPRLTGADFLW
Ga0307293_102719572	3300028711	Soil	MKATQPPSVTIRQIEFELEKAEHGMALPYDAERVMQLRSMLRDARKRRLSAGLAAKREPL
Ga0307313_101667212	3300028715	Soil	VNRVTATTTIRQIEFELERAEHGMALPYDAERVGQLRSRLREARKRKLSAELKARREQGP
Ga0307280_103061863	3300028768	Soil	MKATQPPSVTIRQIEFELEKAEHGMALPYDAERVMQLRSMLRDARKRRLSAGLAAKREPLRR
Ga0307288_103904342	3300028778	Soil	LGKVNRVTATTTIRQIEFELERAEHGMALPYDAERVGQLRSRLREARKRKLSAELKARREQGPR
Ga0307323_101786672	3300028787	Soil	MNADTDNTIIRQIEFELEKAEHGMALPYDAERVGQLRNMLREARKRKLSAGLKARREQGP
Ga0307299_102270302	3300028793	Soil	MVEMKAAQPPSVTIRQIEFELEKAEHGMGMPYDAERVGQLRSLLREARKKKLSAGLRARRKAAMT
Ga0307299_103871672	3300028793	Soil	MKTAQAPSTTIRQIEFELEKAEHGMGLPYDAERVAQLRGMLREARKRKLSRAPAAKREQGPR
Ga0307284_102068102	3300028799	Soil	MKPAQPLSVTIRQIEFELEKAEHGMGLPYDAERVGQLRSMLCEARKRKLSRALAAKRERP
Ga0307281_101517931	3300028803	Soil	MKVAQPLSVTIRQIEFELEKAEHGMGMPYDAERVGQLRSMLREAKKLSAGLRARRKQR
Ga0307296_102434953	3300028819	Soil	MKAAQPPSITIRQIEFELEKAEHGMGLPYDAERVMQLRNMLREARKGKLSRALAAKRELPRS
Ga0307296_105263372	3300028819	Soil	MKVAQPPSVTIRQIEFELEKAEHGMGMPYDAERVGQLRKLLVEARKKKLSAGLKARREQR
Ga0307296_106338353	3300028819	Soil	TADDPDRTTIRQLEFELEKAEHGMGMPYDAERVGRLRSMLREKKKLSAGLKARQKQR
Ga0307296_107936161	3300028819	Soil	MSTNTDSTIHQIELELEKAEHGMALPYDAERVEQLRKMLVEARKWKLSAGLKARQPQWLP
Ga0307310_107359031	3300028824	Soil	GRGLVEMKATQPPSVTIRQIEFELEKAEHGMALPYDAERVMQLRSMLRDARKRKLSAGLAAKREPLRR
Ga0307286_100989573	3300028876	Soil	VNRVTATTIRQIEFELERAEHGMALPYDAERVGQLRSMLREARKRKLSAEPKARREQGPR
Ga0307278_101867383	3300028878	Soil	MKAAPSVTIRQIEFELEKAEHGMGMPYDAERVGQLRSMLREARKKKLSAGLRARRKQR
Ga0307277_103383253	3300028881	Soil	EAGGGGGLVVMKATQPPSVTIRQIEFELEKAEHGMGMPYDAERVGQLRKLLVEARKKKLSAGLKARQEQR
Ga0308202_10856582	3300030902	Soil	VNRVTATTIRQIEFELEKAEHGMALPYDAERVGQLGSMLREARKRKLSAELKARREQGPR
Ga0308187_103053412	3300031114	Soil	MGLMNTDSTTIRRIEFELEKAEHGMAMPYDAERVGQLRKLLVEARKRKLSAGLKARREQGRR
Ga0307498_101195502	3300031170	Soil	MKVAQPPSVTIRQIEFELEKAEHGMALPYDAERVGQLRKMLVEARKRKLSAGLAARRRRDRRDATS
Ga0307497_102180683	3300031226	Soil	VEMKVAQPLSVTIRQIEFELEKAEHGMGMPYDAERVGQLRKMLVEARKKKLSAGLKARREQR
Ga0307497_104964972	3300031226	Soil	MKAAQPLSVTIRQIEFELLKAEHGMALPYDAERVGQLRQMLVEARKRKLSDGLKARREQGRR
Ga0170824_1226383132	3300031231	Forest Soil	MKVAQPPSVTIRQIEFELEKAEHGMGMPYDAERVGQLRSMLREARKRKLFAGLKARRKQGQR
Ga0170824_1260752911	3300031231	Forest Soil	MKVAQPLSVTIRQIEFELEKAEHGMGMPYDAERVGQLRKMLVEARKRKLSAGLKARREQTPR
Ga0170819_104892192	3300031469	Forest Soil	MKVAQPLSVTIRQIEFELEKAEHGMGMPYDAERVGQLRSMLREARKRKLFAGLKARRKQGQR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F068803

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences