Metagenome / Metatranscriptome Family F069028

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F069028
Family Type	Metagenome / Metatranscriptome
Number of Sequences	124
Average Sequence Length	96 residues
Representative Sequence	MTDADLAVALHFARNGSPEGHRVEALETHIAALKEVVANAKAEIEQTRQKADALSRQVAEQSAANDKLQAELDNLRAGINAYWQQVVRNLCS
Number of Associated Samples	105
Number of Associated Scaffolds	124

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	50.81 %
% of genes near scaffold ends (potentially truncated)	30.65 %
% of genes from short scaffolds (< 2000 bps)	85.48 %
Associated GOLD sequencing projects	98
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (65.323 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (22.581 % of family members)
Environment Ontology (ENVO)	Unclassified (23.387 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (38.710 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 90.22% β-sheet: 0.00% Coil/Unstructured: 9.78%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 124 Family Scaffolds
PF04392	ABC_sub_bind	12.90
PF00202	Aminotran_3	9.68
PF01266	DAO	4.84
PF13924	Lipocalin_5	4.84
PF00355	Rieske	3.23
PF03547	Mem_trans	3.23
PF00171	Aldedh	2.42
PF09992	NAGPA	1.61
PF07045	DUF1330	1.61
PF13392	HNH_3	0.81
PF00034	Cytochrom_C	0.81
PF00440	TetR_N	0.81
PF04966	OprB	0.81
PF11149	DUF2924	0.81
PF06577	EipA	0.81
PF00753	Lactamase_B	0.81
PF03733	YccF	0.81
PF13378	MR_MLE_C	0.81
PF12833	HTH_18	0.81

COG ID	Name	Functional Category	% Frequency in 124 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	12.90
COG0679	Predicted permease, AEC (auxin efflux carrier) family	General function prediction only [R]	3.23
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	2.42
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	2.42
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	2.42
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	1.61
COG3304	Uncharacterized membrane protein YccF, DUF307 family	Function unknown [S]	0.81
COG3659	Carbohydrate-selective porin OprB	Cell wall/membrane/envelope biogenesis [M]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	65.32 %
Unclassified	root	N/A	34.68 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	65.32 %
Unclassified	root	N/A	34.68 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	65.32 %
Unclassified	root	N/A	34.68 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	47.58 %
Unclassified	root	N/A	34.68 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.68 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	29.84 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.68 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	23.39 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.81 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.81 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.68 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	11.29 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6.45 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.81 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.81 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.68 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	9.68 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.84 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.81 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.81 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.81 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.68 %
Methyloceanibacter superfactus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter superfactus	8.06 %
Bradyrhizobium valentinum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	0.81 %
unclassified Hyphomicrobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium	0.81 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.81 %
Smaragdicoccus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Smaragdicoccus	0.81 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.81 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.68 %
Methyloceanibacter superfactus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter superfactus	8.06 %
Bradyrhizobium sp. ARR65	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ARR65	0.81 %
Smaragdicoccus niigatensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Smaragdicoccus → Smaragdicoccus niigatensis	0.81 %
Hyphomicrobium sp. ghe19	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp. ghe19	0.81 %
Bradyrhizobium valentinum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	0.81 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.81 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2166559005\|cont_contig106476	Not Available	556	Open in IMG/M
2170459002\|FZY7DQ102GM4BL	Not Available	533	Open in IMG/M
2170459010\|GIO7OMY02FJL4Z	Not Available	529	Open in IMG/M
2170459010\|GIO7OMY02FOXQZ	Not Available	502	Open in IMG/M
2189573000\|GPBTN7E01D8AWG	Not Available	510	Open in IMG/M
3300000816\|AF_2010_repII_A10DRAFT_1019155	All Organisms → cellular organisms → Bacteria → Proteobacteria	721	Open in IMG/M
3300000955\|JGI1027J12803_101701811	All Organisms → cellular organisms → Bacteria → Proteobacteria	535	Open in IMG/M
3300004479\|Ga0062595_100064332	All Organisms → cellular organisms → Bacteria	1764	Open in IMG/M
3300004479\|Ga0062595_101018974	Not Available	714	Open in IMG/M
3300004479\|Ga0062595_101088377	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter superfactus	697	Open in IMG/M
3300004633\|Ga0066395_10289139	All Organisms → cellular organisms → Bacteria → Proteobacteria	892	Open in IMG/M
3300005294\|Ga0065705_10344978	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	954	Open in IMG/M
3300005331\|Ga0070670_100176417	Not Available	1854	Open in IMG/M
3300005332\|Ga0066388_100471640	All Organisms → cellular organisms → Bacteria	1895	Open in IMG/M
3300005332\|Ga0066388_101238299	Not Available	1280	Open in IMG/M
3300005347\|Ga0070668_100715922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	884	Open in IMG/M
3300005356\|Ga0070674_101877624	Not Available	544	Open in IMG/M
3300005366\|Ga0070659_100689039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	883	Open in IMG/M
3300005439\|Ga0070711_100990058	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300005547\|Ga0070693_101415578	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Smaragdicoccus → Smaragdicoccus niigatensis	541	Open in IMG/M
3300005548\|Ga0070665_100222073	All Organisms → cellular organisms → Bacteria	1890	Open in IMG/M
3300005548\|Ga0070665_101369825	Not Available	717	Open in IMG/M
3300005713\|Ga0066905_100258671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1342	Open in IMG/M
3300005713\|Ga0066905_100492218	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1017	Open in IMG/M
3300005713\|Ga0066905_101125176	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter superfactus	698	Open in IMG/M
3300005764\|Ga0066903_100114806	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3712	Open in IMG/M
3300005937\|Ga0081455_10191589	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter superfactus	1539	Open in IMG/M
3300006049\|Ga0075417_10046355	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1861	Open in IMG/M
3300006196\|Ga0075422_10046840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1555	Open in IMG/M
3300006844\|Ga0075428_100760733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1031	Open in IMG/M
3300006847\|Ga0075431_101453509	Not Available	644	Open in IMG/M
3300006852\|Ga0075433_10674829	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	906	Open in IMG/M
3300006854\|Ga0075425_100081738	All Organisms → cellular organisms → Bacteria → Proteobacteria	3654	Open in IMG/M
3300006871\|Ga0075434_100089986	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter superfactus	3070	Open in IMG/M
3300006904\|Ga0075424_100173103	Not Available	2290	Open in IMG/M
3300007076\|Ga0075435_101609968	Not Available	570	Open in IMG/M
3300009094\|Ga0111539_11181099	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter superfactus	889	Open in IMG/M
3300009098\|Ga0105245_12024391	All Organisms → cellular organisms → Bacteria → Proteobacteria	629	Open in IMG/M
3300009147\|Ga0114129_10070459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4876	Open in IMG/M
3300009147\|Ga0114129_11148928	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter superfactus	970	Open in IMG/M
3300009148\|Ga0105243_10437490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter superfactus	1224	Open in IMG/M
3300009156\|Ga0111538_11085327	Not Available	1012	Open in IMG/M
3300009177\|Ga0105248_10930526	Not Available	982	Open in IMG/M
3300009545\|Ga0105237_12761692	Not Available	502	Open in IMG/M
3300009792\|Ga0126374_10191969	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1283	Open in IMG/M
3300010043\|Ga0126380_10001464	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ARR65	8966	Open in IMG/M
3300010043\|Ga0126380_10176480	All Organisms → cellular organisms → Bacteria	1402	Open in IMG/M
3300010046\|Ga0126384_10028432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3689	Open in IMG/M
3300010047\|Ga0126382_10070051	All Organisms → cellular organisms → Bacteria	2145	Open in IMG/M
3300010358\|Ga0126370_10117945	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1875	Open in IMG/M
3300010359\|Ga0126376_10096021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	2246	Open in IMG/M
3300010360\|Ga0126372_10126630	All Organisms → cellular organisms → Bacteria	1987	Open in IMG/M
3300010366\|Ga0126379_10183109	All Organisms → cellular organisms → Bacteria	1994	Open in IMG/M
3300010366\|Ga0126379_11642609	Not Available	747	Open in IMG/M
3300010371\|Ga0134125_10539175	All Organisms → cellular organisms → Bacteria → Proteobacteria	1291	Open in IMG/M
3300010398\|Ga0126383_10009180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	7080	Open in IMG/M
3300010400\|Ga0134122_10379949	All Organisms → cellular organisms → Bacteria → Proteobacteria	1240	Open in IMG/M
3300012208\|Ga0137376_10893922	Not Available	763	Open in IMG/M
3300012515\|Ga0157338_1029811	Not Available	689	Open in IMG/M
3300012955\|Ga0164298_10514720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter superfactus	803	Open in IMG/M
3300012957\|Ga0164303_10318219	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	926	Open in IMG/M
3300012961\|Ga0164302_11555659	Not Available	548	Open in IMG/M
3300012984\|Ga0164309_11205456	Not Available	635	Open in IMG/M
3300012986\|Ga0164304_10797619	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter superfactus	728	Open in IMG/M
3300013306\|Ga0163162_10968314	All Organisms → cellular organisms → Bacteria → Proteobacteria	961	Open in IMG/M
3300013306\|Ga0163162_12239509	Not Available	627	Open in IMG/M
3300015371\|Ga0132258_11199168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1919	Open in IMG/M
3300015371\|Ga0132258_13879394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp. ghe19	1017	Open in IMG/M
3300015374\|Ga0132255_100235383	All Organisms → cellular organisms → Bacteria → Proteobacteria	2610	Open in IMG/M
3300015374\|Ga0132255_101099859	All Organisms → cellular organisms → Bacteria → Proteobacteria	1195	Open in IMG/M
3300015374\|Ga0132255_106261904	Not Available	504	Open in IMG/M
3300018028\|Ga0184608_10396433	Not Available	600	Open in IMG/M
3300018067\|Ga0184611_1015286	Not Available	2279	Open in IMG/M
3300018073\|Ga0184624_10028127	All Organisms → cellular organisms → Bacteria	2154	Open in IMG/M
3300018081\|Ga0184625_10095183	All Organisms → cellular organisms → Bacteria	1534	Open in IMG/M
3300019878\|Ga0193715_1120094	Not Available	509	Open in IMG/M
3300020006\|Ga0193735_1120761	Not Available	713	Open in IMG/M
3300020018\|Ga0193721_1102571	Not Available	732	Open in IMG/M
3300021078\|Ga0210381_10069367	All Organisms → cellular organisms → Bacteria	1096	Open in IMG/M
3300021344\|Ga0193719_10194792	All Organisms → cellular organisms → Bacteria	867	Open in IMG/M
3300021560\|Ga0126371_12061751	Not Available	687	Open in IMG/M
3300022694\|Ga0222623_10010929	All Organisms → cellular organisms → Bacteria → Proteobacteria	3303	Open in IMG/M
3300022756\|Ga0222622_10540232	Not Available	836	Open in IMG/M
3300025900\|Ga0207710_10172172	Not Available	1059	Open in IMG/M
3300025916\|Ga0207663_10981799	All Organisms → cellular organisms → Bacteria → Proteobacteria	677	Open in IMG/M
3300025932\|Ga0207690_10786055	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	786	Open in IMG/M
3300026121\|Ga0207683_10130669	All Organisms → cellular organisms → Bacteria → Proteobacteria	2259	Open in IMG/M
3300027873\|Ga0209814_10043131	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1879	Open in IMG/M
3300027874\|Ga0209465_10136499	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1214	Open in IMG/M
3300027909\|Ga0209382_10528427	All Organisms → cellular organisms → Bacteria → Proteobacteria	1295	Open in IMG/M
3300028379\|Ga0268266_10303881	All Organisms → cellular organisms → Bacteria	1489	Open in IMG/M
3300028381\|Ga0268264_11529183	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300028708\|Ga0307295_10127118	Not Available	699	Open in IMG/M
3300028768\|Ga0307280_10397033	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	514	Open in IMG/M
3300028787\|Ga0307323_10215997	Not Available	692	Open in IMG/M
3300028793\|Ga0307299_10027771	All Organisms → cellular organisms → Bacteria → Proteobacteria	2049	Open in IMG/M
3300028793\|Ga0307299_10113912	Not Available	1013	Open in IMG/M
3300028811\|Ga0307292_10138467	All Organisms → cellular organisms → Bacteria	977	Open in IMG/M
3300028814\|Ga0307302_10124291	All Organisms → cellular organisms → Bacteria → Proteobacteria	1241	Open in IMG/M
3300028814\|Ga0307302_10485718	Not Available	613	Open in IMG/M
3300028819\|Ga0307296_10091453	All Organisms → cellular organisms → Bacteria	1627	Open in IMG/M
3300028819\|Ga0307296_10163057	All Organisms → cellular organisms → Bacteria → Proteobacteria	1206	Open in IMG/M
3300028824\|Ga0307310_10166894	All Organisms → cellular organisms → Bacteria	1024	Open in IMG/M
3300028878\|Ga0307278_10038468	Not Available	2179	Open in IMG/M
3300031170\|Ga0307498_10029091	All Organisms → cellular organisms → Bacteria → Proteobacteria	1343	Open in IMG/M
3300031170\|Ga0307498_10032188	Not Available	1299	Open in IMG/M
3300031170\|Ga0307498_10033034	All Organisms → cellular organisms → Bacteria	1289	Open in IMG/M
3300031184\|Ga0307499_10216816	Not Available	596	Open in IMG/M
3300031198\|Ga0307500_10043462	All Organisms → cellular organisms → Bacteria	1062	Open in IMG/M
3300031226\|Ga0307497_10006141	All Organisms → cellular organisms → Bacteria	3234	Open in IMG/M
3300031421\|Ga0308194_10339585	Not Available	531	Open in IMG/M
3300031469\|Ga0170819_17361070	Not Available	719	Open in IMG/M
3300031547\|Ga0310887_10142783	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1245	Open in IMG/M
3300031562\|Ga0310886_10100195	All Organisms → cellular organisms → Bacteria → Proteobacteria	1441	Open in IMG/M
3300031847\|Ga0310907_10117834	Not Available	1174	Open in IMG/M
3300031854\|Ga0310904_11175346	All Organisms → cellular organisms → Bacteria → Proteobacteria	552	Open in IMG/M
3300031858\|Ga0310892_10110337	All Organisms → cellular organisms → Bacteria → Proteobacteria	1525	Open in IMG/M
3300031908\|Ga0310900_10227819	All Organisms → cellular organisms → Bacteria → Proteobacteria	1328	Open in IMG/M
3300031940\|Ga0310901_10180322	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	830	Open in IMG/M
3300032000\|Ga0310903_10118293	Not Available	1153	Open in IMG/M
3300032003\|Ga0310897_10213480	All Organisms → cellular organisms → Bacteria	847	Open in IMG/M
3300032012\|Ga0310902_11007330	Not Available	579	Open in IMG/M
3300032180\|Ga0307471_102096140	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter superfactus	711	Open in IMG/M
3300032211\|Ga0310896_10149984	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1104	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	67.74%
Host-Associated	Host-Associated	31.45%
Engineered	Engineered	0.81%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	62.10%
Plants	Host-Associated → Plants	31.45%
Aquatic	Environmental → Aquatic	5.65%
Modeled	Engineered → Modeled	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	62.10%
Rhizosphere	Host-Associated → Plants → Rhizosphere	22.58%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.87%
Sediment	Environmental → Aquatic → Sediment	4.84%
Freshwater	Environmental → Aquatic → Freshwater	0.81%
Simulated Communities (Sequence Read Mixture)	Engineered → Modeled → Simulated Communities (Sequence Read Mixture)	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	53.23%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	16.13%
Loam	Environmental → Terrestrial → Soil → Loam	8.87%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.45%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.03%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.03%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.81%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.81%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	35.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	16.13%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	8.87%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.45%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.84%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.03%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.03%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.03%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.42%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.42%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.42%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.81%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	22.58%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	12.10%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	8.87%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.45%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.03%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	4.03%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.23%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	3.23%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.42%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.42%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.61%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.61%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.61%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.61%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.61%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.61%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.61%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.81%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.81%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.81%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.81%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.81%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.81%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.81%
Simulated	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2166559005	Simulated microbial communities from Lyon, France	Engineered	Open in IMG/M
2170459002	Grass soil microbial communities from Rothamsted Park, UK - March 2009 direct MP BIO 1O1 lysis 0-21 cm	Environmental	Open in IMG/M
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
2189573000	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis 0-21cm (T0 for microcosms)	Environmental	Open in IMG/M
3300000816	Forest soil microbial communities from Amazon forest - 2010 replicate II A10	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012515	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.7.yng.070610	Host-Associated	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300019878	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m2	Environmental	Open in IMG/M
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental	Open in IMG/M
3300020018	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s2	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031198	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031940	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032003	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
cont_0475.00006740	2166559005	Simulated	MPISQWRFISRNGSPEGHRVEALETHIAALKEVVANAKAEIEQTRQKADALSSQVAEQSAANDKLQAELDNLRAGINAYWQQVVLNLCS
E1_04457000	2170459002	Grass Soil	MTVPSFPQVVNTTMVDTSMTDADPAVALHFARNDSPEGHRVEALETHIAALKEVVANAKAEIEQTRQKADALSRQVGGQSAANDKLQAELDNLRAGINAYWQQVVRNLCN
F62_07238440	2170459010	Grass Soil	MVETSMTDADLAVALHFARNGSPEGHRVEALETHIAALKEVVANAKAEIEQTRQKADALSSQVAEQSAANDKLQAELDNLRAGINAYWQQVVLNLCS
F62_04840770	2170459010	Grass Soil	MVETSMTDADLAVALHFARNGSPEGHRVEALETHIAALKEVVANAKAEIEQTRQKADALLSQVAEQSAANNKLQAELDNLRAGINAYWQQMVRNLCS
N55_03993360	2189573000	Grass Soil	MTVPSFPQVVEPTMVETSMTDADLAVALHFARNGSPEGHRVEALETHIAALKEVVANAKAEIEQTRQKADALSSQLAEQSAANDKLQAELDNLRAGINAYWQQVVLNLCS
AF_2010_repII_A10DRAFT_10191552	3300000816	Forest Soil	VVALHFARVGPPEGHRVEALETQIAALKEAVANAKATNKQGRQEADALSRQMAEQLAPIDKLQVELDKLRAGINAYWQQMVRSHL*
JGI1027J12803_1017018111	3300000955	Soil	HFARNGSPEGHRIEALETQIAALKEVVANAKATIEQRRQNSDVLSSQMAKQLAPNDKLQAELDQLRAGINAYWQQTVRNHF*
Ga0062595_1000643321	3300004479	Soil	MLYSKAGEPWWGAAQVVEHDPGRKTSMTDADLAVALHFARNGSPEGHRVEALETHIAALKEALANAKATIEQWRQEADVLSRQMAEQSAVNNQLQAELDKLRAGINAYWQQVVRNHL*
Ga0062595_1010189741	3300004479	Soil	MTDADLAVALHFARNDSPEGHRVEALETHIAALKEALANAKATIEQRRQEADLLSKQMAEQSAANNQLQAELDKLRAGTNAYWQQVVRNHL*
Ga0062595_1010883771	3300004479	Soil	MTDADLVVALHFARNGSPEGHRVEALETQIAALKEVVANAKATIEQRRQKSDVLPSQMGKQLAPNDKLQAELDQLRAGINAYWQQTVRNHF*
Ga0066395_102891391	3300004633	Tropical Forest Soil	MTDADLVVALHFARNGSPEGHRVEALETQIAALKEVVANAKATIEQRRQESDILPSQMAKQLAPNDKLQAELDQLRAGINAYWQQTVRNHI*
Ga0065705_103449782	3300005294	Switchgrass Rhizosphere	MTAPGFHRSLNTTMVETSMTDADLAVALHFARNGSPDGHRVEALETQIAALKEVVANAKAAIEQRRQEADVLTSQMADQLAANDQLQAELDKLRAAINAYWQQVVRNHF*
Ga0070670_1001764171	3300005331	Switchgrass Rhizosphere	MLYSKAGEPWWGAAQVVEHDPGRKTSMTDGDLAVALHFARNGSPEGHRVEALETHIAALKEALANAKATIEQWRQEADVLSRQMAEQSAVNNQLQAELDKLRAGINAYWQQVVRNHL*
Ga0066388_1004716403	3300005332	Tropical Forest Soil	LVAVLKAGGPRGPPRMTAPRFHRSLNTTMVETSMTDADLAVALHFARNGSPEGHRVEALETHIAALKEALANAKAAIEQRRQEADVLSRQMVEQSVANDQLQAELDKLRAGINAYWQQVVRNHL*
Ga0066388_1012382993	3300005332	Tropical Forest Soil	MTDADLVVALHFARNGSSEGRRVEALESQIAALKEVVANAKAAIEQRRQEAGVEQLAANDQLQAELDKL
Ga0070668_1007159221	3300005347	Switchgrass Rhizosphere	MLYSKAGEPWWGAALVVEHDPGRKTSMTDADLAVALHFARNGSPEGHRVEALETHIAALKEALANAKATIEQWRQEADVLSRQMAEQSAVNNQLQAELDKLRAGINAYWQQVVRNHL*
Ga0070674_1018776242	3300005356	Miscanthus Rhizosphere	MTVPSFPQVVNTTMVETSMTDADLAVALHFARNGSPEGHRVEALETHIAALKEALANAKATIEQWRQEADVLSRQMAEQSAVNNQLQAELDKLRAGINAYWQQVVRNHL*
Ga0070659_1006890391	3300005366	Corn Rhizosphere	MLYSKAGEPWWGAALVVEHDPGRKTSMTDADLAVALHFARNDSPEGHRVEALETHIAALKEALANAKATIEQWRQEADVLSRQMAEQSAVNNQLQAELDKLRAGINAYWQQVVRNHL*
Ga0070711_1009900581	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MTVPSFPQVVNTTMVETSMTDADLAVALHFARNGSPEGHRVEALETHIAALKEVVANAKAEIEQTRQKADALSRQVAGQSAANDKLQAELDNLRAGINAYWQQVVRNLLTPC*
Ga0070693_1014155781	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MLYSKAGEPWWGAALVVEHDPGRKTSMTDADLAVALHFARNGSPEVHRVEALETHIAALKGVVANTKAEIEQTRQKADALSRQVAGQSAANDKLQAELDNLRAGINAYWQQVVRNLCS*
Ga0070665_1002220731	3300005548	Switchgrass Rhizosphere	MLYSKAGEPWWGAALVVEHDPGRKTSMTDADLAVALHFARNGSPEGHRVEALETHIAALKEALANAKATIEQWRQEADVLSRQMAEQSAVNNQLQAELDKLRAGINAYWQQVVRNL
Ga0070665_1013698252	3300005548	Switchgrass Rhizosphere	MTVPSFPQVVNTTMVETSMTDADLAVALHFARNGSPEVHRVEALETHIAALKEVVANTKAEIEQTRQKADALSRQVAGQSAANDKLQAELDNLRAGINAYWQQVVRNLCS*
Ga0066905_1002586714	3300005713	Tropical Forest Soil	MTDADLAVAPHFARNGSPDGHRVEALETQIAELKEVVANAKAAIEQTRQDADALPSEMADQLAVNDQLPAELDNLLAEINAYWQQVVRNHL*
Ga0066905_1004922182	3300005713	Tropical Forest Soil	MTDADLVVALHFARKFSPEGHQVEALETQIAALKEVIANAKAAIEQRRQDADVLPSEMAEQLAVNDQLQAELDKLQAEINAYWQQVVRNHL*
Ga0066905_1011251761	3300005713	Tropical Forest Soil	MTDADLVVALHFARNGSPEGHRVQALETQIAALKEVVANAKATIEQRRQESDILPSQMAKQLAPNDKLQAELDQLRVGINAYWQQTVRSHI
Ga0066903_1001148063	3300005764	Tropical Forest Soil	MTDADLVVALHFARVGPPEGHRVEALETQIAALKETVANAKATNKQGRQEADALSRQMAEQLAPIDKLQAELDKLRAGINAYWQQMVRSHL*
Ga0081455_101915892	3300005937	Tabebuia Heterophylla Rhizosphere	MTDADLVVALHFARKFSPEGHQVEALETQIAALKEVIANAKAAIEQRRQDADVLPSEMAEQLAPIDKLQAELDKLRAEINAYWQQMVRNHL*
Ga0075417_100463552	3300006049	Populus Rhizosphere	MVETSMTDADLAVALHFARNGSPDGHRVEALETQIAALKEVVANAKAAIEQRRQEADVSTSQMADQLAANDQLQAELDKLRAAINAYWQQVVRNHF*
Ga0075422_100468403	3300006196	Populus Rhizosphere	MTAPGFHRSLNTTMVETSMTDADLAVALHFARNGSPDGHRVEALETQIAALKEVVANAKAAIEQRRQEADVSTSQMADQLAANDQLQAELDKLRAAINAYWQQVVRNHF*
Ga0075428_1007607334	3300006844	Populus Rhizosphere	MTDADLVVALHFARNGSPQGHRVEALETQIAPLKEVVANAKAAIEQRRQEAHEQLAANDKLEAELDKLRAGINAYWQQVVRNHF*
Ga0075431_1014535092	3300006847	Populus Rhizosphere	MTDADLAVALHFARNGSPDGHRVEALETQIAALKEVVGNAKAAIEQRRQETDVLTSQMADQLAANDQLQAELDKLRAAINAYWQQVVRNHF*
Ga0075433_106748292	3300006852	Populus Rhizosphere	RNGSPEGHRVETLETQIAALKEVVANAKAPIEQRRQKANVLTSQMAEQLAPNDKLQAELDQLRAGINTYWQQVVRNHF*
Ga0075425_1000817387	3300006854	Populus Rhizosphere	VGAVQVVEHDPGRKTSMTDADLAVALHFVRNGSPEGHRVEALETHIAALKEALANAKATIEQWRQEADVLSRQMAEQSAANNQLQAELDKLRAGINAYWQQVVRNHL*
Ga0075434_1000899863	3300006871	Populus Rhizosphere	MTDADLVVALHFARNGSPEGHRVETLETQIAALKEVVANAKAPIEQRRQKANVLTSQMAEQLAPNDKLQAELDQLRAGINTYWQQVVRNHF*
Ga0075424_1001731031	3300006904	Populus Rhizosphere	NGSPEGHRVETLETQIAALKEVVANAKAPIEQRRQKANVLTSQMAEQLAPNDKLQAELDQLRAGINTYWQQVVRNHF*
Ga0075435_1016099681	3300007076	Populus Rhizosphere	SPEGHRVEALETHIAALKEALANAKATIEQWRQEADVLSRQMAEQSAANNQLQAELDKLRAGINAYWQQVVRNHL*
Ga0111539_111810991	3300009094	Populus Rhizosphere	MTDADLVVALHFARNGSPQGHRVEALETQIAPLKEVVANAKAAIEQRRQEAHEQLAANDKLEAELDKLR
Ga0105245_120243911	3300009098	Miscanthus Rhizosphere	DLAVALHFARNGSPEGHRVEALETHIAALKEALANAKATIEQWRQEADVLSRQMAEQSAVNNQLQAELDKLRAGINAYWQQVVRNHL*
Ga0114129_100704594	3300009147	Populus Rhizosphere	MTDADLVVALHFALNGSPEGHRVETLETQIATLKEVVANAKAAIEQRRQEADVLTSQMAEQLAPNDKRQAELDQLRAGINTYWQQVVRNHF*
Ga0114129_111489282	3300009147	Populus Rhizosphere	MTDADLAVALHFARNGSPDGHRVEALETQIEALKEVVANAKAAIEQRRQETDVLTSQMADQLAANDQLQAELDKLRAAINAY
Ga0105243_104374901	3300009148	Miscanthus Rhizosphere	MTDADLVVALQFARNGSPEGHRVEALETQIAALKEVVANAKATIEQRRQKSDVLPSQMGKQLAPNDKLQAELDQLRAGINAYWQQTVRNHF*
Ga0111538_110853272	3300009156	Populus Rhizosphere	MLYSKAGEPWWGAAQVVEHDPGRKTSMTDGDLAVALHFARNGSPEGHRVEALETHIAALKEALANAKATIEQWRQEADVLSRQMAEQSAVNNQLQA
Ga0105248_109305262	3300009177	Switchgrass Rhizosphere	MLYSKAGEPWWGAALVVEHDPGRKTSMTDADLAVALHFARNGSPEGHRVEALETHIAALKEALANAKATIEQWRQEADVLSRQMAEQSAVNNQLQAELDKLRAGINAYWQQVVRN
Ga0105237_127616921	3300009545	Corn Rhizosphere	AGEPWWGAAQVVAHDPGRKTSMTDGDLAVALHFARNGSPEGHRVEALETHIAALKEALANAKATIEQWRQEADVLSRQMAEQSAVNNQLQAELDKLRAGINAYWQQVVRNHL*
Ga0126374_101919692	3300009792	Tropical Forest Soil	MTDADLVVALHFARNGSPEGHRVEALETQIAALKEVGANAKATIEQRRQESDILPSQMAKQLAPNDKLQAELDQLRVGINAYWQQTVRSHI*
Ga0126380_100014648	3300010043	Tropical Forest Soil	MTDADLVVALHFARNGSPEGHRVQALETQIAALKEVVANAKATIEQRRQESDILPSQMAKQLAPNDKLQAELDQLRVGINAYWQQTVRSHIWL*
Ga0126380_101764802	3300010043	Tropical Forest Soil	MTDVDLVVALHFARNGSPEGHQLEALETQIAALKEVVANAKATIEQRRQESDVLPSQMAEQLAPNDKLQAKLDQLRAGINAYWQQMVRNHF*
Ga0126384_100284323	3300010046	Tropical Forest Soil	MTDADLVVALHFARNGSPEGHRVEALETQIAALKEVVANAKATIEQRRQESDILPSQMPKQLAPNDKLQAELDQLRAGINAYWQQTVRNHI*
Ga0126382_100700512	3300010047	Tropical Forest Soil	MTDADLVVALHFARNGSPEGHRVEALETQIAALKEVVANAKAAIEQRRQKSDVLPSQMAKQLAPNDKLQAELDQLRVGINAYWQQTVRSHI*
Ga0126370_101179452	3300010358	Tropical Forest Soil	METSMTDADLVVALHFARNGSPEGHRVEALETQIAALKEVVANAKATIEQRRQESDILPSQMAKQLAPNDKLQAELDQLRVGINAYWQQTVRSHI*
Ga0126376_100960212	3300010359	Tropical Forest Soil	MTDADLVVALHFARNGSPEGHRVQALETQIAALKEVVANAKATIEQRRQESDSLPSQMAKQLAPNDKLQAELDQLRVGINAYWQQTVRSHIWL*
Ga0126372_101266302	3300010360	Tropical Forest Soil	MTDADLVVALHFARNGSPEGHRVEALETQIAALKEVVANAKATIEQRRQESDILPSQMAKQLAPNDKLQAELDQLRVGINAYWQQTVRNHI*
Ga0126379_101831092	3300010366	Tropical Forest Soil	MTDADLVVALHFARNGSPEGHRVQALETQIAALKEVVANAKATIEQRRQESDILPSQMAKQLAPNDKLQAELDQLRVGINAYWQQTVRSHI*
Ga0126379_116426092	3300010366	Tropical Forest Soil	RPLVETSMTDADLVVALHFARVGPPEGHRVEALETQIAALKEAVANAKATSKQGRQEADALSRQMAEQLAPIDKLQAELDKLRAGINAYWQQMVRSHL*
Ga0134125_105391752	3300010371	Terrestrial Soil	MTVPSFPQVVNTTMVETSMTDADLAVALHFARNGSPEVHRVEALETHIAALKEALANAKATIEQWRQEADVLSRQMAEQSAVNNQLQAELDKLRAGINAYWQQVVRNHL*
Ga0126383_100091805	3300010398	Tropical Forest Soil	MTDADLVVALHFARNGSPEGHRVQALETQIAALKEVVANAKATIEQRRQESDILPSQMAKQLAPNDKLQAELDQLRAGINAYWQQTVRNHI*
Ga0134122_103799492	3300010400	Terrestrial Soil	MLYSKAGEPWWGAAQVVEHDPGRKTSMTDADLAVALHFARNGSPEGHRVEALETHIAALKEALANAKATIEQRRQEADLLSKQMAEQSAANNQLQAELDKLRAGTNAYWQQVVRNHL*
Ga0137376_108939221	3300012208	Vadose Zone Soil	MVETSMTDADLAVALHFARNGSPEGHRVEALETHIAALKEVVANAKAEIEQTRQKADALSRQVAEQSAANNKLQTELDNLRAGINAYWQQV
Ga0157338_10298112	3300012515	Arabidopsis Rhizosphere	MTDADLAVALHFVRNGSPEGHRVEALETHIAALKEALANAKATIEQWRQEADVLSRQMAEQSAVNNQLQAELDKLRAGINAYWQQVVRNHL*
Ga0164298_105147201	3300012955	Soil	MTDADLVVALHFARNGSPEGHRVEALETQIAALKEVVANAKATMEQRRQKSDVLPSQMGKQLAPNDKLQAELDQ
Ga0164303_103182191	3300012957	Soil	MLYSKAGEPWWGAAQVVEHDPGRKTSMTDADLAVALHFVRNGSPEGHRVEALETHIAALKEALANAKATIEQRRQEADLLSKQMAEQSAANNQLQAELDKLRAGINAYWQQVVRNHL*
Ga0164302_115556592	3300012961	Soil	MTDADLAVALHFARNESPEGHRVEALETHIAALKEALANAKATIQQWRQEADVLSRQMAEQSAANNQLQAELDKLRAGTNAYWQQVVRNHL*
Ga0164309_112054561	3300012984	Soil	MTDADLAVALHFARNDSPEGHRVEALETHIAALKEALANAKATIEQWRQEADVLSRQMAEQSAANNQLQAELDKLRAGINAYWQQVVRNHL*
Ga0164304_107976191	3300012986	Soil	MTDADLVVALHFARNGSPEGHRVEALETQIAALKEVVANAKAEIEQTRQKADALSRQVAGQSAANDKLQAELDNLRAGINAYWQQVVRNLCS*
Ga0163162_109683142	3300013306	Switchgrass Rhizosphere	HFARNGSPEGHRVEALETHIAALKEALANAKATIEQWRQEADVLSRQMAEQSAVNNQLQAELDKLRAGINAYWQQVVRNHL*
Ga0163162_122395091	3300013306	Switchgrass Rhizosphere	MTDADLVVALHFARNGSPEGHRVEALETHIAALKEVVANAKAEIEQTRQKADALSRQAAGQSAANDKLQAELDNLRVGHRRFPIGGADGSNL*
Ga0132258_111991682	3300015371	Arabidopsis Rhizosphere	MTDADLVVALHFARNGSPEGHRVEALETQIAALKEVVANAKATIEQRRQKSDVLPSQMAKQLAPNDKLQAELDQLRAGINAYWQQTVRNHF*
Ga0132258_138793942	3300015371	Arabidopsis Rhizosphere	MTVPSFPQVVNTTMVETSMTDADLAVALHFARNGSPEGHRVEALETHIAALKEVVANAKAEIEQTRQKADALSRQVAGQSAANDKLQAELDNLRAGINAYWQQVVRNLCS*
Ga0132255_1002353833	3300015374	Arabidopsis Rhizosphere	MTDADLAVALHFVRNGSPEGHRVEALETHIAALKEALANAKATIEQWRQEADVLSRQMAEQSAANNQLQAELDKLRAGINAYWQQVVRNHL*
Ga0132255_1010998592	3300015374	Arabidopsis Rhizosphere	RNGSPEGHRVEALETHIAALKEVVANAKAEIEQTRQKADALSRQVAGQSAANDKLQAELDNLRAGINAYWQQVVRNLCS*
Ga0132255_1062619041	3300015374	Arabidopsis Rhizosphere	TDADLAVALHFARNDSPEGHRVEALETQIAALKEVVANAKATIEQRRQKSDVLPSQMGKQLAPNDKLQAELDQLRAGINAYWQQTVRNHF*
Ga0184608_103964331	3300018028	Groundwater Sediment	MTDADLAVALHFARNGSPEGHRVEALETHIAALKEVVANAKAEIEQTRQKADALSRQVAGQSAANDKLQAELDNLRAGINAYWQQVVLNLCS
Ga0184611_10152861	3300018067	Groundwater Sediment	MVETSMTDADLAVALHFARNGSPEGHRVEALETHIAALKEVVANAKAEIEQTRQKADALSSQVAEQSAANDKLQAELDNLRAGINAYWQQVVRNLCS
Ga0184624_100281272	3300018073	Groundwater Sediment	MVETSMTDADLAVALHFARNGSPEGHRVEALETHIAALKEVVANAKAEIEQTRQKADALSRQVAEQSAANDKLQAELDNLRAGINAYWQQVVRNLCS
Ga0184625_100951832	3300018081	Groundwater Sediment	MVETSMTDADLAVALHFARNGSPEGHRVEALETHIAALKEVVANAKAEIEQTRQKADALSRQVAGQSAANDKLQAELDNLRAGINAYWQQVVRNLCS
Ga0193715_11200941	3300019878	Soil	SRRFHRSLNTTMVETSMTDADLAVALHFARNGSPEGHRVEALETHIAALKEVVANAKAEIEQTRQKADALSSQVAEQSAANDKLQAELDNLRAGINAYWQQVVLNLCS
Ga0193735_11207612	3300020006	Soil	MVETSMTDADLAVALHFARNGSPEGHRVEALETHIAALKEVVANAKAEIEQTCQKADALSRQVAEQSAANDKLQAELDNLRAGINVYWQQVVRNHL
Ga0193721_11025711	3300020018	Soil	MTDADLAVALHFARNGSPEGHRVEALETHIAALKEVVANAKAEIEQTCQKADALSRQVAEQSAANDKLQAELDNLRAGINVYWQQVVRNHL
Ga0210381_100693672	3300021078	Groundwater Sediment	RRFHRSLNTTMVETSMTDADLAVALHFARNGSPEGHRVEALETHIAALKEVVANAKAEIEQTRQKADALSSQVAEQSAANDKLQAELDNLRAGINAYWQQVVRNLCS
Ga0193719_101947922	3300021344	Soil	MTVPSFPQVVNTTMVETSMTDADLAVALHFARNGSPEGHRVEALETHIAALKEVVANAKAEIEQTRQKADALSSQVAEQSAANDKLQAELDNLRAGINAYWQQVVLNLCS
Ga0126371_120617512	3300021560	Tropical Forest Soil	MTDADLVVALHFARNGSPEGHRVEALETQIAALKEVVANAKAAIEQRRQESDILPSQMAKQLAPNDKLQAELDQLRAGINAYWQQTVRNHI
Ga0222623_100109292	3300022694	Groundwater Sediment	MVETSMTDADLAVALHFARNGSPEGHRVEALETHIAALKEVVANAKAEIEQTRQKADALSRQVAEQSAANNKLQTELDNLRAGINAYWQQVVRNLCS
Ga0222622_105402321	3300022756	Groundwater Sediment	MVETSMTDADLAVALHFARNGSPEGHRVEALETHIAALKEVVANAKAEIEQTRQKADALSRQVAGQSAANDKLQAELDNLRAGINA
Ga0207710_101721721	3300025900	Switchgrass Rhizosphere	MLYSKAGEPWWGAAQVVEHDPGRKTSMTDGDLAVALHFARNGSPEGHRVEALETHIAALKEALANAKATIEQWRQEADVLSRQMAEQSAVNNQLQAELDKLRAGINAYWQQVVRNHL
Ga0207663_109817992	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MTVPSFPQVVNTTMVETSMTDADLAVALHFARNGSPEGHRVEALETHIAALKEVVANAKAEIEQTRQKADALSRQVAGQSAANDKLQAELDNLRAGINAYWQQVVRNLLTPC
Ga0207690_107860552	3300025932	Corn Rhizosphere	VALHFARNGSPEGHRVEALETHIAALKEALANAKATIEQWRQEADVLSRQMAEQSAVNNQLQAELDKLRAGINAYWQQVVRNHL
Ga0207683_101306692	3300026121	Miscanthus Rhizosphere	MLYSKAGEPWWGAAQVVEHDPGRKTSMTDADLAVALHFARNGSPEGHRVEALETHIAALKEALANAEATIEQWRQEADVLSRQMAEQSAVNNQLQAELDKLRAGINAYWQQVVRNHL
Ga0209814_100431313	3300027873	Populus Rhizosphere	MVETSMTDADLAVALHFARNGSPDGHRVEALETQIAALKEVVANAKAAIEQRRQEADVSTSQMADQLAANDQLQAELDKLRAAINAYWQQVVRNHF
Ga0209465_101364992	3300027874	Tropical Forest Soil	MTDADLVVALHFARNGSPEGHRVEALETQIAALKEVVANAKATIEQRRQESDILPSQMAKQLAPNDKLQAELDQLRAGINAYWQQTVRNHI
Ga0209382_105284272	3300027909	Populus Rhizosphere	MTDADLVVALHFARNGSPQGHRVEALETQIAPLKEVVANAKAAIEQRRQEAHEQLAANDKLEAELDKLRAGINAYWQQVVRNHF
Ga0268266_103038813	3300028379	Switchgrass Rhizosphere	MLYSKAGEPWWGAALVVEHDPGRKTSMTDADLAVALHFARNGSPEGHRVEALETHIAALKEALANAKATIEQWRQEADVLSRQMAEQSAVNNQLQAELDKLR
Ga0268264_115291832	3300028381	Switchgrass Rhizosphere	MLYSKAGEPWWGAAQVVEHDPGRKTSMTDADLAVALHFARNGSPEGHRVEALETHIAALKEALANAKATIEQWRQEADVLSRQMAEQSAVNNQLQAELDKLRAGI
Ga0307295_101271181	3300028708	Soil	MTDADLAVALHFARNGSPEGHRVEALETHIAALKEVVANAKAEIEQTRQKADALSSQVAEQSAANDKLQAELDNLRAGINAYWQQVVLNLCS
Ga0307280_103970332	3300028768	Soil	LHFARNGSPEGHRVEALETHIAALKEVVANAKAEIEQTRQKADALSRQVAEQSAANNKLQTELDNLRAGINAYWQQVVRNLCS
Ga0307323_102159971	3300028787	Soil	MTDADLAVALHFARNGSPEGHRVEALETHIAALKEVVANAKAEIEQTCQKADALSRQVAEQSAANDKLQAELDNLRAGINAYWQQVVLNLCS
Ga0307299_100277711	3300028793	Soil	MVETSMTDADLAVALHFARNGSPEGHRVEALETHIAALKEVVANAKAEIEQTRQKADALSSQVAEQSAANDKLQAELDNLRAGINAYWQQVV
Ga0307299_101139122	3300028793	Soil	MTDADLAVALHFARNGSPEGHRVEALETHIAALKEVVANAKAEIEQTRQKADALSRQVAEQSAANDKLQAELDNLRAGINAYWQQVVRNLCS
Ga0307292_101384672	3300028811	Soil	SLNTTMVETSMTDADLAVALHFARNGSPEGHRVEALETHIAALKEVVANAKAEIEQTRQKADALSSQVAEQSAANDKLQAELDNLRAGINAYWQQVVLNLCS
Ga0307302_101242912	3300028814	Soil	MVETSMTDADLAVALHFARNGSPEGHRVEALETHIAALKEVVANAKAEIEQTRQKADALSRQVAEQSAANDKLQAELDNLR
Ga0307302_104857181	3300028814	Soil	MTDADLAVALHFARNSSPEGHRVEALETHIAALKEVVANAKAEIEQTCQKADALSRQVAEQSAANDKLQAELDNLRAGINVYWQQVVRNHL
Ga0307296_100914531	3300028819	Soil	MTDADLAVALHFARNGSPEGHRVEALETHIAALKEVVANAKAEIEQTRQKADALSSQVAEQSAANDKLQAELDNLRAGINAYWQQVVRNLCS
Ga0307296_101630571	3300028819	Soil	MVETSMTDADLAVALHFARNGSPEGHRVEALETHIAALKEVVANAKAEIEQTRQKADALSRQVAEQSAANNKLQTELDNLRAGINAYWQQVVR
Ga0307310_101668942	3300028824	Soil	MTDADLAVALHFARNGSPEGHRVEALETHIAALKEVVANAKAEIEQTRQKADALSRQVAEQSAANNKLQTELDNLRAGINAYWQQVVRNLCS
Ga0307278_100384681	3300028878	Soil	MTMVETSMTDADLAVALHFARNGSPEGHRVEALETHIAALKEVVANAKAEIEQTRQKADALSRQVAEQSAANNKLQTELDNLRAGINAYWQQVVRNLCS
Ga0307498_100290911	3300031170	Soil	MTVPSFPQVVNTTMVETSMTDADLAVALHFARNGSPEGHRVEALETHIAALKEVVANAKAEIEQTRQKADALSRQVAGQSAANDKLQAELDNLRAGINAYWQQVVRNLCS
Ga0307498_100321883	3300031170	Soil	MTDADLAVALHFARNGSPEGHRVEALETHIAALKEVVANAKAEIEQTRQKADALSRQLAGQSAANDKLQAELDNLRAGINAYWQQVVRNLCS
Ga0307498_100330341	3300031170	Soil	ETSMTDADLAVALHFARNGSPEGHRVEALETHIAALKEVVANAKAEIEQTRQKADALSRQVAEQSAANDKLQAELDNLRAGINAYWQQVVLNLCS
Ga0307499_102168162	3300031184	Soil	MTDADLAVALHFARNGSPEGHRVEALETHIAALKEVVANAKAEIEQTRQKADALSSQVAEKSAANDKLQAELDNLRAGINAYWQQVVRNHS
Ga0307500_100434621	3300031198	Soil	ETSMTDADLAVALHFARNGSPEGHRVEALETHIAALKEVVANAKAEIEQTRQKADALSRQLAGQSAANDKLQAELDNLRAGINAYWQQVVLNLCS
Ga0307497_100061412	3300031226	Soil	MVETSMTDADLAVALHFARNGSPEGHRVEALETHIAALKEVVANAKAEIEQTRQKADALSSQVAEKSAANDKLQAELDNLRAGINAYWQQVVLNLCS
Ga0308194_103395852	3300031421	Soil	NTTMVETSMTDADLAVALHFARNSSPEGHRVEALETHIAALKEVVANAKAEIEQTCQKADALSRQVAEQSAANDKLQAELDNLRAGINAYWQQVVLNLCS
Ga0170819_173610701	3300031469	Forest Soil	MTDADLAVALHFARNGSPEGHRVEALETYIAALKEIVANAKAEIEQTRQKADALSSQVAEQSAANDKLQAELDNLRAGINAYWQQVVLNLCS
Ga0310887_101427832	3300031547	Soil	MTDADLAVALHFVRNGSPEGHRVEALETHIAALKEALANAKATIEQWRQEADVLSRQMAEQSAANNQLQAELDKLRAGINAYWQQVVRNHL
Ga0310886_101001952	3300031562	Soil	VGAVQVVEHDPGRKTSMTDADLAVALHFVRNGSPEGHRVEALETHIAALKEALANAKATIEQWRQEADVLSRQMAEQSAANNQLQAELDKLRAGINAYWQQVVRNHL
Ga0310907_101178341	3300031847	Soil	VGAVQVVEHDPGRKTSMTDADLAVALHFARNDSPEGHRVEALETHIAALKEALANAKATIEQRRQEADLLSKQMAEQSAANNQLQAELDKLRAGTNAYWQQVVRNHL
Ga0310904_111753462	3300031854	Soil	RNGLPEGHRVEALETHIAALKEVVANAKAEIEQTRQKADALSRQVAGQSAANDKLQAELDNLRAGINAYWQQVVRNLCS
Ga0310892_101103372	3300031858	Soil	VGAVQVVEHDPGRKTSMTDADLAVALHFARNGSPEGHRVEALETHIAALKEALANAKATIEQWRQEADVLSRQMAEQSAANNQLQAELDKLRAGINAYWQQVVRNHL
Ga0310900_102278192	3300031908	Soil	MTDADLAVALHFARNDSPEGHRVEALETHIAALKEALANAKATIEQRRQEADLLSKQMAEQSAANNQLQAELDKLRAGINAYWQQVVRNHL
Ga0310901_101803221	3300031940	Soil	MTDADLAVALHFVRNGSPEGHRVEALETHIAALKEALANAKATIEQRRQEADLLSKQMAEQSAANNQLQAELDKLRAGTNAYWQQVVRNHL
Ga0310903_101182931	3300032000	Soil	MTDADLAVALHFARNDSPEGHRVEALETHIAALKEALANAKATIEQRRQEADLLSKQMAEQSAANNQLQAELDKLRAGTNAYWQQVVRNHL
Ga0310897_102134802	3300032003	Soil	MTDADLAVALHFARNGSPEGHRVEALETHIAALKEVVANAKAEIEQTRQKADALSRQVAGQSAANDKLQAELDNLRA
Ga0310902_110073301	3300032012	Soil	MTDADLAVALHFARNGSPEGHRVEALETHIAALKEALANAKATIEQRRQEADLLSKQMAEQSAANNQLQAELDKLRAGINAYWQQVVRNHL
Ga0307471_1020961401	3300032180	Hardwood Forest Soil	MTDADLVVALHFARNGSPEGHRVEALETQIAALKEVVANAKATIEQRRQKSDVLPSQMGTQLAPNDKLQAELDQLRAGINAYWQQTVRNHF
Ga0310896_101499841	3300032211	Soil	VGAVQVVEHDPGRKTSMTDGDLAVALHFARNGSPEGHRVEALETHIAALKEALANAKATIEQWRQEADVLSRQMAEQSAVNNQLQAELDKLRAGINAYWQQVVRNHL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F069028

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences