Metagenome / Metatranscriptome Family F069078

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F069078
Family Type	Metagenome / Metatranscriptome
Number of Sequences	124
Average Sequence Length	49 residues
Representative Sequence	VTQLGSPATESGPDDSARRQAARGSRLARRRRALLGVGIAAALLAVG
Number of Associated Samples	107
Number of Associated Scaffolds	124

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	97.58 %
% of genes near scaffold ends (potentially truncated)	98.39 %
% of genes from short scaffolds (< 2000 bps)	87.90 %
Associated GOLD sequencing projects	103
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (66.935 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (29.839 % of family members)
Environment Ontology (ENVO)	Unclassified (33.065 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (43.548 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 44.00% β-sheet: 0.00% Coil/Unstructured: 56.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 124 Family Scaffolds
PF00072	Response_reg	29.03
PF00486	Trans_reg_C	12.10
PF06224	HTH_42	4.03
PF03595	SLAC1	3.23
PF13581	HATPase_c_2	3.23
PF13796	Sensor	2.42
PF14417	MEDS	1.61
PF01569	PAP2	1.61
PF12323	HTH_OrfB_IS605	1.61
PF00005	ABC_tran	1.61
PF07282	OrfB_Zn_ribbon	1.61
PF00384	Molybdopterin	1.61
PF05532	CsbD	0.81
PF00196	GerE	0.81
PF06736	TMEM175	0.81
PF13271	DUF4062	0.81
PF07819	PGAP1	0.81
PF14329	DUF4386	0.81
PF00999	Na_H_Exchanger	0.81
PF02518	HATPase_c	0.81
PF05345	He_PIG	0.81
PF13367	PrsW-protease	0.81
PF00441	Acyl-CoA_dh_1	0.81
PF10009	DUF2252	0.81
PF04185	Phosphoesterase	0.81
PF01814	Hemerythrin	0.81

COG ID	Name	Functional Category	% Frequency in 124 Family Scaffolds
COG3214	DNA glycosylase YcaQ, repair of DNA interstrand crosslinks	Replication, recombination and repair [L]	4.03
COG1275	Tellurite resistance protein TehA and related permeases	Defense mechanisms [V]	3.23
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	0.81
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	0.81
COG0596	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold	Coenzyme transport and metabolism [H]	0.81
COG1075	Triacylglycerol esterase/lipase EstA, alpha/beta hydrolase fold	Lipid transport and metabolism [I]	0.81
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.81
COG2267	Lysophospholipase, alpha-beta hydrolase superfamily	Lipid transport and metabolism [I]	0.81
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	0.81
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	0.81
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	0.81
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	0.81
COG3548	Uncharacterized membrane protein	Function unknown [S]	0.81
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	66.94 %
Unclassified	root	N/A	33.06 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	66.94 %
Unclassified	root	N/A	33.06 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	66.94 %
Unclassified	root	N/A	33.06 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	62.90 %
Unclassified	root	N/A	33.06 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	62.10 %
Unclassified	root	N/A	33.06 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	52.42 %
Unclassified	root	N/A	33.06 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	1.61 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.06 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	29.03 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	4.03 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	2.42 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	2.42 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1.61 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.61 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	1.61 %
Catenulisporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales	0.81 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.06 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	29.03 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	4.03 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	2.42 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	2.42 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → environmental samples	1.61 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	1.61 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.61 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.81 %
Catenulisporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.06 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	29.03 %
Actinoplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	4.03 %
uncultured Acidimicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → environmental samples → uncultured Acidimicrobiales bacterium	1.61 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	1.61 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.61 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.61 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.81 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	0.81 %
Catenulisporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.06 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	29.03 %
Actinoplanes octamycinicus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes octamycinicus	4.03 %
uncultured Acidimicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → environmental samples → uncultured Acidimicrobiales bacterium	1.61 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.61 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.61 %
Amycolatopsis saalfeldensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → Amycolatopsis saalfeldensis	0.81 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.81 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	0.81 %
Catenulisporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003505\|JGIcombinedJ51221_10183104	Not Available	849	Open in IMG/M
3300003505\|JGIcombinedJ51221_10298659	Not Available	655	Open in IMG/M
3300005177\|Ga0066690_10535965	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	785	Open in IMG/M
3300005335\|Ga0070666_10059471	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2584	Open in IMG/M
3300005363\|Ga0008090_15573913	Not Available	1144	Open in IMG/M
3300005435\|Ga0070714_101598589	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	637	Open in IMG/M
3300005435\|Ga0070714_102253273	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	530	Open in IMG/M
3300005437\|Ga0070710_10623628	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	753	Open in IMG/M
3300005439\|Ga0070711_100814765	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	792	Open in IMG/M
3300005445\|Ga0070708_101459377	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	638	Open in IMG/M
3300005467\|Ga0070706_100050508	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3838	Open in IMG/M
3300005471\|Ga0070698_101715204	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	581	Open in IMG/M
3300005541\|Ga0070733_10264646	Not Available	1132	Open in IMG/M
3300005553\|Ga0066695_10390667	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	865	Open in IMG/M
3300005574\|Ga0066694_10581760	Not Available	521	Open in IMG/M
3300005718\|Ga0068866_10444254	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	846	Open in IMG/M
3300005764\|Ga0066903_102196185	All Organisms → cellular organisms → Bacteria	1064	Open in IMG/M
3300005764\|Ga0066903_103249860	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes octamycinicus	879	Open in IMG/M
3300005834\|Ga0068851_10112130	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1457	Open in IMG/M
3300005952\|Ga0080026_10154939	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	664	Open in IMG/M
3300006028\|Ga0070717_11206386	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	688	Open in IMG/M
3300006050\|Ga0075028_100450752	Not Available	744	Open in IMG/M
3300006176\|Ga0070765_101447115	Not Available	647	Open in IMG/M
3300006176\|Ga0070765_101639647	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	605	Open in IMG/M
3300006176\|Ga0070765_102159835	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	520	Open in IMG/M
3300006358\|Ga0068871_100070363	Not Available	2876	Open in IMG/M
3300006755\|Ga0079222_10037041	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2148	Open in IMG/M
3300006755\|Ga0079222_11283055	Not Available	665	Open in IMG/M
3300006903\|Ga0075426_11498844	Not Available	513	Open in IMG/M
3300010048\|Ga0126373_13280565	Not Available	504	Open in IMG/M
3300010343\|Ga0074044_10081555	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2185	Open in IMG/M
3300010358\|Ga0126370_11236858	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	696	Open in IMG/M
3300010358\|Ga0126370_12503962	Not Available	514	Open in IMG/M
3300010360\|Ga0126372_10310610	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → environmental samples → uncultured Acidimicrobiales bacterium	1391	Open in IMG/M
3300010376\|Ga0126381_100191959	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2723	Open in IMG/M
3300010399\|Ga0134127_13560449	Not Available	511	Open in IMG/M
3300012078\|Ga0153999_1092144	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300012285\|Ga0137370_10255733	Not Available	1038	Open in IMG/M
3300012357\|Ga0137384_10376052	Not Available	1175	Open in IMG/M
3300012977\|Ga0134087_10402885	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	667	Open in IMG/M
3300014326\|Ga0157380_10425954	Not Available	1267	Open in IMG/M
3300015372\|Ga0132256_101939488	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	696	Open in IMG/M
3300016294\|Ga0182041_10851048	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	817	Open in IMG/M
3300016319\|Ga0182033_11411541	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes octamycinicus	627	Open in IMG/M
3300016341\|Ga0182035_10903650	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	779	Open in IMG/M
3300016404\|Ga0182037_11657796	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	569	Open in IMG/M
3300016404\|Ga0182037_11900254	Not Available	533	Open in IMG/M
3300016445\|Ga0182038_11408847	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	624	Open in IMG/M
3300017924\|Ga0187820_1226322	Not Available	592	Open in IMG/M
3300017937\|Ga0187809_10009691	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3267	Open in IMG/M
3300017970\|Ga0187783_10161139	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1652	Open in IMG/M
3300017994\|Ga0187822_10111877	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	844	Open in IMG/M
3300018037\|Ga0187883_10563436	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	589	Open in IMG/M
3300020582\|Ga0210395_10975825	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	628	Open in IMG/M
3300021401\|Ga0210393_10581061	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	915	Open in IMG/M
3300021401\|Ga0210393_11405489	Not Available	557	Open in IMG/M
3300021401\|Ga0210393_11640032	Not Available	509	Open in IMG/M
3300021403\|Ga0210397_11228594	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	582	Open in IMG/M
3300021474\|Ga0210390_11182278	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	618	Open in IMG/M
3300021478\|Ga0210402_10393706	Not Available	1286	Open in IMG/M
3300021560\|Ga0126371_12139616	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300022521\|Ga0224541_1038513	Not Available	517	Open in IMG/M
3300025908\|Ga0207643_10791838	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	614	Open in IMG/M
3300025922\|Ga0207646_10707678	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	900	Open in IMG/M
3300025925\|Ga0207650_10335033	Not Available	1242	Open in IMG/M
3300026088\|Ga0207641_12505505	Not Available	514	Open in IMG/M
3300026320\|Ga0209131_1254834	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	698	Open in IMG/M
3300026557\|Ga0179587_10107676	Not Available	1695	Open in IMG/M
3300027030\|Ga0208240_1000157	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7252	Open in IMG/M
3300027096\|Ga0208099_1016943	All Organisms → cellular organisms → Bacteria	1006	Open in IMG/M
3300027765\|Ga0209073_10132785	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes octamycinicus	906	Open in IMG/M
3300027867\|Ga0209167_10038810	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	2310	Open in IMG/M
3300027895\|Ga0209624_10131351	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → Amycolatopsis saalfeldensis	1649	Open in IMG/M
3300027908\|Ga0209006_10450392	Not Available	1078	Open in IMG/M
3300028879\|Ga0302229_10091470	Not Available	1450	Open in IMG/M
3300028906\|Ga0308309_11397875	Not Available	600	Open in IMG/M
3300029882\|Ga0311368_10333758	Not Available	1137	Open in IMG/M
3300030007\|Ga0311338_10984364	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	820	Open in IMG/M
3300030043\|Ga0302306_10337496	Not Available	577	Open in IMG/M
3300031546\|Ga0318538_10542988	Not Available	630	Open in IMG/M
3300031668\|Ga0318542_10348894	Not Available	761	Open in IMG/M
3300031668\|Ga0318542_10742661	Not Available	514	Open in IMG/M
3300031682\|Ga0318560_10823799	Not Available	501	Open in IMG/M
3300031713\|Ga0318496_10438156	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	722	Open in IMG/M
3300031719\|Ga0306917_11594258	Not Available	501	Open in IMG/M
3300031724\|Ga0318500_10319180	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	763	Open in IMG/M
3300031744\|Ga0306918_10938622	All Organisms → cellular organisms → Bacteria → Terrabacteria group	673	Open in IMG/M
3300031747\|Ga0318502_10403721	Not Available	813	Open in IMG/M
3300031765\|Ga0318554_10325873	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	874	Open in IMG/M
3300031768\|Ga0318509_10524290	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes octamycinicus	661	Open in IMG/M
3300031768\|Ga0318509_10640877	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	591	Open in IMG/M
3300031779\|Ga0318566_10065395	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes octamycinicus	1750	Open in IMG/M
3300031779\|Ga0318566_10529859	Not Available	576	Open in IMG/M
3300031819\|Ga0318568_10732209	Not Available	614	Open in IMG/M
3300031821\|Ga0318567_10035965	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2495	Open in IMG/M
3300031835\|Ga0318517_10202935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	893	Open in IMG/M
3300031860\|Ga0318495_10382011	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	622	Open in IMG/M
3300031879\|Ga0306919_10195475	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1501	Open in IMG/M
3300031893\|Ga0318536_10016327	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3293	Open in IMG/M
3300031896\|Ga0318551_10929738	Not Available	508	Open in IMG/M
3300031910\|Ga0306923_11738340	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	643	Open in IMG/M
3300031912\|Ga0306921_10940346	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales	979	Open in IMG/M
3300031945\|Ga0310913_10181142	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1467	Open in IMG/M
3300031945\|Ga0310913_10906162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	620	Open in IMG/M
3300032008\|Ga0318562_10014055	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4032	Open in IMG/M
3300032035\|Ga0310911_10355884	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	846	Open in IMG/M
3300032055\|Ga0318575_10174215	Not Available	1075	Open in IMG/M
3300032067\|Ga0318524_10042878	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2132	Open in IMG/M
3300032067\|Ga0318524_10410169	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	707	Open in IMG/M
3300032090\|Ga0318518_10008078	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4234	Open in IMG/M
3300032091\|Ga0318577_10041019	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2044	Open in IMG/M
3300032091\|Ga0318577_10418659	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	640	Open in IMG/M
3300032205\|Ga0307472_100785022	All Organisms → cellular organisms → Bacteria	868	Open in IMG/M
3300032783\|Ga0335079_11647669	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	629	Open in IMG/M
3300032892\|Ga0335081_11851437	Not Available	650	Open in IMG/M
3300032893\|Ga0335069_11662594	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	682	Open in IMG/M
3300032895\|Ga0335074_10466754	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1329	Open in IMG/M
3300032896\|Ga0335075_11683063	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	517	Open in IMG/M
3300032954\|Ga0335083_11260178	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	571	Open in IMG/M
3300032955\|Ga0335076_11569992	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	546	Open in IMG/M
3300033158\|Ga0335077_11547939	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → environmental samples → uncultured Acidimicrobiales bacterium	633	Open in IMG/M
3300033289\|Ga0310914_11659828	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	543	Open in IMG/M
3300033289\|Ga0310914_11715309	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	532	Open in IMG/M
3300034820\|Ga0373959_0183766	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	545	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.32%
Host-Associated	Host-Associated	9.68%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	86.29%
Plants	Host-Associated → Plants	8.87%
Aquatic	Environmental → Aquatic	4.03%
Fungi	Host-Associated → Fungi	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	82.26%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.84%
Peat	Environmental → Terrestrial → Peat	4.03%
Freshwater	Environmental → Aquatic → Freshwater	3.23%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.23%
Sediment	Environmental → Aquatic → Sediment	0.81%
Roots	Host-Associated → Plants → Roots	0.81%
Mycelium	Host-Associated → Fungi → Mycelium	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	56.45%
Loam	Environmental → Terrestrial → Soil → Loam	16.94%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.87%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	4.03%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.23%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.23%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.23%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.61%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.81%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.81%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	39.52%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	10.48%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.68%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	8.06%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.26%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	4.03%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.23%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.23%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.23%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.42%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.42%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.61%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.81%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.81%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.81%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.81%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.81%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	29.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.87%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	6.45%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.65%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.84%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.84%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.23%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	3.23%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.42%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.42%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.42%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.61%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.61%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.61%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.61%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.61%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.81%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.81%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.81%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.81%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.81%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.81%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.81%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.81%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.81%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.81%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.81%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.81%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.81%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.81%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.81%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005952	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012078	Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC083 MetaG	Host-Associated	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022521	Peat soil microbial communities from Stordalen Mire, Sweden - 717 E3 20-24	Environmental	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027030	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF041 (SPAdes)	Environmental	Open in IMG/M
3300027096	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF043 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028879	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_3	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029882	III_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030043	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_1	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300034820	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ51221_101831042	3300003505	Forest Soil	VTQVGSPATESGKGGSGGDESAGGQRAVRGSRLARRRRVLL
JGIcombinedJ51221_102986591	3300003505	Forest Soil	VTEPGSPPAESGGGLAVRGSRLSRRRRVLLGIGIAAALLAIGGLVG
Ga0066690_105359652	3300005177	Soil	VTQLGSPATESGHGPDRGSGPPAVRGSRLARRRRVLLGVGIAAALLAV
Ga0070666_100594713	3300005335	Switchgrass Rhizosphere	VTQLGSPATDSGPGPDRGSGSGPPAGRGSRLARRRRLLLGVGIAAALLAV
Ga0008090_155739131	3300005363	Tropical Rainforest Soil	VTQLGSPATESGSDDSARRQAARGSRLARRRRALLGVGIAAALLAVGGLIGASFV
Ga0070714_1015985893	3300005435	Agricultural Soil	VTQLGSPATESGPGDGGRRAVRGSRLARRRRVLFWAAGGAALLAIGGLI
Ga0070714_1022532731	3300005435	Agricultural Soil	VTQLGSMATASGPDDGSRRQAMRGSRLARRRRVLIGVGIAAALLAIGGLIGA
Ga0070710_106236281	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	VTRPGSPATESDPRDHDRQAAAGSRLARRRRALFWVAGGAALLAIGGLIG
Ga0070711_1008147651	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	VTQLGSPATESGHGPDRGSGPPAVRGSRLARRRRVLLGVGIAAALLAVGG
Ga0070708_1014593771	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VTQLGSPATESGAGGSSDSDGGRRQAVRGSRLARRRRVLLAVGIA
Ga0070706_1000505085	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	VTQLGSPATESGPGPGGGGPPSVRGSRLARRRRVLLGVGIAGALLAVG
Ga0070698_1017152042	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VTQLGAPATDSGPDGGIGPPAVRGSRLARRRRVLLGVGIA
Ga0070733_102646462	3300005541	Surface Soil	MAGVTGTYYGAVTQLGSMATDSGQDDGSRRAAMRGSRLARRRRVLIGVGIAAALLAIGG*
Ga0066695_103906672	3300005553	Soil	VTQLGSPATDSGPGPGSGPPAVRGSRLARRRHVLLGVGIAAALLAVGGLVGAS
Ga0066694_105817601	3300005574	Soil	VTQLGPAATQSSPSDHGRQAVRGSRLARRRRALFWVAGGAALL
Ga0068866_104442542	3300005718	Miscanthus Rhizosphere	VTQLGSPATDSGPGPDRGSGSGPPAGRGSRLARRRRLLLG
Ga0066903_1021961851	3300005764	Tropical Forest Soil	VTQLGSPETQSGPSDHGRQAVRGSRLARRRRALFWMAGGAALLAIGGLIGSSFVK
Ga0066903_1032498602	3300005764	Tropical Forest Soil	VTQLGSPATESGPGDPGRQAVRGSRLARRRRALFWVAGGAALLAIGGL
Ga0068851_101121303	3300005834	Corn Rhizosphere	VTQLGSPATDSGPGPDRGSGSGPPAVRGSRLARRRRLLLGVGIAAALLAVG
Ga0080026_101549391	3300005952	Permafrost Soil	VAHLGSPATESDASDSGQQAMRGSRLARRRRALLGVGIAAALLAVGGLIGASFV
Ga0070717_112063861	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VTQLGSPATESGHGPDRGSGPPAVRGSRLARRRRVLLGVGIAAALLA
Ga0075028_1004507523	3300006050	Watersheds	VTQLGSAATESSPGDSGRQAVRGSRLARRRRVLFWVAGGAALLAIGG
Ga0070765_1014471152	3300006176	Soil	VTQLGSPARESSPGDGGWRATRGSRLARRRRVLVEIGIAAALLAVGGLIGASFVKSP
Ga0070765_1016396471	3300006176	Soil	VTQLGSPATESGPDDSARRQAARGSRLARRRRALLGVGIAAALLAVG
Ga0070765_1021598352	3300006176	Soil	MACEASEDLVTQLGSPATESGRGDSGREVVRGSRLARRRRVLLGV
Ga0068871_1000703631	3300006358	Miscanthus Rhizosphere	VTQLGPPATDRGPGDGGGRQLVHGSRLTRRRRVLLGVGIAAALLA
Ga0079222_100370413	3300006755	Agricultural Soil	VTQLGSPATDSGPGPDRGSGSGPPAVRGSRLARRRRLLLGVGIAAALLAVGGLIGASFVK
Ga0079222_112830551	3300006755	Agricultural Soil	VTRLGSPATESSPNDQGRPAVRGSRLARRRRALFWVAGVAALLAIGG
Ga0075426_114988441	3300006903	Populus Rhizosphere	VTQLGSPATESSPGGPGRQAVRGSRLARRRRALFWVAGGAALLAI
Ga0126373_132805651	3300010048	Tropical Forest Soil	VTQLGAPATESSPGDPGRQAVRGSRLARRRRALFWVAGGAALLAIGGLV
Ga0074044_100815551	3300010343	Bog Forest Soil	VTQLGSPATQSGRGDGGGRQAVRGSRLTRRRRALLGAGIAAALL
Ga0126370_112368581	3300010358	Tropical Forest Soil	MTRPGSPATESAASGHGRQVVRGSRLARRRRVLFWVAGGAALL
Ga0126370_125039621	3300010358	Tropical Forest Soil	VAREASEDLVTQLGSPPTDSGPGDGGRRQAVHGSRLTRRRRVLLGVSIAATLLAI
Ga0126372_103106101	3300010360	Tropical Forest Soil	VTQLGSPPTDSGPGDGGRRQAVHGSRLARRRRVLLGV
Ga0126381_1001919591	3300010376	Tropical Forest Soil	VTQLGSPETQSGPSDHGRQAVRGSRLARRRRALFWMAGGAALLAIGGLIGSSFVKSP
Ga0134127_135604491	3300010399	Terrestrial Soil	VTQLGPPATDRGPGDGGGRQLVHGSRLTRRRRVLLGVGIAATLLAVGGLIG
Ga0153999_10921441	3300012078	Attine Ant Fungus Gardens	VTHVGSPPTQSGLGDIGSRPVIAGSRLARRRRVLLGAGVAAALLAAG
Ga0137370_102557331	3300012285	Vadose Zone Soil	VTQLGSPATDSGPGPDSGSGPPAVRGSRLARRRRVLLGVGIAAALLAVGGLIG
Ga0137384_103760521	3300012357	Vadose Zone Soil	VTQLGAPATDSGPGPDSGGGPAAVRGSRLARRRRVLL
Ga0134087_104028851	3300012977	Grasslands Soil	VTQLGSPATESGPGPDGGSGPPSVRGSRLARRRRVLLGVGIAAALLA
Ga0157380_104259541	3300014326	Switchgrass Rhizosphere	VTQLGSPATDSGPGPDRGSGSGPPAVRGSRLARRRRLLLGVGIAAALL
Ga0132256_1019394881	3300015372	Arabidopsis Rhizosphere	VTQLGSPATDSGPGPDHGSGSGPPAVRGSRLARRRRLLLGVGIAA
Ga0182041_108510482	3300016294	Soil	VTQLGSPATESGPDDSGRRPAARGSRLARRRRVLLGVGIAAALLAVGGLIGASFVK
Ga0182033_114115411	3300016319	Soil	VTQLGSPATESSPGDPGRQAVRGSRLARRRRALFWVAGGAALLAIGGLIG
Ga0182035_109036501	3300016341	Soil	VTQLGSPATESGRDGGGHGQAVRGSRLARRRRVLLGVGIAA
Ga0182037_116577961	3300016404	Soil	VTQLGSPATERGSDDRARPPGSRLARRRRALLGVGIAAALLAVGG
Ga0182037_119002542	3300016404	Soil	VTQLGSPATESSPGDPGRQAVRGSRLARRRRALFWVASGAALLAIGGLIGSAFV
Ga0182038_114088472	3300016445	Soil	VTQLGSPSTQSGPSDDGRQAVRGSRLARRCRALAWVAGGAALLAIGGLIGSSFVKSPQQIAADTAAPPP
Ga0187820_12263221	3300017924	Freshwater Sediment	VTQLGSPATESGRDGGGRGRAVRGSRLTRRRRVLLWVGIAAALLAVGGLI
Ga0187809_100096911	3300017937	Freshwater Sediment	VTQLGSPATESGSDESGRQRAMRGSRLARRRRVLLGVGIA
Ga0187783_101611392	3300017970	Tropical Peatland	VTQVGPPATESGRGEGGGRRAAGGSRLARRRRVLLGVGIAAALLAIGGLIGASFVKSP
Ga0187822_101118772	3300017994	Freshwater Sediment	VTQLGSTATESGPGESSRGQATRGSRLARRRRMLLGVGIAAALL
Ga0187883_105634362	3300018037	Peatland	VTQLGSPATENGPSESGRATTRGSRLARRRRLLLGVGIAAALLAVG
Ga0210395_109758252	3300020582	Soil	VTQPGSPATESSPADGGRKVIRGSRLARRRRVLFWVAGGAALLAIGGLIGSSF
Ga0210393_105810611	3300021401	Soil	VTQLGSMATQSGPDDGSRQRAMRGSRLARRRRVLIGV
Ga0210393_114054891	3300021401	Soil	VTQLGSMATQSGPDDSNRGQARRGSRLARRRRVLIGVGIAAALLA
Ga0210393_116400321	3300021401	Soil	VTQLGSPATESDPSDHGRQAVRGSRLARRRRALFWVAGGAALLAIGGLIGSSFVK
Ga0210397_112285941	3300021403	Soil	VTQLGSMATQSGPDDGSRQRAMRGSRLARRRRVLIGVGIAAALLAIGGLIGASFVKSP
Ga0210390_111822781	3300021474	Soil	VTQLGSPATESGASAGGRRQAVGGSRLTRRRRVLLGVGIAAAL
Ga0210402_103937063	3300021478	Soil	VTQLGSPATESGPDDSARRQAARGSRLARRRRALLGVGIAAALLAVGGLIGASFVKSPQ
Ga0126371_121396162	3300021560	Tropical Forest Soil	VTQLGSPATVSGPSDQDRQAARGSRLARRRRALFWVAGGAALLAIGGLIGSSFVKSP
Ga0224541_10385131	3300022521	Soil	VTQLGSPATESSPSDGGRQAVRGSRLARRRRVLFWV
Ga0207643_107918381	3300025908	Miscanthus Rhizosphere	VTQLGSPATDSGPGPDRGSGSGPPAVRGSRLARRRRLLLGVGIAAALLAVGGLIGASF
Ga0207646_107076782	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	VTQLGSPATESGAGGSSDSDGGRRPAVRGSRLARRRRVLLAVGIAAALLAVGGLI
Ga0207650_103350333	3300025925	Switchgrass Rhizosphere	VTQLGSPATDSGPGPDRGSGSGPPAGRGSRLARRRRLLLGVGIAAALLAVGGLIGASFV
Ga0207641_125055051	3300026088	Switchgrass Rhizosphere	VTQLGPPATDRGPGDGGGRQLVHGSRLTRRRRVLLGVGIAATLLAVGGLIGASFVKSPQ
Ga0209131_12548341	3300026320	Grasslands Soil	VAQLDSPATESGQGDNERGDNERGDSGRGDSGPPRAARGSRLARRRRVLLGTGIAAALLAVGGLIGASFVKSPQQLAANTP
Ga0179587_101076763	3300026557	Vadose Zone Soil	VTQLGSPATESGPDSGSGPPSVHGSRLARRRRVLLGVGIAAALLAVGALIGA
Ga0208240_10001577	3300027030	Forest Soil	VTQLGSMATQSGPDDSGRRQAMRGSRLARRRRVLIGVGIAAALLA
Ga0208099_10169432	3300027096	Forest Soil	VTQLGSMATQSGPDDSGRRQAMRGSRLARRRRVLIGVGIAAALLAVGGLIGASF
Ga0209073_101327851	3300027765	Agricultural Soil	VTQLGSPATGSSTGDPGRQAVRGSRLARRRRALFWVAGGAALLAIGGLIGSSFV
Ga0209167_100388102	3300027867	Surface Soil	MAGVTGTYYGAVTQLGSMATDSGQDDGSRRAAMRGSRLARRRRVLIGVGIAAALLAIGG
Ga0209624_101313511	3300027895	Forest Soil	VTHLSSTATQSGADDGGRRPAVRGSRLARRRRVLIGVGIAAALLAIGGLIGAS
Ga0209006_104503921	3300027908	Forest Soil	VTQLGSPATGPPETGSDPQGTIPAASGHRSRLARRRRVLLGVGIAAALLAAGGL
Ga0302229_100914701	3300028879	Palsa	VTPPGSPAAAGGPDDSGRPPAVAGSQLARRRRMLLYAGLGAALLAVGGLIGASFVKSPQQLAA
Ga0308309_113978751	3300028906	Soil	VTQLGSPARESSPGDGGWRATRGSRLARRRRVLVEIGIAAALLAVGGLIGASFV
Ga0311368_103337581	3300029882	Palsa	VTQLGSPATESSPSDGGRQAVRGSRLARRRRVLFWVAGGAALLA
Ga0311338_109843641	3300030007	Palsa	VTQLGSPATENGPSESGRATTRGSRLARRRRLLLGVGIAAALLAVGGLIGASF
Ga0302306_103374961	3300030043	Palsa	VTQLGSPARESGQGDSGRRPTAHGSRLARRRRVLLGVGIAAAL
Ga0318538_105429881	3300031546	Soil	VTQLGSPSTQSGPSDDGRQAVRGSRLARRCRALAWVAGGAALLAIGGLIGSSFVKSPQQIAADT
Ga0318542_103488942	3300031668	Soil	VAQLGSPATDSGPGGSSPHGSGQVVPGSRLARRRRVLLAVGIAAALLA
Ga0318542_107426612	3300031668	Soil	VTQLGSPSTQSGPSDDGRQAVRGSRLARRRRALAWVA
Ga0318560_108237991	3300031682	Soil	VTQLGSPATESSPGDPGRQAVRGSRLARRRRALFWVA
Ga0318496_104381562	3300031713	Soil	VTQFGSPATESGPDDGARRPAARGSRLARRRRMLLGVGIAA
Ga0306917_115942582	3300031719	Soil	VTQLGSPATESDPSENGRQAVRGSRLARRRRVLFW
Ga0318500_103191801	3300031724	Soil	VTQLGSPATESGRDGGGHGQAVRGSRLARRRRVLL
Ga0306918_109386221	3300031744	Soil	VTQLGSPSTESGPSEDGGQAVRGSRLARRRRALFWVAGGAALLAIGGLIGSSFVKS
Ga0318502_104037212	3300031747	Soil	VTSLGSPEAESSPSDHGRQAGRGSRLARRRRALFWVAGGAALL
Ga0318554_103258732	3300031765	Soil	VTQLGSPATESGSDDRARPPGSRLARRRRALLGVGIAA
Ga0318509_105242902	3300031768	Soil	VTQLGSPATESSPGDPGRQAVRGSRLARRRRALFWVAGGAALLAIGGLIGSS
Ga0318509_106408771	3300031768	Soil	VTQLGSTATDTGPDESGRREAMRGSRLARRRRVLLGVGVAAALLAAGG
Ga0318566_100653951	3300031779	Soil	VTQLGSPATESSPGDPGRQAVRGSRLARRRRALFWVAGGAALLAIGGLI
Ga0318566_105298591	3300031779	Soil	VTQLSSPSTESDSNGSDHAAARGSRLARRRRALLTVGLAAALLAVGGLIGASFVK
Ga0318568_107322091	3300031819	Soil	VTQLGSPATESGRDGGDRGRAVRGSRLTRRRRVLLGVG
Ga0318567_100359651	3300031821	Soil	VTQLGSPATESGRDGGGHGQAVRGSRLARRRRVLLG
Ga0318517_102029351	3300031835	Soil	VTQLGSPSTESGPSEDGGQAVRGSRLARRRRALFWVAGGAALLAIGGLIG
Ga0318495_103820111	3300031860	Soil	VTQLGSPATDSGPGDGGRRKAVRGSRLARRRRVLLGVGIAAALLAAGGALAY
Ga0306919_101954751	3300031879	Soil	VTQLGSPSTQSGPSDDGRQAVRGSRLARRCRALAWVAGGAALLAIGGLIGSSFV
Ga0318536_100163273	3300031893	Soil	VTQLGSPATESGRDDGGRGHAVRGSRLARRRRVLLGV
Ga0318551_109297381	3300031896	Soil	VTQLGSPSTQSGPSDDGRQAVRGSRLARRCRALAWVAGGAALLAIGGLIGS
Ga0306923_117383401	3300031910	Soil	VTQLGSPATESGSDDRARPPGSRLARRRRVLLGVGIA
Ga0306921_109403462	3300031912	Soil	VTQLGSPATESGPSDHGRQAVRGSRLARRRRALFWVAGAAALVAIGGL
Ga0310913_101811421	3300031945	Soil	VTQLGSPATESGRDGGGHGQAVRGSRLARRRRVLLGVGIAAALLAIGGLIGATFVKSP
Ga0310913_109061622	3300031945	Soil	VTQLGSPATESGSDDRARGPGSRLARRRRVLLGVGIAAALLA
Ga0318562_100140556	3300032008	Soil	VTQLGSPATESSPGDPGRQAVRGSRLARRRRALFWVAGGAALLAIAGLIGTS
Ga0310911_103558842	3300032035	Soil	VTQLGSPSTQSGPSDDGRQAVRGSRLARRRRALAWVAGGAALLAIGGLIGSSFVKSPQQ
Ga0318575_101742153	3300032055	Soil	VTSLGSPEAESSPSDHGRQAVRGSRLARRRRALFW
Ga0318524_100428784	3300032067	Soil	VTQLGSPAKESSPGDPGRQAVRGSRLARRRRALFWVAGGAALLAIGGLI
Ga0318524_104101691	3300032067	Soil	VTQLGSTATDTGPDESGRREAMRGSRLARRRRVLLGVGVAAALLAAGGLIGASFVKSPQ
Ga0318518_100080781	3300032090	Soil	VTQLGSPSTQSGPSDDGRQAVRGSRLARRCRALAWVAGGAALLAIGGLIGSSFVKSPQQI
Ga0318577_100410191	3300032091	Soil	VTQLGSPATESGRDGGGHGQAVRGSRLARRRRVLLGVGIAAALLAIGGLIGAT
Ga0318577_104186591	3300032091	Soil	VTQLGSTATDTGPDESGRREAMRGSRLARRRRVLLGVG
Ga0307472_1007850222	3300032205	Hardwood Forest Soil	VTQLGSPATESGSSDHGRQAVRGSRLARRRRALFWVAGGAALLATGGLIGASFVKSPQQI
Ga0335079_116476692	3300032783	Soil	VTQLGSTAVGSGHEQSSAVRGSRLARRRRVLLGVGIAAALLAVGGLIGASFVKSP
Ga0335081_118514371	3300032892	Soil	VTQLGSPATQSGPGDSGGRKAARGSRLTRRRRVLLGVGIAAALIAVGGLI
Ga0335069_116625942	3300032893	Soil	VTQLGSPATESGSDDSAGRQAARGSRLTRRRRVLLGVGIAAALLAVGGLIGASFVKSPQQ
Ga0335074_104667541	3300032895	Soil	VTQLGSPATESEKGASGGGESGGRPAVRGSRLARRRRVLLGVGIGAALLAV
Ga0335075_116830632	3300032896	Soil	VTQLGSPATESGPDDSARRQAARGSRLARRRRALLGVGIAAALLAVGGLIGAS
Ga0335083_112601781	3300032954	Soil	VTQLGSPATDSGPGPGRGSGPPAGRGSRLARRRRVLLGVGIAAALLAVG
Ga0335076_115699921	3300032955	Soil	VTQLGSTAVGSGHEQSSAVRGSRLARRRRVLLGVG
Ga0335077_115479392	3300033158	Soil	VTQPGSPAMGSSPSGGGRQTVRGSRLARRRRVLFWVAGGAAL
Ga0310914_116598282	3300033289	Soil	VTQLGSPATESGSGDSARRQAARGSRLARRRRVLLG
Ga0310914_117153091	3300033289	Soil	VTQLGSPATESGSDDRARPPGSRLARRRRVLLGVGIAAALLAVGGLI
Ga0373959_0183766_3_140	3300034820	Rhizosphere Soil	MTQLGSPATDSGPGPDRGSGPPAVRGSRLARRRRLLLGVGIAAALL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F069078

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences