Metagenome / Metatranscriptome Family F069111

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F069111
Family Type	Metagenome / Metatranscriptome
Number of Sequences	124
Average Sequence Length	38 residues
Representative Sequence	MSVQGVQRSNHHVPRYDALEILMIAAGVVFIVAVALVF
Number of Associated Samples	75
Number of Associated Scaffolds	124

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	87.90 %
% of genes near scaffold ends (potentially truncated)	16.94 %
% of genes from short scaffolds (< 2000 bps)	79.84 %
Associated GOLD sequencing projects	68
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (51.613 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (30.645 % of family members)
Environment Ontology (ENVO)	Unclassified (47.581 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (83.065 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 45.45% β-sheet: 0.00% Coil/Unstructured: 54.55%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 124 Family Scaffolds
PF00132	Hexapep	8.06
PF00072	Response_reg	5.65
PF16576	HlyD_D23	4.84
PF06035	Peptidase_C93	3.23
PF02668	TauD	2.42
PF13505	OMP_b-brl	2.42
PF00873	ACR_tran	1.61
PF13561	adh_short_C2	1.61
PF02627	CMD	0.81
PF04851	ResIII	0.81
PF10276	zf-CHCC	0.81
PF14417	MEDS	0.81
PF13439	Glyco_transf_4	0.81
PF03480	DctP	0.81
PF11324	DUF3126	0.81
PF00211	Guanylate_cyc	0.81
PF03852	Vsr	0.81
PF01823	MACPF	0.81
PF00291	PALP	0.81
PF00171	Aldedh	0.81
PF04717	Phage_base_V	0.81

COG ID	Name	Functional Category	% Frequency in 124 Family Scaffolds
COG3672	Predicted transglutaminase-like protein	Posttranslational modification, protein turnover, chaperones [O]	3.23
COG2175	Taurine dioxygenase, alpha-ketoglutarate-dependent	Secondary metabolites biosynthesis, transport and catabolism [Q]	2.42
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.81
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	0.81
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.81
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.81
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	0.81
COG3727	G:T-mismatch repair DNA endonuclease Vsr, very short patch repair protein	Replication, recombination and repair [L]	0.81
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.81
COG4540	Phage P2 baseplate assembly protein gpV	Mobilome: prophages, transposons [X]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.61 %
All Organisms	root	All Organisms	48.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.61 %
cellular organisms	root	All Organisms → cellular organisms	48.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.61 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	48.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.61 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	43.55 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.61 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	24.19 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.61 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.61 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.61 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	16.13 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.61 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	1.61 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.61 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.23 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.61 %
Gloeobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Gloeobacteria	0.81 %
Alcaligenaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae	0.81 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.81 %
unclassified Burkholderiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.61 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.23 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.61 %
Achromobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Achromobacter	0.81 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.81 %
Gloeobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Gloeobacteria → Gloeobacterales	0.81 %
Burkholderiales bacterium 8X	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium 8X	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.61 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.61 %
Achromobacter agilis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Achromobacter → Achromobacter agilis	0.81 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.81 %
Bradyrhizobium brasilense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium brasilense	0.81 %
Gloeobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Gloeobacteria → Gloeobacterales → Gloeobacteraceae	0.81 %
Burkholderiales bacterium 8X	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium 8X	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.61 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.61 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.81 %
Gloeobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Gloeobacteria → Gloeobacterales → Gloeobacteraceae → Gloeobacter	0.81 %
Achromobacter agilis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Achromobacter → Achromobacter agilis	0.81 %
Bradyrhizobium brasilense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium brasilense	0.81 %
Burkholderiales bacterium 8X	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium 8X	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.61 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.61 %
Gloeobacter kilaueensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Gloeobacteria → Gloeobacterales → Gloeobacteraceae → Gloeobacter → Gloeobacter kilaueensis	0.81 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.81 %
Achromobacter agilis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Achromobacter → Achromobacter agilis	0.81 %
Bradyrhizobium brasilense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium brasilense	0.81 %
Burkholderiales bacterium 8X	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium 8X	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459007\|GJ61VE201A6S14	Not Available	511	Open in IMG/M
3300000567\|JGI12270J11330_10030954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3129	Open in IMG/M
3300002245\|JGIcombinedJ26739_101111201	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	678	Open in IMG/M
3300004103\|Ga0058903_1523518	Not Available	797	Open in IMG/M
3300005538\|Ga0070731_10043020	All Organisms → cellular organisms → Bacteria	3022	Open in IMG/M
3300005538\|Ga0070731_10203928	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1313	Open in IMG/M
3300005602\|Ga0070762_10047751	All Organisms → cellular organisms → Bacteria	2352	Open in IMG/M
3300005602\|Ga0070762_10389414	Not Available	896	Open in IMG/M
3300005602\|Ga0070762_10736243	Not Available	664	Open in IMG/M
3300005610\|Ga0070763_10196627	Not Available	1073	Open in IMG/M
3300005921\|Ga0070766_10082293	Not Available	1876	Open in IMG/M
3300005921\|Ga0070766_10237157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1153	Open in IMG/M
3300005921\|Ga0070766_10352208	Not Available	956	Open in IMG/M
3300005921\|Ga0070766_10518540	Not Available	794	Open in IMG/M
3300005921\|Ga0070766_10687438	Not Available	692	Open in IMG/M
3300005921\|Ga0070766_10794034	Not Available	645	Open in IMG/M
3300006176\|Ga0070765_100064537	All Organisms → cellular organisms → Bacteria → Proteobacteria	3046	Open in IMG/M
3300006176\|Ga0070765_100064822	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3040	Open in IMG/M
3300006176\|Ga0070765_100133964	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2190	Open in IMG/M
3300006176\|Ga0070765_100437145	Not Available	1225	Open in IMG/M
3300006176\|Ga0070765_101136983	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Achromobacter → Achromobacter agilis	738	Open in IMG/M
3300006176\|Ga0070765_101145745	Not Available	735	Open in IMG/M
3300006176\|Ga0070765_101241089	All Organisms → cellular organisms → Bacteria → Proteobacteria	704	Open in IMG/M
3300006176\|Ga0070765_102037748	Not Available	536	Open in IMG/M
3300006893\|Ga0073928_10075361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2910	Open in IMG/M
3300006893\|Ga0073928_10311108	Not Available	1180	Open in IMG/M
3300006893\|Ga0073928_10564746	Not Available	808	Open in IMG/M
3300009524\|Ga0116225_1092963	Not Available	1404	Open in IMG/M
3300009683\|Ga0116224_10545479	Not Available	553	Open in IMG/M
3300010379\|Ga0136449_100771809	All Organisms → cellular organisms → Bacteria → Proteobacteria	1595	Open in IMG/M
3300010379\|Ga0136449_103239218	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300010379\|Ga0136449_103239364	Not Available	628	Open in IMG/M
3300010379\|Ga0136449_104547903	Not Available	509	Open in IMG/M
3300010876\|Ga0126361_10708646	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	600	Open in IMG/M
3300010880\|Ga0126350_11569388	All Organisms → cellular organisms → Bacteria → Proteobacteria	683	Open in IMG/M
3300011120\|Ga0150983_13248184	Not Available	550	Open in IMG/M
3300011120\|Ga0150983_13261228	Not Available	882	Open in IMG/M
3300011120\|Ga0150983_13910397	Not Available	760	Open in IMG/M
3300011120\|Ga0150983_14881586	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	617	Open in IMG/M
3300011270\|Ga0137391_10604255	Not Available	919	Open in IMG/M
3300014200\|Ga0181526_10445999	Not Available	820	Open in IMG/M
3300014489\|Ga0182018_10028715	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3561	Open in IMG/M
3300014489\|Ga0182018_10198118	Not Available	1124	Open in IMG/M
3300014501\|Ga0182024_10156831	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3187	Open in IMG/M
3300014657\|Ga0181522_10201175	All Organisms → cellular organisms → Bacteria	1172	Open in IMG/M
3300014657\|Ga0181522_10301560	Not Available	951	Open in IMG/M
3300015089\|Ga0167643_1049752	Not Available	637	Open in IMG/M
3300019258\|Ga0181504_1274987	Not Available	1115	Open in IMG/M
3300020021\|Ga0193726_1000065	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	189915	Open in IMG/M
3300020579\|Ga0210407_10973787	Not Available	648	Open in IMG/M
3300020580\|Ga0210403_10562014	Not Available	924	Open in IMG/M
3300020581\|Ga0210399_10280839	All Organisms → cellular organisms → Bacteria → Proteobacteria	1390	Open in IMG/M
3300020581\|Ga0210399_10687261	Not Available	842	Open in IMG/M
3300020583\|Ga0210401_10425325	Not Available	1191	Open in IMG/M
3300020583\|Ga0210401_10518930	Not Available	1054	Open in IMG/M
3300021088\|Ga0210404_10221046	Not Available	1022	Open in IMG/M
3300021170\|Ga0210400_10443565	All Organisms → cellular organisms → Bacteria → Proteobacteria	1071	Open in IMG/M
3300021170\|Ga0210400_11162995	Not Available	623	Open in IMG/M
3300021171\|Ga0210405_10005345	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	11772	Open in IMG/M
3300021171\|Ga0210405_10124476	All Organisms → cellular organisms → Bacteria → Proteobacteria	2036	Open in IMG/M
3300021171\|Ga0210405_10437581	Not Available	1028	Open in IMG/M
3300021178\|Ga0210408_10018369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5616	Open in IMG/M
3300021181\|Ga0210388_10203377	All Organisms → cellular organisms → Bacteria → Proteobacteria	1733	Open in IMG/M
3300021181\|Ga0210388_10902412	Not Available	762	Open in IMG/M
3300021403\|Ga0210397_10170425	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1536	Open in IMG/M
3300021403\|Ga0210397_10571777	Not Available	862	Open in IMG/M
3300021406\|Ga0210386_10619276	Not Available	935	Open in IMG/M
3300021420\|Ga0210394_10210504	Not Available	1696	Open in IMG/M
3300021420\|Ga0210394_10972739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	736	Open in IMG/M
3300021420\|Ga0210394_11092506	Not Available	688	Open in IMG/M
3300021420\|Ga0210394_11441171	Not Available	584	Open in IMG/M
3300021420\|Ga0210394_11576305	Not Available	553	Open in IMG/M
3300021474\|Ga0210390_10286555	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1395	Open in IMG/M
3300021474\|Ga0210390_10384895	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium 8X	1186	Open in IMG/M
3300021474\|Ga0210390_11009187	Not Available	680	Open in IMG/M
3300021477\|Ga0210398_10620724	Not Available	877	Open in IMG/M
3300021478\|Ga0210402_10598796	All Organisms → cellular organisms → Bacteria	1022	Open in IMG/M
3300021478\|Ga0210402_10701507	Not Available	935	Open in IMG/M
3300021479\|Ga0210410_10044770	All Organisms → cellular organisms → Bacteria → Proteobacteria	3853	Open in IMG/M
3300021479\|Ga0210410_11160701	Not Available	663	Open in IMG/M
3300021559\|Ga0210409_11447573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	563	Open in IMG/M
3300022522\|Ga0242659_1013388	Not Available	1179	Open in IMG/M
3300022530\|Ga0242658_1187892	Not Available	555	Open in IMG/M
3300022532\|Ga0242655_10044113	Not Available	1075	Open in IMG/M
3300022532\|Ga0242655_10167221	Not Available	654	Open in IMG/M
3300022557\|Ga0212123_10333361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1045	Open in IMG/M
3300022711\|Ga0242674_1048052	Not Available	581	Open in IMG/M
3300022722\|Ga0242657_1028397	Not Available	1113	Open in IMG/M
3300024225\|Ga0224572_1007548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1995	Open in IMG/M
3300025494\|Ga0207928_1037763	All Organisms → cellular organisms → Bacteria → Proteobacteria	930	Open in IMG/M
3300027090\|Ga0208604_1000563	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Gloeobacteria → Gloeobacterales → Gloeobacteraceae → Gloeobacter → Gloeobacter kilaueensis	4409	Open in IMG/M
3300027370\|Ga0209010_1000734	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9448	Open in IMG/M
3300027567\|Ga0209115_1000196	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	7606	Open in IMG/M
3300027568\|Ga0208042_1001950	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6471	Open in IMG/M
3300027583\|Ga0209527_1105886	Not Available	630	Open in IMG/M
3300027629\|Ga0209422_1067746	Not Available	843	Open in IMG/M
3300027678\|Ga0209011_1005107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4524	Open in IMG/M
3300027684\|Ga0209626_1020430	All Organisms → cellular organisms → Bacteria → Proteobacteria	1577	Open in IMG/M
3300027854\|Ga0209517_10493811	Not Available	668	Open in IMG/M
3300027855\|Ga0209693_10057017	All Organisms → cellular organisms → Bacteria → Proteobacteria	1921	Open in IMG/M
3300027879\|Ga0209169_10039418	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2479	Open in IMG/M
3300027889\|Ga0209380_10020908	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium brasilense	3701	Open in IMG/M
3300027889\|Ga0209380_10213499	Not Available	1133	Open in IMG/M
3300027889\|Ga0209380_10413798	Not Available	790	Open in IMG/M
3300027908\|Ga0209006_11422555	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	529	Open in IMG/M
3300028906\|Ga0308309_10120039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2069	Open in IMG/M
3300028906\|Ga0308309_10149653	All Organisms → cellular organisms → Bacteria → Proteobacteria	1877	Open in IMG/M
3300028906\|Ga0308309_10186410	All Organisms → cellular organisms → Bacteria → Proteobacteria	1699	Open in IMG/M
3300028906\|Ga0308309_10231092	All Organisms → cellular organisms → Bacteria → Proteobacteria	1538	Open in IMG/M
3300028906\|Ga0308309_11764398	Not Available	524	Open in IMG/M
3300030888\|Ga0265769_102640	Not Available	953	Open in IMG/M
3300031018\|Ga0265773_1048343	Not Available	504	Open in IMG/M
3300031057\|Ga0170834_111510201	Not Available	507	Open in IMG/M
3300031090\|Ga0265760_10008758	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2893	Open in IMG/M
3300031231\|Ga0170824_103537415	All Organisms → cellular organisms → Bacteria → Proteobacteria	901	Open in IMG/M
3300031238\|Ga0265332_10222867	All Organisms → cellular organisms → Bacteria → Proteobacteria	782	Open in IMG/M
3300031446\|Ga0170820_13521983	All Organisms → cellular organisms → Bacteria → Proteobacteria	1360	Open in IMG/M
3300031474\|Ga0170818_111662646	All Organisms → cellular organisms → Bacteria → Proteobacteria	729	Open in IMG/M
3300031708\|Ga0310686_103213877	Not Available	587	Open in IMG/M
3300031708\|Ga0310686_119836578	Not Available	1350	Open in IMG/M
3300031715\|Ga0307476_10000431	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	33469	Open in IMG/M
3300032160\|Ga0311301_10139228	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4456	Open in IMG/M
3300032160\|Ga0311301_10522126	All Organisms → cellular organisms → Bacteria → Proteobacteria	1750	Open in IMG/M
3300032174\|Ga0307470_10194806	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1289	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.39%
Host-Associated	Host-Associated	1.61%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.94%
Aquatic	Environmental → Aquatic	6.45%
Plants	Host-Associated → Plants	1.61%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	91.94%
Freshwater	Environmental → Aquatic → Freshwater	3.23%
Thermal Springs	Environmental → Aquatic → Thermal Springs	3.23%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.61%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	55.65%
Loam	Environmental → Terrestrial → Soil → Loam	33.87%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.23%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	3.23%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.42%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.81%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.81%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	35.48%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	33.87%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.55%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.23%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	3.23%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.42%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.81%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	30.65%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	22.58%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	11.29%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	8.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.84%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	3.23%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.23%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	2.42%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.61%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.61%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	1.61%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	1.61%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.81%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.81%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.81%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.81%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.81%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459007	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 10-21cm	Environmental	Open in IMG/M
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004103	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF242 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300015089	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8A, Adjacent to main proglacial river, end of transect (Watson river))	Environmental	Open in IMG/M
3300019258	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022522	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022530	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022711	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022722	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024225	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU5	Host-Associated	Open in IMG/M
3300025494	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300027090	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF016 (SPAdes)	Environmental	Open in IMG/M
3300027370	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)	Environmental	Open in IMG/M
3300027567	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027568	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG (SPAdes)	Environmental	Open in IMG/M
3300027583	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027629	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M3 (SPAdes)	Environmental	Open in IMG/M
3300027678	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027684	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030888	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU6 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031018	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031238	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG	Host-Associated	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
L02_05645630	2170459007	Grass Soil	MSVQGVQRSNQHVPRYDALEILMIAAGVVFIVAVALVF
JGI12270J11330_100309544	3300000567	Peatlands Soil	MSVQGVQGSNSHVPHYDALEILMIAAGVVFIVAVALVF*
JGIcombinedJ26739_1011112011	3300002245	Forest Soil	VQGVQRSNHHAPRYDALEILMIAAGVVLIVAVALVF*
Ga0058903_15235182	3300004103	Forest Soil	MSVQGVQRSNHHAPRYDVLEILMIAAGVVFIVAVALDFDGSSNGV
Ga0070731_100430204	3300005538	Surface Soil	MSVQGVQRTNDHIPRYDALEILMIAAGVVFIVAVALVF*
Ga0070731_102039282	3300005538	Surface Soil	MSVQGVQRSNSHVPRYDALEILMIASGVVFIVAVALVF*
Ga0070762_100477512	3300005602	Soil	MSVQGVQRSNRPAPRYDALEILMIAAGVVLIVAVALVI*
Ga0070762_103894141	3300005602	Soil	MSVQGVQRSDQHIPRYDVLEILMIAGGVVFIVAVALVF*
Ga0070762_107362432	3300005602	Soil	MSVQGVQRTDNHVPRYDVLEILMIAAGVVFIVAIALVF*
Ga0070763_101966272	3300005610	Soil	MSVQGVQRSNDHVPRYDALEILMIAAGVVFIVAVALVF*
Ga0070766_100822932	3300005921	Soil	MSVQGVQRTNNHVPRYDALEILMIAAGVVFIVAVALVF*
Ga0070766_102371572	3300005921	Soil	MSVQGVQRSNSHVPRYDALEILMIAAGVVFIVAVALVF*
Ga0070766_103522082	3300005921	Soil	MSVQGVQRSSNHVPRYDVLEILMIAAGVVFIVAVALVF*
Ga0070766_105185402	3300005921	Soil	MSVQGVQHSSNHIPRYDAIEILMIAAGVVFIVAVALVF*
Ga0070766_106874382	3300005921	Soil	MSVQGVQRSDQHIPRYDVLEILMIAAGVVFIVAVALVF*
Ga0070766_107940341	3300005921	Soil	MSVQGVQRTDNHVPRYDALEILMIAAGVVFIVAVALVF*
Ga0070765_1000645372	3300006176	Soil	MSAQGVQRTNNHVPRYDALEILMIAAGVVFIVAVAFIM*
Ga0070765_1000648223	3300006176	Soil	MSVQGVRRSNGYVPRYDALEILMIASGVVFIVAVALVF*
Ga0070765_1001339644	3300006176	Soil	MSVQGVHRSSHHAPRYDVLEILMIAAGVVFIVAVALVF*
Ga0070765_1004371451	3300006176	Soil	MSVQGVQRSNSHVPRYDILEILMIAAGVVFIVAVALVF*
Ga0070765_1011369831	3300006176	Soil	GSTAMSVQGVQRSNQHVPRYDALEILMIAAGVVFIVAVALVF*
Ga0070765_1011457452	3300006176	Soil	MSVQGVQRSDSHVPRYDVLEILMIAAGVVFIVAVALVF*
Ga0070765_1012410892	3300006176	Soil	NRRLLTGSTAMSVQGVQRTDNHVPRYDALEILMIAAGVVFIVAVALVF*
Ga0070765_1020377481	3300006176	Soil	RRLLTGSTAMSVQGVQRTDNRVPRYDALEILMIAAGVVFIVAVALVF*
Ga0073928_100753615	3300006893	Iron-Sulfur Acid Spring	MSVQGVQRSNHHAPRYDVLEILMIAAGVVFIVAVALVF*
Ga0073928_103111083	3300006893	Iron-Sulfur Acid Spring	MSVQGVQRSNHHAPRYDALEILMIAAGVVFIVAVALVF*
Ga0073928_105647461	3300006893	Iron-Sulfur Acid Spring	MSVQGVQRSNHHAPRYDVLEILMIAAGVVLIVAVALVF*
Ga0116225_10929633	3300009524	Peatlands Soil	MSVQGVQRSNSHAPRFDALEILMIAVGVVFIVAVALVF*
Ga0116224_105454792	3300009683	Peatlands Soil	MSVQGVQRSNSHVPHYDALEILMIAAGVVFIVAVALVF*
Ga0136449_1007718093	3300010379	Peatlands Soil	MSVQGVQRSNSHIPRYDALEILMIAVGVVFIVAVALVF*
Ga0136449_1032392181	3300010379	Peatlands Soil	MSVQGVQPSSHPVPRYDGLVILMIAAGVVFIVAVALVF*
Ga0136449_1032393641	3300010379	Peatlands Soil	MSVQGVQRSNQHVPRYDAIEILMIAAGVVFIVAVALVF*
Ga0136449_1045479031	3300010379	Peatlands Soil	MSVQGVQRSSHPVPRYDGLEILMIAAGVVFIVAVALVF*
Ga0126361_107086462	3300010876	Boreal Forest Soil	STVMSVQDVQRSNHHVPRYDALEILMIAAGVVFIVAVALVF*
Ga0126350_115693882	3300010880	Boreal Forest Soil	SVQGVQRSNHHVPRYDALEILMIAAGVVFIVAVALVF*
Ga0150983_132481841	3300011120	Forest Soil	MSVQGVQRTNNHVPRYDALEILMIAAGVVLIVAVALVF*
Ga0150983_132612283	3300011120	Forest Soil	MSAQGVQHSNHHAPRYDVLEILMIAAGVVLIVAVALVF*
Ga0150983_139103972	3300011120	Forest Soil	MSVQGVQRSNNHVPRYDALEILMIDAGVVFIVAVALVF*
Ga0150983_148815861	3300011120	Forest Soil	MSVQGVQRTDNHVPRYDALEILMIAAGVVFIVAVALVL*
Ga0137391_106042551	3300011270	Vadose Zone Soil	MTAQSIQRSNTHVPRYDALEILMIAAGVVFIVAVALVF*
Ga0181526_104459992	3300014200	Bog	MSVQGVQHSSNHVPRYDALEILMIAAGVVLIVAVALVF*
Ga0182018_100287154	3300014489	Palsa	MSVQGVERSNNHAPRYDVLEILMIAAGVVLIVAVALVF*
Ga0182018_101981182	3300014489	Palsa	MPAQSVQRSNNHFPRYDTLEILMITAGVVFIVAVALVF*
Ga0182024_101568312	3300014501	Permafrost	MSVQDVQRSNHHVPRYDALEILMIAAGVVFIVAVALVF*
Ga0181522_102011751	3300014657	Bog	MSVQGVQHSNNHVPRHDVLEILMIAAGVVLAVAVALVF*
Ga0181522_103015601	3300014657	Bog	MSVQGAQRTNNHVPRHDVLEVLMIAAGVVLAVAVALVF*
Ga0167643_10497522	3300015089	Glacier Forefield Soil	MSVQGVQRSNQHVPRYDVLEILMIAAGVVLIVAVALVF*
Ga0181504_12749872	3300019258	Peatland	MSVQGVQRTDNHIPRYDGLEILMIAAGVVLIVAVALVF
Ga0193726_1000065175	3300020021	Soil	MSVQGVQRTNNHIPRYDALEILMIAAGVVFIVAVALVF
Ga0210407_109737871	3300020579	Soil	MSVQGVQRSNSHVPRYDALEILMIAAGVVFIVAVALVF
Ga0210403_105620142	3300020580	Soil	MSVQGVQRSNGHVPRYDTLEILMIAAGVVFIVAVALVF
Ga0210399_102808392	3300020581	Soil	MSVQGVQRSNHHAPRYDVLEILMIAAGVVFIVAVALVF
Ga0210399_106872612	3300020581	Soil	MSVQGVRRSNGYVPRYDALEILMIASGVVFIVAVALVF
Ga0210401_104253252	3300020583	Soil	MSVQGVQRSNSHVPRYDVLEILMIAAGVVFIVAVALVF
Ga0210401_105189302	3300020583	Soil	MSVQGVQRSNRPAPRYDALEILMIAAGVVLIVAVALVI
Ga0210404_102210461	3300021088	Soil	MSVQGVQRSNHHAPRYDALEILMIGAGDVFIVAVALVF
Ga0210400_104435652	3300021170	Soil	MSVQGVQRSNHHFPRYDALEILMIAAGVVFIVAVALVF
Ga0210400_111629952	3300021170	Soil	MSVQGVQRSNQHVPRYDALEILMIAAGVVFIVAVALV
Ga0210405_100053459	3300021171	Soil	MSVQGVQRSNHHAPRYDVLEILMIAAGVVLIVAVALVF
Ga0210405_101244761	3300021171	Soil	MSVQGVQRSNSHVPRCDILEILMIAAGVVFIVAVALVF
Ga0210405_104375812	3300021171	Soil	MSVQGVQRTNDHIPRYDALEILMIAAGVVFIVAVALVF
Ga0210408_100183692	3300021178	Soil	MSVQGVQRSNQHVPRYDVLEILMIAAGVVFIVAVALVF
Ga0210388_102033773	3300021181	Soil	MSVQGVQRSDNHVPRYDALEILMVAAGVVLIVAVALVF
Ga0210388_109024121	3300021181	Soil	MSVQGVQRSNHHIPRYDALEILMIAAGVVFIVAVALVF
Ga0210397_101704251	3300021403	Soil	MSVQGVQRSNGHVPRYDALEILMIASGVVFIVTVALVF
Ga0210397_105717771	3300021403	Soil	MSVQGVQGSNHHVPRYDALEILMIAAGVVFIVAVALVF
Ga0210386_106192763	3300021406	Soil	MSVQGVQRSNRPVPRYDALEILMIAAGVVLIVAVALVI
Ga0210394_102105042	3300021420	Soil	MSVQGVQRTNNRVPRYDAIEILMIAAGVVLIVAVALLF
Ga0210394_109727392	3300021420	Soil	GSTAMSVQGVQRSNGHVPRYDTLEILMIAAGVVFIVAVALVF
Ga0210394_110925062	3300021420	Soil	MSVQGVQRSNHHFPSYDALEILMIAAGVVFIVAVALVF
Ga0210394_114411712	3300021420	Soil	MSVQGVQRSDSHVPRYDVLEILMIAAGVVFIVAVALVF
Ga0210394_115763052	3300021420	Soil	MSVQGVQRSNSHVQRYDVLEILMIAAGVVFIVAVALVF
Ga0210390_102865552	3300021474	Soil	MSVQGVQRSNGHVPRYDALEILMIAAGVVFIVAVALVF
Ga0210390_103848952	3300021474	Soil	TGSTVMSVQGVQRSNHPAPRYDVLEILMIAAGVVLIVAVALVF
Ga0210390_110091872	3300021474	Soil	MSVQGVQRSNHHALRYNALEILMIAAGVVFIIAVALVF
Ga0210398_106207241	3300021477	Soil	MSVQGVQRSRRYVPRYDVLEILMIAAGVVLIVAVALVF
Ga0210402_105987962	3300021478	Soil	MSVQGVPRSNRPVPRYDALEVLMIAAGVVLIVAVALVI
Ga0210402_107015071	3300021478	Soil	MSVQGVQRSNIHVPRYDVLEILMIAAGVVFIVAVALVF
Ga0210410_100447703	3300021479	Soil	MSVQGVQRSNHHAPRYDVLEILMVAAGVVFIVAVALVF
Ga0210410_111607011	3300021479	Soil	TAMSVQGVQRSNHHALRYDALEILMIAAGVVFIVAVALVF
Ga0210409_114475731	3300021559	Soil	RVQGVQHSNHHAPRYDVLEILMIAAGVVLIVAVALVF
Ga0242659_10133881	3300022522	Soil	MSVQGVQRSNQHVPRYDVLEVLMIAAGVVFIVAVALVF
Ga0242658_11878922	3300022530	Soil	MSVQGVQRSNHHLPRHDALEILMIAAGVVFIVAVALVF
Ga0242655_100441131	3300022532	Soil	MSVQGVRRSNGHVPRYDALEILMIAAGVVFIVAVALVF
Ga0242655_101672212	3300022532	Soil	MSVQGVQRSNHHALRYDALEILMIAAGVVFIVAVALVF
Ga0212123_103333612	3300022557	Iron-Sulfur Acid Spring	MSVQGVQRSNHHAPRYDALEILMIAAGVVFIVAVALVF
Ga0242674_10480522	3300022711	Soil	MSVQGVQRTDNHVARYDALEILMIAAGVVFIVAVALVF
Ga0242657_10283972	3300022722	Soil	MSVQGVQRSNGHVPRYDALEILMIASGVVFIVAVALVF
Ga0224572_10075483	3300024225	Rhizosphere	MSVQGVQRSNNHVPRYDALEILMIAAGVVFIVAVALVI
Ga0207928_10377632	3300025494	Arctic Peat Soil	MSVQGLQRSNSHVPRYDVLEILMIAAGVVFIVAVALVF
Ga0208604_10005634	3300027090	Forest Soil	MSVQGVQRSNHHAPRYDILEILMIAAGVVFIVAVALVF
Ga0209010_10007344	3300027370	Forest Soil	MSVQGVQHSSNHVPRYDVLEILMIAAGVVFIVAVALVF
Ga0209115_10001967	3300027567	Forest Soil	MSVQGVQRTDNHVPRYDALEILMIAAGVVFIVAVALVF
Ga0208042_10019507	3300027568	Peatlands Soil	MSVQGVQGSNSHVPHYDALEILMIAAGVVFIVAVALVF
Ga0209527_11058862	3300027583	Forest Soil	MSVQGVQRSNHHAPRYDVLEVLMIAAGAVFIVAVALVF
Ga0209422_10677461	3300027629	Forest Soil	MSVQGVQRSNSHFPRYDALEILMIAAGVVFIVAVALVF
Ga0209011_10051078	3300027678	Forest Soil	MSVQGVQRSNHHVPRYDALEILMIAAGVVFIVAVALVF
Ga0209626_10204303	3300027684	Forest Soil	MSVQGVQRSNHHAPRYDVLEILMISAGVVFIVAVALVF
Ga0209517_104938112	3300027854	Peatlands Soil	MSVQGVQRSNSHAPRFDALEILMIAVGVVFIVAVALVF
Ga0209693_100570173	3300027855	Soil	MSVQGVQRSRSYVPRYDALEILMIAAGVVFIVAVALVF
Ga0209169_100394184	3300027879	Soil	MSVQGVQRSNDHVPRYDALEILMIAAGVVFIVAVALVF
Ga0209380_100209083	3300027889	Soil	MSVQGVQRTNNHVPRYDALEILMIAAGVVFIVAVALVF
Ga0209380_102134991	3300027889	Soil	MSVQGVQRSSNHVPRYDVLEILMIAAGVVFIVAVALVF
Ga0209380_104137982	3300027889	Soil	MSVQGVQHSSNHIPRYDAIEILMIAAGVVFIVAVALVF
Ga0209006_114225552	3300027908	Forest Soil	QGVQRSNHHAPRFDALEILMIAAGVVFIVAVALVF
Ga0308309_101200393	3300028906	Soil	MSVQGVHRSSHHAPRYDVLEILMIAAGVVFIVAVALVF
Ga0308309_101496531	3300028906	Soil	MSVQGVQHSNHHVPRYDVLEILMIAAGVVFIVAVALVF
Ga0308309_101864101	3300028906	Soil	MSVQGVQRSNSHVPRYDILEILMIAAGVVFIVAVALVF
Ga0308309_102310922	3300028906	Soil	MSAQGVQRTNNHVPRYDALEILMIAAGVVFIVAVAFIM
Ga0308309_117643981	3300028906	Soil	KSQRINRRLLTGSTVMSVQGVQRSNQHVPRYDALEILMIAAGVVFIVAVALVF
Ga0265769_1026401	3300030888	Soil	MSVQGVQRTDNHVPRYDVLEILMIAAGVVFIVAIALVF
Ga0265773_10483431	3300031018	Soil	ITNRRLLTGSTAMSVQGVQRSNNHVPRYDALEILMIAAGVVFIVAVALVI
Ga0170834_1115102012	3300031057	Forest Soil	MSVQGVQRSDHHVPRYDVLEILMIAAGVVFIVAVALVF
Ga0265760_100087584	3300031090	Soil	MSVQGVQRSNSHIPRYDALEILMIGAGVVFIVAVALVF
Ga0170824_1035374152	3300031231	Forest Soil	VQGVQRSNHHAPRYDILEILMIAAGVVLIVAVALVF
Ga0265332_102228672	3300031238	Rhizosphere	MSVQGVQRSNSHVPRYDILEILMIAAGVVLIVAVALVF
Ga0170820_135219831	3300031446	Forest Soil	MSVQGVQRSNNHVPRYDALEILMIAAGVVFIVAVALVF
Ga0170818_1116626461	3300031474	Forest Soil	VQGVQRSNQHVPRYDVLEILMIAAGVVLIVAVALVF
Ga0310686_1032138771	3300031708	Soil	LLTGSTAMSVQGVQRTNDHIPRYDALEILMIAAGVVFIVAVALVF
Ga0310686_1198365782	3300031708	Soil	MSVQGVQRSNHPAPRYDVLEILMIAAGVVLIVAVALVF
Ga0307476_1000043133	3300031715	Hardwood Forest Soil	MSVQGVQRSNQHVPRYDALEVLMIAAGVAFIVAVALVF
Ga0311301_101392287	3300032160	Peatlands Soil	MSVQGVQRSNSHVPHYDALEILMIAAGVVFIVAVALVF
Ga0311301_105221263	3300032160	Peatlands Soil	MSVQGVQRSNSHIPRYDALEILMIAVGVVFIVAVALVF
Ga0307470_101948062	3300032174	Hardwood Forest Soil	MSVQGVQHSNHHVPRYDVLEILMIAAGVVLIVAVALVF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F069111

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences