Metagenome / Metatranscriptome Family F069281

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F069281
Family Type	Metagenome / Metatranscriptome
Number of Sequences	124
Average Sequence Length	58 residues
Representative Sequence	MSTDLGLVSERKCKATQAQAQTEVTILLVFVIITLAMLVLLFADQSFSKATIELMCLF
Number of Associated Samples	75
Number of Associated Scaffolds	124

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	77.87 %
% of genes near scaffold ends (potentially truncated)	26.61 %
% of genes from short scaffolds (< 2000 bps)	83.06 %
Associated GOLD sequencing projects	67
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (70.968 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (22.581 % of family members)
Environment Ontology (ENVO)	Unclassified (48.387 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (66.129 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 63.95% β-sheet: 0.00% Coil/Unstructured: 36.05%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 124 Family Scaffolds
PF04392	ABC_sub_bind	4.03
PF13378	MR_MLE_C	4.03
PF02077	SURF4	3.23
PF09361	Phasin_2	3.23
PF00239	Resolvase	2.42
PF07681	DoxX	1.61
PF09992	NAGPA	0.81
PF06411	HdeA	0.81
PF13387	DUF4105	0.81
PF03457	HA	0.81
PF04226	Transgly_assoc	0.81
PF04972	BON	0.81
PF00528	BPD_transp_1	0.81
PF13424	TPR_12	0.81
PF13683	rve_3	0.81
PF00753	Lactamase_B	0.81
PF13417	GST_N_3	0.81
PF02746	MR_MLE_N	0.81
PF08042	PqqA	0.81

COG ID	Name	Functional Category	% Frequency in 124 Family Scaffolds
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	4.84
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	4.03
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	2.42
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	2.42
COG4270	Uncharacterized membrane protein	Function unknown [S]	1.61
COG4948	L-alanine-DL-glutamate epimerase or related enzyme of enolase superfamily	Cell wall/membrane/envelope biogenesis [M]	1.61
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.97 %
All Organisms	root	All Organisms	29.03 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.97 %
cellular organisms	root	All Organisms → cellular organisms	29.03 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.97 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	29.03 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.97 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	21.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.97 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	16.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.97 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9.68 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	4.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.97 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.84 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4.84 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	4.03 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.97 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.84 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.03 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	2.42 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	1.61 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.97 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.84 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	2.42 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1.61 %
unclassified Hyphomicrobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium	1.61 %
Afipia felis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia felis	0.81 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.97 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.84 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2.42 %
Hyphomicrobium sp. GJ21	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp. GJ21	1.61 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1.61 %
Bradyrhizobium sp. Tv2a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	0.81 %
Afipia felis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia felis	0.81 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000793\|AF_2010_repII_A001DRAFT_10075239	Not Available	726	Open in IMG/M
3300004152\|Ga0062386_100605134	Not Available	895	Open in IMG/M
3300004633\|Ga0066395_10055847	Not Available	1767	Open in IMG/M
3300005332\|Ga0066388_100098976	All Organisms → cellular organisms → Bacteria	3373	Open in IMG/M
3300005332\|Ga0066388_100137176	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	3003	Open in IMG/M
3300005332\|Ga0066388_100252949	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia felis	2401	Open in IMG/M
3300005332\|Ga0066388_100327347	All Organisms → cellular organisms → Bacteria → Proteobacteria	2178	Open in IMG/M
3300005332\|Ga0066388_100390217	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2038	Open in IMG/M
3300005332\|Ga0066388_100540482	Not Available	1796	Open in IMG/M
3300005332\|Ga0066388_101633141	All Organisms → cellular organisms → Bacteria	1136	Open in IMG/M
3300005332\|Ga0066388_101959101	Not Available	1048	Open in IMG/M
3300005332\|Ga0066388_101997401	Not Available	1039	Open in IMG/M
3300005332\|Ga0066388_102816310	Not Available	888	Open in IMG/M
3300005332\|Ga0066388_102816993	Not Available	888	Open in IMG/M
3300005332\|Ga0066388_103305142	Not Available	824	Open in IMG/M
3300005332\|Ga0066388_105618387	Not Available	635	Open in IMG/M
3300005363\|Ga0008090_14342542	Not Available	508	Open in IMG/M
3300005467\|Ga0070706_101855229	Not Available	547	Open in IMG/M
3300005764\|Ga0066903_100276911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2625	Open in IMG/M
3300005764\|Ga0066903_101823959	Not Available	1163	Open in IMG/M
3300005764\|Ga0066903_102060017	Not Available	1097	Open in IMG/M
3300005764\|Ga0066903_103273935	Not Available	875	Open in IMG/M
3300005764\|Ga0066903_103443314	Not Available	853	Open in IMG/M
3300005764\|Ga0066903_106119414	Not Available	630	Open in IMG/M
3300006052\|Ga0075029_101156312	Not Available	539	Open in IMG/M
3300006052\|Ga0075029_101185633	Not Available	533	Open in IMG/M
3300006086\|Ga0075019_11073448	Not Available	522	Open in IMG/M
3300006172\|Ga0075018_10812617	Not Available	513	Open in IMG/M
3300009038\|Ga0099829_11567461	Not Available	544	Open in IMG/M
3300009792\|Ga0126374_10051731	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2089	Open in IMG/M
3300010046\|Ga0126384_10929094	Not Available	788	Open in IMG/M
3300010048\|Ga0126373_10184932	Not Available	2008	Open in IMG/M
3300010048\|Ga0126373_10718483	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1058	Open in IMG/M
3300010359\|Ga0126376_10756799	Not Available	943	Open in IMG/M
3300010359\|Ga0126376_11969782	Not Available	625	Open in IMG/M
3300010360\|Ga0126372_10336108	Not Available	1347	Open in IMG/M
3300010361\|Ga0126378_10067600	All Organisms → cellular organisms → Bacteria	3407	Open in IMG/M
3300010361\|Ga0126378_11979747	Not Available	664	Open in IMG/M
3300010361\|Ga0126378_12042000	Not Available	653	Open in IMG/M
3300010361\|Ga0126378_12921993	Not Available	545	Open in IMG/M
3300010366\|Ga0126379_11111877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	896	Open in IMG/M
3300010376\|Ga0126381_100064000	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	4557	Open in IMG/M
3300010376\|Ga0126381_101544439	Not Available	959	Open in IMG/M
3300010376\|Ga0126381_101827909	Not Available	877	Open in IMG/M
3300010376\|Ga0126381_102950842	Not Available	676	Open in IMG/M
3300010376\|Ga0126381_104972411	Not Available	510	Open in IMG/M
3300010398\|Ga0126383_12623965	Not Available	587	Open in IMG/M
3300010863\|Ga0124850_1038288	Not Available	1528	Open in IMG/M
3300012948\|Ga0126375_10162510	Not Available	1423	Open in IMG/M
3300012971\|Ga0126369_11047752	Not Available	904	Open in IMG/M
3300012971\|Ga0126369_11753779	Not Available	710	Open in IMG/M
3300016294\|Ga0182041_10059655	All Organisms → cellular organisms → Bacteria → Proteobacteria	2627	Open in IMG/M
3300016294\|Ga0182041_11883804	Not Available	555	Open in IMG/M
3300016319\|Ga0182033_11559022	Not Available	597	Open in IMG/M
3300016357\|Ga0182032_10134072	All Organisms → cellular organisms → Bacteria → Proteobacteria	1808	Open in IMG/M
3300016371\|Ga0182034_10095460	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2115	Open in IMG/M
3300016371\|Ga0182034_11624286	Not Available	568	Open in IMG/M
3300016387\|Ga0182040_10151059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1655	Open in IMG/M
3300016404\|Ga0182037_12152775	Not Available	502	Open in IMG/M
3300016422\|Ga0182039_11620515	Not Available	591	Open in IMG/M
3300016422\|Ga0182039_11825471	Not Available	557	Open in IMG/M
3300016445\|Ga0182038_10627462	Not Available	930	Open in IMG/M
3300017822\|Ga0187802_10002332	All Organisms → cellular organisms → Bacteria → Proteobacteria	5346	Open in IMG/M
3300017822\|Ga0187802_10005007	All Organisms → cellular organisms → Bacteria	3968	Open in IMG/M
3300017822\|Ga0187802_10116246	All Organisms → cellular organisms → Bacteria	1011	Open in IMG/M
3300017924\|Ga0187820_1005990	All Organisms → cellular organisms → Bacteria	2844	Open in IMG/M
3300017937\|Ga0187809_10035658	All Organisms → cellular organisms → Bacteria	1593	Open in IMG/M
3300017995\|Ga0187816_10502048	Not Available	546	Open in IMG/M
3300018007\|Ga0187805_10272454	Not Available	777	Open in IMG/M
3300018060\|Ga0187765_10757989	Not Available	643	Open in IMG/M
3300020580\|Ga0210403_10964027	Not Available	669	Open in IMG/M
3300020581\|Ga0210399_10630605	Not Available	885	Open in IMG/M
3300021560\|Ga0126371_10095142	Not Available	2954	Open in IMG/M
3300021560\|Ga0126371_11219235	Not Available	888	Open in IMG/M
3300021560\|Ga0126371_11474292	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	809	Open in IMG/M
3300021560\|Ga0126371_11504471	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	801	Open in IMG/M
3300021560\|Ga0126371_12878887	Not Available	583	Open in IMG/M
3300021560\|Ga0126371_12904755	Not Available	581	Open in IMG/M
3300025915\|Ga0207693_10433342	Not Available	1028	Open in IMG/M
3300027371\|Ga0209418_1011878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1378	Open in IMG/M
3300027874\|Ga0209465_10630806	Not Available	529	Open in IMG/M
3300031543\|Ga0318516_10187081	Not Available	1194	Open in IMG/M
3300031573\|Ga0310915_10085632	All Organisms → cellular organisms → Bacteria → Proteobacteria	2105	Open in IMG/M
3300031668\|Ga0318542_10634211	Not Available	558	Open in IMG/M
3300031680\|Ga0318574_10138159	Not Available	1377	Open in IMG/M
3300031719\|Ga0306917_10575662	Not Available	885	Open in IMG/M
3300031753\|Ga0307477_10327752	Not Available	1055	Open in IMG/M
3300031753\|Ga0307477_10934622	Not Available	571	Open in IMG/M
3300031768\|Ga0318509_10129552	Not Available	1381	Open in IMG/M
3300031771\|Ga0318546_10561146	Not Available	802	Open in IMG/M
3300031777\|Ga0318543_10425830	Not Available	595	Open in IMG/M
3300031781\|Ga0318547_10552186	Not Available	713	Open in IMG/M
3300031781\|Ga0318547_10992408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	525	Open in IMG/M
3300031797\|Ga0318550_10320779	Not Available	751	Open in IMG/M
3300031821\|Ga0318567_10632101	Not Available	608	Open in IMG/M
3300031879\|Ga0306919_10343652	Not Available	1139	Open in IMG/M
3300031890\|Ga0306925_10135257	All Organisms → cellular organisms → Bacteria → Proteobacteria	2647	Open in IMG/M
3300031890\|Ga0306925_10319999	Not Available	1667	Open in IMG/M
3300031890\|Ga0306925_10333163	Not Available	1631	Open in IMG/M
3300031890\|Ga0306925_12011904	Not Available	545	Open in IMG/M
3300031910\|Ga0306923_10378261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp. GJ21	1613	Open in IMG/M
3300031910\|Ga0306923_10451244	Not Available	1459	Open in IMG/M
3300031912\|Ga0306921_10291029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1913	Open in IMG/M
3300031912\|Ga0306921_11085491	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp. GJ21	898	Open in IMG/M
3300031942\|Ga0310916_10809739	Not Available	788	Open in IMG/M
3300031947\|Ga0310909_10281550	Not Available	1392	Open in IMG/M
3300031947\|Ga0310909_11252888	Not Available	598	Open in IMG/M
3300031954\|Ga0306926_10687517	All Organisms → cellular organisms → Bacteria	1242	Open in IMG/M
3300031954\|Ga0306926_12618371	Not Available	550	Open in IMG/M
3300031962\|Ga0307479_11718406	Not Available	581	Open in IMG/M
3300032044\|Ga0318558_10539528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	583	Open in IMG/M
3300032051\|Ga0318532_10100586	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1019	Open in IMG/M
3300032052\|Ga0318506_10255789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	776	Open in IMG/M
3300032064\|Ga0318510_10124165	Not Available	1002	Open in IMG/M
3300032066\|Ga0318514_10546072	Not Available	617	Open in IMG/M
3300032076\|Ga0306924_10579008	All Organisms → cellular organisms → Bacteria	1272	Open in IMG/M
3300032090\|Ga0318518_10728975	Not Available	504	Open in IMG/M
3300032094\|Ga0318540_10129267	Not Available	1202	Open in IMG/M
3300032180\|Ga0307471_100923673	Not Available	1040	Open in IMG/M
3300032180\|Ga0307471_103586177	Not Available	549	Open in IMG/M
3300032261\|Ga0306920_100161875	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	3336	Open in IMG/M
3300033290\|Ga0318519_10481634	Not Available	746	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	90.32%
Aquatic	Environmental → Aquatic	9.68%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	90.32%
Freshwater	Environmental → Aquatic → Freshwater	6.45%
Sediment	Environmental → Aquatic → Sediment	3.23%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	69.35%
Loam	Environmental → Terrestrial → Soil → Loam	20.16%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	6.45%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.23%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.81%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	45.16%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.39%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	18.55%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	5.65%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.23%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.61%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.81%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.81%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	22.58%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	20.16%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	20.16%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	17.74%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	5.65%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.03%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.23%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.61%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.81%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.81%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.81%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.81%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.81%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.81%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027371	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A001DRAFT_100752391	3300000793	Forest Soil	MSTDLGLVLERKRKAAQAQAQTEVTILLVFVIIALAMLVLLFADQTFSKAAIEFMCLI*
Ga0062386_1006051343	3300004152	Bog Forest Soil	MPIDVGLVLERKGKAAQAQAQTEVTILLVFVIITLAMLVLLFADQSFSKATIELMCLF*
Ga0066395_100558473	3300004633	Tropical Forest Soil	MYTDVRRRKAQAQTEETILLVFVIITLAMLVLLVADQSFSKATIEVMGRLA*
Ga0066388_1000989762	3300005332	Tropical Forest Soil	MPTDLGMALERKRKATQAHTQTEITTAFVWFIICLVMLVLLFADQSLSKTTIGWECLLAP
Ga0066388_1001371762	3300005332	Tropical Forest Soil	MPTDLGVVSERKRKATQAQTQTAITILLVWFIITLATLVLLFADQSFSKATIELMGRLAP
Ga0066388_1002529492	3300005332	Tropical Forest Soil	MPTDLSLVSDRKRKAAAQAQGQIEVTILLVFVIITLAMLVMLFADQSFSKATIELMCFF*
Ga0066388_1003273474	3300005332	Tropical Forest Soil	MGLIMPTDLGVASGRERKATQAQTQTAITILLVFVIISLAMLVLLFADQSFSKATIEMLGRLGP*
Ga0066388_1003902175	3300005332	Tropical Forest Soil	MPTNLRVITERERKATQPETQTAITILLVFVIFSLVMLVLLFLDQSFSKASIELMGRLAP
Ga0066388_1005404823	3300005332	Tropical Forest Soil	MPTDLGVALERKRKATQAQTQTEITIGLVWFIIYLVMLVLLFADQSFSKATIEWECLLAP
Ga0066388_1016331412	3300005332	Tropical Forest Soil	MPIDLGLVSERKGKAAQAQAQTEVTILLVFVIITLAMLVLLLADQSFSKATIELMCLF*
Ga0066388_1019591011	3300005332	Tropical Forest Soil	MPTHLGLALECKRKATQAQTQTAITILLVWVIIALVMLGLLFADQSFSKATIEMMGRLPP
Ga0066388_1019974013	3300005332	Tropical Forest Soil	MSTDLGLVSERKRKAAQAQAQTEVTILLVFVIITLVMLVLLFADQSFSKAAIELMCLF*
Ga0066388_1028163101	3300005332	Tropical Forest Soil	MSINLGLVSQREGRAAQAQAQTEITMMLVFVVITLAMLVLLCADQSFSKAAIEFMCLF*
Ga0066388_1028169933	3300005332	Tropical Forest Soil	MPTNLGVALERKRKAVQPQAQTGVTVLLVFVIISLAMLVLLVADQSFSKAAIELMGRLAP
Ga0066388_1033051422	3300005332	Tropical Forest Soil	MSTDFGLVSERKRKAAGSQARTEVTILLVCVIITLAMLVLLFADQSFSKAAIE
Ga0066388_1056183871	3300005332	Tropical Forest Soil	MPTDLNVVLEHKRTATRAQKQSEITIGLVWVIVSLGMLVLLFADVSFSTPTIGWECLLAP
Ga0008090_143425421	3300005363	Tropical Rainforest Soil	MPTDLGVVSERKRKATQAQTQTVITILLVWFIITLAMLVLLFADQSFSKATI
Ga0070706_1018552292	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MPTDLGVASERKRKATQAETQTAIMILLVCVIITLAMLLLLFSDQSFSKATIELMGRLGP
Ga0066903_1002769112	3300005764	Tropical Forest Soil	VPTDLSVVSERKRKATQAQTQTVITILLVWFIITLAMLVLLFADQSFSKATIELMGRLAP
Ga0066903_1018239591	3300005764	Tropical Forest Soil	MPTDLRAASERKREAAQVQAQTEVTILLVFVIISLATLVLLVGDQSFSKASIEMIGR
Ga0066903_1020600173	3300005764	Tropical Forest Soil	VPTDLGIASERKRKATQTQTQTVITILLVWFIITLATLVLLFSDQSFSKATIELMGRLAP
Ga0066903_1032739353	3300005764	Tropical Forest Soil	MPTDLGALLQRKRKATQAETQTEVTILLVFVIITLAMLVLLVADQSFSKATIEVMGRLAP
Ga0066903_1034433141	3300005764	Tropical Forest Soil	GPDLRGSWIMSTDLGLVSERERKAAQAQAQTEVTILLVSVIIALAMLVLLFADQSFSKAAIEFMCLF*
Ga0066903_1061194141	3300005764	Tropical Forest Soil	MPTDLGAASERKRKATHAETQTEVTILLVFVIISLAMLVLLLATKAFQKHQSK*
Ga0075029_1011563121	3300006052	Watersheds	MPIDVGLVSGRKGKAAQAQAQTEVTILLVFVIITLAMLVLLFADQSFSEATIELMCLF*
Ga0075029_1011856331	3300006052	Watersheds	GWLIMPTDLGAASERKRKAAQAQAQTETTILLVFVIISLVALVVLVADQSFAKATIEMIGHLAP*
Ga0075019_110734481	3300006086	Watersheds	MPTDLGVVSEGKGKAQAQTKAEITILLVCVIITLVMLVLLFADQSFSKATIELMCLF*
Ga0075018_108126171	3300006172	Watersheds	MASEYAGVGWLIMPTDLGAASERKRKAAQAQAQTETTILLVFVIISLVALVVLVADQSFAKATIEMIGHLAP*
Ga0099829_115674611	3300009038	Vadose Zone Soil	VGQPEGWLIMSTDLGVVSEGKDKAQAPTQEVTIVLVWFIICLVMFVLLFADQSFSKATIELMCLF*
Ga0126374_100517311	3300009792	Tropical Forest Soil	MPTNLGVALERKRKAVQPQAQTGVTVLLVFVIISLAMLVLLVADQSFSKATIEVMGRLA*
Ga0126384_109290941	3300010046	Tropical Forest Soil	MPTDLGLALECKRKATQAQTQTAITILLVWVIITLVMLGLLFADQSFSKATIEMMGRLPP
Ga0126373_101849322	3300010048	Tropical Forest Soil	VPTDLSVVSERKRKATQAQTQTVITILLVWFIITLAMLVLLFADQSFSKATIEMLGRLGP
Ga0126373_107184831	3300010048	Tropical Forest Soil	MSINLGLVSQREGRAAQAQAQTEITMMLVFVVITLAMLALLCADQSFSKAAIEFMCLF*
Ga0126376_107567991	3300010359	Tropical Forest Soil	MPTDLGLALECKRKATQAQTQTAITILLVWVIITLVMLGLLFADQSFSKATIEMMGRLLP
Ga0126376_119697821	3300010359	Tropical Forest Soil	MPTDLGVVSERKRKTTQAQTQTEITILLVWVIITLVMLTLLFLDQSFSKATIELMGHLPP
Ga0126372_103361083	3300010360	Tropical Forest Soil	MPTDLGVALERKRKVTQAQTQTEITIGLVWFIIYLVMLVLLFADQSFSKATIEWECLLAP
Ga0126378_100676001	3300010361	Tropical Forest Soil	MPTDLGLALECKRKATQAQTQTAITILLVWVIFTLVMLGLLIADQSFSKATIEMMGRLPP
Ga0126378_119797471	3300010361	Tropical Forest Soil	MSTDLGLVSQREGRAAQAQAQTEITMMLVFVIITLAMLVLLFADQSFSRATIELMCLF*
Ga0126378_120420002	3300010361	Tropical Forest Soil	MSTDLGLVSQREGWAAQSQAQTAITLMLVFVIVSLAMLVLLFADQSFSKATIELMCLF*
Ga0126378_129219931	3300010361	Tropical Forest Soil	WCGSASMPTDLGAASERKRKATHAETQTEVTILLVFVIISLAMLVLLLATKAFQKHQSK*
Ga0126379_111118772	3300010366	Tropical Forest Soil	MPIDLGLVSERKGKAAQAQAQTEVTILLVFVIITLVMLVLLFADQSFSKAAIELMCLF*
Ga0126381_1000640008	3300010376	Tropical Forest Soil	MLAQLQGWLVMPTDLRVASERKREAAQAQAQTELTILLVFVIISLATLVMLVGDQSFSKASIEMIGRIAP*
Ga0126381_1015444392	3300010376	Tropical Forest Soil	MPTDLGLALECKRKATQAQTQTAITILLVWVIIALVMLGLLFADQSFSKATIEMMGRLLP
Ga0126381_1018279094	3300010376	Tropical Forest Soil	VLIMPTDLGVASERKRKAVQPQAQTELTILLVFVIISLAMLVLLVADQSFSKASIEMIGRLAP*
Ga0126381_1029508421	3300010376	Tropical Forest Soil	MSIDLGLVSQREGRAAQAQAQTEITMMLVFVVITLAMLVLLCADQSFSKAAIEFMCLF*
Ga0126381_1049724112	3300010376	Tropical Forest Soil	MLALMPTDLDGASERKRKAAQTQARNENTIQLVIVIISLAMLMLLAADHSVSRASIELIGHLPP*
Ga0126383_126239652	3300010398	Tropical Forest Soil	MPTDLGVVSERKRKTTQAQTQTEITILSVCVIITLVTLTLLFLDQSFSKATIELMGHLPP
Ga0124850_10382882	3300010863	Tropical Forest Soil	MPTDLGVVSERKREAVQAQAQTEVTILLVFVITSLAALVLLVADQSFSKASIEMIGRLAP
Ga0126375_101625101	3300012948	Tropical Forest Soil	MPTDLGLALECKRKATQAQTQTAITILLVWVIFTLVMLGLLFADQSFSKATIEMMGRLPP
Ga0126369_110477521	3300012971	Tropical Forest Soil	MPTDLRAASERKREAAQVQAQTEVTILLVFVIISLATLVLLVGDQSFSKASIEMIGRLAP
Ga0126369_117537791	3300012971	Tropical Forest Soil	MSLNLGLVSQREGRAAQAQAQTEITMMLVFVVITLAMLVLLCADQSFSKAAIEFMCLF*
Ga0182041_100596555	3300016294	Soil	MPTDLNVVLEHKRTATQAQKQSEITIGLVWVIVCLGMLVLLFADVSFSTQQ
Ga0182041_118838041	3300016294	Soil	MVGQPRGLIMPTDLGVASGRERKATQAQTQTVLTILLVWFIVTLTMLVLLFADQSFSKATIELMCLF
Ga0182033_115590223	3300016319	Soil	LGLALERKRKATRAQTQPEITILLVCVIITLVMLKLLFLDQSFSKATIELLGHLPP
Ga0182032_101340722	3300016357	Soil	MPTDLNVVLERKRTATQAQKQSEITIGLVWVIVSLGMLVLLFADVSFSTQQ
Ga0182034_100954603	3300016371	Soil	MPMDLNVVLEHKRTATRAQKQSEITIGLVWVIVSLGMLVLLFADVSFSTQQ
Ga0182034_116242862	3300016371	Soil	MPTDLGVAAERKRKATQAQTQTEITIVLVWLIISLAMLVLLVADQSFSKA
Ga0182040_101510591	3300016387	Soil	MPTDLNVVLEHKRTATQAQKQSEITIGLVWVIIFLGMLVLLFADVSFSTPTIGWECLLAP
Ga0182037_121527751	3300016404	Soil	MPTDLGVAAERKRKATQAQTQTEITIVLVSLIISLAMLVLLVADQSFSKATIELMSR
Ga0182039_116205151	3300016422	Soil	MMSTDLGLVSERQRKAAQGQAQTEVTILLLFVIITLAMLVLLFADQSFSKATIELMCLF
Ga0182039_118254712	3300016422	Soil	MPTDLGALLQRKRKATQAVTQTEVTILLVFVIITLAMLVLLVADQSFSKASIELIGRLAP
Ga0182038_106274622	3300016445	Soil	MPTDLGVISERKRKAAQAQTQTVLTILLVWFIVTLTMLVLLFADQSFSKATIELMCLF
Ga0187802_100023328	3300017822	Freshwater Sediment	MSTDLGLVSERKCKATQAQAQTEVTILLVFVIITLAMLVLLFADQSFSKATIELMCLF
Ga0187802_100050075	3300017822	Freshwater Sediment	MPTDLPALSVRKRKAQAPTQTEITIVLVWVIIWLSMLVLLLADQSFAKATIEWECLF
Ga0187802_101162461	3300017822	Freshwater Sediment	MPIDVGLVSGRKGKAAQAQAQTEVTILLVFVIITLAMLVLLFADQSFSKATIELMCLF
Ga0187820_10059903	3300017924	Freshwater Sediment	MPTDLPTLSVRKRKAQAPTQTEITIVLVWVIIWLSMLVLLLADQSFAKATIEWECLF
Ga0187809_100356583	3300017937	Freshwater Sediment	MSTDLGLVSERKCKATQAQAQTEVTILLVFVIITLAMLVLLFADQSFSK
Ga0187816_105020482	3300017995	Freshwater Sediment	MPIDVGLVSERKGKAAQAQAQTEVTILLVFVIITLAMLVLLFADQSFSKATIELMCLF
Ga0187805_102724541	3300018007	Freshwater Sediment	MPTDLPTLSVRKRKAQAPTQTEITIVLVWVIIWLSMLVLLLADQSFAKA
Ga0187765_107579892	3300018060	Tropical Peatland	MPTDLRVASERKRKAAQAQAQTEVTILSVFVIIGLVMLLLLAVDQSFSKSAIELSGQF
Ga0210403_109640271	3300020580	Soil	ASGRERKATQAQTQTAITILLVFVIISLAMLVLLFADQSFSKATIEMLGRLGP
Ga0210399_106306051	3300020581	Soil	MPINLGLVSERKGEVAQAQAQTEVTILLVFVIITLAMLVLLFADQAFQKQQSN
Ga0126371_100951425	3300021560	Tropical Forest Soil	VPTDLGIASERKRKATQTQKQTVITILLVWFIITLATLVLLFSDQSFSKATIELMGRLAP
Ga0126371_101372363	3300021560	Tropical Forest Soil	MYTDVRRRKAQAQTEETILLVFVIITLAMLVLLVADQSFSKATIEVMGRLA
Ga0126371_112192351	3300021560	Tropical Forest Soil	MLAQLQGWLVMPTDLRVASERKREAAQAQAQTELTILLVFVIISLATLVMLVGDQSFSKASIEMIGRIAP
Ga0126371_114742923	3300021560	Tropical Forest Soil	MSTDLGLVSERKRKAAQAQAQTEVTILLVFVIITLVMLVLLFADQSFSKAAIELMCLF
Ga0126371_115044711	3300021560	Tropical Forest Soil	MPTDLGVVSERKRKATQAQTQTAITILLVWFIITLATLVLLFADQSFSKATIELIGRLGP
Ga0126371_128788871	3300021560	Tropical Forest Soil	MSTDLGLVLERKRKAAQAQAQTEVTILLVFVIIALAMLVLLFADQTFSKAAIEFMCLI
Ga0126371_129047551	3300021560	Tropical Forest Soil	MSTDLGLVSQREGRPAQAQAQTEITMMLVFVIITLAMLVLLFADQSFSRATIELMCLF
Ga0207693_104333421	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MGLIMPTELGVVSEVKAQAQTQTLITIVLVCGIITLVMLVLLFADQSFSKATIELMCLF
Ga0209418_10118783	3300027371	Forest Soil	MPTDLGLASERKRKATQAQTQIEITILLVCVIITLAMLVLLFADQSFSKASI
Ga0209465_106308061	3300027874	Tropical Forest Soil	MPIDLGLVSERKGKAAQAQAQTEVTILLVFVIITLAMLVLLLADQSFSKATIELMCLF
Ga0318516_101870812	3300031543	Soil	MPTDLGVAAERKRKATQAQTQTEITIVLVWLIISLAMLVLLVADQSFSKATIELMSRLAP
Ga0310915_100856324	3300031573	Soil	MPTDLNVVLEHKRTATQAQKQSEITIGLVWVIVSLGMLVLLFADVSFSTQQ
Ga0318542_106342112	3300031668	Soil	LGSQPKPVTRNYPGPSLQGWLIMPTDLRVASERKRKAAQAQAQTEVTILLVFVIISLATLVLLVGDQSFSKASIETIGRIAP
Ga0318574_101381591	3300031680	Soil	MPTDLGMALERKRKATQAHTQTEITTAFVWFIICLVMLVLLFADQSLSKTTIG
Ga0306917_105756621	3300031719	Soil	MSTDLGLVSQREGRAAQAQAQTEITMMLVFVIITLAMLVLLFADQSFSKATIELMCLF
Ga0307477_103277521	3300031753	Hardwood Forest Soil	MPTDVSVASECKRKAAQAQTQIEITVVLIWIMIGLVMLVLLLADQSFSKATIELM
Ga0307477_109346221	3300031753	Hardwood Forest Soil	MPTDLGVAPERKGKAAQAETQAEVTILLVCVIITLSMLVLLFADQSFSKATIELMCLF
Ga0318509_101295521	3300031768	Soil	MPTDLGVALERKRKATQAQTQTEITIGLVWFIIYLVMLVLLFADQSFSKATIEWEC
Ga0318546_105611463	3300031771	Soil	MPTDLGVAAERKRKATQAQTQTEITIVLVWLIISLAMLVLLVADQSFS
Ga0318543_104258301	3300031777	Soil	MPTDLGVVSERKRKATQAQTQTAITILLVWFIITLATLVLLFADQSFSKATIEWECLF
Ga0318547_105521862	3300031781	Soil	MPTDLNVVLEHKRTATRAQKQSEITIGLVWVIVCLGMLVLLFADVSFSTPTIGWECL
Ga0318547_109924081	3300031781	Soil	MVWISLGWLIMPTDLGVVSERKRKATQAQTQTAITILLVWFIITLATLVLLFADQSFSKATIELMGRLAP
Ga0318550_103207791	3300031797	Soil	MPTDLGVVSARKCKATQAQTQTVATIVLVWLIISLIMLVLLFADQSFSKATIEW
Ga0318567_106321011	3300031821	Soil	SQREGRAAQAQAQTEITMMLVFVIITLAMLVLLFADQSFSKATIELMCLF
Ga0306919_103436522	3300031879	Soil	MPTDLRVASERKRKAAQAQAQTEVTILLVFVIISLATLVLLVGDQSFSKASIETIGRIAP
Ga0306925_101352573	3300031890	Soil	MPTDLNVVLEHKRTATQAQKQSEITIGLVWVIVCLGMLVLLFADVSFSTPTIGWECLLAP
Ga0306925_103199991	3300031890	Soil	MPTDLGVAAERKRKATQAQTQTEITIVLVSLIISLAMLVLLVADQSFSKATIELMSRLAP
Ga0306925_103331632	3300031890	Soil	MPTDLGVISERKRKATQAQTQTVLTILLVWFIVTLTMLVLLFADQSFSKATIELMCLF
Ga0306925_120119042	3300031890	Soil	MSTDLGLVSQREGRAAQAQAQTEITMMLVFVIITLAMLVLLCADQSFSKAAIEFMCLF
Ga0306923_103782612	3300031910	Soil	MSTDLGLVSQREGRAAQAQAQTEITMMLVFVIITLTMLVLLFADQSFSKATIELMCLF
Ga0306923_104512441	3300031910	Soil	NRFRLGITTRGRVAQAQAQTEITMMLVFVIITLAMLVLLFADQSFSKATIELMCLF
Ga0306921_102910291	3300031912	Soil	MPTDLNVVLEHKRTATQAQKQSEITIGLVWVIVSLGMLVLLFADVSFSTPTIGWECLLAP
Ga0306921_110854912	3300031912	Soil	MSTDLGLVSERQRKAAQGQAQTEVTILLLFVIITLAMLVLLFVDQSFSKATIELMCLF
Ga0310916_108097391	3300031942	Soil	MSTDLGLVSQREGRAAQGQAQTEITMMLVFVIITLAMLVLLFADQSFSKATIELMCLF
Ga0310909_102815501	3300031947	Soil	MPTDLGVISERKRKATQAQTQTVLTILLVWFIVTLTMLVLLFADQSFSKATIELM
Ga0310909_112528882	3300031947	Soil	MSTDLGLVSERERKAAQAQAQTEVTILLVSVIIALAMLVLLFADQSFSKAAIEFMCLF
Ga0306926_106875173	3300031954	Soil	MPTDLRVASERKRKAAQAQAQTEVTILLVFVIISLATLVLLVGDQSFSKASIEMIGRLAP
Ga0306926_126183712	3300031954	Soil	MPTDLGALSERKRKATQAETQTEVTILLVFVIITLAMLVLLVADQSFSKATIEVMGRLAP
Ga0307479_117184062	3300031962	Hardwood Forest Soil	AGVGWLIMPTDLGAASERKRKAAQAQAQTETTILLVVVIISLVTLVLLVADQSFASVTIEMTGLLAP
Ga0310911_106327892	3300032035	Soil	QRKAAQGQAQTEVTILLLFVIITLAMLVLLFVDQSFSKATIELMCLF
Ga0318558_105395281	3300032044	Soil	MPTDLGVVSERKHKATQAQTQTAITILLVWFIITLATLVLLFADQSFSKATIELMGRLAP
Ga0318532_101005861	3300032051	Soil	LGVAAERKRKATQAQTQTEITIVLVSLIISLAMLVLLVADQSFSKATIELMSRLAP
Ga0318506_102557891	3300032052	Soil	PRIWIIMPTDLGVASERKRKATQAQRQTEITVLLVYLIVSLVMIMLLVADQSFSKAAIELVSRLSP
Ga0318510_101241653	3300032064	Soil	MPTDLGVVSARKCKATQAQTQTVATIVLVWLIISLIMLVLLFADQSFSKATIEWE
Ga0318514_105460722	3300032066	Soil	MPTDLGMALERKRKATQAQTQTEITIGLVWFIIYLVMLVLLFADQSFSKATIEWECLLAP
Ga0306924_105790081	3300032076	Soil	MPTDLRVASERKRKAAQAQAQTEVTILLVFVIISLATLVLLVGDQSVSKESIEMIGRLAP
Ga0318518_107289751	3300032090	Soil	MSTDLGLVLERKRKAAQAQAQTEVTILLVSVIIALAMLVLLFADQSFSKAAIEFMCLF
Ga0318540_101292671	3300032094	Soil	MPTDLGMALERKRKATQAHTQTEITTAFVWFIICLVMLVLLFADQSLSKTTI
Ga0307471_1009236731	3300032180	Hardwood Forest Soil	MPTDLGLASERKRKATQAQTQIEITILLVCVIITLAMLVLLFADQSFSKASIELMGRLGP
Ga0307471_1035861771	3300032180	Hardwood Forest Soil	YAGVGWLIMRTDLGAAALAQAQTETTILLVFVIISLVALVLLVADQSFSKASIELLGRLA
Ga0306920_1001618755	3300032261	Soil	MSTDLGLVSQREGRAAQAQAQTEITMMLVFVIITLAMLVLLCADQSFSKATIELMCLF
Ga0318519_104816341	3300033290	Soil	QREGRAAQAQAQTEITMMLVFVIITLAMLVLLFADQSFSKATIELMCLF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F069281

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences