NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F069300

Metagenome / Metatranscriptome Family F069300

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F069300
Family Type Metagenome / Metatranscriptome
Number of Sequences 124
Average Sequence Length 42 residues
Representative Sequence GGFAMMPSKAMHWFTCKSKDTCLMFVTFDRKYDIVWAKPQK
Number of Associated Samples 106
Number of Associated Scaffolds 124

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 6.45 %
% of genes near scaffold ends (potentially truncated) 92.74 %
% of genes from short scaffolds (< 2000 bps) 87.10 %
Associated GOLD sequencing projects 98
AlphaFold2 3D model prediction Yes
3D model pTM-score0.17

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (97.581 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(35.484 % of family members)
Environment Ontology (ENVO) Unclassified
(32.258 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(50.000 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 4.35%    β-sheet: 0.00%    Coil/Unstructured: 95.65%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.17
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 124 Family Scaffolds
PF03551PadR 7.26
PF12704MacB_PCD 5.65
PF04185Phosphoesterase 5.65
PF05163DinB 2.42
PF02687FtsX 2.42
PF02129Peptidase_S15 1.61
PF10282Lactonase 1.61
PF07883Cupin_2 1.61
PF06283ThuA 1.61
PF04255DUF433 0.81
PF11008DUF2846 0.81
PF13847Methyltransf_31 0.81
PF08281Sigma70_r4_2 0.81
PF07228SpoIIE 0.81
PF07805Obsolete Pfam Family 0.81
PF17170DUF5128 0.81
PF00174Oxidored_molyb 0.81
PF01738DLH 0.81
PF12623Hen1_L 0.81
PF13701DDE_Tnp_1_4 0.81
PF08818DUF1801 0.81
PF00563EAL 0.81
PF01381HTH_3 0.81
PF00239Resolvase 0.81
PF04952AstE_AspA 0.81
PF00990GGDEF 0.81
PF00480ROK 0.81
PF06197DUF998 0.81
PF13231PMT_2 0.81
PF13557Phenol_MetA_deg 0.81
PF01663Phosphodiest 0.81
PF03773ArsP_1 0.81
PF13365Trypsin_2 0.81

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 124 Family Scaffolds
COG1695DNA-binding transcriptional regulator, PadR familyTranscription [K] 7.26
COG1733DNA-binding transcriptional regulator, HxlR familyTranscription [K] 7.26
COG1846DNA-binding transcriptional regulator, MarR familyTranscription [K] 7.26
COG3511Phospholipase CCell wall/membrane/envelope biogenesis [M] 5.65
COG2318Bacillithiol/mycothiol S-transferase BstA/DinB, DinB/YfiT family (unrelated to E. coli DinB)Secondary metabolites biosynthesis, transport and catabolism [Q] 2.42
COG1940Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domainTranscription [K] 1.61
COG4813Trehalose utilization proteinCarbohydrate transport and metabolism [G] 1.61
COG0701Uncharacterized membrane protein YraQ, UPF0718 familyFunction unknown [S] 0.81
COG1961Site-specific DNA recombinase SpoIVCA/DNA invertase PinEReplication, recombination and repair [L] 0.81
COG2041Molybdopterin-dependent catalytic subunit of periplasmic DMSO/TMAO and protein-methionine-sulfoxide reductasesEnergy production and conversion [C] 0.81
COG2200EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)Signal transduction mechanisms [T] 0.81
COG2442Predicted antitoxin component of a toxin-antitoxin system, DUF433 familyDefense mechanisms [V] 0.81
COG2452Predicted site-specific integrase-resolvaseMobilome: prophages, transposons [X] 0.81
COG3371Uncharacterized membrane proteinFunction unknown [S] 0.81
COG3434c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domainsSignal transduction mechanisms [T] 0.81
COG3915Uncharacterized conserved proteinFunction unknown [S] 0.81
COG4430Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 familyFunction unknown [S] 0.81
COG4943Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domainsSignal transduction mechanisms [T] 0.81
COG5001Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domainSignal transduction mechanisms [T] 0.81
COG5646Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis)Posttranslational modification, protein turnover, chaperones [O] 0.81
COG5649Uncharacterized conserved protein, DUF1801 domainFunction unknown [S] 0.81

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms97.58 %
UnclassifiedrootN/A2.42 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001593|JGI12635J15846_10890761All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium508Open in IMG/M
3300001661|JGI12053J15887_10262378All Organisms → cellular organisms → Bacteria855Open in IMG/M
3300002917|JGI25616J43925_10172571All Organisms → cellular organisms → Bacteria852Open in IMG/M
3300005174|Ga0066680_10370258All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium912Open in IMG/M
3300005332|Ga0066388_101739588All Organisms → cellular organisms → Bacteria1105Open in IMG/M
3300005536|Ga0070697_101511065All Organisms → cellular organisms → Bacteria600Open in IMG/M
3300005555|Ga0066692_10032619All Organisms → cellular organisms → Bacteria2773Open in IMG/M
3300005559|Ga0066700_10736307All Organisms → cellular organisms → Bacteria672Open in IMG/M
3300005560|Ga0066670_10910533All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium535Open in IMG/M
3300005568|Ga0066703_10160686All Organisms → cellular organisms → Bacteria1352Open in IMG/M
3300005602|Ga0070762_10995364All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium575Open in IMG/M
3300005921|Ga0070766_10342514All Organisms → cellular organisms → Bacteria → Acidobacteria969Open in IMG/M
3300006034|Ga0066656_10585862All Organisms → cellular organisms → Bacteria → Acidobacteria722Open in IMG/M
3300006162|Ga0075030_101316486All Organisms → cellular organisms → Bacteria → Acidobacteria566Open in IMG/M
3300006172|Ga0075018_10013920All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria3019Open in IMG/M
3300006174|Ga0075014_100971923All Organisms → cellular organisms → Bacteria513Open in IMG/M
3300006796|Ga0066665_10567950All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae919Open in IMG/M
3300006893|Ga0073928_10049732All Organisms → cellular organisms → Bacteria3792Open in IMG/M
3300007258|Ga0099793_10350848All Organisms → cellular organisms → Bacteria → Acidobacteria721Open in IMG/M
3300007788|Ga0099795_10086401All Organisms → cellular organisms → Bacteria → Acidobacteria1209Open in IMG/M
3300007788|Ga0099795_10541501All Organisms → cellular organisms → Bacteria547Open in IMG/M
3300009038|Ga0099829_10328184All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1258Open in IMG/M
3300009088|Ga0099830_10343147All Organisms → cellular organisms → Bacteria → Acidobacteria1200Open in IMG/M
3300009088|Ga0099830_11836465All Organisms → cellular organisms → Bacteria → Acidobacteria506Open in IMG/M
3300009089|Ga0099828_10200805All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium1779Open in IMG/M
3300009090|Ga0099827_10205486Not Available1640Open in IMG/M
3300009143|Ga0099792_10792532All Organisms → cellular organisms → Bacteria → Acidobacteria620Open in IMG/M
3300009177|Ga0105248_10156549All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2571Open in IMG/M
3300010047|Ga0126382_10934639All Organisms → cellular organisms → Bacteria754Open in IMG/M
3300010048|Ga0126373_10239705All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. WH151779Open in IMG/M
3300010301|Ga0134070_10272934All Organisms → cellular organisms → Bacteria → Acidobacteria638Open in IMG/M
3300010337|Ga0134062_10584610All Organisms → cellular organisms → Bacteria → Acidobacteria573Open in IMG/M
3300010358|Ga0126370_11321495All Organisms → cellular organisms → Bacteria → Acidobacteria677Open in IMG/M
3300010376|Ga0126381_101598655All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium942Open in IMG/M
3300011269|Ga0137392_10412485All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1121Open in IMG/M
3300011269|Ga0137392_11240249All Organisms → cellular organisms → Bacteria604Open in IMG/M
3300011270|Ga0137391_10243762All Organisms → cellular organisms → Bacteria → Acidobacteria1559Open in IMG/M
3300012096|Ga0137389_10169420All Organisms → cellular organisms → Bacteria → Acidobacteria1801Open in IMG/M
3300012189|Ga0137388_11979055All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium511Open in IMG/M
3300012198|Ga0137364_10874067All Organisms → cellular organisms → Bacteria680Open in IMG/M
3300012202|Ga0137363_10004507All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae8549Open in IMG/M
3300012202|Ga0137363_10171912All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium1719Open in IMG/M
3300012202|Ga0137363_10625088All Organisms → cellular organisms → Bacteria910Open in IMG/M
3300012208|Ga0137376_10172262All Organisms → cellular organisms → Bacteria → Acidobacteria1867Open in IMG/M
3300012211|Ga0137377_10075103All Organisms → cellular organisms → Bacteria → Acidobacteria3171Open in IMG/M
3300012361|Ga0137360_11238607All Organisms → cellular organisms → Bacteria → Acidobacteria645Open in IMG/M
3300012361|Ga0137360_11269624All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium636Open in IMG/M
3300012362|Ga0137361_10011156All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae6450Open in IMG/M
3300012582|Ga0137358_10115828All Organisms → cellular organisms → Bacteria → Acidobacteria1819Open in IMG/M
3300012683|Ga0137398_10135783All Organisms → cellular organisms → Bacteria → Acidobacteria1584Open in IMG/M
3300012683|Ga0137398_10644288All Organisms → cellular organisms → Bacteria → Acidobacteria734Open in IMG/M
3300012685|Ga0137397_11276562All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium524Open in IMG/M
3300012917|Ga0137395_10762789All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium700Open in IMG/M
3300012918|Ga0137396_10698391All Organisms → cellular organisms → Bacteria → Acidobacteria748Open in IMG/M
3300012923|Ga0137359_10332544All Organisms → cellular organisms → Bacteria → Acidobacteria1351Open in IMG/M
3300012923|Ga0137359_10598771All Organisms → cellular organisms → Bacteria → Acidobacteria967Open in IMG/M
3300012924|Ga0137413_10654200All Organisms → cellular organisms → Bacteria → Acidobacteria792Open in IMG/M
3300012925|Ga0137419_11282391All Organisms → cellular organisms → Bacteria → Acidobacteria615Open in IMG/M
3300012927|Ga0137416_10943306All Organisms → cellular organisms → Bacteria → Acidobacteria769Open in IMG/M
3300014166|Ga0134079_10003899All Organisms → cellular organisms → Bacteria → Acidobacteria4242Open in IMG/M
3300015054|Ga0137420_1393876All Organisms → cellular organisms → Bacteria → Acidobacteria1010Open in IMG/M
3300015374|Ga0132255_106290271All Organisms → cellular organisms → Bacteria → Acidobacteria502Open in IMG/M
3300016270|Ga0182036_10096826Not Available1995Open in IMG/M
3300016270|Ga0182036_10334677All Organisms → cellular organisms → Bacteria → Proteobacteria1162Open in IMG/M
3300016357|Ga0182032_10041445All Organisms → cellular organisms → Bacteria2914Open in IMG/M
3300016422|Ga0182039_10285226All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1361Open in IMG/M
3300017972|Ga0187781_10178601All Organisms → cellular organisms → Bacteria → Acidobacteria1495Open in IMG/M
3300017973|Ga0187780_10908515All Organisms → cellular organisms → Bacteria639Open in IMG/M
3300018431|Ga0066655_10308337All Organisms → cellular organisms → Bacteria → Acidobacteria1032Open in IMG/M
3300020140|Ga0179590_1054247All Organisms → cellular organisms → Bacteria → Acidobacteria1037Open in IMG/M
3300020579|Ga0210407_10596003All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium861Open in IMG/M
3300020579|Ga0210407_10604887All Organisms → cellular organisms → Bacteria → Acidobacteria854Open in IMG/M
3300020579|Ga0210407_10903173All Organisms → cellular organisms → Bacteria → Acidobacteria677Open in IMG/M
3300020580|Ga0210403_10006182All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis10069Open in IMG/M
3300020580|Ga0210403_10686264All Organisms → cellular organisms → Bacteria821Open in IMG/M
3300020581|Ga0210399_10065957All Organisms → cellular organisms → Bacteria → Acidobacteria2926Open in IMG/M
3300020581|Ga0210399_10409230All Organisms → cellular organisms → Bacteria1131Open in IMG/M
3300020583|Ga0210401_10914337All Organisms → cellular organisms → Bacteria736Open in IMG/M
3300021171|Ga0210405_10575618All Organisms → cellular organisms → Bacteria → Acidobacteria878Open in IMG/M
3300021420|Ga0210394_11651133All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium538Open in IMG/M
3300021432|Ga0210384_11858107All Organisms → cellular organisms → Bacteria → Acidobacteria508Open in IMG/M
3300021478|Ga0210402_10319959All Organisms → cellular organisms → Bacteria → Acidobacteria1438Open in IMG/M
3300021479|Ga0210410_10265439All Organisms → cellular organisms → Bacteria1540Open in IMG/M
3300021559|Ga0210409_10010869All Organisms → cellular organisms → Bacteria9146Open in IMG/M
3300021560|Ga0126371_11334446All Organisms → cellular organisms → Bacteria → Acidobacteria850Open in IMG/M
3300026297|Ga0209237_1141721All Organisms → cellular organisms → Bacteria → Acidobacteria957Open in IMG/M
3300026313|Ga0209761_1010789All Organisms → cellular organisms → Bacteria → Acidobacteria5946Open in IMG/M
3300026323|Ga0209472_1174912All Organisms → cellular organisms → Bacteria → Acidobacteria771Open in IMG/M
3300026328|Ga0209802_1084541All Organisms → cellular organisms → Bacteria → Acidobacteria1463Open in IMG/M
3300026335|Ga0209804_1188701All Organisms → cellular organisms → Bacteria → Acidobacteria880Open in IMG/M
3300026482|Ga0257172_1074208All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium625Open in IMG/M
3300026482|Ga0257172_1111975All Organisms → cellular organisms → Bacteria → Acidobacteria502Open in IMG/M
3300026514|Ga0257168_1081815All Organisms → cellular organisms → Bacteria → Acidobacteria715Open in IMG/M
3300026537|Ga0209157_1079582All Organisms → cellular organisms → Bacteria → Acidobacteria1613Open in IMG/M
3300026548|Ga0209161_10257845All Organisms → cellular organisms → Bacteria → Acidobacteria898Open in IMG/M
3300026551|Ga0209648_10019637All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae5906Open in IMG/M
3300026551|Ga0209648_10115161All Organisms → cellular organisms → Bacteria → Acidobacteria2179Open in IMG/M
3300026557|Ga0179587_10504658All Organisms → cellular organisms → Bacteria794Open in IMG/M
3300027512|Ga0209179_1013481All Organisms → cellular organisms → Bacteria → Acidobacteria1486Open in IMG/M
3300027610|Ga0209528_1079418All Organisms → cellular organisms → Bacteria726Open in IMG/M
3300027671|Ga0209588_1152290All Organisms → cellular organisms → Bacteria732Open in IMG/M
3300027846|Ga0209180_10224165All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1083Open in IMG/M
3300027874|Ga0209465_10267272All Organisms → cellular organisms → Bacteria → Acidobacteria857Open in IMG/M
3300027875|Ga0209283_10342888All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae981Open in IMG/M
3300027903|Ga0209488_10348808All Organisms → cellular organisms → Bacteria → Acidobacteria1101Open in IMG/M
3300027903|Ga0209488_10659558All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium753Open in IMG/M
3300028047|Ga0209526_10375959All Organisms → cellular organisms → Bacteria → Acidobacteria947Open in IMG/M
3300028536|Ga0137415_10475393All Organisms → cellular organisms → Bacteria → Acidobacteria1056Open in IMG/M
3300029636|Ga0222749_10420723All Organisms → cellular organisms → Bacteria → Acidobacteria711Open in IMG/M
3300031446|Ga0170820_17778518All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium868Open in IMG/M
3300031680|Ga0318574_10812054All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium548Open in IMG/M
3300031754|Ga0307475_10377992All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1138Open in IMG/M
3300031777|Ga0318543_10465170All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium567Open in IMG/M
3300031835|Ga0318517_10455271All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium577Open in IMG/M
3300031879|Ga0306919_10741397All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium756Open in IMG/M
3300031890|Ga0306925_11406910All Organisms → cellular organisms → Bacteria687Open in IMG/M
3300031912|Ga0306921_10116574Not Available3108Open in IMG/M
3300031912|Ga0306921_11331395All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium793Open in IMG/M
3300031946|Ga0310910_10242455All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium1408Open in IMG/M
3300031962|Ga0307479_11222073All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium714Open in IMG/M
3300032059|Ga0318533_11138564All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium571Open in IMG/M
3300032180|Ga0307471_101163079All Organisms → cellular organisms → Bacteria → Acidobacteria936Open in IMG/M
3300032180|Ga0307471_103165335All Organisms → cellular organisms → Bacteria → Acidobacteria583Open in IMG/M
3300033289|Ga0310914_11288182All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium633Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil35.48%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil19.35%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil9.68%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil6.45%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil4.84%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil4.03%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil3.23%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil3.23%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds2.42%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil2.42%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland1.61%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil1.61%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil1.61%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring0.81%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.81%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.81%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.81%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.81%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300001661Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)EnvironmentalOpen in IMG/M
3300002917Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cmEnvironmentalOpen in IMG/M
3300005174Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005555Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141EnvironmentalOpen in IMG/M
3300005559Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149EnvironmentalOpen in IMG/M
3300005560Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119EnvironmentalOpen in IMG/M
3300005568Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152EnvironmentalOpen in IMG/M
3300005602Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2EnvironmentalOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300006034Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105EnvironmentalOpen in IMG/M
3300006162Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012EnvironmentalOpen in IMG/M
3300006172Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014EnvironmentalOpen in IMG/M
3300006174Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014EnvironmentalOpen in IMG/M
3300006796Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114EnvironmentalOpen in IMG/M
3300006893Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaGEnvironmentalOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300007788Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009143Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2EnvironmentalOpen in IMG/M
3300009177Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaGHost-AssociatedOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010301Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015EnvironmentalOpen in IMG/M
3300010337Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012683Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012924Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014166Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015EnvironmentalOpen in IMG/M
3300015054Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300016270Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080EnvironmentalOpen in IMG/M
3300016357Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000EnvironmentalOpen in IMG/M
3300016422Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111EnvironmentalOpen in IMG/M
3300017972Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300017973Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MGEnvironmentalOpen in IMG/M
3300018431Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104EnvironmentalOpen in IMG/M
3300020140Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300026297Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026313Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026323Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)EnvironmentalOpen in IMG/M
3300026328Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)EnvironmentalOpen in IMG/M
3300026335Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)EnvironmentalOpen in IMG/M
3300026482Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-BEnvironmentalOpen in IMG/M
3300026514Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-BEnvironmentalOpen in IMG/M
3300026537Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)EnvironmentalOpen in IMG/M
3300026548Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)EnvironmentalOpen in IMG/M
3300026551Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)EnvironmentalOpen in IMG/M
3300026557Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungalEnvironmentalOpen in IMG/M
3300027512Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes)EnvironmentalOpen in IMG/M
3300027610Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027671Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)EnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027874Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300027875Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027903Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)EnvironmentalOpen in IMG/M
3300028047Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300029636Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031446Fir Summer Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031680Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22EnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300031777Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24EnvironmentalOpen in IMG/M
3300031835Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21EnvironmentalOpen in IMG/M
3300031879Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)EnvironmentalOpen in IMG/M
3300031890Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)EnvironmentalOpen in IMG/M
3300031912Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)EnvironmentalOpen in IMG/M
3300031946Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032059Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300033289Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12635J15846_1089076123300001593Forest SoilGGFAMMPSKAPHWFICTAKEECLMFVTFDRAYDIVWLKPNK*
JGI12053J15887_1026237813300001661Forest SoilMMPSKAMHWFTCKSKDTCLMFVTFDRKYDIVWAKPAK*
JGI25616J43925_1017257113300002917Grasslands SoilMAEATLGPGGFAMMPSKAMHWFTCKSKDTCLMFVTFDRKYDIVWAQPPK*
Ga0066680_1037025833300005174SoilGPGGFAMMPSKAPHWFTCTAKEECLMFVTFDRAYDIVWLKPNK*
Ga0066388_10173958823300005332Tropical Forest SoilILGPGGFAMMPSKQPHWFTCTAKEECLMFVTFDRAYDIVWLKPNS*
Ga0070697_10151106523300005536Corn, Switchgrass And Miscanthus RhizosphereMAEATLGPGGFAMMPSKAMHWFTCQSKSTCLMFVTFDRTYDIVWAQPGK*
Ga0066692_1003261923300005555SoilEATLGPGGFAMMPSKAMHWFTCKSKDTCLMFVTFDRTYDIVWAKPQK*
Ga0066700_1073630723300005559SoilATLGPGGFAMMPSKAMHWFTCKSKDTCLMFVTFDRKYDIVWAKTPK*
Ga0066670_1091053313300005560SoilVLHAGGFAMMPSKAVHWFSCTAKEECVMFVTFDRVYDIVWVKQNK*
Ga0066703_1016068623300005568SoilTLGPGGFAMMPSKAMHWFTCKSKDTCLMFVTFDRKYDIVWAKPPK*
Ga0070762_1099536413300005602SoilAMMPSKAMHWFTCKSKNTCLMFVTFDRTYDIVWAKQAK*
Ga0070766_1034251443300005921SoilPGGFAMMPSKAMHWFTCKSKNTCLMFVTFDRTYDIVWAKQPK*
Ga0066656_1058586213300006034SoilMASKQVHWFSCTAKEECLMFVTFDRAYDIVWVKQSK*
Ga0075030_10131648613300006162WatershedsGGFAMMPSKAMHWFTCKSKNTCLMFVTFDGTYDIVWAKQAK*
Ga0075018_1001392033300006172WatershedsMMPGKAMHWFTCQSKDACLMFVTFDRTYDIVWAKPQK*
Ga0075014_10097192323300006174WatershedsGPGGFAMMPSKAMHWFTCKSRDTCLMFVTFDRKYDIVWAKPQK*
Ga0066665_1056795033300006796SoilFAMMPSKAPHWFTCTAKEECLMFVTFDRAYDIVWIKPGK*
Ga0073928_1004973213300006893Iron-Sulfur Acid SpringFAMMPSKQPHWFTCTAQEECLMFVTFDRAYDIVWLKPSK*
Ga0099793_1035084813300007258Vadose Zone SoilTLGPGGFAMMPSKAMHWFTCKSKDTCLMFVTFDRMYDIVWAKPQK*
Ga0099795_1008640113300007788Vadose Zone SoilGGFAMMPSKAPHWFTCTAKEECLMFVTFDRAYDIVWIKPDK*
Ga0099795_1054150113300007788Vadose Zone SoilPGGFAMMPSKAPHWFTCTAKEECLMFVTFDRAYDIVWIKPDK*
Ga0099829_1032818423300009038Vadose Zone SoilMPDTVLGPGGFAMMPSKQPHWFTCTAKEECLMFVSFDRPYDIVWLTPNK*
Ga0099830_1034314713300009088Vadose Zone SoilSKAPHWFTCTAKEECLMFVTFDRAYDIVWIKPDK*
Ga0099830_1183646523300009088Vadose Zone SoilGGFAMMPSKAMHWFTCKSKDTCLMFVTFDRKYDIVWAKPQK*
Ga0099828_1020080513300009089Vadose Zone SoilMMPSKEKHWFSCKSKDGCLMFVTFDRVYDIFWVK*
Ga0099827_1020548643300009090Vadose Zone SoilMMPGKAMHWFSCKSKEPCLMFVTFDRAYDIVWAKPQK*
Ga0099792_1079253213300009143Vadose Zone SoilVLGPGGFAMMPSKAPHWFTCTAKEECLMFVTFDRAYDIVWIKPDK*
Ga0105248_1015654943300009177Switchgrass RhizosphereLEPGGFAMMPGKQTHWFTCMSKEGCLMFVTFDRTYDIVWVKDEK*
Ga0126382_1093463923300010047Tropical Forest SoilDTVLGPGGFAMMPSKQPHWFACTAKEECLMFVTFDRPYDIVWLKPNK*
Ga0126373_1023970533300010048Tropical Forest SoilDTVLGPGGFAMMPSKQPHWFTCTPQEECLMFVTFDRPYDIVWLKPNK*
Ga0134070_1027293423300010301Grasslands SoilPSKAMHWFTCKSKDTCLMFVTFDRKYDIVWAKPPK*
Ga0134062_1058461023300010337Grasslands SoilAMMPGKETHWFTCMSKEGCLMFVTFDRAYDIVWVKQSK*
Ga0126370_1132149513300010358Tropical Forest SoilMSEMVLGAGGFAMMPSKQVHWFTCTSKDSCLMFVTFDRKYDITWVKDKK*
Ga0126381_10159865513300010376Tropical Forest SoilMMPSKRPHWFTCMATEECLMFVTFDRAYDIVWLKPNK*
Ga0137392_1041248513300011269Vadose Zone SoilLQAGGFAMMPGKEKHWFSCKSKDSCLMFVTFDRAYDIFWVK*
Ga0137392_1124024913300011269Vadose Zone SoilPGGFAMMPSKAPHWFTCTAKEECLMFVTFDRAYDIVWLKPTK*
Ga0137391_1024376213300011270Vadose Zone SoilPGGFAMMPSKAMHWFTCKSKDTCLMFVTFDRKYDIVWAKPQK*
Ga0137389_1016942023300012096Vadose Zone SoilPGGFAMMPSKAMHWFTCKSKDSCLMFVTFDRTYDIVWAKPQK*
Ga0137388_1197905523300012189Vadose Zone SoilPSKAMHWFTCKSKVTCLMFVTFDRKYDIVWAQPAK*
Ga0137364_1087406713300012198Vadose Zone SoilMAEATLGPGGFALMPSKAMHCFTCKLKNTCLMFVTFDRTYDIVWAKQAK*
Ga0137363_1000450713300012202Vadose Zone SoilGFAMMPSKTMHWFSCKSKDACLMFVTFDRTYDIVWAKPQK*
Ga0137363_1017191213300012202Vadose Zone SoilMMPSKAPHWFTCTAKEECLMFVTFDRAYDIVWLKPSK*
Ga0137363_1062508823300012202Vadose Zone SoilMAETTLGPGGFAMMPGKAMHWFSCKSKDACLMFVTFDRKYDIVWAQPAK*
Ga0137376_1017226223300012208Vadose Zone SoilLGPGGFAMMPSKAMHWFTCKSKNTCLMFVTFDRTYDIVWAKQAK*
Ga0137377_1007510323300012211Vadose Zone SoilSKAMHWFSCKSKDTCLMFVTFDRTYDIVWAKPQK*
Ga0137360_1123860723300012361Vadose Zone SoilLGPGGFAMMPSKAMHWFTCKSKEPCLMFVTFDRTYDIVWAKPQK*
Ga0137360_1126962413300012361Vadose Zone SoilGGFAMMPSKQPHWFTCTAKEECLMFVTFDRAYDIVWLKPNK*
Ga0137361_1001115683300012362Vadose Zone SoilFAMMPSKAMHWFTCKSKVTCLMFVTFDRKYDIVWAQPAK*
Ga0137358_1011582813300012582Vadose Zone SoilGPGGFAMMPSKAMHWFTCKSKDTCLMFVMFDRKYDIVWAKPQK*
Ga0137398_1013578313300012683Vadose Zone SoilMKDAVLGPGGFAMMPSKAPHWFTCTAKEECLMFVTFDRAYDIVWIKPDK*
Ga0137398_1064428823300012683Vadose Zone SoilGGFAMMPSKAMHWFTCKSKDTCLMFVTFDRTYDIVWANPQR*
Ga0137397_1127656213300012685Vadose Zone SoilETTMGPGGFAMMPSKAMHWFTCKSKDTCLMFVAFDRKYDIVWAKPGK*
Ga0137395_1076278913300012917Vadose Zone SoilMQDTVLGPGGFAMMPSKQPHWFTCTAKEECLMFVSLDRPYDIVWLTPNK*
Ga0137396_1069839113300012918Vadose Zone SoilFAMMPSKTMHWFTCKSKDSCQMFVTFDRTYDIVWAKPQK*
Ga0137359_1033254413300012923Vadose Zone SoilGFAMMPSKAMHWFTCKSKDTCLMFVTFDRKYDIVWAKPQK*
Ga0137359_1059877113300012923Vadose Zone SoilATLGPGGFAMMPSKAMHWFTCKSKDSCQMFVTFDRAYDIVWAKPQK*
Ga0137413_1065420023300012924Vadose Zone SoilAMMPSKAMHWFTCKSKDTCLMFVTFDRTYDIVWANPKK*
Ga0137419_1128239123300012925Vadose Zone SoilGFAMMPSKAPHWFTCTAKEECLMFVTFDRAYDIVWIKPDK*
Ga0137416_1094330623300012927Vadose Zone SoilPGGFAMMPSKAMHWFTCQSKDASLMFVTFDRTYDIVWAKTQK*
Ga0134079_1000389913300014166Grasslands SoilGGFAMMPSKQPHWFTCTVKEECLMFVTFDRAYDIVWLKSNK*
Ga0137420_139387623300015054Vadose Zone SoilTLGPGGFAMMPSKAMHWFSCQSKSPCLMFVTFDRKYDIVWAKPQK*
Ga0132255_10629027113300015374Arabidopsis RhizosphereMMPGKMTHWFTCTNGSKDGCLMFVTFDQKYDIVWVKDEKK*
Ga0182036_1009682633300016270SoilLGPGGFAMMPSKQPHWFTCTAQEECLMFVTFDRPYDIVWLKPNK
Ga0182036_1033467733300016270SoilLGPGGFAMMPSKQPHWFTCTAEEECLMFVTFDRPYDIVWLKSNK
Ga0182032_1004144513300016357SoilFAMMPSKRPHWFACMATEECLMFVTFDRAYDIVWLKPNK
Ga0182039_1028522613300016422SoilVLGPGGFAMMPSKQPHWFTCTAQEECLMFVTFDRPYDIVWLEPNK
Ga0187781_1017860133300017972Tropical PeatlandEDGGFAMMPSKVKHQLSCRSKDGCLLFVTFDRSYDIFWVNQQK
Ga0187780_1090851513300017973Tropical PeatlandGMAARSLGPGGFAVMPSKAKHQFACDSKSECILFVTFDRKYDIVWVKTDAK
Ga0066655_1030833723300018431Grasslands SoilMMASKQVHWFSCTAKEECLMFVTFDRAYDIVWVKQSK
Ga0179590_105424723300020140Vadose Zone SoilAMMPSKAMHWFTCKSKDSCQMFVTFDRTYDIVWAKPQK
Ga0210407_1059600323300020579SoilGFAMMPSKEKHWFSCKSKDGCLMFVTFDRAYDIFWVK
Ga0210407_1060488713300020579SoilFAMMPSKAMHWFTCKSKNTCLMFVTFDRTYDIVWAKQAK
Ga0210407_1090317323300020579SoilPSKAMHWFTCKSKDTCLMFVTFDRKYDIVWAKPPK
Ga0210403_1000618213300020580SoilTLGPGGFAMMPSKAMHWFTCKSKNTCLMFVTFDRTYDIVWAKQAK
Ga0210403_1068626423300020580SoilGGFAMMPGKAMHWFTCQSKGACLMFVTFDSKYDIVWAKPRK
Ga0210399_1006595713300020581SoilGFAMMPSKAMHWFTCKSKDTCLMFVTFDRKYDIVWAKPQK
Ga0210399_1040923013300020581SoilQTLGPGGFAMMPGKAMHWFTCQSKSPCLMFVTFDRTYDITWAKPQK
Ga0210401_1091433733300020583SoilTLGPGGFAMMPGKAMHWFTCQSKSPCLMFVTFDRSYDITWAKPQK
Ga0210405_1057561813300021171SoilDTVLGPGGFAMMPSKAPHWFTCTAREECLMFVTFDRAYDIVWLKPGK
Ga0210394_1165113323300021420SoilGFAMMASKQPHWFTCTAKEECLMFVTFDRAYDIVWLKPNK
Ga0210384_1185810713300021432SoilTLGPGGFAMMPGKAMHWFSCQSKGACLMFVTFNAKYDIVWAKPQK
Ga0210402_1031995933300021478SoilMMPSKVKHRFSCESKNECIMFVTFDRKYDIVWLKPTPQSDVK
Ga0210410_1026543943300021479SoilGGFAMMPSKAMHWFTCKSKNTCLMFVTFDRTYDIVWAKQAK
Ga0210409_1001086913300021559SoilPSKAMHWFTCKSKNTCLMFVTFDRTYDIVWAKQAK
Ga0126371_1133444613300021560Tropical Forest SoilMMASKQVHWFSCTAKEECLMFVTFDRAYDIVWVKDKK
Ga0209237_114172123300026297Grasslands SoilATLGPGGFAMMPSKAMHWFTCKSKDTCLMFVTFDRTYDIVWAKPQK
Ga0209761_101078963300026313Grasslands SoilPSKAMHWFTCKSKDTCLMFVTFDRTYDIVWAKPQK
Ga0209472_117491213300026323SoilLGPGGFAMMPSKAMHWFTCKSKDTCLMFVTFDRKYDIVWAKPQK
Ga0209802_108454123300026328SoilMMPSKAMHWFTCKSKDTCLMFVTFDRKYDIVWAKTPK
Ga0209804_118870113300026335SoilFAMMPSKAMHWFTCKSKDTCLMFVTFDRTYDIVWAKPQK
Ga0257172_107420813300026482SoilSPRILQAGGFAMMSGKEKHWFSCKSKDSCLMFVTFDRAYDIFWVK
Ga0257172_111197513300026482SoilTLGPGGFAMMPSKAMHWFSCKSKDTCLMFVTFDRKYDIVWAKPQK
Ga0257168_108181523300026514SoilGGFAMMPSKQPHWFTCSAKEECLMFVSFDRPYDIVWLKPDK
Ga0209157_107958223300026537SoilATLGPGGFAMMPSKAMHWFTCKSKDTCLMFVTFDRTYDIVWAKPPK
Ga0209161_1025784513300026548SoilAEATLGPGGFAMMPSKAMHWFTCKSKDTCLMFVTFDRKYDIVWAKPPK
Ga0209648_1001963723300026551Grasslands SoilMMPGKAMHWFSCKSKEPCLMFVTFDRAYDIVWAKPQK
Ga0209648_1011516123300026551Grasslands SoilAEATLGPGGFAMMPSKAMHWFTCKSKDTCLMFVTFDRAYDIVWVKPQK
Ga0179587_1050465823300026557Vadose Zone SoilPGGFAMMPGKAMHWFSCKSKDACLMFVTFDRKYDIVWAQPAK
Ga0209179_101348123300027512Vadose Zone SoilGGFAMMPSKAPHWFTCTAKEECLMFVTFDRAYDIVWIKPDK
Ga0209528_107941813300027610Forest SoilGFAMMPSKQPHWFTCTAQEECLMFVTFDRAYDIVWLKPRK
Ga0209588_115229013300027671Vadose Zone SoilVLGPGGFAMMPSKAPHWFTCTAKEECLMFVTFDRAYDIVWLKPAK
Ga0209180_1022416533300027846Vadose Zone SoilMPDTVLGPGGFAMMPSKQPHWFTCTAKEECLMFVSFDRPYDIVWLTPNK
Ga0209465_1026727223300027874Tropical Forest SoilRACRMPFSAGGFAMMPSKQPHWFTCTAKEECLMFVTFDRPYDIVWAKLNK
Ga0209283_1034288833300027875Vadose Zone SoilKDTVLGPGGFAMMPSKAPHWFTCTAKEECLMFVTFDRAYDIVWLKPTK
Ga0209488_1034880823300027903Vadose Zone SoilDAVLGPGGFAMMPSKAPHWFTCTAKEECLMFVTFDRAYDIVWIKPDK
Ga0209488_1065955823300027903Vadose Zone SoilTVLGPGGFAMMPGKAPHWFTCTAKEECLMFVTFDRAYDIVWLKPGK
Ga0209526_1037595923300028047Forest SoilGGFAMMPGKATHWFTCQSKGACLMFVTFDRTYDIVWGRPQK
Ga0137415_1047539323300028536Vadose Zone SoilGMAEATLGPGGFAMMPSKAMHWFTCKSKDTCLMFVTFDRTYDIVWAKPQK
Ga0222749_1042072323300029636SoilLGPGGFAMMPSKAMHWFTCKSKDTCLMFVTFDRTYDIVWAKPQK
Ga0170820_1777851813300031446Forest SoilLMLSKAMHWFTCKSKSPCLMFVTFDRKYDIVWAKPAK
Ga0318574_1081205423300031680SoilMPNTNLGPGGFAMMPSKQPHWFTCSAKQDCLMFVTFDRAYDIVWVKKN
Ga0307475_1037799213300031754Hardwood Forest SoilMPSKAPHWFTCTAREECLMFVTFDRAYDIVWLKPGK
Ga0318543_1046517013300031777SoilRDTVLGPGGFAMMPSKQPHWFTCTAQEECLMFVTFDRPYDIVWLKPNK
Ga0318517_1045527113300031835SoilTVLGPGGFAMMPSKQPHWFTCTAQEECLMFVTFDRPYDIVWLKPNK
Ga0306919_1074139713300031879SoilMMPSKQPHWFTCTAQEECLMFVTFDRPYDIVWLKPNK
Ga0306925_1140691013300031890SoilMMPSKQPHWFTCTAKEECLMFVTFDRPYDIVWLKPNK
Ga0306921_1011657413300031912SoilDTVLGPGGFAMMPSKRPHWFACMATEECLMFVTFDRAYDIVWLKPNK
Ga0306921_1133139523300031912SoilTNLGPGGFAMMPSKQPHWFTCWAKGDCLMFVTFDRAYDIVWVKKN
Ga0310910_1024245513300031946SoilFAMMPSKQPHWFTCSAKQDCLMFVTFDRAYDIVWVKKN
Ga0307479_1122207323300031962Hardwood Forest SoilMMPSKAMHWFTCKSKDTCLMFVTFDRTYDIVWAKPPK
Ga0318533_1113856413300032059SoilGDTVLGAGGFAMMPSKQVHWFGCTAKEECVMFVTFDRAYDIVWVKDKK
Ga0307471_10116307913300032180Hardwood Forest SoilMPSKAMHWFTCKSKNTCLMFVTFDRTYDIVWAKQAK
Ga0307471_10316533523300032180Hardwood Forest SoilGFAMMPSKAMHWFTCKSKNTCLMFVTFDRTYDIVWAKQAK
Ga0310914_1128818213300033289SoilMMASKQVHWFACTAKQECLMFVTFDRPYDIVWVKDKK

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.