NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F069313

Metagenome Family F069313

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F069313
Family Type Metagenome
Number of Sequences 124
Average Sequence Length 77 residues
Representative Sequence MITTASEAVAAPARHNRVTLRKTLISCAALAAALLLAIVLMSLLGSESLPVRASLCALASFGTSTCGLTQDQFDILF
Number of Associated Samples 95
Number of Associated Scaffolds 124

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 27.87 %
% of genes near scaffold ends (potentially truncated) 98.39 %
% of genes from short scaffolds (< 2000 bps) 92.74 %
Associated GOLD sequencing projects 89
AlphaFold2 3D model prediction Yes
3D model pTM-score0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (97.581 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere
(13.710 % of family members)
Environment Ontology (ENVO) Unclassified
(43.548 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(67.742 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 50.48%    β-sheet: 0.00%    Coil/Unstructured: 49.52%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.38
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 124 Family Scaffolds
PF01497Peripla_BP_2 66.13
PF01008IF-2B 6.45
PF03721UDPG_MGDP_dh_N 1.61
PF04773FecR 0.81
PF01933CofD 0.81

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 124 Family Scaffolds
COG0614ABC-type Fe3+-hydroxamate transport system, periplasmic componentInorganic ion transport and metabolism [P] 66.13
COG4558ABC-type hemin transport system, periplasmic componentInorganic ion transport and metabolism [P] 66.13
COG4592ABC-type Fe2+-enterobactin transport system, periplasmic componentInorganic ion transport and metabolism [P] 66.13
COG4594ABC-type Fe3+-citrate transport system, periplasmic componentInorganic ion transport and metabolism [P] 66.13
COG4607ABC-type enterochelin transport system, periplasmic componentInorganic ion transport and metabolism [P] 66.13
COG01825-methylthioribose/5-deoxyribulose 1-phosphate isomerase (methionine salvage pathway), a paralog of eIF-2B alpha subunitAmino acid transport and metabolism [E] 6.45
COG1184Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta familyTranslation, ribosomal structure and biogenesis [J] 6.45
COG0240Glycerol-3-phosphate dehydrogenaseEnergy production and conversion [C] 1.61
COG0677UDP-N-acetyl-D-mannosaminuronate dehydrogenaseCell wall/membrane/envelope biogenesis [M] 1.61
COG1004UDP-glucose 6-dehydrogenaseCell wall/membrane/envelope biogenesis [M] 1.61
COG12503-hydroxyacyl-CoA dehydrogenaseLipid transport and metabolism [I] 1.61
COG1893Ketopantoate reductaseCoenzyme transport and metabolism [H] 1.61
COG0391Archaeal 2-phospho-L-lactate transferase/Bacterial gluconeogenesis factor, CofD/UPF0052 familyCarbohydrate transport and metabolism [G] 0.81

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms97.58 %
UnclassifiedrootN/A2.42 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000033|ICChiseqgaiiDRAFT_c1872062All Organisms → cellular organisms → Bacteria → Acidobacteria513Open in IMG/M
3300000531|CNBas_1003170All Organisms → cellular organisms → Bacteria → Acidobacteria916Open in IMG/M
3300000891|JGI10214J12806_13306404All Organisms → cellular organisms → Bacteria → Acidobacteria936Open in IMG/M
3300001990|JGI24737J22298_10128536All Organisms → cellular organisms → Bacteria → Acidobacteria748Open in IMG/M
3300002568|C688J35102_119730565All Organisms → cellular organisms → Bacteria → Acidobacteria760Open in IMG/M
3300004114|Ga0062593_100288159All Organisms → cellular organisms → Bacteria1389Open in IMG/M
3300004463|Ga0063356_104486452All Organisms → cellular organisms → Bacteria600Open in IMG/M
3300004479|Ga0062595_100953586All Organisms → cellular organisms → Bacteria → Acidobacteria730Open in IMG/M
3300004479|Ga0062595_101459968All Organisms → cellular organisms → Bacteria → Acidobacteria628Open in IMG/M
3300004480|Ga0062592_100445947All Organisms → cellular organisms → Bacteria1048Open in IMG/M
3300004480|Ga0062592_100506510All Organisms → cellular organisms → Bacteria → Acidobacteria999Open in IMG/M
3300004643|Ga0062591_102061650All Organisms → cellular organisms → Bacteria590Open in IMG/M
3300005093|Ga0062594_102174360All Organisms → cellular organisms → Bacteria → Acidobacteria599Open in IMG/M
3300005293|Ga0065715_10367306All Organisms → cellular organisms → Bacteria → Acidobacteria926Open in IMG/M
3300005293|Ga0065715_10384907All Organisms → cellular organisms → Bacteria902Open in IMG/M
3300005294|Ga0065705_10047036All Organisms → cellular organisms → Bacteria952Open in IMG/M
3300005336|Ga0070680_100671918All Organisms → cellular organisms → Bacteria → Acidobacteria891Open in IMG/M
3300005340|Ga0070689_100946741All Organisms → cellular organisms → Bacteria → Acidobacteria764Open in IMG/M
3300005345|Ga0070692_10234866All Organisms → cellular organisms → Bacteria → Acidobacteria1090Open in IMG/M
3300005345|Ga0070692_10252654All Organisms → cellular organisms → Bacteria → Acidobacteria1056Open in IMG/M
3300005345|Ga0070692_10838860All Organisms → cellular organisms → Bacteria → Acidobacteria631Open in IMG/M
3300005345|Ga0070692_11038635All Organisms → cellular organisms → Bacteria575Open in IMG/M
3300005406|Ga0070703_10149702All Organisms → cellular organisms → Bacteria → Acidobacteria875Open in IMG/M
3300005438|Ga0070701_10593179All Organisms → cellular organisms → Bacteria → Acidobacteria733Open in IMG/M
3300005440|Ga0070705_101213529All Organisms → cellular organisms → Bacteria → Acidobacteria622Open in IMG/M
3300005441|Ga0070700_100640316All Organisms → cellular organisms → Bacteria → Acidobacteria838Open in IMG/M
3300005444|Ga0070694_101071125All Organisms → cellular organisms → Bacteria → Acidobacteria671Open in IMG/M
3300005457|Ga0070662_101504986All Organisms → cellular organisms → Bacteria580Open in IMG/M
3300005543|Ga0070672_101974372All Organisms → cellular organisms → Bacteria → Acidobacteria525Open in IMG/M
3300005544|Ga0070686_101127583All Organisms → cellular organisms → Bacteria → Acidobacteria649Open in IMG/M
3300005545|Ga0070695_101080765All Organisms → cellular organisms → Bacteria → Acidobacteria656Open in IMG/M
3300005546|Ga0070696_100548587All Organisms → cellular organisms → Bacteria → Acidobacteria926Open in IMG/M
3300005547|Ga0070693_101158365All Organisms → cellular organisms → Bacteria → Acidobacteria592Open in IMG/M
3300005547|Ga0070693_101329363All Organisms → cellular organisms → Bacteria556Open in IMG/M
3300005549|Ga0070704_102200308All Organisms → cellular organisms → Bacteria → Acidobacteria513Open in IMG/M
3300005564|Ga0070664_100870743All Organisms → cellular organisms → Bacteria → Acidobacteria844Open in IMG/M
3300005578|Ga0068854_101799257All Organisms → cellular organisms → Bacteria562Open in IMG/M
3300005615|Ga0070702_101426735All Organisms → cellular organisms → Bacteria → Acidobacteria567Open in IMG/M
3300005616|Ga0068852_100331835All Organisms → cellular organisms → Bacteria1480Open in IMG/M
3300005617|Ga0068859_100034733All Organisms → cellular organisms → Bacteria5060Open in IMG/M
3300005617|Ga0068859_100269052All Organisms → cellular organisms → Bacteria1796Open in IMG/M
3300005617|Ga0068859_100605167All Organisms → cellular organisms → Bacteria → Acidobacteria1189Open in IMG/M
3300005618|Ga0068864_100640953All Organisms → cellular organisms → Bacteria → Acidobacteria1034Open in IMG/M
3300005618|Ga0068864_101939742All Organisms → cellular organisms → Bacteria595Open in IMG/M
3300005719|Ga0068861_102204004All Organisms → cellular organisms → Bacteria → Acidobacteria552Open in IMG/M
3300005842|Ga0068858_101204292All Organisms → cellular organisms → Bacteria → Acidobacteria745Open in IMG/M
3300005844|Ga0068862_100719163All Organisms → cellular organisms → Bacteria969Open in IMG/M
3300005844|Ga0068862_102737875All Organisms → cellular organisms → Bacteria505Open in IMG/M
3300006058|Ga0075432_10296290All Organisms → cellular organisms → Bacteria → Acidobacteria670Open in IMG/M
3300006169|Ga0082029_1267829All Organisms → cellular organisms → Bacteria → Acidobacteria1310Open in IMG/M
3300006844|Ga0075428_101683284All Organisms → cellular organisms → Bacteria → Acidobacteria662Open in IMG/M
3300006845|Ga0075421_101225165All Organisms → cellular organisms → Bacteria835Open in IMG/M
3300006845|Ga0075421_101445539All Organisms → cellular organisms → Bacteria754Open in IMG/M
3300006847|Ga0075431_101737651All Organisms → cellular organisms → Bacteria580Open in IMG/M
3300006853|Ga0075420_101097571All Organisms → cellular organisms → Bacteria → Acidobacteria684Open in IMG/M
3300006881|Ga0068865_100265729All Organisms → cellular organisms → Bacteria → Acidobacteria1360Open in IMG/M
3300006894|Ga0079215_10000608All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia8553Open in IMG/M
3300006918|Ga0079216_10318149All Organisms → cellular organisms → Bacteria → Acidobacteria931Open in IMG/M
3300006954|Ga0079219_10791236All Organisms → cellular organisms → Bacteria → Acidobacteria743Open in IMG/M
3300009098|Ga0105245_10917857All Organisms → cellular organisms → Bacteria → Acidobacteria918Open in IMG/M
3300009098|Ga0105245_12774827All Organisms → cellular organisms → Bacteria → Acidobacteria543Open in IMG/M
3300009147|Ga0114129_11498820All Organisms → cellular organisms → Bacteria → Acidobacteria829Open in IMG/M
3300009147|Ga0114129_12607099All Organisms → cellular organisms → Bacteria → Acidobacteria603Open in IMG/M
3300009147|Ga0114129_13284704All Organisms → cellular organisms → Bacteria → Acidobacteria523Open in IMG/M
3300009148|Ga0105243_10961829All Organisms → cellular organisms → Bacteria → Acidobacteria854Open in IMG/M
3300009148|Ga0105243_12745934All Organisms → cellular organisms → Bacteria → Acidobacteria533Open in IMG/M
3300009156|Ga0111538_10248448All Organisms → cellular organisms → Bacteria2252Open in IMG/M
3300009174|Ga0105241_11534809All Organisms → cellular organisms → Bacteria → Acidobacteria642Open in IMG/M
3300009789|Ga0126307_10190109All Organisms → cellular organisms → Bacteria1647Open in IMG/M
3300009840|Ga0126313_11806794All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium511Open in IMG/M
3300010036|Ga0126305_11179590All Organisms → cellular organisms → Bacteria → Acidobacteria529Open in IMG/M
3300010038|Ga0126315_10142221All Organisms → cellular organisms → Bacteria → Acidobacteria1414Open in IMG/M
3300010040|Ga0126308_11350159All Organisms → cellular organisms → Bacteria → Acidobacteria506Open in IMG/M
3300010042|Ga0126314_10019517All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes4080Open in IMG/M
3300010375|Ga0105239_11155365All Organisms → cellular organisms → Bacteria → Acidobacteria892Open in IMG/M
3300010397|Ga0134124_10853992All Organisms → cellular organisms → Bacteria → Acidobacteria913Open in IMG/M
3300010399|Ga0134127_10092775Not Available2624Open in IMG/M
3300010399|Ga0134127_10337001All Organisms → cellular organisms → Bacteria1468Open in IMG/M
3300010399|Ga0134127_13738155All Organisms → cellular organisms → Bacteria → Acidobacteria500Open in IMG/M
3300010400|Ga0134122_12054314All Organisms → cellular organisms → Bacteria → Acidobacteria611Open in IMG/M
3300010400|Ga0134122_13228026All Organisms → cellular organisms → Bacteria → Acidobacteria511Open in IMG/M
3300012022|Ga0120191_10036211All Organisms → cellular organisms → Bacteria → Acidobacteria796Open in IMG/M
3300012925|Ga0137419_10161805All Organisms → cellular organisms → Bacteria → Acidobacteria1625Open in IMG/M
3300012958|Ga0164299_11047588All Organisms → cellular organisms → Bacteria → Acidobacteria605Open in IMG/M
3300013100|Ga0157373_11375196All Organisms → cellular organisms → Bacteria → Acidobacteria536Open in IMG/M
3300014325|Ga0163163_10348371All Organisms → cellular organisms → Bacteria1537Open in IMG/M
3300014325|Ga0163163_10828480All Organisms → cellular organisms → Bacteria → Acidobacteria989Open in IMG/M
3300014968|Ga0157379_10701462All Organisms → cellular organisms → Bacteria → Acidobacteria950Open in IMG/M
3300015373|Ga0132257_103395579All Organisms → cellular organisms → Bacteria → Acidobacteria580Open in IMG/M
3300018083|Ga0184628_10048431All Organisms → cellular organisms → Bacteria2142Open in IMG/M
3300018422|Ga0190265_13851518All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium500Open in IMG/M
3300025908|Ga0207643_10098367All Organisms → cellular organisms → Bacteria1713Open in IMG/M
3300025908|Ga0207643_10107499All Organisms → cellular organisms → Bacteria1640Open in IMG/M
3300025908|Ga0207643_11000562All Organisms → cellular organisms → Bacteria → Acidobacteria541Open in IMG/M
3300025913|Ga0207695_11485618All Organisms → cellular organisms → Bacteria → Acidobacteria558Open in IMG/M
3300025922|Ga0207646_10515120All Organisms → cellular organisms → Bacteria → Acidobacteria1077Open in IMG/M
3300025925|Ga0207650_11290799All Organisms → cellular organisms → Bacteria → Acidobacteria621Open in IMG/M
3300025935|Ga0207709_10006489All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes6568Open in IMG/M
3300025935|Ga0207709_11696860All Organisms → cellular organisms → Bacteria → Acidobacteria525Open in IMG/M
3300025941|Ga0207711_11189840All Organisms → cellular organisms → Bacteria → Acidobacteria704Open in IMG/M
3300025941|Ga0207711_12078078All Organisms → cellular organisms → Bacteria → Acidobacteria511Open in IMG/M
3300025942|Ga0207689_10444472All Organisms → cellular organisms → Bacteria → Acidobacteria1083Open in IMG/M
3300025942|Ga0207689_10523890All Organisms → cellular organisms → Bacteria → Acidobacteria994Open in IMG/M
3300025960|Ga0207651_11968316All Organisms → cellular organisms → Bacteria → Acidobacteria525Open in IMG/M
3300025971|Ga0210102_1100231All Organisms → cellular organisms → Bacteria → Acidobacteria625Open in IMG/M
3300026005|Ga0208285_1019593All Organisms → cellular organisms → Bacteria → Acidobacteria554Open in IMG/M
3300026025|Ga0208778_1007089All Organisms → cellular organisms → Bacteria → Acidobacteria1035Open in IMG/M
3300026095|Ga0207676_10978796All Organisms → cellular organisms → Bacteria → Acidobacteria833Open in IMG/M
3300026095|Ga0207676_11014555All Organisms → cellular organisms → Bacteria → Acidobacteria818Open in IMG/M
3300026116|Ga0207674_11814114All Organisms → cellular organisms → Bacteria → Acidobacteria577Open in IMG/M
3300026118|Ga0207675_101070792All Organisms → cellular organisms → Bacteria → Acidobacteria826Open in IMG/M
3300026118|Ga0207675_102109811All Organisms → cellular organisms → Bacteria → Acidobacteria580Open in IMG/M
3300026142|Ga0207698_10449211All Organisms → cellular organisms → Bacteria → Acidobacteria1244Open in IMG/M
3300027266|Ga0209215_1034642All Organisms → cellular organisms → Bacteria → Acidobacteria680Open in IMG/M
3300027775|Ga0209177_10489331All Organisms → cellular organisms → Bacteria → Acidobacteria511Open in IMG/M
3300028380|Ga0268265_11716188All Organisms → cellular organisms → Bacteria → Acidobacteria634Open in IMG/M
3300028381|Ga0268264_10187584All Organisms → cellular organisms → Bacteria1882Open in IMG/M
3300031731|Ga0307405_11056093All Organisms → cellular organisms → Bacteria → Acidobacteria696Open in IMG/M
3300031824|Ga0307413_12107041All Organisms → cellular organisms → Bacteria → Acidobacteria510Open in IMG/M
3300032003|Ga0310897_10458080All Organisms → cellular organisms → Bacteria → Acidobacteria612Open in IMG/M
3300032126|Ga0307415_101258549All Organisms → cellular organisms → Bacteria → Acidobacteria699Open in IMG/M
3300033412|Ga0310810_11389952All Organisms → cellular organisms → Bacteria → Acidobacteria538Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere13.71%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere12.10%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere8.06%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil5.65%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil4.84%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil4.84%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere4.84%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere4.84%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere4.03%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil3.23%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil3.23%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere2.42%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere2.42%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.61%
Rice Paddy SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil1.61%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere1.61%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere1.61%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere1.61%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.61%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere1.61%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere1.61%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands0.81%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.81%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil0.81%
TerrestrialEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial0.81%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere0.81%
Termite NestEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest0.81%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil0.81%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.81%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil0.81%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.81%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.81%
Quercus RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Quercus Rhizosphere0.81%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere0.81%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.81%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.81%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.81%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000033Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000531Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - CNB_Illumina_AssembledHost-AssociatedOpen in IMG/M
3300000891Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soilEnvironmentalOpen in IMG/M
3300001990Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3Host-AssociatedOpen in IMG/M
3300002568Grasslands soil microbial communities from Hopland, California, USA - 2EnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300004480Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4EnvironmentalOpen in IMG/M
3300004643Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3EnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005293Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1Host-AssociatedOpen in IMG/M
3300005294Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk SoilEnvironmentalOpen in IMG/M
3300005336Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaGEnvironmentalOpen in IMG/M
3300005340Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaGEnvironmentalOpen in IMG/M
3300005345Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaGEnvironmentalOpen in IMG/M
3300005406Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaGEnvironmentalOpen in IMG/M
3300005438Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaGEnvironmentalOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005441Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaGEnvironmentalOpen in IMG/M
3300005444Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaGEnvironmentalOpen in IMG/M
3300005457Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaGHost-AssociatedOpen in IMG/M
3300005543Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaGHost-AssociatedOpen in IMG/M
3300005544Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaGEnvironmentalOpen in IMG/M
3300005545Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaGEnvironmentalOpen in IMG/M
3300005546Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaGEnvironmentalOpen in IMG/M
3300005547Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaGEnvironmentalOpen in IMG/M
3300005549Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaGEnvironmentalOpen in IMG/M
3300005564Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaGHost-AssociatedOpen in IMG/M
3300005578Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2Host-AssociatedOpen in IMG/M
3300005615Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaGEnvironmentalOpen in IMG/M
3300005616Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2Host-AssociatedOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300005618Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2Host-AssociatedOpen in IMG/M
3300005719Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2Host-AssociatedOpen in IMG/M
3300005842Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2Host-AssociatedOpen in IMG/M
3300005844Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2Host-AssociatedOpen in IMG/M
3300006058Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1Host-AssociatedOpen in IMG/M
3300006169Termite nest microbial communities from Madurai, IndiaEnvironmentalOpen in IMG/M
3300006844Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2Host-AssociatedOpen in IMG/M
3300006845Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5Host-AssociatedOpen in IMG/M
3300006847Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5Host-AssociatedOpen in IMG/M
3300006853Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4Host-AssociatedOpen in IMG/M
3300006881Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2Host-AssociatedOpen in IMG/M
3300006894Agricultural soil microbial communities from Utah to study Nitrogen management - NC ControlEnvironmentalOpen in IMG/M
3300006918Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100EnvironmentalOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009148Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaGHost-AssociatedOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009174Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaGHost-AssociatedOpen in IMG/M
3300009789Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28EnvironmentalOpen in IMG/M
3300009840Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105AEnvironmentalOpen in IMG/M
3300010036Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26EnvironmentalOpen in IMG/M
3300010038Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106EnvironmentalOpen in IMG/M
3300010040Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55EnvironmentalOpen in IMG/M
3300010042Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105BEnvironmentalOpen in IMG/M
3300010375Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaGHost-AssociatedOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300012022Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C6EnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012958Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MGEnvironmentalOpen in IMG/M
3300013100Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaGHost-AssociatedOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300014968Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaGHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300018083Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1EnvironmentalOpen in IMG/M
3300018422Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 TEnvironmentalOpen in IMG/M
3300025908Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025913Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025925Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025935Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025941Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025942Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025960Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025971Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqC_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300026005Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_101 (SPAdes)EnvironmentalOpen in IMG/M
3300026025Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_103 (SPAdes)EnvironmentalOpen in IMG/M
3300026095Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026116Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026118Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026142Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300027266Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027775Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)EnvironmentalOpen in IMG/M
3300028380Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028381Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300031731Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1Host-AssociatedOpen in IMG/M
3300031824Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2Host-AssociatedOpen in IMG/M
3300032003Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1EnvironmentalOpen in IMG/M
3300032126Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2Host-AssociatedOpen in IMG/M
3300033412Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NCEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
ICChiseqgaiiDRAFT_187206213300000033SoilMTXTLSDHAAAVALRRNRVTLRRTLVSCAVMALALLLAVILLSLVGSEQLPVRPSLCALLSLGTSPCGLTQDQFDILFQIR
CNBas_100317023300000531Quercus RhizosphereVITMASDSSEMFVTARARPGRVTFRKTLIACASLAAALVLAIVIMSLLGSESLPVRASLCALASLGNAPCGLTSDQFDILFQIRLPRILLAAAVGGSLAT
JGI10214J12806_1330640423300000891SoilVSSTASGLVNSTTRQNRVTLRKTVISCLALAGALLLAIVLTSLIGSEQLPARASLCALASFGTAPCGLSREQFDI
JGI24737J22298_1012853623300001990Corn RhizosphereMNRVTLRKTLISCALLGAVLLLAIVSMSLLGSERLPARASLCALASLGSSACGLTQDQF
C688J35102_11973056513300002568SoilMITNASETIASPAPPNRVTLRKTVVSCAVLAAALLLAILVMSLLGSEPLPVRASLCALASFGTSTCGLSQDQFDI
Ga0062593_10028815923300004114SoilMTVALSNPVVAMRRGRVTLRKTLISCAALAAALLLALLLLSLIGSEQLPARSSLCALLSFGTNSCGLTPDQFDILFQIRVPRLLLAA
Ga0063356_10448645213300004463Arabidopsis Thaliana RhizosphereMIVALSDSAGEIAMRRDRVTLRKTLVSCAALAIVLLLAVILLSLVGSESLPVRSSLCALLSLGTSPCGLTQDQFDILFQIRLPRIV
Ga0062595_10095358613300004479SoilMIGTASEIAVPTARRNRVTPRKTVISCAVLAAALTLAIVLMSLVGSEPLPAGSSLCALASLGTSMCGLTQGQ
Ga0062595_10145996813300004479SoilMISNASETIASPARLNRVTLRKTVVACAVLAALLVLTIVLMSLLGSEPLPLRASLCALASFEMSPCGLSQDQFDILFQIR
Ga0062592_10044594713300004480SoilMTPRVTLRRTLIACGLLAIALVLAVVIMSLLGSESLPARASLCAIASLGTSDCGLSRDHYDILFQIRLPRILLAAAVGGSLATA
Ga0062592_10050651023300004480SoilMMNSASGIVVTTERPNRVTLRKTVISCALLAGALLLAIVFMALVGSESLPVRASLCALTSLGATPCGLTSDQFDILFQI
Ga0062591_10206165023300004643SoilMITTASEAVASPTRRKRVTLRKTVVTCAVMAAVLLLAIILMSLLGSEPLPVRASLCALASFGTSTCGLTQDQFDILFQIRLPRILLAAAVGG
Ga0062594_10217436023300005093SoilMTVALSSSAGVMATRRNRVTLRKTLVSCAGLALTLLLAVILLSLVGSESLPARSSLCALLSFGTSPCGLSQDQFDILFQI
Ga0065715_1036730613300005293Miscanthus RhizosphereMISTASNVVVVSANRVTLRKTLVSCAVLAVALLFAIVVMSLIGSERLPARASLCAIASLGTSACGLSRDQFDILFQIRLPRILLAAAVGG
Ga0065715_1038490713300005293Miscanthus RhizosphereMITTASEAVAAPARHNRVTLRKTLISCAALAAALLLAIVLMSLLGSESLPVRASLCALASFGTSTCGLTQDQFDILF
Ga0065705_1004703613300005294Switchgrass RhizosphereMITTASEAVASXARRTRVTLRKTVVTCAVLVAALLLAIILMSLLGSEQLPVRASLCALASFGTSTCGLTQDQFDILFQIRLPRILLAAAVGGSLA
Ga0070680_10067191823300005336Corn RhizosphereMMNRVTLRKTIISCALLAAALLLAIVFMSLIGSEPLPVRASLCAIASLGS
Ga0070689_10094674123300005340Switchgrass RhizosphereMNRVTLRKTVISCALLAAGLLLAVVFTSLVGSERLPVSGSLCALASFGNSSCGLTQDQFDILFQI
Ga0070692_1023486613300005345Corn, Switchgrass And Miscanthus RhizosphereMNRVTLRKTIIACAAMAAALLIVIVLMSLLGSEPLPVRASLCALASFGTSACGLTQDQ
Ga0070692_1025265413300005345Corn, Switchgrass And Miscanthus RhizosphereMSITASGFVNSTSRQNRVTLRKTLISCLALFAALLLSIVLMSLIGSEALPVRDSLCALATFGDSSCGLSQDQFDIL
Ga0070692_1083886013300005345Corn, Switchgrass And Miscanthus RhizosphereMSSTASGFVNSSARQNRVTLRKMVVSCLVLTAALLFSIVLMSLIGSEPLPARASLCALASFGSSACGLTADQF
Ga0070692_1103863523300005345Corn, Switchgrass And Miscanthus RhizosphereMASDSTDMITCAPARPNRVTLRKTIISCALLAAGLLLAVVFTSLVGSERLPVRASLCALASFGNRSCGLTSEQFDILFQIRLPRIVLAAAVGGSLAT
Ga0070703_1014970223300005406Corn, Switchgrass And Miscanthus RhizosphereMTVALSTHAGGIRRSRVTLRKTVVSCAALALTLLLAVLLLSLIGSEPLPLKASLCSLLSFGTSPCGLTQDQFDILFQIRL
Ga0070701_1059317923300005438Corn, Switchgrass And Miscanthus RhizosphereMITSSSSEMFVASPARQNRVTLRKTVISCALLAGALLLAIVLMSLIGSEQLPVRPSLCALASFGTTPCGLTRDQFDILFQI
Ga0070705_10121352913300005440Corn, Switchgrass And Miscanthus RhizosphereMITSSSSEMFVSSPARQNRVTLRKTVISCALLAGALLLAIVLMSLIGSEQLPVRPSLCALASLGTTPCGLTRD
Ga0070700_10064031623300005441Corn, Switchgrass And Miscanthus RhizosphereMNRVTLRKTIFACVVLAATLLLAIVLMSLLGSEALPVRASLCALASFGTSTCGLTQD
Ga0070694_10003128153300005444Corn, Switchgrass And Miscanthus RhizosphereMSAPARPNRVTLRKTLISCALLATGLLLAVVFTSLVGSERLPVRASLCALA
Ga0070694_10107112523300005444Corn, Switchgrass And Miscanthus RhizosphereMSITASGFVNSTSRQNRVTLRKTLISCLALFAALLLSIVLMSLIGSEALPVRDSLCALATFGASSCGLSQDQFDILFQIRL
Ga0070662_10150498613300005457Corn RhizosphereMTSTASEIVSTPPRRNRVTLRKTVIACLTLTIALLLAIVLMSLLGSEQLPARASLCALASLGTSACGLTRDQFDILFQIRLPRILLAAAVGGSL
Ga0070672_10197437223300005543Miscanthus RhizosphereMNRVTLRKTIVTCAAMAAALLIAIVLMSLLGSESLPVRASLCALASFGTNTCG
Ga0070686_10112758323300005544Switchgrass RhizosphereMNRVTLRKTIVACAVLAAALLLAIVLMSLLGSEPLPVRASLCALASFGTSTCGLTQDQFAIL
Ga0070695_10108076523300005545Corn, Switchgrass And Miscanthus RhizosphereMTSTASEIVSTPRGRNRVTLRKTVIACLTLTIALLLAIVLMSLLGSEQLPARASLCALASFGTSACGLTRDQFDILFQ
Ga0070696_10054858723300005546Corn, Switchgrass And Miscanthus RhizosphereMSITASGFVNSTSRQNRVTLRKTLISCLALFAALLLSIVLMSLIGSEALPVRDSLCALATFGASSC
Ga0070693_10115836513300005547Corn, Switchgrass And Miscanthus RhizosphereMNRVTLRKTLISCALLGAVLLLAIVSMSLLGSERLPARASLCALASLGSSACGLTQDQFDILF
Ga0070693_10132936323300005547Corn, Switchgrass And Miscanthus RhizosphereMIGTASDIVVSAVRQNRVTLRKTVVTCTLLAATLTLGIVLASLIGSEPLPSGASLCALASFGTSMCGLTRDQFDILFQLRLPRILLAAAVGGSL
Ga0070704_10220030813300005549Corn, Switchgrass And Miscanthus RhizosphereMNRVTLRKTIVACAVLAAALLLAIILMSLLGSEPLPVRASLCALASFGTSTCGLTQDQFAILFEIRL
Ga0070664_10087074323300005564Corn RhizosphereMNRVTLRKTLISCALLGGALLLAIVSMSLLGSEKLPARASLCALASLGTRACGLTSDQFDILFQIRLP
Ga0068854_10179925713300005578Corn RhizosphereMITNASETITSPARPNRVTLRKTVVACAVLAGALLLAIVMMSLLGSEALPARASLCALASFGTSTCGLSQDQFDILFQIRLPRILLAAAVGGS
Ga0070702_10142673523300005615Corn, Switchgrass And Miscanthus RhizosphereMNRVTLRKTVISCALLAAGLLLAVVFTSLVGSERLPVSGSLCALASFGNSSCGLTQ
Ga0068852_10033183513300005616Corn RhizosphereMNRVTLRKTLISCALLGAVLLLAIVSMSLLGSERLPARASLCALASLGSSACGLTQDQFDILFQIRLPRILLAA
Ga0068859_10003473313300005617Switchgrass RhizosphereMSSTASGFVNSSARQNRVTLRKTVVSCLVLAGALLFSIVLMSLIGSEPLPARASLCALASFGSSACGLTPDQFDILFQIRLPRILLAAAV
Ga0068859_10026905213300005617Switchgrass RhizosphereMSITASGFVNSTSRQNRVTLRKTLISCLALFAALLLSIVLMSLIGSEALPVRDSLCALATFGASSCGLSQDQFDILFQIRLPRILL
Ga0068859_10060516723300005617Switchgrass RhizosphereMPAPLRQNRVTLRKTLISCAVLAFALLLAVVFMSLLGSEPLPVQASLCALASFGRNSCGLTSDQFDILFQI
Ga0068864_10064095323300005618Switchgrass RhizosphereMNRVTLRKTVISCVLLAATLLLAIVLMSLVGSEPLPVRASLCALASFGNTSCGLTPDQ
Ga0068864_10193974213300005618Switchgrass RhizosphereMNRVTLRKTVISCALLAAALLFAIVFMSLLGSEPLPVRSSLCALASFGSTSCGLTSDQFDILFQIRLPRI
Ga0068861_10220400423300005719Switchgrass RhizosphereMNRVTFRKTIIACAVLAAALLLAIVLMSLLGSEALPVRASLCALASFGTSPCGLSQD
Ga0068858_10120429213300005842Switchgrass RhizosphereMNRVTLRKTLISCALLGGALLLAIVSMSLLGSEKLPARASLCALASFGTSACGLTPDQFDILFQIRLPRILLAAAVGG
Ga0068862_10071916313300005844Switchgrass RhizosphereMITSSSSEMFVASPARQNRVTLRKTVISCALLAGVLLLAIVLMSLIGSEQLPVRPSLCALASLGTTPCGLTRDQFDILFQIRLPRILLAAAV
Ga0068862_10273787523300005844Switchgrass RhizosphereMTDTSQTVMVANAQQHRVTLKKTLSACLLLAVALLVAVLVASLLGSERLPFSSSLCSLVSLGQNQCGLSADQFDILFQIRLPRVLLAAAVG
Ga0075432_1029629023300006058Populus RhizosphereMNRVTLRKTLTSCALLGAVLLLVIISMSLLGSERLPARASLCALASLGTSACGLTQD
Ga0082029_126782923300006169Termite NestMSSTASNIVTSPARQNRVTLRKTVVSCLALTITLLLSIVFMSLIGSEQLPARASLCALASFGTASCGLTRDQFGILFQIRL
Ga0075428_10168328413300006844Populus RhizosphereMTLALSSSAGGIAMRRNRVTLRKTLVSCAALALTLLLAVILLSLVGSESLPARSSLCALLSFGTSPCGLSQDQFDILFQIRLPRILLAA
Ga0075421_10122516513300006845Populus RhizosphereMTVALLNPTESDPANVIAARQSRVTLRKTLISCAALAGALLLALLVLSLIGSERLPARASLCALLSFGTNSCGLTQDQFDILFQIRVPRLLLA
Ga0075421_10144553923300006845Populus RhizosphereMTSTASGFVNTTARQNRVTLRKTVISCLGLIGALLLAIVLMSLIGSEPLPARASLCALASFGTSACGLSQDQFDILFQIRLPRILLA
Ga0075431_10173765113300006847Populus RhizosphereMSSTASGFVNTTARQNRVTLRKTVISCVGLTGALVLAIVLMSLIGSEPLPARASLCALASFGTSACGLSRDQFDILFQIRLPRILLAAAVGGSLA
Ga0075420_10109757113300006853Populus RhizosphereMNRVTLRKTVISCALLAAALLLAVVLMSLAGSESLPVRSSLCALASFGSTSCGLTPDQFDILFQIRVP
Ga0068865_10026572923300006881Miscanthus RhizosphereMITSSSSEMFVASPARQNRVTLRKTVISCALLAGALLLAIVLMSLIGSEQLPTRASLCALASFGTTPCGLTRDQFDILFQ
Ga0079215_10000608103300006894Agricultural SoilMTVALSNPIALRHNRVTLRKTLVSCALLALALLLAVIVLSLVGSEQLPAGSSLCALLSLGTTPCGLSQDQFDILFQIRLPRILLAA
Ga0079216_1031814913300006918Agricultural SoilMTLALPDHAGAIAMRRDRVTLRKTLVSCALLALALLLAVVLLSLIGSEPLPAKASLCALLSFGTSPCGLSQDQFDILFDIRLPRI
Ga0079219_1079123613300006954Agricultural SoilMISNASETIVSPARHNRVTLRKTVVACAVLGATLLIVIVLMSLLGSEPLPLRASLCALASFGTSTCGLSQDQFDILFQI
Ga0105245_1091785713300009098Miscanthus RhizosphereMSSTASGFVNSSARQNRVTLRKTVVSCLVLACALLFSIVLMSLIGSEPLPARASLCALASFGTSTCGLSQDQFDILFQIRLP
Ga0105245_1277482723300009098Miscanthus RhizosphereMITSASSAVASPAQRNRVTLRKTLISCAVLAAALLLAIVLMSLLGSEQLPVRASLCALASFGTSTCGLSQDQFDILF
Ga0114129_1149882023300009147Populus RhizosphereMTTASSSDTFVASNARQNRVTLRKTVISCALLASALLLAIVLMSLIGSEQLPARASLCALASLGTTPCGL
Ga0114129_1260709923300009147Populus RhizosphereMISTASNVVVVSANRVTLRKTLVSCAVLAVALLFAIVVMSLIGSERLPARASLCAIASLGTSACGLSRDQFDILFQIRLPRILLAAAVGGSLA
Ga0114129_1328470413300009147Populus RhizosphereMNRVTLRKTVISCALLGAALLLAIVLMSLIGSERLPARESLCALASLGSSACGLTADQF
Ga0105243_1096182923300009148Miscanthus RhizosphereMITSSSSEMFVASPARQNRVTLRKTVISCALLAGALLLAIVLMSLIGSEQLPTRASLCALASLGTTPCGLTRDQFDILFQ
Ga0105243_1274593413300009148Miscanthus RhizosphereMNRVTLRKTIVACVVLAAALLLAIVLMSLLGSESLPVRESLCALASFGTSP
Ga0111538_1024844813300009156Populus RhizosphereMINSATGIAARTARANRLTLRKTLISCVVLAGALLLTIILTALIGSESLPARASLCALASFGINACGLTQDQFDILFQL
Ga0105241_1153480913300009174Corn RhizosphereMITNASETIASPARPNRVTLRKTLVSCAALGAALLLAIVVMSLLGSEPLPVRASLCALASFGTSTCGLSQDQFDILLQIRLPRILLAAAVGGSLA
Ga0126307_1019010913300009789Serpentine SoilMITNASEVVASPARPNRVTLRKTVISCAVLAAALLSAIVLMSLLGSEQLPVRASLCALTSFGTSMCGLTQDQFDIL
Ga0126313_1180679423300009840Serpentine SoilMTTAPEIVVTQQSRVTLRKTLVSCAFLAGALLLAIVLMSLIGSESLPTRASLCALASLGTTPCGLTRDQFDILFQL
Ga0126305_1117959023300010036Serpentine SoilMTTTASEIVASPARQNRVTLRKTVISCAVLAALLLITVVLMSLLGSEQLPVRASLCALASFGTTTCGLTQDQFDILFQIRLPRILLAAAVG
Ga0126315_1014222113300010038Serpentine SoilMTTASDSSEMFVAATARQSRVTLRKTLISCALLAGALLLAIVLLSLIGSEQLPARASLCALASLGTRPCGLTRDQFDILFQIRLPRIL
Ga0126308_1135015913300010040Serpentine SoilMSSTASDIVTSPARPNRVTLQKTLVSCTLLGLMLLLAIVVMSLIGSEQLPARASLCALASFGTTACGLSRDQFDI
Ga0126314_1001951713300010042Serpentine SoilMNRVTLRKTIVACAVLAAALLLAIILMSLLGSEQLPVRASLCALASFGTSMCGLTQDQFDILFQIRLP
Ga0105239_1115536513300010375Corn RhizosphereMISTASNVVVVSANRVTLRKTLVSCAVLAVALLFAIVVMSLIGSERLPARASLCAIASLGTSACGLSRDQFDI
Ga0134124_1085399213300010397Terrestrial SoilMITNASETIASPARHNRVTLRKTVVACAVLAVVLLLAIILMSLLGSEALPVRASLCALASFGTSACGLSQDQFDILFQIRLPRI
Ga0134127_1009277553300010399Terrestrial SoilMITSSSSEMFVASPARQNRVTLRKTVISCALLAGALLLAIVLMSLIGSEQLPARASLCALASLGKTPCGLTRDQFDILFQ
Ga0134127_1033700133300010399Terrestrial SoilMITTASEVVASPARQNRVTLRKTVITCAVLVAALLLAIVLMSLLGSEQLPVRGSLCALASFGTTTCGLTQDQFDILFQ
Ga0134127_1373815523300010399Terrestrial SoilMITNASETITSPARPNRVTLRKTVVACAALVATLLLAIVLMSLLGSEQLPVRASLCALASFGTSPCGLSQDQFDILFQIRLPRILLAAAVG
Ga0134122_1205431423300010400Terrestrial SoilMNRVTLRKTLISCALLGGALLLAIVSMSLLGSERLPARASLCALASFGTSACGLTPDQFDILFQIRLPRILL
Ga0134122_1322802613300010400Terrestrial SoilMTMASDSSEMFVATAARQNRVTLRKTLISCALLAGALLLAIVLMSLLGSEQLPAHASLCALASLGTTPCGLTRDQFDILFQIRVPRILLAAAVGGSL
Ga0120191_1003621113300012022TerrestrialMSITASGFVDSTSRQNRVTLRKTLISCLALIAALLLSIVVMSLIGSESLPVRESLCALASFGTSSCGLSQDQFDILFQIRLPRILLAAAVGGSLA
Ga0137419_1016180533300012925Vadose Zone SoilMTISESSHSRASTVYMASRNRTTLRKTFIACTVLSGALLLVVVLTSLIGSERLPVGASLCALFSFGRSQCTLTNDQFDILFQI
Ga0164299_1104758823300012958SoilMNRVTLRKTVISCALLAAALLFAIVFMSLLGSEPLPVRSSLCALASFGSTSCGLTS
Ga0164299_1171080913300012958SoilMPVAATSNFPVQQNRATLRKTLVACCALLSALLLAILVTSLVGSERLPSGGALCALVSLGTNQCGLTSDQFDILFQIRLPRIL
Ga0157373_1137519613300013100Corn RhizosphereMSSTASNIVTAPARQNRVTLRKTVVSCLALAIALLLSIVLMSLIGSEQLPARASLCALASFGTASCGLTRDQFDILFQIR
Ga0163163_1034837113300014325Switchgrass RhizosphereMNRVTLRKTLISCALLGGALLLAIVSMSLLGSERLPARDSLCALASLGTSACGLTPDQFDILFQIRLPRILLAAAVCGS
Ga0163163_1082848023300014325Switchgrass RhizosphereMNRVTLRKTIIACAVLAAALLLAIVLMSLLGSEPLPVRASLCALASFGTSPCGLTQDQF
Ga0157379_1070146223300014968Switchgrass RhizosphereMIGTASGIVVSTARQNRVTLRKTVVSCAVLAAALTLAIVLMSLIGSEPLPSGASLCALASLGTSTCGLTRDQFDILFQLRLPRILLAAAVGGSLAT
Ga0132257_10339557923300015373Arabidopsis RhizosphereMITTASEAVAAPARHNRVTLRKTLIACAVLAAVLLLAIMLMSLLGSEALPVRASLCALASFGTSTCGLTQDQFDIL
Ga0184628_1004843113300018083Groundwater SedimentMTSMSETTVVIANNPTSQFRTTFRKTAIACSALAVTLLLAVVATSLLGSERLPTSASLCALLSLGTKQCGLTGDQFDILFQIRLPRILLAAAV
Ga0190265_1385151813300018422SoilMTVALPDAVGVMAMRRSRVTLRKMLVSCALLALALLLAVILLSLIGSEPLPARSSLCALLSFGTSPCGLSQDQFDILFQIRLPRILLAAAVGGS
Ga0207643_1009836713300025908Miscanthus RhizosphereMITTASEAVASPARRKRVTLRKTLVSCAALGAALLLAIVVMSLLGSEPLPMRASLCALASFGTSTCGLSQDQFDILFQIRLP
Ga0207643_1010749913300025908Miscanthus RhizosphereMNRVTLRKTLISCALLGGTLLLAIVAMSLLGSEKLPARESLCALASLGTSACGLTPDQFDILFQIRLPRILLAAAVGGS
Ga0207643_1100056223300025908Miscanthus RhizosphereMNRVTLRKTLISCALLGGALLLAIISMSLLGSERLPARNSLCALASLG
Ga0207695_1148561813300025913Corn RhizosphereMNRVTLRKTIVACAVLAAALLLAIILMSLLGSEPLPVRASLCALASFGTSTCGLTQDQFAILFEIRLP
Ga0207646_1051512013300025922Corn, Switchgrass And Miscanthus RhizosphereMIGNASEMLASPARRNRVTLRRTLVSCALLAGSLLLAIVLLSLIGSEPLPARASLCALASLGTSTC
Ga0207650_1129079923300025925Switchgrass RhizosphereMNRVTLRKTLVACAVLAATLLLAIVVMSLLGSEPLPVRASLCALASFGTRTCGLTQDQFDILFQIRL
Ga0207709_1000648913300025935Miscanthus RhizosphereMNRVTLRKTLISCALLGGALILAIISMSLLGSERLPARESLCALASLGTSACGLTSDQFDILFQIRLPRIL
Ga0207709_1169686023300025935Miscanthus RhizosphereMITTASEAVAAPARHNRVTLRKTLIACAALAAALLLAIVLMSLLGSESLPVRASLCALASFGTSTC
Ga0207711_1118984013300025941Switchgrass RhizosphereMNRVTLRKTIVACVVLAAALLLAIVLMSLLGSESLPVRASLCALASFGTSPCGLTQDQFDILFQIRL
Ga0207711_1207807823300025941Switchgrass RhizosphereMNRVTLRKTLISCALLGGALLIAIVSMSLLGSERLPARDSLCALASLGTSACGLTPDQFDILFQIRLPRILLAAAVG
Ga0207689_1044447213300025942Miscanthus RhizosphereMITSSSSEMFVASPARQNRVTLRKTVISCALLAGALLLAIVLMSLIGSEQLPVRPSLCALASFGTTPCGLTRDQFDIL
Ga0207689_1052389013300025942Miscanthus RhizosphereMITTASEAVASPTRRKRVTLRKTVVTCAVMAAVLLLAIILMSLLGSEPLPVRASLCALASFGTSTCGLTQDQFDILF
Ga0207651_1196831623300025960Switchgrass RhizosphereMITNASETIASPARHNRVTLRKTVVACAVLAVVLLLAIILMSLLGSEALPVRASLCALASFGTSTCGLSQDQFDILFQIRLPRILLAAAVGGS
Ga0210102_110023113300025971Natural And Restored WetlandsMTPAMAVTSESRNRVTLRKTVVSCVVLLSVLLLSIVLMSLLGSERLPASSSLCALATFGANACGLAQDQYDILFQIRVPRILLAAA
Ga0208285_101959313300026005Rice Paddy SoilMITNASQAIASPARSNRVTLRKTVVACAVLVAALLIAIVSMSLLGSEALPVRASLCALASFGTRT
Ga0208778_100708913300026025Rice Paddy SoilMITNASPAIASPARSNRVTLRKTVVACAVLTAALLLAIVLMSLLGSEPLPMRASLCALASFGTSSCGLSQDQFDILFQIRLPRILLAAAVGGSL
Ga0207676_1097879613300026095Switchgrass RhizosphereMNRVTFRKTIVACAVLAAALLLAIVLMSLLGSEPLPVRASLCALASFGTSTCGLTQDQ
Ga0207676_1101455523300026095Switchgrass RhizosphereMSITASGFVNSTSRQNRVTLRKTLISCLALFAALLLSIVLMSLIGSEALPVRDSLCALATFGASSCGLSQDQFDILFQIRLPRILLAAAV
Ga0207674_1181411423300026116Corn RhizosphereMTVALSTHAGGIRRSRVTLRKTVVSCAALALTLLLAVLLLSLIGSEPLPLKASLCSLLSFGTSPCGLTQDQFDILFQIRLP
Ga0207675_10107079223300026118Switchgrass RhizosphereMNRVTLRKTIVACAVLAAALLLAIILMSLLGSEPLPVRASLCALASFGTSTCGLTQDQFAILFEIRLPRIL
Ga0207675_10210981123300026118Switchgrass RhizosphereMNRVTFRKTIIACAVLAAALLLAIVLMSLLGSEALPVRASLCALASFGTSPCGLSQDQFDILF
Ga0207698_1044921113300026142Corn RhizosphereMNRVTLRKTLISCALLGAVLLLAIVSMSLLGSERLPARASLCALASLGSSACGLTQDQFDILFQIRLPRILLAAA
Ga0209215_103464213300027266Forest SoilMNRVTLRKTLISCALLGGTVLLAIISMSLLGSEKLPARDSLCALASLGTSACGLTPDQFDILFQIRLPRILLAAAVGGSL
Ga0209177_1048933123300027775Agricultural SoilMISNASETIVSPARHNRVTLRKTVVACAVLGATLLIVIVLMSLLGSEPLPLRASLCALASFGTSTCGLSQDQFDILFQIRLPRILL
Ga0268265_1171618823300028380Switchgrass RhizosphereMNRVTLRKTLISCALLGGALLLAIVSMSLLGSERLPVRDSLCALASLGTSACGLTPNQFDILFQIRLPRILLAAAVGGSL
Ga0268264_1018758433300028381Switchgrass RhizosphereMIGTASGIVVSTARQNRVTLRKTVVSCAVLAAALTLAIVLMSLIGSEPLPSGASLCALASLGTSTCGLTRDQFDILFQLRLPRILLAAAV
Ga0307405_1105609323300031731RhizosphereMITSSSSDTFVASAVRQNRVTLRKTVISCALLAGALLLAIVLMSLIGSEQLPARASLCALASLGTTPCGLTRDQFD
Ga0307413_1210704123300031824RhizosphereMITSSSSDTFVASAVRQNRVTLRKTVISCALLAGSLLLAIVLMSLIGSEQLPARASLCALASLGTTPCSLTRDQF
Ga0310897_1045808013300032003SoilMSVALSTHAGAIRRSRVTLRKTVVSCAALALTLLLAVLLLSLIGSEPLPLKASLCSLLSFGTSPCGLTQDQFDILFQIRLPRILLA
Ga0307415_10125854913300032126RhizosphereMIITASDIVASPAGQSRVTLRKTLVSCTLLGAALLLAIVLMSLIGSEQLPAGASLCALASFGTTTCGLSRDQFDILFQIRL
Ga0310810_1138995213300033412SoilMSSATSNSVATSANRVTLRKTLVSCAVLAIAVLLAIVLTSLVGSERLPARASLCAIASLGTRACGLGRDQFDILFQIRLPRILLAAAVGGSL

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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