NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F069409

Metagenome Family F069409

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F069409
Family Type Metagenome
Number of Sequences 124
Average Sequence Length 69 residues
Representative Sequence LGTTLRAIGRGFGNGTFGLAQASTDIADSPTASAKLVANAVDRNAAARAERVTAFLCGGESFTR
Number of Associated Samples 116
Number of Associated Scaffolds 124

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 10.11 %
% of genes near scaffold ends (potentially truncated) 60.48 %
% of genes from short scaffolds (< 2000 bps) 66.94 %
Associated GOLD sequencing projects 110
AlphaFold2 3D model prediction Yes
3D model pTM-score0.33

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (70.968 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(12.903 % of family members)
Environment Ontology (ENVO) Unclassified
(33.871 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(41.935 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 30.43%    β-sheet: 0.00%    Coil/Unstructured: 69.57%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.33
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 124 Family Scaffolds
PF00701DHDPS 78.23
PF01741MscL 5.65
PF01668SmpB 4.03
PF00593TonB_dep_Rec 0.81
PF01464SLT 0.81
PF11412DsbC 0.81

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 124 Family Scaffolds
COG03294-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyaseCell wall/membrane/envelope biogenesis [M] 156.45
COG1970Large-conductance mechanosensitive channelCell wall/membrane/envelope biogenesis [M] 5.65
COG0691tmRNA-binding proteinPosttranslational modification, protein turnover, chaperones [O] 4.03

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms70.97 %
UnclassifiedrootN/A29.03 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000732|JGI12023J11887_1002743All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Pleomorphomonadaceae1001Open in IMG/M
3300000907|JGI11871J12876_101377All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Pleomorphomonadaceae825Open in IMG/M
3300001164|JGI11823J13286_1001045All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1748Open in IMG/M
3300001661|JGI12053J15887_10374956All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria686Open in IMG/M
3300002239|JGI24034J26672_10119862All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium508Open in IMG/M
3300002245|JGIcombinedJ26739_101011827All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales716Open in IMG/M
3300002568|C688J35102_119241584All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales660Open in IMG/M
3300003369|JGI24140J50213_10084706All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1070Open in IMG/M
3300004153|Ga0063455_100587976Not Available720Open in IMG/M
3300004643|Ga0062591_101274234All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria721Open in IMG/M
3300005338|Ga0068868_100620941All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales959Open in IMG/M
3300005341|Ga0070691_10074186All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1655Open in IMG/M
3300005356|Ga0070674_100767966All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria830Open in IMG/M
3300005366|Ga0070659_100759232All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria842Open in IMG/M
3300005367|Ga0070667_102105103All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium531Open in IMG/M
3300005435|Ga0070714_101468509All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria666Open in IMG/M
3300005548|Ga0070665_100475377All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1260Open in IMG/M
3300005561|Ga0066699_10701389All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria721Open in IMG/M
3300005566|Ga0066693_10049328All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Pleomorphomonadaceae1401Open in IMG/M
3300005614|Ga0068856_100233688All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1854Open in IMG/M
3300005841|Ga0068863_100279011All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1619Open in IMG/M
3300006048|Ga0075363_100036355All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHA00022583Open in IMG/M
3300006052|Ga0075029_100033321All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium2935Open in IMG/M
3300006102|Ga0075015_100384888All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria789Open in IMG/M
3300006163|Ga0070715_10069771All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1567Open in IMG/M
3300006353|Ga0075370_10379684All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria846Open in IMG/M
3300006847|Ga0075431_102057339All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria526Open in IMG/M
3300006881|Ga0068865_101374467All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria630Open in IMG/M
3300009092|Ga0105250_10308169All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria686Open in IMG/M
3300009101|Ga0105247_10248005All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1216Open in IMG/M
3300009551|Ga0105238_12274582All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium577Open in IMG/M
3300009553|Ga0105249_13206685All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium526Open in IMG/M
3300010045|Ga0126311_11154682All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium639Open in IMG/M
3300010325|Ga0134064_10152225All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria801Open in IMG/M
3300010399|Ga0134127_11938530All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium666Open in IMG/M
3300011119|Ga0105246_11961420All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium564Open in IMG/M
3300011996|Ga0120156_1067934All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium646Open in IMG/M
3300012201|Ga0137365_11100751All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales572Open in IMG/M
3300012203|Ga0137399_10764734All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria813Open in IMG/M
3300012203|Ga0137399_11703186All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria519Open in IMG/M
3300012469|Ga0150984_112467350All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria827Open in IMG/M
3300012683|Ga0137398_10009556All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium4833Open in IMG/M
3300012683|Ga0137398_10415198All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria917Open in IMG/M
3300012901|Ga0157288_10290923All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium567Open in IMG/M
3300012923|Ga0137359_11126660All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Pleomorphomonadaceae671Open in IMG/M
3300012960|Ga0164301_10498044All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Pleomorphomonadaceae878Open in IMG/M
3300012961|Ga0164302_11350209All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria579Open in IMG/M
3300012984|Ga0164309_10402700All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1021Open in IMG/M
3300013296|Ga0157374_11250853All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria764Open in IMG/M
3300013297|Ga0157378_10240555All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei1729Open in IMG/M
3300013297|Ga0157378_10921828All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria905Open in IMG/M
3300014326|Ga0157380_10910424All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria906Open in IMG/M
3300014326|Ga0157380_11762981All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria678Open in IMG/M
3300014498|Ga0182019_10310715All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1053Open in IMG/M
3300015264|Ga0137403_10181369All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae2051Open in IMG/M
3300015356|Ga0134073_10089931All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Pleomorphomonadaceae891Open in IMG/M
3300015373|Ga0132257_101200423All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria960Open in IMG/M
3300018043|Ga0187887_10058467All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium2358Open in IMG/M
3300018051|Ga0184620_10012385All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1967Open in IMG/M
3300018433|Ga0066667_10188908All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1501Open in IMG/M
3300019877|Ga0193722_1030693All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1390Open in IMG/M
3300021479|Ga0210410_11203673All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria649Open in IMG/M
3300025321|Ga0207656_10381087All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales707Open in IMG/M
3300025901|Ga0207688_10575248All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria709Open in IMG/M
3300025929|Ga0207664_10635133All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria959Open in IMG/M
3300025931|Ga0207644_10292110All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1311Open in IMG/M
3300025935|Ga0207709_10382583All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1071Open in IMG/M
3300025937|Ga0207669_10671189All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria849Open in IMG/M
3300025981|Ga0207640_10917687All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria766Open in IMG/M
3300026078|Ga0207702_11950678All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium578Open in IMG/M
3300026118|Ga0207675_102360657All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium545Open in IMG/M
3300027164|Ga0208994_1075978All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria504Open in IMG/M
3300027334|Ga0209529_1038646All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria815Open in IMG/M
3300027439|Ga0209332_1024438All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Pleomorphomonadaceae1152Open in IMG/M
3300027645|Ga0209117_1053125All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1193Open in IMG/M
3300027676|Ga0209333_1125149All Organisms → cellular organisms → Bacteria → Proteobacteria695Open in IMG/M
3300027909|Ga0209382_11253746All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria754Open in IMG/M
3300027910|Ga0209583_10189121All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria871Open in IMG/M
3300028379|Ga0268266_10385153All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii1323Open in IMG/M
3300028716|Ga0307311_10043947All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1176Open in IMG/M
3300028793|Ga0307299_10283037All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria623Open in IMG/M
3300031028|Ga0302180_10106128All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1603Open in IMG/M
3300031128|Ga0170823_17433365All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales698Open in IMG/M
3300031524|Ga0302320_11143687All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria805Open in IMG/M
3300031730|Ga0307516_10716991All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria658Open in IMG/M
3300031753|Ga0307477_10487173All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Pleomorphomonadaceae839Open in IMG/M
3300031902|Ga0302322_101958562All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria719Open in IMG/M
3300034268|Ga0372943_0271579All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1070Open in IMG/M
3300034384|Ga0372946_0028506All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium2471Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil12.90%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil9.68%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil8.87%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil5.65%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds4.03%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil3.23%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil3.23%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere3.23%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere3.23%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere3.23%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil2.42%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere2.42%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere2.42%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil1.61%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil1.61%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.61%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil1.61%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa1.61%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil1.61%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.61%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere1.61%
Corn, Switchgrass And Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere1.61%
Populus EndosphereHost-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere1.61%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.61%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.61%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere1.61%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland0.81%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog0.81%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.81%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.81%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil0.81%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.81%
PermafrostEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost0.81%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.81%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.81%
FenEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Fen0.81%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen0.81%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog0.81%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.81%
EctomycorrhizaHost-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza0.81%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.81%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.81%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.81%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere0.81%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000732Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2EnvironmentalOpen in IMG/M
3300000907Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M1EnvironmentalOpen in IMG/M
3300001164Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1EnvironmentalOpen in IMG/M
3300001661Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)EnvironmentalOpen in IMG/M
3300002239Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S2Host-AssociatedOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300002568Grasslands soil microbial communities from Hopland, California, USA - 2EnvironmentalOpen in IMG/M
3300003369Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 002-22AEnvironmentalOpen in IMG/M
3300004153Grasslands soil microbial communities from Hopland, California, USA (version 2)EnvironmentalOpen in IMG/M
3300004643Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3EnvironmentalOpen in IMG/M
3300005338Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2Host-AssociatedOpen in IMG/M
3300005341Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaGEnvironmentalOpen in IMG/M
3300005356Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaGHost-AssociatedOpen in IMG/M
3300005366Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaGHost-AssociatedOpen in IMG/M
3300005367Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaGHost-AssociatedOpen in IMG/M
3300005435Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaGEnvironmentalOpen in IMG/M
3300005548Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaGHost-AssociatedOpen in IMG/M
3300005561Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148EnvironmentalOpen in IMG/M
3300005566Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142EnvironmentalOpen in IMG/M
3300005586Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140EnvironmentalOpen in IMG/M
3300005614Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2Host-AssociatedOpen in IMG/M
3300005841Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2Host-AssociatedOpen in IMG/M
3300006048Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3Host-AssociatedOpen in IMG/M
3300006052Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013EnvironmentalOpen in IMG/M
3300006102Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013EnvironmentalOpen in IMG/M
3300006162Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012EnvironmentalOpen in IMG/M
3300006163Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaGEnvironmentalOpen in IMG/M
3300006353Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5Host-AssociatedOpen in IMG/M
3300006847Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5Host-AssociatedOpen in IMG/M
3300006881Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2Host-AssociatedOpen in IMG/M
3300009092Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaGHost-AssociatedOpen in IMG/M
3300009101Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaGHost-AssociatedOpen in IMG/M
3300009551Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaGHost-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300010045Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61EnvironmentalOpen in IMG/M
3300010303Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015EnvironmentalOpen in IMG/M
3300010320Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015EnvironmentalOpen in IMG/M
3300010325Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaGEnvironmentalOpen in IMG/M
3300010335Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015EnvironmentalOpen in IMG/M
3300010336Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300011119Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaGHost-AssociatedOpen in IMG/M
3300011996Permafrost microbial communities from Nunavut, Canada - A39_65cm_12MEnvironmentalOpen in IMG/M
3300012201Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012469Combined assembly of Soil carbon rhizosphereHost-AssociatedOpen in IMG/M
3300012683Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaGEnvironmentalOpen in IMG/M
3300012896Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2EnvironmentalOpen in IMG/M
3300012901Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S119-311C-1EnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012957Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MGEnvironmentalOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300012961Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MGEnvironmentalOpen in IMG/M
3300012976Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaGEnvironmentalOpen in IMG/M
3300012984Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MGEnvironmentalOpen in IMG/M
3300012985Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MGEnvironmentalOpen in IMG/M
3300012986Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MGEnvironmentalOpen in IMG/M
3300013296Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaGHost-AssociatedOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300014167Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaGEnvironmentalOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300014498Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaGEnvironmentalOpen in IMG/M
3300014968Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaGHost-AssociatedOpen in IMG/M
3300014969Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaGHost-AssociatedOpen in IMG/M
3300015264Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015356Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300018043Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10EnvironmentalOpen in IMG/M
3300018051Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1EnvironmentalOpen in IMG/M
3300018431Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104EnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300019877Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m1EnvironmentalOpen in IMG/M
3300020002Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1EnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300025321Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025544Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-2 deep-072012 (SPAdes)EnvironmentalOpen in IMG/M
3300025901Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)Host-AssociatedOpen in IMG/M
3300025929Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025931Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025935Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025937Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025981Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026078Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026118Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026320Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026480Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-BEnvironmentalOpen in IMG/M
3300027164Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O3 (SPAdes)EnvironmentalOpen in IMG/M
3300027334Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300027439Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027645Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027676Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)EnvironmentalOpen in IMG/M
3300027681Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027909Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)Host-AssociatedOpen in IMG/M
3300027910Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)EnvironmentalOpen in IMG/M
3300027911Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)EnvironmentalOpen in IMG/M
3300028047Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300028379Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300028716Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198EnvironmentalOpen in IMG/M
3300028793Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159EnvironmentalOpen in IMG/M
3300028807Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186EnvironmentalOpen in IMG/M
3300029951III_Palsa_N1 coassemblyEnvironmentalOpen in IMG/M
3300031028Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2EnvironmentalOpen in IMG/M
3300031128Oak Summer Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031170Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_SEnvironmentalOpen in IMG/M
3300031524Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3EnvironmentalOpen in IMG/M
3300031730Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EMHost-AssociatedOpen in IMG/M
3300031753Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515EnvironmentalOpen in IMG/M
3300031902Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2EnvironmentalOpen in IMG/M
3300033983Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB23AN SIP fractionEnvironmentalOpen in IMG/M
3300034090Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00NEnvironmentalOpen in IMG/M
3300034268Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2EnvironmentalOpen in IMG/M
3300034384Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_KNG_2.2EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12023J11887_100274313300000732Forest SoilGFGNGTFGMAQASAATADNTTASARLVAKAVDRNAAAREDGGTAFLRGESFNRSIPRSI*
JGI11871J12876_10137713300000907Forest SoilLGAMLRAIGRGFGNGTFGMAQASAATADNTTASARLVAKAVDRNAAAREDGGTAFLRGESFNRSIPRSI*
JGI11823J13286_100104513300001164Forest SoilGAMLRAIGRGFGNGTFGMAQASAATADNTTASARLVAKAVDRNAAAREDGGTAFLRGESFNRSIPRSI*
JGI12053J15887_1037495613300001661Forest SoilVLAGPLGAKARAIGRGLGRGIFFGSAQASATDAENPTASARRIASAVNRNAVARLDGVTAFLGCESANRWGPSSI*
JGI24034J26672_1011986223300002239Corn, Switchgrass And Miscanthus RhizosphereAIVLGTTLRAIGLGFGSGTFGLAQASTGRADSPIASARLVASAVDRNEVARAEGITAFLCGGESFNRCGPRSI*
JGIcombinedJ26739_10101182723300002245Forest SoilVEVLATTLRAIGRGFGNGTFGFAQACPASADNPSASARLVARAVDRNAAARSDGVTAFPDCESSMLKP*
C688J35102_11924158413300002568SoilALRAIGRGFGNGTFGLAQASTERAHRPTASARLVASAVDRIAAARAERVTAFLCGGESFNR*
JGI24140J50213_1008470613300003369Arctic Peat SoilLEEVLGTTFRAIGLGLGNGTFLGMAQASSANADKPTASARHVASAVDRNAAARLDGVTAFFRGESSIAGALALFD*
Ga0063455_10058797623300004153SoilLAAAIGVVLGTACREIGRGFGNGTFGLAHASTDIADSPTASARLVANAVDRNVAARTEDFTVFPCGGESFNR*
Ga0062591_10127423413300004643SoilTFGWAQASTDIANSPTASTRPVASAVDRNAAARAERVTAFLCGGESFTR*
Ga0068868_10062094123300005338Miscanthus RhizosphereAATVAVLAAAIGVVLGTACREIGRGFGNGTFGLAQASTDIAHNPTASARLVASVVDRNVAARTEDFTVFLCGGESFNR*
Ga0070691_1007418613300005341Corn, Switchgrass And Miscanthus RhizosphereIGRGFGNGTFGAAQAATAVNPTASARPVAKAVDRNAAAREDGVTGFLRGESFNRSSPGSI
Ga0070674_10076796613300005356Miscanthus RhizosphereAIGRGFGNGTSAKASETRSDRPTASASDVATAVDRNAVLRAEGVTAFLCGGESLDRSGPRSI*
Ga0070659_10075923223300005366Corn RhizosphereGAWAAAGALVCGVDFGTTLRAIGRGFGIGTFGLAQASRGNAASPTDSTRLVASAVDRKAAARAEGITAFLCGGESFNRSSLRSI*
Ga0070667_10210510323300005367Switchgrass RhizosphereGFGTALRAIGRGFGSGTFGLAQASNGNAASPTASARLVASAVDRKAVARAEGITVFLCGDESFNRSSHRSI*
Ga0070714_10146850913300005435Agricultural SoilAVFAVVLGTTLRAIGRGFGMGTLLAQAVPASAEKPIISVRLVARAVDRNVAARARRFTAFLRGESFDRSSVRSI*
Ga0070665_10047537713300005548Switchgrass RhizosphereLKAVGLAGAGLAGVELTGVVLGTTLRAIGRGFGNGTFGFAQAFAEIADNPTASARLVASAVDRNAAARTERVTAFLCGGESFTR*
Ga0066699_1019524113300005561SoilGRGFGSGTVGVAQASAANTDNPTASARLVANAVDRNGAARNDGVTAFLRGESLNRSSPGCISLNMWTKY*
Ga0066699_1070138913300005561SoilAIGRGFGSGTFGLAQASIDMEESATASARLVASAVDRIAAAQAGWVTAFLCGGESFNRSSLRSI*
Ga0066693_1004932813300005566SoilIGRGFGNGTFGCAHASAPQAEKPTANARVVATAVDRNAAERLDGVTKSLRGESFDRGSPSSISLNTREKH*
Ga0066691_1028642013300005586SoilGSGTVGVAQASAANTDNPTASARLVANAVDRNGAARNDGVTAFLRGESLNRSSPGCISLNMWTKY*
Ga0068856_10023368833300005614Corn RhizosphereLAAAIGVVLGTACREIGRGFGNGTFGLAQASTDIAHNPTASARLVASVVDRNVAARTEDFTVFLCGGESFNR*
Ga0068863_10027901123300005841Switchgrass RhizosphereLAAAIGVVLGTACREIGRGFGNGTFGLAHASTDIADSPTASARLVASVVDRNVAARTEDFTVFLCGGESFNR*
Ga0075363_10003635543300006048Populus EndosphereVVLGTTLRAIGRGFGNGTFGLAQASTEIVDNPIVNVRPVASAVDRNAARRAERVTAFLCGGESFTR*
Ga0075029_10003332153300006052WatershedsLAAVFATFLAAGSVLGTTLRAIGRGFGNGTFLGLAQASPVNADNPTASARQVARVADKAVDRNAAGRRDGVTAFFRGESFNR*
Ga0075015_10038488813300006102WatershedsGTTLRAIGRGFGSGTFGLAQASAASTDNPRDSTRLVARAVDRNAAAREDGVTAFPVGESFNR*
Ga0075030_10039088623300006162WatershedsLGTALRAIGRGFGNGTFALDEACAVHADKPTASTRLIARAVERFAATRMQGFTAFLRGESFRR*
Ga0070715_1006977133300006163Corn, Switchgrass And Miscanthus RhizosphereFGVAQASTDIAERATTSARPVASAVDCNAAARAERFTAFLGGGESFNG*
Ga0075370_1037968413300006353Populus EndosphereLRAIGRGFGRGTFGFAQTSKGNASPTASARLVASAVDRKAVARAEGITVFLCGGESFNRSSLRSI*
Ga0075431_10205733913300006847Populus RhizosphereGRGFGNGTFGWAQTSVAADSAATNIRPVASAVDRNAAARTDRVTAFPGGESFEAHRS*
Ga0068865_10137446723300006881Miscanthus RhizosphereGFGNGTFGLAQASTDIADSPTASAKLVANAVDRNAAARAERVTAFLCGGESFTR*
Ga0105250_1030816923300009092Switchgrass RhizosphereGLGFGSGTFGLAQASTGRADSPIASARLVASAVDRNEVARAEGITAFLCGGESFNRSGPRSI*
Ga0105247_1024800523300009101Switchgrass RhizosphereTLRAIGRGFGSGTLGAAHASTATADKPTASARLVANAVERNAVALMERVTAFLCGGESFNRSGLRSI*
Ga0105238_1227458213300009551Corn RhizosphereLAAAIGVVLGTACREIGRGFGNGTFGLAHASTDIAHNPTASARLVASVVDRNVAARTEDFTVFLCGGESFNR*
Ga0105249_1320668523300009553Switchgrass RhizosphereDFGTTLRAIGRGFGMGTFGLAQACRGNAASPTASTRLVASAVDRKAAARAEGITAFLYGGESFNRSSLRSI*
Ga0126311_1115468213300010045Serpentine SoilLVCAVDFGTTLRAIGRGFGIGTFGFAQAPKGNAASPTASTKPVASAVDRKAAARAEGITAFLCGGESFNRSSLRSI*
Ga0134082_1044138423300010303Grasslands SoilRAIGRGFGSGTVGVAQASAANTDHPTTSARLVANAVDRNAVARNDGVTAFLRGESLNRSSPGCISLNMWTKY*
Ga0134109_1005348213300010320Grasslands SoilTLRAIGRGFGSGTVGVAQASAANTNNPTASARLVANAVDRNAAARNDGVTAFLRGESLNRSSPGCISLNMWTKY*
Ga0134064_1015222523300010325Grasslands SoilRGFGRGTVGFAQAFSGNAASPTASARLVASAVDRKAAARAEGITSFLCGGESFNRSSLRSI*
Ga0134063_1004772233300010335Grasslands SoilGTTLRAIGRGFGSGTVGVAQASAANTDNPTASARPVANADDRNAAARNDGVTAFLRGESLNRSSPGCISLNMWTKY*
Ga0134071_1007112933300010336Grasslands SoilAIGRGFGSGTVGVAQASAANTDNPTASARLVANADDRNAAARNDGVTAFLRGESLNRSSPGCISLNMWRKY*
Ga0134127_1193853013300010399Terrestrial SoilVDFGTTLRAIGRGFGIGTFGLAQASKGNAASPTDSTRLVASAVDRKAAARAGEITAFLYGGESFSRSSLRSI*
Ga0105246_1196142013300011119Miscanthus RhizosphereFRRVAAGGVLGTTLRAIGRGFGNGTFGLAQASTDIADSPTASARLVANAVDRNAAARAERVTAFLCGGESFTR*
Ga0120156_106793413300011996PermafrostVLVKAVLVKAVLAKVLGTTLRAIGRGFGSGTFGLAQASAVNADKPTASARLVAKAVDRNVAARAFGVTAFLRGESFNRGSLRSI*
Ga0137365_1110075123300012201Vadose Zone SoilLGTRLRAIGRGFGSGTFAQAWAIRADSPTANAKLAVNAVDRSAAARAEDFTAFLCGGESFDR*
Ga0137365_1113868123300012201Vadose Zone SoilTLRAIGRGFGSGTVGVAQASAANTDNTASARLVANADDRNAAARNDGVTAFLRGESLNRSSPGCISLNMWTKY*
Ga0137399_1076473423300012203Vadose Zone SoilVVLVEVLGTRLRAIGRGFGNGTFGLAQASAATADNTTASARLVAKAVDRNAAAREDGGTAFLRGESFNRSIPRSI*
Ga0137399_1170318623300012203Vadose Zone SoilRAIGRGFGNGTFGVAQASTADNPTASARLVAKAVDRSAAAREDRVTAFLRGESFNRPGPRSI*
Ga0150984_11246735023300012469Avena Fatua RhizosphereIGRGFGRGTFGLAQASNGNAASPTASARLVASAVDRKAVARAEGVTVFLCGGESFNRSSLRSI*
Ga0137398_1000955613300012683Vadose Zone SoilIGRGFGSGTFAWAQASTDTADRASASARPVTSAVDRNAAARTGRVTALLCGGESFNR*
Ga0137398_1041519823300012683Vadose Zone SoilGVVLGTTLRAIGRGFGSGTFDLAQASTDMADRATASARLVASAVDRNAAARVERVTVFLCGGESFNR*
Ga0157303_1019470223300012896SoilRGFGNGTLGLAQASTDIADSPTASARLVASAVDRNAAARAERVTAFLFGESFNG*
Ga0157288_1029092313300012901SoilGRGFGIGTFGWAQASRGNAASPTDSTRLVASAVDRKAAARAEGITAFLYGGESFNRSSLRSI*
Ga0137394_1041314413300012922Vadose Zone SoilMEASGTMLRAVGRGFGSGTVGVAQASTANTDNPTASARLVANFVDRNAAARNDGVTAFLRGESVNRSSPGCISLNMWTKC*
Ga0137359_1112666023300012923Vadose Zone SoilWGTTLRAIGRGLGIGTFGLAQASAVAHPRASARLVARAVDRNAAARADGVTAFLRGESINR*
Ga0137416_1168171423300012927Vadose Zone SoilTTLRAIGRGFGSGTFATAPVANDNPATSAKLVAKAVDRKAAARTDRVTAFLRGESLSLTSPTSI*
Ga0164303_1000567553300012957SoilMVLAAVFVAGALGEVLGTTLRAIGRGFGSGTVVVAEASAANTDNPTASARPVANAVDRNAAARNDGVTAFLRGESVNR
Ga0164303_1026435213300012957SoilGSGFASAWEAGFGATAAVLSGTVFGTTLRAIGRGFGNGTLAQACGTSADRPTASVNDVARAVDRNAAIRAEGFTAFLCGGESPDRSGLRSI*
Ga0164301_1049804413300012960SoilTTLRAIGRGFGIGTLVFAQASAPNANKASTRLVARAVDRNAAALEEGVTAFLRGESFNR*
Ga0164302_1021265223300012961SoilLVAGAVFFVDALGTTLRAIGRGFGSGTVGVAEASAANADNPTASARPVANGVDRNAAARNDGVTAFLRGESVNRSSPGCISLNMWTKY*
Ga0164302_1135020913300012961SoilLRAIGRGFGIGTFGVAQASTDIAERATTSARPVASAVDCNAAARAERFTAFLGGGESFNG
Ga0134076_1051185613300012976Grasslands SoilALGTTLRAIGRGFGSGTVGVAQASAANTDNPTASARLVANADDRNAAARNDGVTAFLRGESLNRSSPGCISLNMWRKY*
Ga0164309_1040270013300012984SoilAGVISGLLFGTTLRAIGRGFGSGTLAEAAVAYSPTASAKLVASAVVRNAAARSEDLTAFLCGGESSDR*
Ga0164308_1153388223300012985SoilLGEVVGTTLRAIGRGFGSGTVGVAPASAANTDNPTASARLVANAVDRNAAARNDGVTAFLRGESLNRSSPGCISLNMWTKY*
Ga0164304_1108354123300012986SoilTGTIFLAAAFVAGAVFFVEVLGTTLRAIGRAFGSGTFGVAQASGANADNPTASARLVANAVDRNGAARDDGVTAVLRGESLNRSSPRCISLNMWTKY*
Ga0157374_1125085323300013296Miscanthus RhizosphereGFGIGTFGAAQASSDIAERATTSARPVASAVDRDGAARAERFTDFLGGGESFNG*
Ga0157378_1024055513300013297Miscanthus RhizosphereAIGAAGTVAVLAAAIGVVLGTACREIGRGFGNGTFGLAQASTDIAHNPTASARLVASVVDRNVAARTEDFTVFLCGGESFNR*
Ga0157378_1092182823300013297Miscanthus RhizosphereRGFGMGTFGLAQACRGNAASPTASTRLVASAVDRKAAARAEGITAFLYGGESFNRSSLRSI*
Ga0181528_1018119723300014167BogLEEAALAGVVELFVERSGTTLRAIGRGFGNGTLGFAEASVGNADNPSATARLVANAVDRNAAARAKKVTAFLRGESLNR*
Ga0157380_1091042413300014326Switchgrass RhizosphereRAIGRGFGIGTFGLAQASRGNAASPTDSTRLVASAVDRKAARAEEITAFLCGGESFNRSSLRSI*
Ga0157380_1176298113300014326Switchgrass RhizosphereTGRGFGSGTFDLAQASTGKPDSPITSARLVASAVDRNAAARAEGVTAFLCGGESFNRSGP
Ga0182019_1031071513300014498FenTLRAIGRAFGNGTFLGVAQASPANADNPTASARQVVSAVDRNAAARLDGVTAFLRGESFNRWSPSSI*
Ga0157379_1198397123300014968Switchgrass RhizosphereAIGRGFGSGTVGVAQASAANTDNPAASARLVAKAVDRNAAARNDGVTAFLRGESVNRSSPGCISLNMWTKY*
Ga0157376_1016859113300014969Miscanthus RhizosphereGTFGLAQASTDIAHNPTASARLVASVVDRNVAARTEDFTVFLCGGESFNR*
Ga0137403_1018136913300015264Vadose Zone SoilFGSGTFGLAQADMADSPTASARLAASAVDRNAAARAGRVTAFLCGGESFNR*
Ga0134073_1008993123300015356Grasslands SoilRGFGNGTFGCAHASAPQAEKPTASARVVATAVDRNAAERLDGVTKSLRGESFDRGSPSSISLNTREKH*
Ga0132256_10133108523300015372Arabidopsis RhizosphereGTLGWAQASTEMAATSTTSPDASAVDRKAAARANGVTAFLFGESFNG*
Ga0132257_10120042313300015373Arabidopsis RhizosphereWGTTLREIGRGLGIGTLGWAQASTEMAATSTTSPVASAVDRKAAARANGVTAFLFGESFNG*
Ga0187887_1005846713300018043PeatlandAIGRGFGNGTFCLAHASAAQTDKPTVSARLVANAVDRNAAAREDEVTGIPDGESFNRSSPSSI
Ga0184620_1001238523300018051Groundwater SedimentMGVVLGTACLEIGRGFGNGTFGLAQASTDIADSPTASARLVANVVDRNVAARMEDLTVFLCGGESFNR
Ga0066655_1053008113300018431Grasslands SoilPAVFVAGAVFLAEALGTTLRAIGRGFGSGTVGVAQASAANTDNPTASARLVANADDRNAAARNDGVTAFLRGESLNRSSPGCISLNMWRKY
Ga0066667_1018890813300018433Grasslands SoilGVGLAVVALMGVVLGMTLRAIGRGFGNGTFGLAQASAEMADSPTASVRLVASAVDRNTAARAERVTAFLCGGESFNRSSLRSI
Ga0193722_103069313300019877SoilVLGTACLEIGRGFGNGTFGLAQASTDIADSPTASARLVANVVDRNVAARMEDFTVFLCGGESFNR
Ga0193730_112910823300020002SoilFLAEASGTMLRAAGRGFGSGTVGVAQASTANTDNATASARLVADAVDRNAVARNDGVTVFLRGESLNRSSPGCISLNMWTKY
Ga0210410_1120367313300021479SoilVLAEVLGTTLRAIGRGFGIGTLVFAQASAPNANKASTRLVARAVDRNAAALEEGVTAFLRGESFNR
Ga0207656_1038108723300025321Corn RhizosphereGAAATVAVLAAAIGVVLGTACREIGRGFGNGTFGLAQASTDIAHNPTASARLVASVVDRNVAARTEDFTVFLCGGESFNR
Ga0208078_100564753300025544Arctic Peat SoilIAAGAVFLAAVAAEVFLADVVGTTPRAIGRGFGSGTFGLAQASAANTDNPTDSTRLVANALDRNAAEREDGVTAFPDGESFNR
Ga0207688_1057524823300025901Corn, Switchgrass And Miscanthus RhizosphereAIGRGFGNGTFGWAQASTDIADSPTASTRPVASAVDRNAAARTERVTDFLCGGESLNRSSLRSI
Ga0207664_1063513323300025929Agricultural SoilGRGFGSGTFGLAQASPAIAVKPTASARLVASAVDRKAAARAKRVTVFLCGGESFNH
Ga0207644_1029211013300025931Switchgrass RhizosphereAGVVLGTILRAMGRGLGNGTFGLAQASTEMADSPTASARLVASALDRNAARRTERITAFLCGGESFTR
Ga0207709_1038258313300025935Miscanthus RhizosphereLGTTLRAIGRGFGNGTFGLAQASTDIADSPTASAKLVANAVDRNAAARAERVTAFLCGGESFTR
Ga0207669_1067118913300025937Miscanthus RhizosphereAPAWAIGRGFGNGTSAKASETRSDRPTASASDVATAVDRNAVLRAEGVTAFLCGGESLDRSGPRSI
Ga0207640_1091768723300025981Corn RhizosphereTALRAIGRGFGNGTFGAAQAATAVNPTASARPVAKAVDRNAREDGVTGFLRGESFNRSSPGSI
Ga0207702_1195067813300026078Corn RhizosphereATVAVLAAAIGVVLGTACREIGRGFGNGTFGLAQASTDIAHNPTASARLVASVVDRNVAARTEDFTVFLCGGESFNR
Ga0207675_10236065723300026118Switchgrass RhizosphereIGVVLGTTLRAIGRGFGNGTFGLSKACAEIADSPTASARLVASAVDRNAAARADRVKAFPNGESFNR
Ga0209131_102634613300026320Grasslands SoilLLVEALGTTLRAMGRGFGSGTVGVAQASAANTDNPTASAKLVANAVDRNAAARNDGVTAFLRGESLNRSSPGCISLNMWTKY
Ga0257177_101757423300026480SoilFLVEALGTTLRAIGRGFGSGTVGVAQASAANTDSPTASARLVANAVDRNAAARNDGVTAFLRGESLNRSSPGCISLNMWTKY
Ga0208994_107597813300027164Forest SoilGFVATVVLGTTLRAIGRGFGSGTFALAQASTANADNPTASAKLVLRAVHRMAVARANGFTALFPGESSNRASLGLFH
Ga0209529_103864623300027334Forest SoilALLGVLAAMLRAIGRGLGSGTLAQASAANNPATSVRLVARAVDRNAAAREGEVTGIS
Ga0209332_102443823300027439Forest SoilGRGFGSGTFGLAQASAVNADKPTASVRLVAKAVDRNVAARAFGVTAFLRGESFNR
Ga0209117_105312523300027645Forest SoilLGTTLRAIGRGLGNGTFAQASTANADNPTASARLVARAVDRNAVAREDGVTAFFRGESLN
Ga0209333_112514913300027676Forest SoilLFLAEFLAAGVVLGAMLRAIGRGFGSGTFGLAAASAGHADNPTASAKPVAHTVDRKAADRKDWVTTFLRGESFDRSSSRSI
Ga0208991_122767123300027681Forest SoilGAVFLVAVFGAGAVILAVVLGTTLRAIGRGFGNGTFGLAQACPANADNPTASARLVARAVDRNAAARADGFTAFPDGESFNRGSPSSI
Ga0209180_1028875423300027846Vadose Zone SoilAVFLVEALGTMLRAIGRGFGSGTVGVAQASAANTDNPTASARLVANAVDRNAAARNDGVTAFLRGESLNRSSPGCISLNMWTKY
Ga0209382_1125374613300027909Populus RhizosphereFGTGTFGVARASKGNDSPTASARLVASAVDRKAVARANGITVFLCGGESFNRSSLRSI
Ga0209583_1018912123300027910WatershedsVAGTTLRAIGRGFGSGTFGLAQASAATTDNPTDNSRLAANAVGRNAAAREDGVTAFPDGESFNR
Ga0209698_1023743333300027911WatershedsLGTALRAIGRGFGNGTFALDEACAVHADKPTASTRLIARAVERFAATRMQGFTAFLRGESFRR
Ga0209526_1017678123300028047Forest SoilVVVDVLVDGFLGTTLRAIGRGFGNGTFALAAQASAANADHPTASARLVANALDRNAAARMRGFTAFLRGESFNG
Ga0268266_1038515313300028379Switchgrass RhizosphereVGLKAVGLAGAGLAGVELTGVVLGTTLRAIGRGFGNGTFGFAQAFAEIADNPTASARLVASAVDRNAAARTERVTAFLCGGESFTR
Ga0307311_1004394723300028716SoilIGVWAAAGALVCAVDFGTTLRAIGRGFGIGTFGLAQASRGNTASPTDSTRLVASAVDRKAAARAEGITAFLCGGESFNRSCLRSI
Ga0307299_1028303713300028793SoilAIGRGFGIGTFGVAQASTDMPDSATASARPVASAVDRNAAARAERVTAFLCGGESFTR
Ga0307305_1020501523300028807SoilLMEASGTMLRAVGRGFGSGTVGVAQASTANTDNPTASARLVANAVDRNAAARNDGVTAFLRGESLNRSSPRGISLNMWTKY
Ga0311371_1048243113300029951PalsaLVLGTTLRAIGRGLGSGTFGLVAASAVHVDNPEASKPKASAKLVARAVDRNALARADRVTALLRGESFNR
Ga0302180_1010612813300031028PalsaLAAFLVPDVVLGTMLRAIGRGFGNGTFGVAAASAAHADNPTASARLVANAVDRKAAARLDWVTTFLRGESFNASSSRSI
Ga0170823_1743336523300031128Forest SoilVVLGTAAREIGRGFGNGTFGLAHASTDIADSPIASARLVASAVERNAAARAEGFTAFLCGGESFNRSSLRSI
Ga0307498_1028193123300031170SoilRGLGIGTFGFAQASGVGHPMASTRLVARAVDRNAVARADGVTAFLRGESINR
Ga0302320_1114368723300031524BogATTLRAIGRGFGNGTLEFVAASAANPDKPTATARLVANAVDRNVAARAKRVTAFLRGESLNR
Ga0307516_1071699113300031730EctomycorrhizaFGTALRAIGRGFGSGTFGLAHASAAIVDRPTASARLVASAVERNAVALMERVTAFLCGGESFNRSSLRSI
Ga0307477_1048717323300031753Hardwood Forest SoilVVLGTTLRAIGRGFGNGTLGLAEASAAQIPAASIRLVAKAVDRNAAAREGAVTTFPDGESFNR
Ga0302322_10195856213300031902FenLVAGADLGTTLRAIGRGFGRGTLAPAAGAIKDKPTAIARLVTNAVERNAVARADRVTAFLCGGESLNRSSLRSI
Ga0371488_0254552_102_3413300033983Peat SoilLEEAALAGVVELFVERSGTTLRAIGRGLGNGTLGFAEASVGNADNPSATARLVANAVDRNAAARAKKVTAFLRGESLNR
Ga0326723_0145102_469_7083300034090Peat SoilLVPVLEAVFPAGAVFLAGLGTTLRAIGRGLGIGTFGFAQASGVGHPMASTRLVARAVDRNAVARADGVTAFLRGESINR
Ga0372943_0271579_827_10363300034268SoilLGTALRAIGRGFGNGTFGLAHASTESADRPTASARLVASAVDRNAAVRAEGVTAFLGGESFNRSGLRSI
Ga0372946_0028506_2091_23213300034384SoilMVVLVEALGAMLRAIGRGFGNGTFGMAQASAATADNTTASARLVAKAVDRNAAAREDGGTAFLRGESFNRSIPRSI

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.