NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F069904

Metagenome / Metatranscriptome Family F069904

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F069904
Family Type Metagenome / Metatranscriptome
Number of Sequences 123
Average Sequence Length 46 residues
Representative Sequence LVKAIEGLDSDRLRAMAKASAAAGRRDAAQRVLAVLREVARR
Number of Associated Samples 98
Number of Associated Scaffolds 123

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.81 %
% of genes near scaffold ends (potentially truncated) 99.19 %
% of genes from short scaffolds (< 2000 bps) 86.18 %
Associated GOLD sequencing projects 87
AlphaFold2 3D model prediction Yes
3D model pTM-score0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (100.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(33.333 % of family members)
Environment Ontology (ENVO) Unclassified
(32.520 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(56.098 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 50.00%    β-sheet: 0.00%    Coil/Unstructured: 50.00%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.52
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 123 Family Scaffolds
PF08245Mur_ligase_M 58.54
PF01225Mur_ligase 30.08
PF02873MurB_C 4.88
PF01820Dala_Dala_lig_N 2.44
PF01565FAD_binding_4 1.63
PF08478POTRA_1 0.81
PF06947DUF1290 0.81
PF07478Dala_Dala_lig_C 0.81

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 123 Family Scaffolds
COG0769UDP-N-acetylmuramyl tripeptide synthaseCell wall/membrane/envelope biogenesis [M] 30.08
COG0770UDP-N-acetylmuramyl pentapeptide synthaseCell wall/membrane/envelope biogenesis [M] 30.08
COG0773UDP-N-acetylmuramate-alanine ligase MurC and related ligases, MurC/Mpl familyCell wall/membrane/envelope biogenesis [M] 30.08
COG0812UDP-N-acetylenolpyruvoylglucosamine reductaseCell wall/membrane/envelope biogenesis [M] 4.88
COG1181D-alanine-D-alanine ligase or related ATP-grasp enzymeCell wall/membrane/envelope biogenesis [M] 2.44
COG1589Cell division septal protein FtsQCell cycle control, cell division, chromosome partitioning [D] 0.81
COG3856Small basic protein Sbp (function unknown), DUF1290 domainFunction unknown [S] 0.81
COG4775Outer membrane protein assembly factor BamACell wall/membrane/envelope biogenesis [M] 0.81

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms100.00 %
UnclassifiedrootN/A0.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2170459007|GJ61VE201DNMLCAll Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_2_65_11500Open in IMG/M
3300001154|JGI12636J13339_1007707All Organisms → cellular organisms → Bacteria1711Open in IMG/M
3300001661|JGI12053J15887_10219415All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_2_65_11957Open in IMG/M
3300001661|JGI12053J15887_10634674All Organisms → cellular organisms → Bacteria508Open in IMG/M
3300005175|Ga0066673_10019697All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes3085Open in IMG/M
3300005176|Ga0066679_10043185All Organisms → cellular organisms → Bacteria2558Open in IMG/M
3300005186|Ga0066676_10802852All Organisms → cellular organisms → Bacteria637Open in IMG/M
3300005187|Ga0066675_10438830All Organisms → cellular organisms → Bacteria969Open in IMG/M
3300005406|Ga0070703_10032253All Organisms → cellular organisms → Bacteria1590Open in IMG/M
3300005435|Ga0070714_101795097All Organisms → cellular organisms → Bacteria599Open in IMG/M
3300005468|Ga0070707_101740307All Organisms → cellular organisms → Bacteria590Open in IMG/M
3300005471|Ga0070698_102188298All Organisms → cellular organisms → Bacteria506Open in IMG/M
3300005534|Ga0070735_10672594All Organisms → cellular organisms → Bacteria612Open in IMG/M
3300005537|Ga0070730_10341604All Organisms → cellular organisms → Bacteria975Open in IMG/M
3300005538|Ga0070731_10595196All Organisms → cellular organisms → Bacteria736Open in IMG/M
3300005542|Ga0070732_10032370All Organisms → cellular organisms → Bacteria2981Open in IMG/M
3300005542|Ga0070732_10646591All Organisms → cellular organisms → Bacteria643Open in IMG/M
3300005552|Ga0066701_10302502All Organisms → cellular organisms → Bacteria991Open in IMG/M
3300005557|Ga0066704_10099362All Organisms → cellular organisms → Bacteria1909Open in IMG/M
3300005559|Ga0066700_10227812All Organisms → cellular organisms → Bacteria1296Open in IMG/M
3300005561|Ga0066699_10345305All Organisms → cellular organisms → Bacteria1063Open in IMG/M
3300005569|Ga0066705_10096527All Organisms → cellular organisms → Bacteria1750Open in IMG/M
3300005575|Ga0066702_10214039All Organisms → cellular organisms → Bacteria1170Open in IMG/M
3300005575|Ga0066702_10956497All Organisms → cellular organisms → Bacteria512Open in IMG/M
3300005586|Ga0066691_10009394All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes4484Open in IMG/M
3300005586|Ga0066691_10097651All Organisms → cellular organisms → Bacteria1645Open in IMG/M
3300005764|Ga0066903_108011205All Organisms → cellular organisms → Bacteria542Open in IMG/M
3300006041|Ga0075023_100292570All Organisms → cellular organisms → Bacteria668Open in IMG/M
3300006046|Ga0066652_100083357All Organisms → cellular organisms → Bacteria2530Open in IMG/M
3300006796|Ga0066665_10547687All Organisms → cellular organisms → Bacteria941Open in IMG/M
3300006797|Ga0066659_11296836All Organisms → cellular organisms → Bacteria607Open in IMG/M
3300006800|Ga0066660_10941073All Organisms → cellular organisms → Bacteria700Open in IMG/M
3300006800|Ga0066660_11554310All Organisms → cellular organisms → Bacteria523Open in IMG/M
3300006804|Ga0079221_10482194All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia798Open in IMG/M
3300007258|Ga0099793_10292007All Organisms → cellular organisms → Bacteria791Open in IMG/M
3300007265|Ga0099794_10156024All Organisms → cellular organisms → Bacteria1160Open in IMG/M
3300009038|Ga0099829_11457883All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_2_65_11565Open in IMG/M
3300009088|Ga0099830_10302825All Organisms → cellular organisms → Bacteria1276Open in IMG/M
3300009088|Ga0099830_10401843All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_2_65_111108Open in IMG/M
3300009088|Ga0099830_11223597All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_2_65_11624Open in IMG/M
3300009088|Ga0099830_11486462All Organisms → cellular organisms → Bacteria564Open in IMG/M
3300009089|Ga0099828_10831519All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_2_65_11826Open in IMG/M
3300009090|Ga0099827_10090198All Organisms → cellular organisms → Bacteria2415Open in IMG/M
3300009137|Ga0066709_101853005All Organisms → cellular organisms → Bacteria843Open in IMG/M
3300010303|Ga0134082_10328816All Organisms → cellular organisms → Bacteria644Open in IMG/M
3300010320|Ga0134109_10242369All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_2_20CM_2_66_6677Open in IMG/M
3300010333|Ga0134080_10347205All Organisms → cellular organisms → Bacteria675Open in IMG/M
3300010337|Ga0134062_10021014All Organisms → cellular organisms → Bacteria2499Open in IMG/M
3300011271|Ga0137393_10204332All Organisms → cellular organisms → Bacteria1667Open in IMG/M
3300011999|Ga0120148_1044963All Organisms → cellular organisms → Bacteria909Open in IMG/M
3300012189|Ga0137388_10662680All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_2_65_11970Open in IMG/M
3300012189|Ga0137388_11773770All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_2_65_11550Open in IMG/M
3300012202|Ga0137363_10539625All Organisms → cellular organisms → Bacteria982Open in IMG/M
3300012203|Ga0137399_10166181All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1773Open in IMG/M
3300012203|Ga0137399_10291275All Organisms → cellular organisms → Bacteria1347Open in IMG/M
3300012204|Ga0137374_10075601All Organisms → cellular organisms → Bacteria3291Open in IMG/M
3300012206|Ga0137380_10370904All Organisms → cellular organisms → Bacteria1274Open in IMG/M
3300012206|Ga0137380_10950254All Organisms → cellular organisms → Bacteria736Open in IMG/M
3300012207|Ga0137381_10354066All Organisms → cellular organisms → Bacteria1280Open in IMG/M
3300012211|Ga0137377_11306984All Organisms → cellular organisms → Bacteria655Open in IMG/M
3300012285|Ga0137370_10135777All Organisms → cellular organisms → Bacteria1413Open in IMG/M
3300012350|Ga0137372_10411917All Organisms → cellular organisms → Bacteria1021Open in IMG/M
3300012351|Ga0137386_10996916All Organisms → cellular organisms → Bacteria596Open in IMG/M
3300012361|Ga0137360_10032886All Organisms → cellular organisms → Bacteria3605Open in IMG/M
3300012917|Ga0137395_10117454All Organisms → cellular organisms → Bacteria1787Open in IMG/M
3300012917|Ga0137395_11265298All Organisms → cellular organisms → Bacteria512Open in IMG/M
3300012918|Ga0137396_10298419All Organisms → cellular organisms → Bacteria1191Open in IMG/M
3300012918|Ga0137396_10482365All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_2_65_11919Open in IMG/M
3300012925|Ga0137419_10162772All Organisms → cellular organisms → Bacteria1621Open in IMG/M
3300012925|Ga0137419_10999659All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_2_65_11693Open in IMG/M
3300012927|Ga0137416_10044294All Organisms → cellular organisms → Bacteria3074Open in IMG/M
3300012927|Ga0137416_10145680All Organisms → cellular organisms → Bacteria1847Open in IMG/M
3300012927|Ga0137416_11250565All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_2_65_11670Open in IMG/M
3300012930|Ga0137407_10867764All Organisms → cellular organisms → Bacteria853Open in IMG/M
3300012986|Ga0164304_11777197All Organisms → cellular organisms → Bacteria516Open in IMG/M
3300013763|Ga0120179_1089660All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_2_65_11682Open in IMG/M
3300014823|Ga0120170_1050233All Organisms → cellular organisms → Bacteria940Open in IMG/M
3300014829|Ga0120104_1085457All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_2_65_11622Open in IMG/M
3300015079|Ga0167657_1015672All Organisms → cellular organisms → Bacteria1013Open in IMG/M
3300018433|Ga0066667_10221398All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_2_20CM_2_66_61410Open in IMG/M
3300018468|Ga0066662_12949329All Organisms → cellular organisms → Bacteria505Open in IMG/M
3300018482|Ga0066669_10483058All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_2_20CM_2_66_61070Open in IMG/M
3300018482|Ga0066669_11828445All Organisms → cellular organisms → Bacteria562Open in IMG/M
3300020581|Ga0210399_10988088All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_2_65_11679Open in IMG/M
3300021046|Ga0215015_10299567All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_2_65_11502Open in IMG/M
3300021559|Ga0210409_10774511All Organisms → cellular organisms → Bacteria832Open in IMG/M
3300021559|Ga0210409_11192170All Organisms → cellular organisms → Bacteria637Open in IMG/M
3300021559|Ga0210409_11435504All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_2_65_11566Open in IMG/M
3300021560|Ga0126371_11542417All Organisms → cellular organisms → Bacteria792Open in IMG/M
3300025885|Ga0207653_10036893All Organisms → cellular organisms → Bacteria1593Open in IMG/M
3300025922|Ga0207646_10332203All Organisms → cellular organisms → Bacteria1373Open in IMG/M
3300025922|Ga0207646_10550714All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_2_65_111037Open in IMG/M
3300025922|Ga0207646_11763159All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_2_65_11530Open in IMG/M
3300026271|Ga0209880_1011986All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae2268Open in IMG/M
3300026296|Ga0209235_1237821All Organisms → cellular organisms → Bacteria572Open in IMG/M
3300026308|Ga0209265_1237202All Organisms → cellular organisms → Bacteria505Open in IMG/M
3300026313|Ga0209761_1276960All Organisms → cellular organisms → Bacteria605Open in IMG/M
3300026317|Ga0209154_1125641All Organisms → cellular organisms → Bacteria1082Open in IMG/M
3300026320|Ga0209131_1066053All Organisms → cellular organisms → Bacteria1992Open in IMG/M
3300026322|Ga0209687_1019705All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae2216Open in IMG/M
3300026323|Ga0209472_1153138All Organisms → cellular organisms → Bacteria860Open in IMG/M
3300026331|Ga0209267_1264780All Organisms → cellular organisms → Bacteria586Open in IMG/M
3300026335|Ga0209804_1283971All Organisms → cellular organisms → Bacteria → Terrabacteria group574Open in IMG/M
3300026524|Ga0209690_1161168All Organisms → cellular organisms → Bacteria801Open in IMG/M
3300026532|Ga0209160_1000568All Organisms → cellular organisms → Bacteria30781Open in IMG/M
3300026547|Ga0209156_10396509All Organisms → cellular organisms → Bacteria579Open in IMG/M
3300026551|Ga0209648_10458851All Organisms → cellular organisms → Bacteria783Open in IMG/M
3300027565|Ga0209219_1010500All Organisms → cellular organisms → Bacteria2136Open in IMG/M
3300027643|Ga0209076_1194545All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_2_65_11558Open in IMG/M
3300027725|Ga0209178_1017354All Organisms → cellular organisms → Bacteria2247Open in IMG/M
3300027846|Ga0209180_10463225All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_2_65_11713Open in IMG/M
3300027862|Ga0209701_10311328All Organisms → cellular organisms → Bacteria901Open in IMG/M
3300027862|Ga0209701_10634786All Organisms → cellular organisms → Bacteria561Open in IMG/M
3300027986|Ga0209168_10457260All Organisms → cellular organisms → Bacteria618Open in IMG/M
3300028536|Ga0137415_10105165All Organisms → cellular organisms → Bacteria2673Open in IMG/M
3300028536|Ga0137415_10137255All Organisms → cellular organisms → Bacteria2286Open in IMG/M
3300028536|Ga0137415_10373250All Organisms → cellular organisms → Bacteria1230Open in IMG/M
3300028807|Ga0307305_10080184All Organisms → cellular organisms → Bacteria1507Open in IMG/M
3300028906|Ga0308309_11077389All Organisms → cellular organisms → Bacteria695Open in IMG/M
3300029636|Ga0222749_10480822All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_2_65_11669Open in IMG/M
3300031561|Ga0318528_10329062All Organisms → cellular organisms → Bacteria820Open in IMG/M
3300032180|Ga0307471_100939812All Organisms → cellular organisms → Bacteria1032Open in IMG/M
3300032180|Ga0307471_102592729All Organisms → cellular organisms → Bacteria642Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil33.33%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil21.14%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil7.32%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere5.69%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil4.88%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil4.88%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil3.25%
PermafrostEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost3.25%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil3.25%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.44%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.63%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.63%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.81%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil0.81%
Glacier Forefield SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil0.81%
Grass SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil0.81%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Soil0.81%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.81%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.81%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil0.81%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil0.81%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2170459007Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 10-21cmEnvironmentalOpen in IMG/M
3300001154Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1EnvironmentalOpen in IMG/M
3300001661Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)EnvironmentalOpen in IMG/M
3300005175Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122EnvironmentalOpen in IMG/M
3300005176Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128EnvironmentalOpen in IMG/M
3300005186Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125EnvironmentalOpen in IMG/M
3300005187Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124EnvironmentalOpen in IMG/M
3300005406Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaGEnvironmentalOpen in IMG/M
3300005435Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaGEnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005471Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaGEnvironmentalOpen in IMG/M
3300005534Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1EnvironmentalOpen in IMG/M
3300005537Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1EnvironmentalOpen in IMG/M
3300005538Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1EnvironmentalOpen in IMG/M
3300005542Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1EnvironmentalOpen in IMG/M
3300005552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150EnvironmentalOpen in IMG/M
3300005557Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153EnvironmentalOpen in IMG/M
3300005559Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149EnvironmentalOpen in IMG/M
3300005561Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148EnvironmentalOpen in IMG/M
3300005569Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154EnvironmentalOpen in IMG/M
3300005575Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151EnvironmentalOpen in IMG/M
3300005586Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006041Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014EnvironmentalOpen in IMG/M
3300006046Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101EnvironmentalOpen in IMG/M
3300006796Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114EnvironmentalOpen in IMG/M
3300006797Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108EnvironmentalOpen in IMG/M
3300006800Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109EnvironmentalOpen in IMG/M
3300006804Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200EnvironmentalOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300010303Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015EnvironmentalOpen in IMG/M
3300010320Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015EnvironmentalOpen in IMG/M
3300010333Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010337Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015EnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300011999Permafrost microbial communities from Nunavut, Canada - A28_65cm_6MEnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012204Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012285Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012350Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012351Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012986Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MGEnvironmentalOpen in IMG/M
3300013763Permafrost microbial communities from Nunavut, Canada - A15_65cm_0MEnvironmentalOpen in IMG/M
3300014823Permafrost microbial communities from Nunavut, Canada - A3_80cm_0MEnvironmentalOpen in IMG/M
3300014829Permafrost microbial communities from Nunavut, Canada - A10_35cm_6MEnvironmentalOpen in IMG/M
3300015079Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-6b, vegetation/snow interface)EnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300021046Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depthEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300025885Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026271Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-191 (SPAdes)EnvironmentalOpen in IMG/M
3300026296Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026308Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103 (SPAdes)EnvironmentalOpen in IMG/M
3300026313Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026317Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)EnvironmentalOpen in IMG/M
3300026320Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026322Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 (SPAdes)EnvironmentalOpen in IMG/M
3300026323Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)EnvironmentalOpen in IMG/M
3300026331Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)EnvironmentalOpen in IMG/M
3300026335Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)EnvironmentalOpen in IMG/M
3300026524Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)EnvironmentalOpen in IMG/M
3300026532Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)EnvironmentalOpen in IMG/M
3300026547Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)EnvironmentalOpen in IMG/M
3300026551Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)EnvironmentalOpen in IMG/M
3300027565Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027643Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)EnvironmentalOpen in IMG/M
3300027725Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)EnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027862Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027986Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300028807Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186EnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300029636Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031561Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
L02_052489102170459007Grass SoilGLTAERLQEMAKASAAVGRRDAAQRVLSVLKEVVGA
JGI12636J13339_100770733300001154Forest SoilIASLDDDRLRAMAKASAATGRRDAAKRVLAVLHEVARKT*
JGI12053J15887_1021941523300001661Forest SoilTLVAALDSLTPERLRAMAKASAAVGRRDAAKRVLAVLHEVAGR*
JGI12053J15887_1063467423300001661Forest SoilAELTGPSLVATINSLDDQRLRAMAMASTAAGRRDAARRVLAILHEVARR*
Ga0066673_1001969743300005175SoilLVKAIEGLDSDRLRAMAKASAAAGRRDAAQRVLAVLREVARR*
Ga0066679_1004318513300005176SoilLTGDSLVKAIEGLDSDRLRAMAKASAAAGRRDAAQRVLTVLREVARR*
Ga0066676_1080285213300005186SoilDDDLTGDSLVKAIEGLDSDRLRAMAKASAAAGRRDAAQRVLAVLREVARR*
Ga0066675_1043883013300005187SoilTGEALVGAIESLDDGRLRTMAAASARTGRRDAAQRVLSVLHEVARK*
Ga0070703_1003225313300005406Corn, Switchgrass And Miscanthus RhizosphereAGAAAQIADDDLTASTLVNTIDGLDADRLHAMAKASAASGRRDAAQRVLAVLHEVVRR*
Ga0070714_10179509713300005435Agricultural SoilATIKALDSDRFRAMAQASAAAGRRDAADRVLRVLRDVARK*
Ga0070707_10174030723300005468Corn, Switchgrass And Miscanthus RhizosphereATLDGLSAERLRAMAKASAGAGRRDAAQRVLAVLHEMAGT*
Ga0070698_10218829813300005471Corn, Switchgrass And Miscanthus RhizosphereTIDGLDADRLRAMAKASAASGRRDAAQRVLAVLHEVVRR*
Ga0070735_1067259423300005534Surface SoilAAIRIADGELSGETLLQAIDSLEPERLRAMADASSAAGRRDAAERVLGVLREVARR*
Ga0070730_1034160413300005537Surface SoilLDDARLRAMAHASAAAGRRDAAERVLHVLHEVAMR*
Ga0070731_1059519623300005538Surface SoilTSETLLRALDSLRPQDLRAMAAASARLGRPDAAQRVLEVLRSVA*
Ga0070732_1003237043300005542Surface SoilDTLDEAKVRAMAQASAAAGRRDAARRVLAVLREVAAR*
Ga0070732_1064659123300005542Surface SoilIANAELTGPSLVTAIANLDEPRLRAMAKASAAAGRRDAAQRVLGLLHEVTGR*
Ga0066701_1030250213300005552SoilENAAAMVSAGAAVTIADHELDGDSLLRTIDGLEADRIRAMARASAAAGRHDAAQRVLAVLHEVVSR*
Ga0066704_1009936213300005557SoilSTLVAALDSLTPERLRAMAKASAAVGRRDAAKRVLAVLHEVAAR*
Ga0066700_1022781223300005559SoilESLDGDRLRAMAKASAAAGRRDAAKRVLAVLHEVANR*
Ga0066699_1034530523300005561SoilDDLTGETLVNAIAGLDGDRLRGMAAASARTGRRDAAKRVLAVLHEVARK*
Ga0066705_1009652733300005569SoilELSGEALMRAVESLDGDRLRAMAKASAAAGRRDAAKRVLAVLHEVANR*
Ga0066702_1021403923300005575SoilDGLDAERLRAMAKASAAAGRRDAAQRVLAVLREVVGK*
Ga0066702_1095649723300005575SoilIESLDDGRLRTMAAASARTGRRDAAQRVLSVLHEVARK*
Ga0066691_1000939413300005586SoilALRIADEELTGESLVRAIASLDASRLRAMAKASAASGRRDAAQRVLRVLHEAVRR*
Ga0066691_1009765113300005586SoilAIESLDGDRLRAMAKASAAAGRRDAAKRVLAVLHEVANR*
Ga0066903_10801120513300005764Tropical Forest SoilDDELTGARLVATIASLDDAKLRAMASASAAAGKPDAAKRVLAVLREVAKK*
Ga0075023_10029257023300006041WatershedsLNGASLVATIKGLDGDRLRAMARASASLGRRDAAQRVLRVLREVARS*
Ga0066652_10008335713300006046SoilGAAVRIADDDLSGETLLRTLEGLDAERLRAMAGASAAAGRRDAAQRVLAVLHEVVNRT*
Ga0066665_1054768723300006796SoilVRAIAGLEDARLRAMAAASARSGRLDAAKRVLAVLHEVARK*
Ga0066659_1129683613300006797SoilIADDELDGDSLLRTIDGLDADRLRAMAKASAEAGRRDAAQRVLAVLREVVRK*
Ga0066660_1094107323300006800SoilDEDLTGDSLMKTIAGLDNHRLQAMAKASAALGRRDAAQRVLRVLHEVVGS*
Ga0066660_1155431023300006800SoilLVRTLDSLDEARLVAMAKASAAAGGRDAAGRVLQVLREVVRR*
Ga0079221_1048219413300006804Agricultural SoilLQPDQLRSMAAASAKSGRRDAAQRVLEVVREVARR*
Ga0099793_1029200713300007258Vadose Zone SoilIDGLDADRLRTMAKASAEAGRRDAAQRVLVVLREVVRK*
Ga0099794_1015602413300007265Vadose Zone SoilTGPTLVATINGLDDQRLRAMARASTAAGRRDAAKRVLAILHEVARR*
Ga0099829_1145788313300009038Vadose Zone SoilTLDSLNADRLRAMAKASAGAGRRDAAQRVLAVLREVART*
Ga0099830_1030282523300009088Vadose Zone SoilAVRIDDADLSGESLVAAIDRLDPERLRSMAKASAAAGRRDGAQRVLAVLHEVAGK*
Ga0099830_1040184323300009088Vadose Zone SoilALTPDRLRAMATASASAGRRDAAEHVLAVVHEVVAGR*
Ga0099830_1122359723300009088Vadose Zone SoilAMVDVGAAVRIAYGDLSPATLLTAIDGLSDERLIAMAKASAATGRRDAAQRVLAVLHRVAGK*
Ga0099830_1148646213300009088Vadose Zone SoilIKALSSEQLRAMAKASNTAGRRDAAQRVLRVLHEVARR*
Ga0099828_1083151913300009089Vadose Zone SoilEAGAAERIGDAELSGESLVAAIDRLDPERLRSMARASAAAGRRDGAQQVLAVLHEVAGR*
Ga0099827_1009019843300009090Vadose Zone SoilALSSEQLRAMAKASNSAGRRDAAQLVLRVLHEVARR*
Ga0066709_10185300523300009137Grasslands SoilVASLESLTDARLREMAAASAKVGRRDAARRVLAVLHEVLGR*
Ga0134082_1032881623300010303Grasslands SoilEAMVAAGTAIRISDDALTGDSLLRALDGLDGERLRGMARASAAAGRRDAAQRVVAVLHEVAENQMDKS*
Ga0134109_1024236913300010320Grasslands SoilADEELTGDTLMRAIASLDEGRLRAMAKASAATGRRDAAQSVLRVLHQVSGK*
Ga0134080_1034720513300010333Grasslands SoilPAIARRRSASRPSDDDLSGETLLRTLEGLDAERLRAMAGASAAAGRRDAAQRVLAVLHEVVNRT*
Ga0134062_1002101413300010337Grasslands SoilDAITGDSLLRALDGLDGERLRAMARASAAAGRRDAAQRVVAVLHEVAENQMDKS*
Ga0137393_1020433213300011271Vadose Zone SoilLDRLSTDRLRAMAKASAGAGRRDAAQRVLAVLHEVARK*
Ga0120148_104496313300011999PermafrostVATIAGLDDDRLRAMAKASASAGRRDAAARVLAVLREVAKH*
Ga0137388_1066268013300012189Vadose Zone SoilSDERLSAMAKASAATGRRDAAERVLAVLHRVAGK*
Ga0137388_1177377023300012189Vadose Zone SoilDLNPTSLVTAIDGLDAERLRAMAKASSAAGRRDAAERVLAVLHRVAGK*
Ga0137363_1053962513300012202Vadose Zone SoilIKALNREQLRAMAKASNAAGRRDAAQRVLRVLHEVARR*
Ga0137399_1016618133300012203Vadose Zone SoilDSLLRTIDGLDADRIRAMAKASAAAGRHDAAQRVLAVLREVVSR*
Ga0137399_1029127523300012203Vadose Zone SoilAVRIADRDLNPSTLVAALDSLTPERLRAMAKASAAAGRRDAAKRVLAVLHEVAGR*
Ga0137374_1007560113300012204Vadose Zone SoilLDGLTPERLQAMARASSAAGRRDAAQQVLAVLHQVARK*
Ga0137380_1037090413300012206Vadose Zone SoilLDNLTSAQLRAMAQASSAAGRRDAAQRVLEVVREVAHR*
Ga0137380_1095025423300012206Vadose Zone SoilSLLRALDSLDGERLRAMARASAAAGRRDAAQRVVAVLHEVAENQMDKS*
Ga0137381_1035406623300012207Vadose Zone SoilATAMVNAGAAMRIADDELSGETLLKAIEGLDPDHLRAMAKASAATGRRDAAQRVLAVLHEVVKK*
Ga0137377_1130698423300012211Vadose Zone SoilAMRIADDELSGETLLKAIEGLDPDHLRAMAKASAATGRRDAAQRVLAVLHEVVKK*
Ga0137370_1013577713300012285Vadose Zone SoilLITVLDGLPTEYLRSMAGASAAIGRRDAAQRVLRVLHEVVGS*
Ga0137372_1041191723300012350Vadose Zone SoilSGETLLKAIEGLDPDHLRAMAKASAATGRRDAAQRVLAVLHEVVKK*
Ga0137386_1099691613300012351Vadose Zone SoilIADDDLTGDSLVKSIEGLDSDRLRAMAKASAAAGRRDAAQRVLTVLREVARR*
Ga0137360_1003288653300012361Vadose Zone SoilTSAQLRAMAQASSGAGRRDAAQRVLEVVREVARR*
Ga0137395_1011745433300012917Vadose Zone SoilRIADGDLSPATLLRTIDGLSDERLRAMAKASAATGRRDAAQRVMAVLHRVASK*
Ga0137395_1126529813300012917Vadose Zone SoilGATLVATINGLDDERLRAMAKSSAAAGRRDAAKRVLAILHEVARR*
Ga0137396_1029841923300012918Vadose Zone SoilVRIGDADLNPASLVAAIDALTPERLRAMVRASAATGRRDAAKRVLAVLREVARK*
Ga0137396_1048236513300012918Vadose Zone SoilLSPASLVAAIDRLSAESLRAMAKASSAAGRRDAAQRVLAVLHEISGK*
Ga0137419_1016277233300012925Vadose Zone SoilVRLGDAELTGPSLVATINGLDDQRLRSMANASATAGRRDAAKRVLAILHEVARR*
Ga0137419_1099965913300012925Vadose Zone SoilDSLTSAQLRAMAQASSGAGRRDAAQRVLEVVREVARR*
Ga0137416_1004429443300012927Vadose Zone SoilRIGDADLNPSSLVAAIDALTPARLRAMARASAATGRRDAAKRVLAVLHEVARK*
Ga0137416_1014568033300012927Vadose Zone SoilLSAESLRAMAKASSAAGRRDAAQRVLAVLHEIAGK*
Ga0137416_1125056523300012927Vadose Zone SoilGAAVRIADRDLSPSTLVAALDSLTPERLRAMAKASAAVGRRDAAKRVLAVLHEVAGR*
Ga0137407_1086776413300012930Vadose Zone SoilLMSAINGLDDERLRAMAKASAAAGRRDAAKRVLAILHEVARR*
Ga0164304_1177719723300012986SoilVAALESLSDGRLREMAAASARVGRRDAAQRVLAVLHEVLGK*
Ga0120179_108966013300013763PermafrostDGLTPDRLRARAKASAGAGRRDAAQRVLGVLREVMRG*
Ga0120170_105023323300014823PermafrostVTSTGPRLVATIKGLDDERLRAMAKASASAGLRDAAQRVLAVLREVALNK*
Ga0120104_108545723300014829PermafrostLSGRSLVATIAGLDDDRLRAMAKASASAGRRDAAARVLAVLREVAKH*
Ga0167657_101567223300015079Glacier Forefield SoilRLVATIKGLDDDRLREMAKASARAGLRDAAQRVLQVLREVVPAGRAQGA*
Ga0066667_1022139823300018433Grasslands SoilIDALQPAQLEAMARASATAGRRDAAQRVLGVLREVGNRK
Ga0066662_1294932913300018468Grasslands SoilHELDGDSLLRTIDGLEADRIRAMARASAAAGRHDAAQRVLAVLHEVVSR
Ga0066669_1048305823300018482Grasslands SoilVAAIDALQPAQLEAMARASATAGRRDAAQRVLGVLREVGNRK
Ga0066669_1182844513300018482Grasslands SoilLPAAQVEAMARASAAAGRRDAAERVLGVLREVVKTA
Ga0210399_1098808813300020581SoilAIDGLSAERLRAMAKASAGAGRRDAAQRVLAVLHEVAGK
Ga0215015_1029956713300021046SoilLSPAGLVAALDDLSAERLRAMAKASAGAGRRDAAARVLAVLHEAAGK
Ga0210409_1077451123300021559SoilGDKLVATLGGLDDERLSAMARASRAAGRHDAAQRVLAVLHEVAGR
Ga0210409_1119217023300021559SoilDLTGASLISAIESLDEERLTAMAKASSAAGRRDAAQRVLKVLHEVARK
Ga0210409_1143550413300021559SoilDSELSPTSLVATIDDLGEERLRAMAKASSGAGRHDAAQRVLAVLHEVVGK
Ga0126371_1154241723300021560Tropical Forest SoilEALVRCIEDLDANRLRAMAAASASNGRSDAARRVLAVLREVAAR
Ga0207653_1003689313300025885Corn, Switchgrass And Miscanthus RhizosphereRHGAAAQIADDDLTASTLVNTIDGLDADRLHAMAKASAASGRRDAAQRVLAVLHEVVRR
Ga0207646_1033220313300025922Corn, Switchgrass And Miscanthus RhizosphereDGLDADRLHAMAKASAASGRRDAAQRVLAVLHEVVRR
Ga0207646_1055071423300025922Corn, Switchgrass And Miscanthus RhizosphereLVETIDALTPDRLRAMAKASSAAGRRDAATRVLAVLHRVVGR
Ga0207646_1176315913300025922Corn, Switchgrass And Miscanthus RhizosphereIADGDLSPETLLAAIDGLTDEHLHALAKASSATGRRDAAQRVLAVLHRVAKK
Ga0209880_101198633300026271SoilLNGASLVAAIDALDDDRLRAMAKASASAGLRDAAQRVLAVLHEVARPPGERRAH
Ga0209235_123782123300026296Grasslands SoilSLLRTIDSLEADRIRAMAKASAAAGRHDAAQRVLAVLREVVSG
Ga0209265_123720223300026308SoilGERLRGMARASAAAGRRDAAQRVVAVLHEVAENQMDKS
Ga0209761_127696023300026313Grasslands SoilAAAMVSAGAALRIADDELEGDSLLRTIDSLEADRIRAMAKASAAAGRHDAAQRVLAVLREVASG
Ga0209154_112564113300026317SoilADDDLTGDSLVKAIEGLDSDRLRAMAKASAAAGRRDAAQRVLSVLREVARR
Ga0209131_106605333300026320Grasslands SoilTIDGLSDERLRAMAKASAATGRRDAAQRVMAVLHRVAGQ
Ga0209687_101970513300026322SoilIRAIESLDGDRLRAMAKASAAAGRRDAAKRVLAVLHEVANR
Ga0209472_115313823300026323SoilDALTGDSLLRALDSLDGERLRAMARASAAAGRRDAAQRVVAVLHEVAENQMDKS
Ga0209267_126478023300026331SoilSLLRALDGLDGERLRGMARASAAAGRRDAAQRVVAVLHEVAENQMDKS
Ga0209804_128397123300026335SoilADRDLTAESLVRTIESLDTDRLRGMAKASAAIGRRDAAQRVLRVLHEVVRR
Ga0209690_116116823300026524SoilIADHELDGDSLLRTIDGLEADRIRAMARASAAAGRHDAAQRVLAVLHEVVSR
Ga0209160_100056813300026532SoilDLSPASLLAAIDGLSAESLRAMAKASSAAGRRDAAQRVLAVLHEVAGK
Ga0209156_1039650923300026547SoilVAAGTAIRISDDAITGDSLLRALDGLDGERLRAMARASAAAGRRDAAQRVVAVLHEVAENQMDKS
Ga0209648_1045885113300026551Grasslands SoilLDDKRLRAMAAASAKAGLRDAAQRVLEVLHEVALA
Ga0209219_101050013300027565Forest SoilGLDGDRLREMAKASASIGRRDAAQRVLRVLREVSRS
Ga0209076_119454513300027643Vadose Zone SoilIDGLSGESLRAMAKASSAAGRRDAAQRVLAVLHEIAGK
Ga0209178_101735413300027725Agricultural SoilALSTLDADRLRAMARASAATGRGDAAQRVLGVLHEVAKR
Ga0209180_1046322513300027846Vadose Zone SoilSLTSAQLRAMAQASSATGRRDAAQRVLEVVREVARG
Ga0209701_1031132823300027862Vadose Zone SoilLVRTIESLDAAMLRAMAGASASVGRRDAAQRVLRVLHEVARK
Ga0209701_1063478623300027862Vadose Zone SoilKALSSEQLRAMAKASNTAGRRDAAQRVLRVLHEVARR
Ga0209168_1045726023300027986Surface SoilAGAAIRIADGELSGETLLQAIDSLEPERLRAMADASSAAGRRDAAERVLGVLREVARR
Ga0137415_1010516543300028536Vadose Zone SoilLAAIDGLSAERLREMAKASSAAGRRDAAQRVLAVLHRVVGK
Ga0137415_1013725533300028536Vadose Zone SoilVAAIDGLSGESLRAMAKASSAAGRRDAAQRVLAVLHEIAGK
Ga0137415_1037325023300028536Vadose Zone SoilDALTPDKLRAMAKASAASGRRDAAKRVLAVLHEVAHT
Ga0307305_1008018413300028807SoilDAELTGASLMATIAALDDERLRAMARASAAAGRRDAAKRVLAILHEVSRK
Ga0308309_1107738913300028906SoilTIKGLDGGRLREMARASASIGRRDAAQRVLLVLREVARS
Ga0222749_1048082213300029636SoilSLVAAIDGLSPERLRAMAKASAGIGRRDAAERVLQVLREVASKK
Ga0318528_1032906223300031561SoilAVRIADSELTADTLVRCIDGLTGDRLGAMATASAAIGRPDAAQRVLAVLHEVARS
Ga0307471_10093981213300032180Hardwood Forest SoilLVAALESLSDGRLREMAAASARVGRRDAAQRVLAVLHEVLGK
Ga0307471_10259272923300032180Hardwood Forest SoilESLDADRLRAMAKASAATGRRDAAQRVLAVLHGVAKR

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.