Metagenome / Metatranscriptome Family F069963

Basic Information
Family ID	F069963
Family Type	Metagenome / Metatranscriptome
Number of Sequences	123
Average Sequence Length	45 residues
Representative Sequence	WPAALQQLTGLLADGTWVPMATVHFAAMTAALLAGWMAVRAKG
Number of Associated Samples	113
Number of Associated Scaffolds	123

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	13.01 %
% of genes near scaffold ends (potentially truncated)	75.61 %
% of genes from short scaffolds (< 2000 bps)	86.18 %
Associated GOLD sequencing projects	110
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.56

Most Common Taxonomy
Group	Bacteria (94.309 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (12.195 % of family members)
Environment Ontology (ENVO)	Unclassified (26.829 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (34.959 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 53.52% β-sheet: 0.00% Coil/Unstructured: 46.48%
Feature Viewer

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Pfam ID	Name	% Frequency in 123 Family Scaffolds
PF04014	MazE_antitoxin	4.88
PF10012	DUF2255	4.07
PF00903	Glyoxalase	2.44
PF02826	2-Hacid_dh_C	2.44
PF04909	Amidohydro_2	2.44
PF01425	Amidase	2.44
PF13091	PLDc_2	1.63
PF13379	NMT1_2	1.63
PF13483	Lactamase_B_3	1.63
PF01850	PIN	1.63
PF00067	p450	1.63
PF08240	ADH_N	1.63
PF02604	PhdYeFM_antitox	0.81
PF05016	ParE_toxin	0.81
PF13489	Methyltransf_23	0.81
PF00583	Acetyltransf_1	0.81
PF05598	DUF772	0.81
PF05015	HigB-like_toxin	0.81
PF09084	NMT1	0.81
PF16868	NMT1_3	0.81
PF09907	HigB_toxin	0.81
PF02371	Transposase_20	0.81
PF13333	rve_2	0.81
PF02668	TauD	0.81
PF05988	DUF899	0.81
PF01381	HTH_3	0.81
PF13416	SBP_bac_8	0.81
PF00296	Bac_luciferase	0.81
PF04828	GFA	0.81
PF00999	Na_H_Exchanger	0.81
PF08241	Methyltransf_11	0.81
PF07690	MFS_1	0.81
PF04028	DUF374	0.81
PF10592	AIPR	0.81
PF13343	SBP_bac_6	0.81
PF13328	HD_4	0.81

COG ID	Name	Functional Category	% Frequency in 123 Family Scaffolds
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	2.44
COG2124	Cytochrome P450	Defense mechanisms [V]	1.63
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	0.81
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	0.81
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.81
COG2121	Uncharacterized conserved protein, lysophospholipid acyltransferase (LPLAT) superfamily	Function unknown [S]	0.81
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.81
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	0.81
COG2175	Taurine dioxygenase, alpha-ketoglutarate-dependent	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.81
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	0.81
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	0.81
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.81
COG3549	Plasmid maintenance system killer protein	Defense mechanisms [V]	0.81
COG3791	Uncharacterized conserved protein	Function unknown [S]	0.81
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	0.81
COG4312	Predicted dithiol-disulfide oxidoreductase, DUF899 family	General function prediction only [R]	0.81
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.81
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	94.31 %
Unclassified	root	N/A	5.69 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.31 %
Unclassified	root	N/A	5.69 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.31 %
Unclassified	root	N/A	5.69 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	24.39 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	17.89 %
Unclassified	root	N/A	5.69 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	4.88 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	4.07 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	1.63 %
Calditrichaeota	phylum	All Organisms → cellular organisms → Bacteria → Calditrichaeota	0.81 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	24.39 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	9.76 %
Unclassified	root	N/A	5.69 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	4.88 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2.44 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.63 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.63 %
bacterium MnTg02	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium MnTg02	0.81 %
Calditrichia	class	All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia	0.81 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.81 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	24.39 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	9.76 %
Unclassified	root	N/A	5.69 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	3.25 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2.44 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.63 %
Calditrichales	order	All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales	0.81 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.81 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	0.81 %
bacterium MnTg02	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium MnTg02	0.81 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	24.39 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	9.76 %
Unclassified	root	N/A	5.69 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3.25 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.44 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.63 %
Calditrichaceae	family	All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae	0.81 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	0.81 %
unclassified Burkholderiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales	0.81 %
bacterium MnTg02	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium MnTg02	0.81 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	24.39 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	9.76 %
Unclassified	root	N/A	5.69 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3.25 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	1.63 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.63 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.81 %
Burkholderiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	0.81 %
Caldithrix	genus	All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae → Caldithrix	0.81 %
bacterium MnTg02	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium MnTg02	0.81 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	24.39 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	9.76 %
Unclassified	root	N/A	5.69 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3.25 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1.63 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.63 %
unclassified Caldithrix	no rank	All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae → Caldithrix → unclassified Caldithrix	0.81 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.81 %
Burkholderiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	0.81 %
bacterium MnTg02	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium MnTg02	0.81 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	24.39 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	9.76 %
Unclassified	root	N/A	5.69 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3.25 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1.63 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.63 %
Caldithrix sp.	species	All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae → Caldithrix → unclassified Caldithrix → Caldithrix sp.	0.81 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.81 %
Burkholderiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	0.81 %
bacterium MnTg02	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium MnTg02	0.81 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000787\|JGI11643J11755_11330260	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	628	Open in IMG/M
3300000891\|JGI10214J12806_12139986	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300002223\|C687J26845_10242591	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	625	Open in IMG/M
3300004022\|Ga0055432_10118654	All Organisms → cellular organisms → Bacteria → Proteobacteria	711	Open in IMG/M
3300004145\|Ga0055489_10067347	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	990	Open in IMG/M
3300004463\|Ga0063356_106013446	Not Available	520	Open in IMG/M
3300004643\|Ga0062591_101157729	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	750	Open in IMG/M
3300005177\|Ga0066690_10787268	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	619	Open in IMG/M
3300005180\|Ga0066685_10741635	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	670	Open in IMG/M
3300005187\|Ga0066675_11371007	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	519	Open in IMG/M
3300005446\|Ga0066686_10238092	All Organisms → cellular organisms → Bacteria	1226	Open in IMG/M
3300005526\|Ga0073909_10248925	All Organisms → cellular organisms → Bacteria	789	Open in IMG/M
3300005558\|Ga0066698_10810783	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	605	Open in IMG/M
3300005575\|Ga0066702_10652412	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
3300005576\|Ga0066708_10619938	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	691	Open in IMG/M
3300005873\|Ga0075287_1007880	All Organisms → cellular organisms → Bacteria	1263	Open in IMG/M
3300006049\|Ga0075417_10003446	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	5022	Open in IMG/M
3300006049\|Ga0075417_10719450	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	514	Open in IMG/M
3300006755\|Ga0079222_11820151	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	590	Open in IMG/M
3300006796\|Ga0066665_10489854	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1009	Open in IMG/M
3300006797\|Ga0066659_10146449	All Organisms → cellular organisms → Bacteria	1674	Open in IMG/M
3300006806\|Ga0079220_12048937	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	511	Open in IMG/M
3300006844\|Ga0075428_100063003	All Organisms → cellular organisms → Bacteria	4059	Open in IMG/M
3300006845\|Ga0075421_100210945	All Organisms → cellular organisms → Bacteria	2398	Open in IMG/M
3300006845\|Ga0075421_102190150	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	584	Open in IMG/M
3300006845\|Ga0075421_102615365	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	523	Open in IMG/M
3300006847\|Ga0075431_100073569	All Organisms → cellular organisms → Bacteria	3525	Open in IMG/M
3300006854\|Ga0075425_100074868	All Organisms → cellular organisms → Bacteria	3819	Open in IMG/M
3300006854\|Ga0075425_100199003	All Organisms → cellular organisms → Bacteria	2302	Open in IMG/M
3300006865\|Ga0073934_10057137	All Organisms → cellular organisms → Bacteria	3305	Open in IMG/M
3300006876\|Ga0079217_10223753	All Organisms → cellular organisms → Bacteria	982	Open in IMG/M
3300006880\|Ga0075429_100957793	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	748	Open in IMG/M
3300006904\|Ga0075424_100884869	All Organisms → cellular organisms → Bacteria → Proteobacteria	953	Open in IMG/M
3300007076\|Ga0075435_100845185	All Organisms → cellular organisms → Bacteria	797	Open in IMG/M
3300007255\|Ga0099791_10446512	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	625	Open in IMG/M
3300009078\|Ga0105106_11343218	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300009094\|Ga0111539_13021042	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300009131\|Ga0115027_11558318	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	544	Open in IMG/M
3300009153\|Ga0105094_10333905	All Organisms → cellular organisms → Bacteria	875	Open in IMG/M
3300009162\|Ga0075423_10683806	All Organisms → cellular organisms → Bacteria	1083	Open in IMG/M
3300009162\|Ga0075423_12263085	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300009609\|Ga0105347_1111200	All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae → Caldithrix → unclassified Caldithrix → Caldithrix sp.	1041	Open in IMG/M
3300009691\|Ga0114944_1255301	Not Available	712	Open in IMG/M
3300010040\|Ga0126308_11349583	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300010322\|Ga0134084_10413536	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	529	Open in IMG/M
3300010371\|Ga0134125_12702306	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	540	Open in IMG/M
3300010397\|Ga0134124_11086426	All Organisms → cellular organisms → Bacteria	816	Open in IMG/M
3300010399\|Ga0134127_10304751	All Organisms → cellular organisms → Bacteria	1536	Open in IMG/M
3300010400\|Ga0134122_10669028	All Organisms → cellular organisms → Bacteria	970	Open in IMG/M
3300010401\|Ga0134121_10260771	Not Available	1520	Open in IMG/M
3300011119\|Ga0105246_11804968	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	584	Open in IMG/M
3300011434\|Ga0137464_1083888	All Organisms → cellular organisms → Bacteria	925	Open in IMG/M
3300012134\|Ga0137330_1034817	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	652	Open in IMG/M
3300012179\|Ga0137334_1127310	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	576	Open in IMG/M
3300012204\|Ga0137374_10076827	All Organisms → cellular organisms → Bacteria	3257	Open in IMG/M
3300012351\|Ga0137386_11088189	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	565	Open in IMG/M
3300012469\|Ga0150984_105214125	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	510	Open in IMG/M
3300012486\|Ga0157331_1019063	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300012486\|Ga0157331_1020015	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	588	Open in IMG/M
3300012487\|Ga0157321_1011402	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300012498\|Ga0157345_1029672	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	606	Open in IMG/M
3300012503\|Ga0157313_1008867	All Organisms → cellular organisms → Bacteria	820	Open in IMG/M
3300012511\|Ga0157332_1083101	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300012582\|Ga0137358_10236745	All Organisms → cellular organisms → Bacteria	1243	Open in IMG/M
3300012582\|Ga0137358_10396505	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	934	Open in IMG/M
3300012903\|Ga0157289_10045211	All Organisms → cellular organisms → Bacteria	1095	Open in IMG/M
3300012931\|Ga0153915_10295225	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1808	Open in IMG/M
3300012931\|Ga0153915_11130396	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	914	Open in IMG/M
3300012961\|Ga0164302_10123272	All Organisms → cellular organisms → Bacteria → Proteobacteria	1478	Open in IMG/M
3300012972\|Ga0134077_10301604	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	673	Open in IMG/M
3300013306\|Ga0163162_10067323	All Organisms → cellular organisms → Bacteria	3632	Open in IMG/M
3300014259\|Ga0075311_1164230	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	516	Open in IMG/M
3300015254\|Ga0180089_1101125	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	598	Open in IMG/M
3300015372\|Ga0132256_100276892	All Organisms → cellular organisms → Bacteria	1755	Open in IMG/M
3300015373\|Ga0132257_100165152	All Organisms → cellular organisms → Bacteria	2603	Open in IMG/M
3300016341\|Ga0182035_10840587	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	807	Open in IMG/M
3300017994\|Ga0187822_10269145	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	591	Open in IMG/M
3300018072\|Ga0184635_10014380	All Organisms → cellular organisms → Bacteria	2823	Open in IMG/M
3300018422\|Ga0190265_13292160	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	539	Open in IMG/M
3300018481\|Ga0190271_12387859	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	632	Open in IMG/M
3300019248\|Ga0180117_1293023	Not Available	539	Open in IMG/M
3300019377\|Ga0190264_11600170	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300020003\|Ga0193739_1006540	All Organisms → cellular organisms → Bacteria	3122	Open in IMG/M
3300020060\|Ga0193717_1196919	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	547	Open in IMG/M
3300020186\|Ga0163153_10121286	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium MnTg02	1496	Open in IMG/M
3300021051\|Ga0206224_1056577	Not Available	535	Open in IMG/M
3300021090\|Ga0210377_10402291	All Organisms → cellular organisms → Bacteria	813	Open in IMG/M
3300021418\|Ga0193695_1126443	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	531	Open in IMG/M
3300022756\|Ga0222622_10853001	All Organisms → cellular organisms → Bacteria → Proteobacteria	667	Open in IMG/M
3300025155\|Ga0209320_10386880	Not Available	565	Open in IMG/M
3300025164\|Ga0209521_10227365	All Organisms → cellular organisms → Bacteria	1102	Open in IMG/M
3300025319\|Ga0209520_10041951	All Organisms → cellular organisms → Bacteria → Proteobacteria	2892	Open in IMG/M
3300025791\|Ga0210115_1010549	All Organisms → cellular organisms → Bacteria → Proteobacteria	2193	Open in IMG/M
3300025791\|Ga0210115_1030352	All Organisms → cellular organisms → Bacteria	1195	Open in IMG/M
3300025910\|Ga0207684_10652406	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	897	Open in IMG/M
3300025919\|Ga0207657_10762180	All Organisms → cellular organisms → Bacteria	749	Open in IMG/M
3300025922\|Ga0207646_11500006	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	584	Open in IMG/M
3300025960\|Ga0207651_11541983	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300025961\|Ga0207712_10050030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	2916	Open in IMG/M
3300025971\|Ga0210102_1048780	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	915	Open in IMG/M
3300026088\|Ga0207641_11440193	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	690	Open in IMG/M
3300026088\|Ga0207641_11659390	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300026328\|Ga0209802_1014791	All Organisms → cellular organisms → Bacteria	4446	Open in IMG/M
3300026540\|Ga0209376_1129173	All Organisms → cellular organisms → Bacteria	1241	Open in IMG/M
3300026552\|Ga0209577_10515328	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	786	Open in IMG/M
3300027543\|Ga0209999_1113912	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	529	Open in IMG/M
3300027787\|Ga0209074_10124622	All Organisms → cellular organisms → Bacteria	900	Open in IMG/M
3300027821\|Ga0209811_10046947	All Organisms → cellular organisms → Bacteria → Proteobacteria	1469	Open in IMG/M
3300027877\|Ga0209293_10074325	Not Available	1472	Open in IMG/M
3300028420\|Ga0210366_10150208	All Organisms → cellular organisms → Bacteria	855	Open in IMG/M
3300028587\|Ga0247828_10664276	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	644	Open in IMG/M
3300028802\|Ga0307503_10582065	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300028809\|Ga0247824_11050545	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	518	Open in IMG/M
3300031720\|Ga0307469_12320094	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	523	Open in IMG/M
3300031740\|Ga0307468_101706134	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	593	Open in IMG/M
3300031847\|Ga0310907_10747996	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	544	Open in IMG/M
3300031908\|Ga0310900_10696051	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	813	Open in IMG/M
3300031949\|Ga0214473_11958587	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	573	Open in IMG/M
3300032163\|Ga0315281_12289144	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	509	Open in IMG/M
3300032205\|Ga0307472_100437095	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1107	Open in IMG/M
3300032954\|Ga0335083_10904085	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300033433\|Ga0326726_10096221	All Organisms → cellular organisms → Bacteria	2643	Open in IMG/M
3300033487\|Ga0316630_11808983	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	558	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	75.61%
Host-Associated	Host-Associated	24.39%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	54.47%
Plants	Host-Associated → Plants	24.39%
Aquatic	Environmental → Aquatic	21.14%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	52.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere	17.07%
Freshwater	Environmental → Aquatic → Freshwater	8.94%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.32%
Sediment	Environmental → Aquatic → Sediment	5.69%
Marine	Environmental → Aquatic → Marine	4.88%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.63%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.81%
Peat	Environmental → Terrestrial → Peat	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	47.15%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.82%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.69%
Sediment	Environmental → Aquatic → Freshwater → Sediment	4.88%
Wetlands	Environmental → Aquatic → Marine → Wetlands	4.06%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.25%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.25%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.44%
Loam	Environmental → Terrestrial → Soil → Loam	2.44%
Lake	Environmental → Aquatic → Freshwater → Lake	1.63%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.81%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.81%
Sediment	Environmental → Aquatic → Thermal Springs → Sediment	0.81%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.81%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.39%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.82%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	11.38%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.69%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	4.88%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	4.06%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.06%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.25%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.25%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.25%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.25%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.63%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.63%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	0.81%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.81%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.81%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	0.81%
Unclassified	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified	0.81%
Unclassified	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified	0.81%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.81%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.81%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.81%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	12.20%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	11.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.76%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	4.06%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	4.06%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.06%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.06%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.25%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.25%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.44%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.44%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	2.44%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.63%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	1.63%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.63%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	1.63%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.63%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.63%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.63%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.63%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.63%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.63%
Freshwater Microbial Mat	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat	0.81%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.81%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.81%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	0.81%
Thermal Springs	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs	0.81%
Hot Spring Sediment	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment	0.81%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.81%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.81%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.81%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.81%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.81%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	0.81%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.81%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.81%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.81%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.81%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300002223	Soil microbial communities from Rifle, Colorado - Rifle CSP2_plank lowO2_1.2	Environmental	Open in IMG/M
3300004022	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D1	Environmental	Open in IMG/M
3300004145	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqB_D2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005873	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_301	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006865	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG	Environmental	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009078	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009131	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1	Environmental	Open in IMG/M
3300009153	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009609	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890	Environmental	Open in IMG/M
3300009691	Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP2	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011434	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT814_2	Environmental	Open in IMG/M
3300012134	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT142_2	Environmental	Open in IMG/M
3300012179	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT262_2	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012486	Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.120510	Environmental	Open in IMG/M
3300012487	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.4.old.130510	Host-Associated	Open in IMG/M
3300012498	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.3.yng.090410	Host-Associated	Open in IMG/M
3300012503	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.5.old.080610_R	Host-Associated	Open in IMG/M
3300012511	Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.080610_10	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012903	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014259	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D1	Environmental	Open in IMG/M
3300015254	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT860_16_10D	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019248	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_2_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300020003	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a2	Environmental	Open in IMG/M
3300020060	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c2	Environmental	Open in IMG/M
3300020186	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.MP6.IB-1	Environmental	Open in IMG/M
3300021051	Subsurface sediment microbial communities from Mancos shale, Colorado, United States - Mancos A1	Environmental	Open in IMG/M
3300021090	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redo	Environmental	Open in IMG/M
3300021418	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s2	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025155	Soil microbial communities from Rifle, Colorado, USA - sediment 13ft 4	Environmental	Open in IMG/M
3300025164	Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 4	Environmental	Open in IMG/M
3300025319	Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 1	Environmental	Open in IMG/M
3300025791	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025971	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqC_D2 (SPAdes)	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027543	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 AM (SPAdes)	Host-Associated	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027877	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300028420	Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States ? S.641 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300032163	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033487	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D6_A	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.56
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.56
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F069963

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI11643J11755_113302602	3300000787	Soil	LADGTWVPMAAVHGAAVIGALVAAWMAARAKGQN*
JGI10214J12806_121399861	3300000891	Soil	PAALQQLTGLLADGTWLPMATVAFAAVTAALLAAWMAAKAKD*
C687J26845_102425911	3300002223	Soil	PALLSDGTWVPMAAVHFAAVTGALLAGWMAVRAKD*
Ga0055432_101186541	3300004022	Natural And Restored Wetlands	SGAVVFSQFFWPAALQQLTGLLADGTWVPMATVHFAAMSAALLAGWMAVRAKD*
Ga0055489_100673472	3300004145	Natural And Restored Wetlands	ALQQLTGLLADGTWVPMATVNFFAVTGALFAGWIAVRAES*
Ga0063356_1060134461	3300004463	Arabidopsis Thaliana Rhizosphere	LQEITGLLADGTWVPMAAVHFAAVAVALLAGWVAARSDI*
Ga0062591_1011577291	3300004643	Soil	PAALQQLTALLANGSWVPMATVHLAAMIAALFAGWIAVRTER*
Ga0066690_107872681	3300005177	Soil	GAVVFSQFFWPAAQQQLTGLLANGTWVPMATVRFAAVATALHAGCMAVPAKG*
Ga0066685_107416351	3300005180	Soil	RDDNRIRCAAVFSQFLWPAALQQLTRLLADGTWVPMATVHFAAMTAALLAGWMAVRARG*
Ga0066675_113710072	3300005187	Soil	VFSQFFWPAALQQLTGLLADGTWVPRATVHFAAVTAALLAGWMAVRARG*
Ga0066686_102380921	3300005446	Soil	VFSQFLWPAALQQLTRLLADGTWVPMATVHFAAMTAALLAGWMAVRARG*
Ga0073909_102489252	3300005526	Surface Soil	MRSNTAEQLTGLLADGTWVPMATVHFAAVTAALLAGWMAARASD*
Ga0066698_108107831	3300005558	Soil	QLTGLLANGTWVPMATVRFAAVATALHAGCMAVPAKG*
Ga0066702_106524122	3300005575	Soil	ALQQLTGLLADGTWVPMAAVHFAAVTVALLTGWMAVRAKD*
Ga0066708_106199382	3300005576	Soil	NRIRCAAVFSQFLWPAALQQLTRLLADGTWVPMATVHFAAMTAALLAGWMAVRARG*
Ga0075287_10078801	3300005873	Rice Paddy Soil	WPAALQQLTGWLADGTWVPMAAVHFSAVTGALLAGWMAVRAKD*
Ga0075417_100034466	3300006049	Populus Rhizosphere	VSVVAEADHALGFWASALQQFTGLLPDGTWVPMATVHFVAMTGVLLAGCMAVRAKG*
Ga0075417_107194501	3300006049	Populus Rhizosphere	VVFSQLFWPAALQQLTGLLADGTWVPMAAVHFAAVTAALLAGWVAVRAKG*
Ga0079222_118201511	3300006755	Agricultural Soil	QLTGLLADGTWVPMASVHFAAVTVALLAGWMAARAKN*
Ga0066665_104898542	3300006796	Soil	LGELLSQFLWPAALQQLTGFLANGTWVPMATVHFAAMTAALLAGWMAVRARG*
Ga0066659_101464495	3300006797	Soil	MSTSNWVALQQLTGLLADVLGSRWRPVHFAVITTALLAGWIAVWAKG*
Ga0079220_120489372	3300006806	Agricultural Soil	TGLLSDGTWMPMAAVHVASVVGALFAGWMAARGKS*
Ga0075428_1000630035	3300006844	Populus Rhizosphere	CPRFFWASALQQFTGLLPDGTWVPMATVHFTAMTGAPLAGWMAVRAKG*
Ga0075421_1002109452	3300006845	Populus Rhizosphere	MPSVLLVSALQQLTGLLTDGTWMPMATVHFAAMTGVLLAGCMAVRAKG*
Ga0075421_1021901501	3300006845	Populus Rhizosphere	AAGAVVFSQLFWPAALQQLTALLANGSWVPMATVHFTAMTIALLAGWMAVRAER*
Ga0075421_1026153651	3300006845	Populus Rhizosphere	MPSVLLGAALQQFTGLLPDGTWVPMATVHFTAMTGAPLAGWMAVRAKG*
Ga0075431_1000735696	3300006847	Populus Rhizosphere	MAEADHALGFWASALQQFTGLLPDGTWVPMATVHFTAMTGAPLAGWMAVRAKG*
Ga0075425_1000748686	3300006854	Populus Rhizosphere	MPSVLLVSALQQLTGLLPDGTWVPMATVHFAAMTGVLLAGCMAVRAKG*
Ga0075425_1001990031	3300006854	Populus Rhizosphere	AALQELTGLLADGTWVPMAAVQFAAVTIALLAGWVAARADI*
Ga0073934_100571372	3300006865	Hot Spring Sediment	VALQQLTGLLADGTWVPMATVHFAAVTAALLAAWIAVRAND*
Ga0079217_102237532	3300006876	Agricultural Soil	VVFSQFFWPAALQQLTGLLADGTWVPMASVHFAAVTGALLAAWMAAPAKR*
Ga0075429_1009577932	3300006880	Populus Rhizosphere	VSVVAEADHALFFWASALQQFTGLLPDGTWVPMATVHFVAMTGVLLAGCMAVRAKG*
Ga0075424_1008848692	3300006904	Populus Rhizosphere	MRSNTAEQLTGLLADGTWVAMATVHFAAVTAALLAGWMVARASD*
Ga0075435_1008451852	3300007076	Populus Rhizosphere	MAEADHALFFWASALQQFTGLLPDGTWVPMATVHFTAMTGAPLAGWMAVRAKG*
Ga0099791_104465122	3300007255	Vadose Zone Soil	SQFFWPAALQQLTGLLADGTWVPMATVHFAAMTAALLAGWMAVRAKG*
Ga0105106_113432182	3300009078	Freshwater Sediment	ASGAVVFSQFFWPAALQQLTGLLADGTWVPMAAVHFFAVTGALLAGWMALRAKT*
Ga0111539_130210421	3300009094	Populus Rhizosphere	LLPDGTWVPMATVHFVAMTGVLLAGCMAVRLERLKPTR*
Ga0115027_115583182	3300009131	Wetland	MRSNTAEQLIGLLADGTWVPMAAVHFAAVTVALLTGWMAVRAKD*
Ga0105094_103339051	3300009153	Freshwater Sediment	QRSGLLAYGTWVPMATVHFAAVTGALLAGWMAVRAKT*
Ga0075423_106838063	3300009162	Populus Rhizosphere	FSQLFWPAALQELTGLLADGTWVPMAAVQFAAVTIALLAGWVAARADI*
Ga0075423_122630852	3300009162	Populus Rhizosphere	MPSVLLVSALQQLTGLLPDGTWVPMATVHFVAMTGVLLAGCMAVRA
Ga0105347_11112001	3300009609	Soil	VFSQCFWPAALEQLTGLLADGTWVPMAAVHFVAVTGALLAG*
Ga0114944_12553012	3300009691	Thermal Springs	GLLADGTWVPMAAVHFAAVTAALLAAWMAVQAKG*
Ga0126308_113495831	3300010040	Serpentine Soil	LTGLLADGTWVPMATVAFAAVTAALLAAWMAAQAKD*
Ga0134084_104135361	3300010322	Grasslands Soil	MALQQLTGLLADGTWVPMAAVHFAAVTVALLTGWMAVRAKD*
Ga0134125_127023062	3300010371	Terrestrial Soil	GAVVFSQFFWPSALQELTGVLADGTWVPMAAVHFAAVTVALLAGWMAARTTD*
Ga0134124_110864262	3300010397	Terrestrial Soil	FWPAALQELTGLLADGTWVPMAAVQFAAVTVALLAGWVAARADI*
Ga0134127_103047513	3300010399	Terrestrial Soil	AALQQLTGLLADGTWVPMASVPFAAVTAALLAAWLAARAET*
Ga0134122_106690281	3300010400	Terrestrial Soil	MRSNTAEQLTGLLADGTWVAMATVHFAAVTAALLAGWMAARASD*
Ga0134121_102607712	3300010401	Terrestrial Soil	AALQELTGLLADGTWVPMAAVQFAAVTIALLAGWVAARGDI*
Ga0105246_118049682	3300011119	Miscanthus Rhizosphere	SQLFWPAALQQLTGMLADGTWVPMATVHFAAVTAALLAGLMAARAKDKWF*
Ga0137464_10838881	3300011434	Soil	VVVSQFFWTAALQQLTGLVADGTWVPMAAVHFAAMTAALLAGWMAV
Ga0137330_10348171	3300012134	Soil	LQQLTGLLADGTWVPMAAVHFAAVTGALLAGWMALRAER*
Ga0137334_11273101	3300012179	Soil	LTALLADGTWVPMATVHFVAMTGALLAGWMAVRAKG*
Ga0137374_100768271	3300012204	Vadose Zone Soil	VVFSQFFWPAALQQLTGLLADGTSVPMATVHFAAMTAALLAGCMAVRAKG*
Ga0137386_110881891	3300012351	Vadose Zone Soil	VVFSQFFWPAALQQLTGLLADGTWVPMATVHFTAMTAA
Ga0150984_1052141251	3300012469	Avena Fatua Rhizosphere	FSQFFWPAALQQLTGVLADGSWVPMAAVHFAAVTVALLAGWMAARAKS*
Ga0157331_10190632	3300012486	Soil	MRSNTAEQLTGLLADGTWVAMATVHFAAVTAALLAGWMAVRASD*
Ga0157331_10200152	3300012486	Soil	WPSALQELTGVLADGTWVPMAAVHFTAVTVALLAGWMAARTTD*
Ga0157321_10114021	3300012487	Arabidopsis Rhizosphere	GAVVFSQLFWPAALQQLTGLLADGSWVPMASVHFAAVTAALLAAWLAVRAET*
Ga0157345_10296722	3300012498	Arabidopsis Rhizosphere	MRSNTAEQLTGLLADGTWVPMATVHFAAVTAALLAGWMAVRAKD*
Ga0157313_10088672	3300012503	Arabidopsis Rhizosphere	MRSNTAEQLTGLLADGTWVPMAAVHFAAVTVALLTGWMAVRAKD*
Ga0157332_10831012	3300012511	Soil	SMRSNTAEQLTGLLADGTWVPMATVHFAAVTAALLAGWMAVRASD*
Ga0137358_102367451	3300012582	Vadose Zone Soil	AVVFSQFFWPAALQQLTGMLADGTWVAMATVHFAAMTAALLAGWMAVRAKR*
Ga0137358_103965053	3300012582	Vadose Zone Soil	FFWPAALQQLTGMLADGTWVAMATVHFAAMTAALIAGWMAVRAKT*
Ga0157289_100452111	3300012903	Soil	QLFWPAALQELTGLLADGTWVPMAAVQFAAVTIALLAGWVAARADI*
Ga0153915_102952252	3300012931	Freshwater Wetlands	VALQQLAGLRADGTWVPMATVHFAAVIAALLAAWMAVRAKSQTPAE
Ga0153915_111303962	3300012931	Freshwater Wetlands	VVFSQFFWPAALQQLTGLLADGTWVPMAMVHFIAVTAALLAGWMAVRAET*
Ga0164302_101232721	3300012961	Soil	MRSNTAEQLTGLLADGTGVPMATVHLAAVTAALLAAWMAVR
Ga0134077_103016041	3300012972	Grasslands Soil	GFLANGTWVPMATVHFAAMTAALLAGWMAVRARG*
Ga0163162_100673234	3300013306	Switchgrass Rhizosphere	FWPAALQQLTALLANGSWVPMATVHLVAMIAALLAGWMAVRAEH*
Ga0075311_11642301	3300014259	Natural And Restored Wetlands	LTGLLADGTWVPMATVHFIAVTAALLAGWMAVRAKG*
Ga0180089_11011251	3300015254	Soil	LFWPAALQQLTGLLADGTWVPMAAVHCAAVTGALLAAWMAARAEG*
Ga0132256_1002768921	3300015372	Arabidopsis Rhizosphere	TGLLADGTWVPMAAVHFAAVTVALFTGWMAVRAEG*
Ga0132257_1001651522	3300015373	Arabidopsis Rhizosphere	MRSNTAEQLTGLLADGTWVPMAAVHFAAVTVALLTGWMAVRASD*
Ga0182035_108405872	3300016341	Soil	TGMLADNSWVPMAAVHFAAVTGALLAAWVAARAKG
Ga0187822_102691451	3300017994	Freshwater Sediment	VALQQLAGLRADGTWVPMATVHFAAVIAALLAAWMAARADD
Ga0184635_100143805	3300018072	Groundwater Sediment	LPLSLGRSDAQFFWPAALQQLTGLLADGTWVPMATVHFGAMTAALLAGWMAVRAKG
Ga0190265_132921601	3300018422	Soil	AVVFSQFFWPAALQQLTGLLADGTWVPMATVHFAAVTGALLAAWMAMQAKT
Ga0190271_123878591	3300018481	Soil	LQQLTALLANGSWVPMATVHVAAMIAALFAGWIAVRAER
Ga0180117_12930232	3300019248	Groundwater Sediment	VFSQFFWPAALQQLTGLLADGTWVPMAAVHFAVVTAALLAGWMAARAET
Ga0190264_116001703	3300019377	Soil	ALQQLTGLLADGTWVPMATVHFAAVTAALLAAWMAMQAKT
Ga0193739_10065402	3300020003	Soil	VNSPPVAASAQFFWPAALQQLTGLLADGTWVPMATVHFAAMTGALLAGWMAARAKG
Ga0193717_11969191	3300020060	Soil	FWPAALQQLTGLLADGSWVPMATVHFAAVTAALLAGWMAVRAKG
Ga0163153_101212861	3300020186	Freshwater Microbial Mat	QQLTGLLADGTWVPMAAVQFAAVTGALLAGWMAVRAED
Ga0206224_10565771	3300021051	Deep Subsurface Sediment	QLTALLADGSWVPMAAVQFAAVTGALLAGWMAARDEG
Ga0210377_104022911	3300021090	Groundwater Sediment	FFWPAALQQLTGLLADGTWVPMATVHFAAVTAALLAGWMAARGKG
Ga0193695_11264431	3300021418	Soil	WPAALQQLTGLLADGTWVPMATVHFAAMTAALLAGWMAVRAKG
Ga0222622_108530012	3300022756	Groundwater Sediment	LLTGLLADATWAPMATVHFTAMTAALLAGWMEVRTKG
Ga0209320_103868802	3300025155	Soil	PSALQQLTGLLADGTWVPMATVHFTAMTAALLAAWMAVRAKD
Ga0209521_102273654	3300025164	Soil	PAALQQLTGLLADGTWVPMAAVHFAAVTGALLAAWMAVRTET
Ga0209520_100419513	3300025319	Soil	AALQQLTGLLADGTWVPMAAVHFAAVTGALLAGWMAVRAKD
Ga0210115_10105493	3300025791	Natural And Restored Wetlands	LTGWLADGTWVPMAAVHFSAVTGALLAGWMAVRVER
Ga0210115_10303521	3300025791	Natural And Restored Wetlands	LTGWLADGTWVPMAAVHFSAVTGALLAGWMAVRAKD
Ga0207684_106524062	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	VFSQFFWPAALQHLTGLLADGTWVPMATVHFAAMTAPLLAGWMAVRAKGSRLKI
Ga0207657_107621802	3300025919	Corn Rhizosphere	AALQELTGLLADGTWVPMAAVQFAAVTIALLAGWVAARADI
Ga0207646_115000061	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	VVFSQFFWPAALQQLTGLLADGTWVPMATVHFAAMTAPLLAGWMAVRAKG
Ga0207651_115419832	3300025960	Switchgrass Rhizosphere	VVFSQLFWPAALQELTGLLADGTWVPMAAVQFAAVTIALLAGWVAARADI
Ga0207712_100500304	3300025961	Switchgrass Rhizosphere	VFSQLFWPAALQQLTGLLADGTWVPMASVHFAAVTAALLAAWLAARAET
Ga0210102_10487801	3300025971	Natural And Restored Wetlands	ALQQLTGVLADGSWVPMVAVHFAAVTGALLAGWVAARDET
Ga0207641_114401931	3300026088	Switchgrass Rhizosphere	TGVLADGTWVPMAAVHFAAVTVALLAGWMAARTTD
Ga0207641_116593901	3300026088	Switchgrass Rhizosphere	KWTPDSSYQYSMRSNTAEQLTGLLADGTWVPMAAVHFAAVTVALLTGWMAVRASD
Ga0209802_10147914	3300026328	Soil	VFSQFLWPAALQQLTRLLADGTWVPMATVHFAAMTAALLAGWMAVRARG
Ga0209376_11291733	3300026540	Soil	RDDNRIRCAAVFSQFLWPAALQQLTRLLADGTWVPMATVHFAAMTAALLAGWMAVRARG
Ga0209577_105153281	3300026552	Soil	AQQQLTGLLANGTWVPMATVRFAAVATALHAGCMAVPAKG
Ga0209999_11139121	3300027543	Arabidopsis Thaliana Rhizosphere	PAALQQLTGLLADGTWVPMATVHFAAVSAALLAGWVAVRAKG
Ga0209074_101246222	3300027787	Agricultural Soil	WPAALQELTGLLADGTWVPMAAVQFAAVTVALLAGWVAARADI
Ga0209811_100469472	3300027821	Surface Soil	MRSNTAEQLTGLLADGTGVPMATVHLAAVTAALLAAWLAVRASD
Ga0209293_100743253	3300027877	Wetland	QLTGVLADGTWVPMASVHFAAVTGALLAGWMAARAED
Ga0210366_101502082	3300028420	Estuarine	FWPSALQQLTGLLADGTWVPMATVNFIAVTGALIAGWMAVRAER
Ga0247828_106642761	3300028587	Soil	AAGAVVFSQLFWPAALQQLTALLANGSWVPMATVHLAAMIAALFAGWIAVRAER
Ga0307503_105820651	3300028802	Soil	PAALQQLTGLLADGTWVPMAAVHFAAVTAALLAGWMAARAET
Ga0247824_110505451	3300028809	Soil	TGLLADGTWVPMASVHFAAVTGALLAAWMAAPATASLFKKN
Ga0307469_123200942	3300031720	Hardwood Forest Soil	RAVVFSQFFWPAALQHLTGLLADGTWVPMATVHFAAMTAPLLAGWMAVRAKG
Ga0307468_1017061341	3300031740	Hardwood Forest Soil	AALQQVTGLLADGTWVPMAAVHFAAVTAALLAAWLAARAET
Ga0310907_107479962	3300031847	Soil	QELTGVLADGTWVPMAAVHFAAVTVALLVGWMAARTTD
Ga0310900_106960511	3300031908	Soil	SQLFWPAALQQLTALLANGSWVPMATVHLAAMIAALFAGWIAVRAER
Ga0214473_119585871	3300031949	Soil	VVFSQFFWPAALQQLTGLLADGTWVPMAAVHFAAVAGALLAAWMAVRAKD
Ga0315281_122891441	3300032163	Sediment	VVFSQFFWPAALQQLTGLLADGTWVPMAAVQFAAVTGALLAAWMAARDKNF
Ga0307472_1004370952	3300032205	Hardwood Forest Soil	VVFSQFFWPTALQQLTGLLADGTWVPMATVHFAAMTAALLAGWMAVRAKD
Ga0335083_109040851	3300032954	Soil	ALQQLTALLADGTWVPMATVHFAAMTAALLAGWMAVRAER
Ga0326726_100962214	3300033433	Peat Soil	VAFSQFLAVCVQQRTGLLAEGTWMPMAAVHLGAMTAALLAGWMAARAKTCSEAALVA
Ga0316630_118089832	3300033487	Soil	SQFFWPAALQQLTGLLADGTWVPMAAVHFAAVTGALLAGWMALRAER

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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