Metagenome / Metatranscriptome Family F070283

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F070283
Family Type	Metagenome / Metatranscriptome
Number of Sequences	123
Average Sequence Length	76 residues
Representative Sequence	MTGRPSVGLADLEEVSRRIAAGQFSNRPGCTLEVSTYVWNRNSFEAQHGFEDACQAHGIRFAVIERIGGIEWACP
Number of Associated Samples	94
Number of Associated Scaffolds	123

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	81.30 %
% of genes near scaffold ends (potentially truncated)	25.20 %
% of genes from short scaffolds (< 2000 bps)	77.24 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.73

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (18.699 % of family members)
Environment Ontology (ENVO)	Unclassified (24.390 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (39.024 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 27.18% β-sheet: 13.59% Coil/Unstructured: 59.22%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.73
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.73
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SCOP family	SCOP domain	Representative PDB	TM-score
c.1.8.1: Amylase, catalytic domain	d1blia2	1bli	0.64502
c.1.27.1: (2r)-phospho-3-sulfolactate synthase ComA	d1qwga_	1qwg	0.625
c.72.1.2: Thiamin biosynthesis kinases	d1ub0a_	1ub0	0.59389
c.1.8.1: Amylase, catalytic domain	d1x1na1	1x1n	0.58513
c.1.8.0: automated matches	d4lypa1	4lyp	0.58381

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 123 Family Scaffolds
PF12867	DinB_2	30.89
PF13298	LigD_N	17.07
PF06724	DUF1206	15.45
PF16861	Carbam_trans_C	2.44
PF12704	MacB_PCD	2.44
PF00873	ACR_tran	1.63
PF08450	SGL	1.63
PF02687	FtsX	0.81
PF12833	HTH_18	0.81
PF16822	ALGX	0.81
PF00196	GerE	0.81
PF00034	Cytochrom_C	0.81
PF02321	OEP	0.81
PF16261	DUF4915	0.81
PF16870	OxoGdeHyase_C	0.81
PF00144	Beta-lactamase	0.81
PF12088	DUF3565	0.81
PF14014	DUF4230	0.81

COG ID	Name	Functional Category	% Frequency in 123 Family Scaffolds
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	1.63
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	1.63
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	1.63
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.81
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.81
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	65.85 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	2.44 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.81 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	65.85 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	2.44 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.81 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	65.85 %
Candidatus Eisenbacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria	2.44 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.81 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	65.85 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	2.44 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.81 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Gemmatimonadales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales	58.54 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	7.32 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	2.44 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.81 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	58.54 %
Gemmatirosa	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa	6.50 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	2.44 %
unclassified Gemmatimonadaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae	0.81 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.81 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	58.54 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	6.50 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	2.44 %
Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	0.81 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.81 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090015\|GPICI_9007020	All Organisms → cellular organisms → Bacteria	2608	Open in IMG/M
2228664021\|ICCgaii200_c0986277	All Organisms → cellular organisms → Bacteria	3857	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0881696	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1201	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0881763	All Organisms → cellular organisms → Bacteria	5053	Open in IMG/M
3300000956\|JGI10216J12902_116305757	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300001305\|C688J14111_10031452	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1581	Open in IMG/M
3300003267\|soilL1_10052912	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	4597	Open in IMG/M
3300003319\|soilL2_10081346	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	2871	Open in IMG/M
3300003324\|soilH2_10228736	All Organisms → cellular organisms → Bacteria	4560	Open in IMG/M
3300003324\|soilH2_10349661	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1725	Open in IMG/M
3300003987\|Ga0055471_10000884	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	4290	Open in IMG/M
3300003993\|Ga0055468_10019643	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1461	Open in IMG/M
3300004081\|Ga0063454_100017784	All Organisms → cellular organisms → Bacteria	2163	Open in IMG/M
3300004081\|Ga0063454_100794161	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	730	Open in IMG/M
3300004114\|Ga0062593_100246229	All Organisms → cellular organisms → Bacteria	1472	Open in IMG/M
3300004114\|Ga0062593_102427504	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	592	Open in IMG/M
3300004153\|Ga0063455_100336034	All Organisms → cellular organisms → Bacteria	852	Open in IMG/M
3300004282\|Ga0066599_100018196	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	2301	Open in IMG/M
3300004463\|Ga0063356_100105857	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	3069	Open in IMG/M
3300004463\|Ga0063356_100181761	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	2451	Open in IMG/M
3300004463\|Ga0063356_100573634	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1516	Open in IMG/M
3300004463\|Ga0063356_102700423	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M
3300004463\|Ga0063356_103038935	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	723	Open in IMG/M
3300005329\|Ga0070683_100868672	All Organisms → cellular organisms → Bacteria	865	Open in IMG/M
3300005329\|Ga0070683_101212675	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	725	Open in IMG/M
3300005564\|Ga0070664_100414537	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1233	Open in IMG/M
3300005616\|Ga0068852_101760299	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	642	Open in IMG/M
3300005617\|Ga0068859_101384302	All Organisms → cellular organisms → Bacteria	776	Open in IMG/M
3300005888\|Ga0075289_1062061	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300005981\|Ga0081538_10110853	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1347	Open in IMG/M
3300006196\|Ga0075422_10160754	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	903	Open in IMG/M
3300006844\|Ga0075428_100688510	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1089	Open in IMG/M
3300006844\|Ga0075428_102193046	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	570	Open in IMG/M
3300006845\|Ga0075421_102479973	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	541	Open in IMG/M
3300006846\|Ga0075430_101011183	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	685	Open in IMG/M
3300006853\|Ga0075420_100659115	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	903	Open in IMG/M
3300006876\|Ga0079217_10540425	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	738	Open in IMG/M
3300006894\|Ga0079215_10448361	All Organisms → cellular organisms → Bacteria	783	Open in IMG/M
3300006904\|Ga0075424_101490882	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	718	Open in IMG/M
3300006954\|Ga0079219_12202830	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	530	Open in IMG/M
3300007004\|Ga0079218_10784150	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	912	Open in IMG/M
3300009094\|Ga0111539_10214499	All Organisms → cellular organisms → Bacteria	2242	Open in IMG/M
3300009157\|Ga0105092_10082061	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1756	Open in IMG/M
3300009162\|Ga0075423_11990964	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	629	Open in IMG/M
3300009168\|Ga0105104_10215197	All Organisms → cellular organisms → Bacteria → Proteobacteria	1045	Open in IMG/M
3300009176\|Ga0105242_12600848	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	555	Open in IMG/M
3300010397\|Ga0134124_11451817	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	713	Open in IMG/M
3300011333\|Ga0127502_10197444	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	677	Open in IMG/M
3300012186\|Ga0136620_10110072	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1262	Open in IMG/M
3300012212\|Ga0150985_102275197	All Organisms → cellular organisms → Bacteria	845	Open in IMG/M
3300012212\|Ga0150985_106375303	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	849	Open in IMG/M
3300012905\|Ga0157296_10429456	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	502	Open in IMG/M
3300012914\|Ga0157297_10119008	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	819	Open in IMG/M
3300012943\|Ga0164241_11421868	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	510	Open in IMG/M
3300012958\|Ga0164299_10056685	All Organisms → cellular organisms → Bacteria	1860	Open in IMG/M
3300014296\|Ga0075344_1017635	All Organisms → cellular organisms → Bacteria	1071	Open in IMG/M
3300014310\|Ga0075331_1003990	All Organisms → cellular organisms → Bacteria	3354	Open in IMG/M
3300014320\|Ga0075342_1003730	All Organisms → cellular organisms → Bacteria	3071	Open in IMG/M
3300014325\|Ga0163163_10584374	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1180	Open in IMG/M
3300014745\|Ga0157377_10244242	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1160	Open in IMG/M
3300017965\|Ga0190266_10186166	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	976	Open in IMG/M
3300018059\|Ga0184615_10001377	All Organisms → cellular organisms → Bacteria	13213	Open in IMG/M
3300018063\|Ga0184637_10050453	All Organisms → cellular organisms → Bacteria	2538	Open in IMG/M
3300018422\|Ga0190265_10002433	All Organisms → cellular organisms → Bacteria	12500	Open in IMG/M
3300018422\|Ga0190265_10105784	All Organisms → cellular organisms → Bacteria	2651	Open in IMG/M
3300018422\|Ga0190265_10332939	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1599	Open in IMG/M
3300018422\|Ga0190265_10401303	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1469	Open in IMG/M
3300018422\|Ga0190265_10746315	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1101	Open in IMG/M
3300018422\|Ga0190265_10903620	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1005	Open in IMG/M
3300018429\|Ga0190272_12652780	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300018429\|Ga0190272_13115378	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	515	Open in IMG/M
3300019259\|Ga0184646_1322777	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	503	Open in IMG/M
3300019362\|Ga0173479_10273017	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	756	Open in IMG/M
3300019487\|Ga0187893_10428111	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	886	Open in IMG/M
3300021090\|Ga0210377_10006445	All Organisms → cellular organisms → Bacteria	9507	Open in IMG/M
3300021184\|Ga0196959_10065420	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	781	Open in IMG/M
3300023102\|Ga0247754_1086704	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	749	Open in IMG/M
3300024430\|Ga0196962_10039205	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1426	Open in IMG/M
3300025537\|Ga0210061_1013706	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1300	Open in IMG/M
3300025796\|Ga0210113_1053191	All Organisms → cellular organisms → Bacteria	813	Open in IMG/M
3300025912\|Ga0207707_10017147	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	6310	Open in IMG/M
3300025932\|Ga0207690_10031669	All Organisms → cellular organisms → Bacteria	3387	Open in IMG/M
3300025945\|Ga0207679_11292018	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	670	Open in IMG/M
3300025953\|Ga0210068_1025130	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	870	Open in IMG/M
3300025971\|Ga0210102_1000406	All Organisms → cellular organisms → Bacteria	11425	Open in IMG/M
3300025971\|Ga0210102_1107843	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	600	Open in IMG/M
3300026025\|Ga0208778_1023518	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	610	Open in IMG/M
3300026088\|Ga0207641_12624639	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	502	Open in IMG/M
3300026111\|Ga0208291_1091340	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300026905\|Ga0207516_1011587	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	693	Open in IMG/M
3300027056\|Ga0209879_1073665	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	540	Open in IMG/M
3300027909\|Ga0209382_11509378	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	669	Open in IMG/M
3300027909\|Ga0209382_11564118	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	654	Open in IMG/M
3300028587\|Ga0247828_10619608	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	663	Open in IMG/M
3300028589\|Ga0247818_10623052	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	743	Open in IMG/M
3300028592\|Ga0247822_11048476	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	675	Open in IMG/M
3300028592\|Ga0247822_11440486	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	581	Open in IMG/M
3300028812\|Ga0247825_10248682	All Organisms → cellular organisms → Bacteria	1236	Open in IMG/M
3300028812\|Ga0247825_10275936	All Organisms → cellular organisms → Bacteria	1172	Open in IMG/M
3300028812\|Ga0247825_10762956	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	697	Open in IMG/M
3300028889\|Ga0247827_10632568	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	689	Open in IMG/M
3300030006\|Ga0299907_10195233	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1671	Open in IMG/M
3300030006\|Ga0299907_10340778	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1216	Open in IMG/M
3300030006\|Ga0299907_10671341	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	797	Open in IMG/M
3300030619\|Ga0268386_10109917	All Organisms → cellular organisms → Bacteria	2127	Open in IMG/M
3300030620\|Ga0302046_10333774	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1246	Open in IMG/M
3300030902\|Ga0308202_1152449	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	515	Open in IMG/M
3300031092\|Ga0308204_10264471	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	563	Open in IMG/M
3300031229\|Ga0299913_10009501	All Organisms → cellular organisms → Bacteria	8598	Open in IMG/M
3300031229\|Ga0299913_10034063	All Organisms → cellular organisms → Bacteria	4809	Open in IMG/M
3300031229\|Ga0299913_10156820	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	2247	Open in IMG/M
3300031229\|Ga0299913_10872327	All Organisms → cellular organisms → Bacteria	871	Open in IMG/M
3300031538\|Ga0310888_10510509	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300031548\|Ga0307408_100629395	All Organisms → cellular organisms → Bacteria	957	Open in IMG/M
3300031548\|Ga0307408_102107448	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	544	Open in IMG/M
3300031852\|Ga0307410_11489347	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	596	Open in IMG/M
3300031903\|Ga0307407_11516887	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	530	Open in IMG/M
3300032005\|Ga0307411_10114711	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1936	Open in IMG/M
3300032126\|Ga0307415_100518346	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1046	Open in IMG/M
3300032157\|Ga0315912_10061712	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	2956	Open in IMG/M
3300033412\|Ga0310810_10000858	All Organisms → cellular organisms → Bacteria	30854	Open in IMG/M
3300033550\|Ga0247829_10606916	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	909	Open in IMG/M
3300033550\|Ga0247829_10999424	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	695	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	72.36%
Host-Associated	Host-Associated	27.64%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	59.35%
Plants	Host-Associated → Plants	27.64%
Aquatic	Environmental → Aquatic	13.01%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	58.54%
Rhizosphere	Host-Associated → Plants → Rhizosphere	17.89%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.13%
Freshwater	Environmental → Aquatic → Freshwater	5.69%
Marine	Environmental → Aquatic → Marine	5.69%
Sediment	Environmental → Aquatic → Sediment	1.63%
Roots	Host-Associated → Plants → Roots	1.63%
Cave	Environmental → Terrestrial → Cave	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	45.53%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.45%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.50%
Wetlands	Environmental → Aquatic → Marine → Wetlands	5.69%
Loam	Environmental → Terrestrial → Soil → Loam	5.69%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.88%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.25%
Sand	Environmental → Terrestrial → Soil → Sand	2.44%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.44%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.63%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.63%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.63%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.81%
Ice	Environmental → Aquatic → Freshwater → Ice	0.81%
Pond	Environmental → Aquatic → Freshwater → Pond	0.81%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.51%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.45%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	9.76%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	8.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.50%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	5.69%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.88%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.06%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.25%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	3.25%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	3.25%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.44%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.44%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.63%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	1.63%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.63%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.81%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.81%
Sediment	Environmental → Aquatic → Freshwater → Pond → Sediment	0.81%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.81%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.81%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	18.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	8.94%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.94%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	5.69%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	4.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.06%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	4.06%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.25%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	3.25%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	3.25%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	3.25%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	3.25%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.44%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.44%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.44%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.63%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.63%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.63%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	1.63%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	1.63%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.63%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.63%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.81%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.81%
Freshwater	Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater	0.81%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.81%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.81%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	0.81%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.81%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090015	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001305	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300003267	Sugarcane bulk soil Sample L1	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300003987	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2	Environmental	Open in IMG/M
3300003993	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004282	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Initial sediment	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005888	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_103	Environmental	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300011333	Cornfield soil microbial communities from Stanford, California, USA - CI-CA-CRN metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012186	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ416 (21.06)	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012905	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2	Environmental	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300012943	Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300014296	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqC_D1	Environmental	Open in IMG/M
3300014310	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_TuleA_D1	Environmental	Open in IMG/M
3300014320	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D1	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018059	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_coex	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300019259	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300019487	White microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaG	Environmental	Open in IMG/M
3300021090	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redo	Environmental	Open in IMG/M
3300021184	Soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_20	Environmental	Open in IMG/M
3300023102	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S184-509B-5	Environmental	Open in IMG/M
3300024430	Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20	Environmental	Open in IMG/M
3300025537	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D1 (SPAdes)	Environmental	Open in IMG/M
3300025796	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025953	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025971	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqC_D2 (SPAdes)	Environmental	Open in IMG/M
3300026025	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_103 (SPAdes)	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026111	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailB_D1 (SPAdes)	Environmental	Open in IMG/M
3300026905	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A4-10 (SPAdes)	Environmental	Open in IMG/M
3300027056	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300030619	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (Novaseq)	Environmental	Open in IMG/M
3300030620	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111	Environmental	Open in IMG/M
3300030902	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_356 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032157	Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soil	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPICI_01144250	2088090015	Soil	MTGRASVGLDDLEEVARRIAEGRFTNRAECTLEVSTYVWNRNSFEAQHHFEDACTDHGIRFAVVERVGGIEWSCPKAAGT
ICCgaii200_09862772	2228664021	Soil	MTGRPSVGLADLEEVSRRIADGRFSNRPGCTLEVSTYVWNRNPFEAQEGFEDACAAHGIRFAVVERIGGIEWACP
ICChiseqgaiiDRAFT_08816963	3300000033	Soil	MTGRPSVGLADLEEVSRRIAEGRLTNRPECTLEVSTYVWNRNSFEAQEKFEDACAEHGVRFAVVERIGGIEWACP*
ICChiseqgaiiDRAFT_08817632	3300000033	Soil	MTGRPSVGLADLEEVSRRIADGRFSNRPGCTLEVSTYVWNRNPFEAQEGFEDACAAHGIRFAVVERIGGIEWACP*
JGI10216J12902_1163057572	3300000956	Soil	MTGRPSVGLDDLEEVARRIAQGRFTNRAGCTLEVSTYVWNRNSFEAQHRFEDACNDHAIRFAVVDRVGGIEWSCPKAVEP*
C688J14111_100314521	3300001305	Soil	ATAGSTSPDLSPSQLGAHMTGRPSVGLDDLEEVARRIAQGRFTNRAECTLEVSTYVWNRNSFEAQHHFEDACTAHGIRFSVVDRIGGIEWACPKAAGT*
soilL1_100529124	3300003267	Sugarcane Root And Bulk Soil	MTGRPSVGMDDLEEISRRIAAGRLSNKPGCTLEVSTYVWNRNSFEARQGFEDACVERGIRFAVVDRIGGVEWSCPE
soilL2_100813465	3300003319	Sugarcane Root And Bulk Soil	MTGRPSVGMDDLEEISRRIAAGRLSNKPGCTLEVSTYVWNRNSFEARQGFEDACVERGIRFAVVDRIGGVEWSCPEGARS*
soilH2_102287362	3300003324	Sugarcane Root And Bulk Soil	MPGRPSVGLADLEEVSRRIAEGRFTNRAGCTLEVSTYVWNRNSFEAQERFEDACTGHGIRFAVVERIGGIEWACP*
soilH2_103496612	3300003324	Sugarcane Root And Bulk Soil	MTGRPSVGLDDLEEISRRIAGGRLTNKAGCTLEVSTYVWNRNSFEARHRFEDACAERGIRFAVVDRVGGVEWSCPEGARS*
Ga0055471_100008846	3300003987	Natural And Restored Wetlands	MTGRPSVGLADLEEVSRRIAEGRLSNRPECTLEVSTYVWNRNSFEAQERFEDACTEHGIRFAVVERIGGIEWACP*
Ga0055468_100196434	3300003993	Natural And Restored Wetlands	MTGRPSVGLADLDEVSRRIVAGEFSNRPGCILEVSTYVWNRNSFETQHLFEESCQAHGIRFAVVERIGGIEWACP*
Ga0063454_1000177843	3300004081	Soil	MTGRPSVGLDDLEEVARRIAQGRFTNRAECTLEVSTYVWNRNSFEAQHHFEDACTAHGIRFSVVDRIGGIEWACPKAAGT*
Ga0063454_1007941612	3300004081	Soil	AHMTGRPSVGLDDLEEVARRIAQGRFSIRAGCTLEVSTYVWNRNSFEAQHRFEDACNDYEIRFAVVDRVGGIEWSCPKATET*
Ga0062593_1002462293	3300004114	Soil	MTGRPSVGLADLEEVARRIAEGRLSNRPECTLEVSTYVWNRNSFEAQERFEDTCAEHGVRFAVVERIGGIEWACP*
Ga0062593_1024275041	3300004114	Soil	MTGRPSVGLDDLEELARRIAQGRFTNKPGCTLEISTYVWNRNSFEAQHRFEDVCGEHGIRFAVVERVGGIEWSCPKTTQT*
Ga0063455_1003360341	3300004153	Soil	DDLEEVARRIAQGRFTNRAECTLEVSTYVWNRNSFEAQHHFEDACTAHGIRFSVVDRIGGIEWACPKAAGT*
Ga0066599_1000181963	3300004282	Freshwater	MTGRPSVGLADLEEVSRRIQAREFSNRPGCTLEVSTYVWNRNSFEAQHRFEDTCQAHGITFAVVERIGGIEWACP*
Ga0063356_1001058572	3300004463	Arabidopsis Thaliana Rhizosphere	MTGRPSVGLDDLEEISRRIAAGRLTNKAGCTLEVSTYVWNRNSFEAQHRFEDVCAKHGIRFAVVERIGGVEWACPEGARS*
Ga0063356_1001817615	3300004463	Arabidopsis Thaliana Rhizosphere	MPGRPSVGLADLEELSRRIAEGRLSNRPGCTLEVSTYVWNRNSFEAQHRFEDACEAHGIRFAVVERIGGIEWACP*
Ga0063356_1005736344	3300004463	Arabidopsis Thaliana Rhizosphere	MTGRPSVGLADLEEVSRRIADGRFSNRPGCTPEVSTYVWNRNPFEAQEGFEDACAAHGIRFAVVERNGGIEWACP*
Ga0063356_1027004233	3300004463	Arabidopsis Thaliana Rhizosphere	MAGRPSVGLEDLEEVSRRIAAGRFSNRPGCTLEVSTYVWNRNPFEAQVQFEDACTAHGIRFAVVERIGGIEWACP*
Ga0063356_1030389351	3300004463	Arabidopsis Thaliana Rhizosphere	MTGRASVGLDDLEEVARRIAEGRFTNRAECTLEVSTYVWNRNSFEAQHHFEDACTDHGIRFAVVERVGGIEWSCPKAAGT*
Ga0070683_1008686721	3300005329	Corn Rhizosphere	LEELARRIAQGRFTNKPGCTLEISTYVWNRNSFEAQHRFEDVCGEHGIRFAVVERVGGIEWSCPKTTQT*
Ga0070683_1012126752	3300005329	Corn Rhizosphere	MTGRASVGLDDLEEVARRIAQGRFTNRAECTLEVSTYVWNRNSFEAQHHFEDACTDHGIRFAVVERVGGIEWSCPKAAGT*
Ga0070664_1004145372	3300005564	Corn Rhizosphere	MTGRPSVGLDDLEEVARRIAQGRFTNKPGCTLEISTYVWNRNSFEAQHHFEDACGEHGIRFAVVDRIGGIEWSCPKAAET*
Ga0068852_1017602992	3300005616	Corn Rhizosphere	MTGRPSVGLDDLEEVARRIAQGRFTNRAECTLEVSTYVWNRNSFEAQHHFEDACTDHGIRFAVVERVGGIEWSCPKAAGT*
Ga0068859_1013843022	3300005617	Switchgrass Rhizosphere	MTGRASVGLDDLEEVARRIAQGRFTNRAECTLEVSTYVWNRNSFEAQHHFEDACTGHGIRFAVVDRVGGIEWSCPKAAAT*
Ga0075289_10620612	3300005888	Rice Paddy Soil	MTGRPSVGLDDLEEISRRIAAGRLTNKPGCTLEVSTYVWNRNSFEARHRFEDACAERGVRFAVVDRVGGVEWSCPEGARP*
Ga0081538_101108532	3300005981	Tabebuia Heterophylla Rhizosphere	MGGRPSVGLEDLEEVSRRIATGRFSNRPGCTLEVSTYVWNRNPFEAQVRFEDACTAHGIRFAVVERIGGIEWACP*
Ga0075422_101607541	3300006196	Populus Rhizosphere	EEVSRRIAAGRFSNRPGCTLEVSTYVWNRNPFEAQVQFEDACTAHGIRFAVVERIGGIEWACP*
Ga0075428_1006885102	3300006844	Populus Rhizosphere	MTDRPSVGLEDLEKVSRRIVAGRFSNRPGCTLEVSTYVWNRNSFEAQHGFEDACQAHGIRFAVIDRIGGIEWACP*
Ga0075428_1021930461	3300006844	Populus Rhizosphere	LEDLEEVSRRIAAGRFSNRPGCTLEVSTYVWNRNPFEAQVQFEDACTAHGIRFAVVERIGGIEWACP*
Ga0075421_1024799731	3300006845	Populus Rhizosphere	MTDRPSVGLEDLEEVSRRIVAGRFSNRPGCTLEVSTYVWNRNSFEAQHGFEDACQAHGIRFAVIDRIGGIEWACP*
Ga0075430_1010111832	3300006846	Populus Rhizosphere	MTGRPSVGLADLEEVARRIAEGRFSNRPGCTLEVSSYVWNRNSFEAQESFEDACAAYGIRFAVVERIGGIEWACP*
Ga0075420_1006591151	3300006853	Populus Rhizosphere	SVGLADLEEVARRIAEGRFSNRPGCTLEVSSYVWNRNSFEAQESFEDACAAYGIRFAVVERIGGIEWACP*
Ga0079217_105404252	3300006876	Agricultural Soil	MTGRPSVGLADLDEVSRRIVAGEFSNRPGCILEVSTYVWNRNSFEAQHQFEESCQAHGFRFAVVERIGGIEWACP*
Ga0079215_104483612	3300006894	Agricultural Soil	MTGRPSVGLADLDEVSRRIVAGEFSNRPGCILEVSTYVWNRNSFEAQHQFEESCQAHGIRFAVVERIGGIEWVCP*
Ga0075424_1014908822	3300006904	Populus Rhizosphere	MTGRPSVGLDDLEEVARRIAQGRFTNKPGCTLEISTYVWNRNSFEAQHHFEDACGEHGIRFAVVDRVGGIEWSCPKAAET*
Ga0079219_122028301	3300006954	Agricultural Soil	MTGRPSVGLDDLEEISRRIAAGRLTNKAGCTLEVSTYVWNRNSFEAQHRFEDVCAEHGIRFAVVERVGGVEWACPEGARS*
Ga0079218_107841501	3300007004	Agricultural Soil	EEETLMTGRPSVGLADLEEVSRRIAEGRFSNRAGCTLEVSTYVWNRNSFEAQEQFEDACAGHGIRFAVVERVGGIEWACP*
Ga0111539_102144991	3300009094	Populus Rhizosphere	MTGRPSVGLADLEEVARRIAEGRLSNRPECTLEVSTYVWNRNSFEAQERFEDTCAEHGVRFAVVERI
Ga0105092_100820614	3300009157	Freshwater Sediment	MVGRPSVGLEDLEEVSRRIAAGRFSNRPGCTLEVSTYVWNRNPFEAQVQFEDACTAHGIRFSVVERIGGIEWACP*
Ga0075423_119909642	3300009162	Populus Rhizosphere	MTGRPSVGLDDLEELARRIAQGRFTNKPGCTLEISTYVWNRNSFEAQHHFEDACTDHGIRFAVVERVGGIEWSCPKAAGT*
Ga0105104_102151971	3300009168	Freshwater Sediment	MTGRPSVGLADLEEVSRRIAEGRLTNRPECTLEVSTYVWNRNSFEAQEKFEDACAEHGVRFAVVERIGGIA
Ga0105242_126008482	3300009176	Miscanthus Rhizosphere	MTGRASVGLDDLEEVARRIAEGRFTNRAECTLEVSTYVWNRNSFEAQHHFEDACTGHGIRFAVVDRVGGIEWSCPKAAAT*
Ga0134124_114518172	3300010397	Terrestrial Soil	MTGRASVGLDDLEEVARRIAQGRFTNKPGCTLEISTYVWNRNSFEAQHDFEDACGEHGIRFAVVDRIGGIEWSCPKAAET*
Ga0127502_101974442	3300011333	Soil	MTGRPSVGLADLDEVSRRIVAGEFSNRPGCILEDSTYVWNRNSFETQHLFEESCQAHGIRFAVVERIGGIEWACP*
Ga0136620_101100722	3300012186	Polar Desert Sand	VDRSVDWRKLMAGRPSVGLADLDEVSRRITTGEFSNRSGCTLEVSTYVWNRNSFEAQHGFEDACQAHGIRFAVVERIGGIEWACP*
Ga0150985_1022751972	3300012212	Avena Fatua Rhizosphere	MTGRPSVGLDDLEEVARRIAQGRFTNRAECTLEVSTYVWNRNSFEAQHHFEDACTGHGIRFAVVDRIGGIEWACPKAAGT*
Ga0150985_1063753032	3300012212	Avena Fatua Rhizosphere	MTGRPSVGLDDLEEVARRIAQGRFSIRAGCTLEVSTYVWNRNSFEAQHRFEDACNDYEIRFAVVDRVGGIEWSCPKATET*
Ga0157296_104294561	3300012905	Soil	STSWSKLDTGGSTSPDPSHPQFGAHMTGRASVGLDDLEEVARRIAQRRFTNRAECTLEVSTYVWNRNSFEAQHHFEDACTDHGIRFAVVERVGGIEWSCPKAAGT*
Ga0157297_101190081	3300012914	Soil	GAHMTGRASVGLDDLEEVARRIAQGRFTNRAECTLEVSTYVWNRNSFEAQHHFEDACTDHGIRFAVVERVGGIEWSCPKAAGT*
Ga0164241_114218682	3300012943	Soil	MTGRASVGLDDLEEVARRIAQGRFTNRAECTLEVSTYVWNRNSFEAQHQFEDACTGHGIRFAVVERVGGIEWSCPKAAGT*
Ga0164299_100566852	3300012958	Soil	MTGRPSVGLDDLEEVARRIAQGRFTNKPGCTLEISTYVWNRNSFEAQHRFEDVCGEHGIRFAVVERVGGIEWSCPKTTQT*
Ga0075344_10176352	3300014296	Natural And Restored Wetlands	MTGRPSVGLADLDEVSRRIEGGEFTNRPECTLEISTYVWNRNSFDAHHRFEDACQARGIRFAVVERIGGIEWACPEP*
Ga0075331_10039904	3300014310	Natural And Restored Wetlands	VQADIRTGEDEAMPGRPSVGLADLEEVSRRIAEGRLSNRPECTLEVSTYVWNRNSFEAQERFEDACTEHGIRFAVVERIGGIEWACP*
Ga0075342_10037302	3300014320	Natural And Restored Wetlands	MTGRPSVGLADLDEVSRRIEGGEFTNRPECTLEISTYVWNRNSFDAHHRFEDACQAKGIRFAVVERIGGIEWACPEP*
Ga0163163_105843743	3300014325	Switchgrass Rhizosphere	MTGRPSVGLDDLEEVARRIAQGRFTNKPGCTLEISTYVWNRNSFEAQHDFEDACGEHGIRFAVVDRIGGIEWSCPKAAET*
Ga0157377_102442421	3300014745	Miscanthus Rhizosphere	LDTGGSTSPDPSHPQFGAHMTGRASVGLDDLEEVARRIAQGRFTNRAECTLEVSTYVWNRNSFEAQHHFEDACTDHGIRFAVVERVGGIEWSCPKAAGT*
Ga0190266_101861663	3300017965	Soil	MTGRPSVGLADLEEVSRRIAEGRLTNRPECTLEVSTYVWNRNSFEAQEKFEDACAEHGVRFAVVERIGGIEWACP
Ga0184615_100013775	3300018059	Groundwater Sediment	MPGRPSVGLADLEEVSRPITTGQFSNRPGCTLEVSTYVWNRNSFEAQHQFEDACRAHGIRFAVIERIGGIEWACP
Ga0184637_100504533	3300018063	Groundwater Sediment	MAGRPSVGLADLEEVSRRIVAGQFSNRPGCTLEVSTYVWNRNSFEAQHGFEDACQAHGIRFAVIERIGGIEWACP
Ga0190265_100024339	3300018422	Soil	MTGRPSVGLSDLEEVSRRIMDGEFSSRPGCTLEVSTYVWNRNELDARHRFEDACEARQIRFAVVDRIGGIEWACP
Ga0190265_101057843	3300018422	Soil	MTGRPSVGLADLDEVSRRIVAGEFSNRPGCILEISIYVWNRNSFETQHLFEESCQAHGIRFAVVERIGGIEWACP
Ga0190265_103329392	3300018422	Soil	MTGRPSVGLADLEAVSDLIIEGRFSNRPGCTLEVSTYVWNRNSFEAQTRFEDACEDHGIRFAVVERVGGIEWACP
Ga0190265_104013032	3300018422	Soil	MTGRPSVGLADLEEVSRRITAGQFSNRSGCTLEVSTYVWNRNSFEAQQGFEDACQAHGIRFAVIERIGGIEWACP
Ga0190265_107463153	3300018422	Soil	MAGRPSVGLADLEEVSRRIAAGQFTNRPDCTLEVSTYVWNRNSFEARHGFEDACQAHGIRFAVIERIGGIEWNCP
Ga0190265_109036203	3300018422	Soil	MTGRPSVGLADLEEVSRRMAAGEFSDRPGCTLEVSTYVWNRNSFEAQQGFEDACQARGIRFAVIERIGGIEWACP
Ga0190272_126527802	3300018429	Soil	MTGRPSVGLADLEEVSRRITAGQLSNRPGCTLEVSTYVWNRNSFEAQQGFEDACQAHGIRFAVIERIGGIE
Ga0190272_131153782	3300018429	Soil	EEVSRRIAAGQFSNRPGCTLEVSTYVWNRNSFEAQHGFEDACQAHGIRFAVIERIGGIEWACP
Ga0184646_13227772	3300019259	Groundwater Sediment	MTGRPSVGLADLEEVSRRIAAGQFSNRPGCTLEVSTYVWNRNSFEAQHGFEDACQAHGIRFAVIERIGGIEWACP
Ga0173479_102730172	3300019362	Soil	MTGRASVGLDDLEEVARRIAQGRFTNRAECTLEVSTYVWNRNSFEAQHHFEDACTDHGIRFAVVERVGGIEWSCPKAAGT
Ga0187893_104281112	3300019487	Microbial Mat On Rocks	MTGRPSVGLADLEEVSRRITAGQFSNRPGCTLEVSTYVWNRNSFEAQHRFEDSCQAHGIRFAVVERVGGIEWACP
Ga0210377_1000644510	3300021090	Groundwater Sediment	MPGRPSVGLADLEEVSPRITAGQFSNRPGCTLEVSTYVWNRNSFEAQHQFEDACQAHGIRFAVIERIGGIEWACP
Ga0196959_100654203	3300021184	Soil	MPGRPSVGLADLEEVSRRIAEGQLSNRPGCTLEVSTYVWNRNSFEAQERFEDACAAHGIRFAVVERVGGIEWACP
Ga0247754_10867041	3300023102	Soil	MTGRPSVGLADLEEVARRIAEGRLSNRPECTLEVSTYVWNRNSFEAQERFEDTCAEHGVRFAVVERIGGIEWACP
Ga0196962_100392052	3300024430	Soil	MPGRPSVGLADLEEVSRRIGEGRFTNRPGCTLEVSTYVWNRNSFDAQVRFEDSCAAHDIRFAVVDRIGGIEWACP
Ga0210061_10137061	3300025537	Natural And Restored Wetlands	MTGRPSVGLADLEEVSRRIAEGRLSNRPECTLEVSTYVWNRNSFEAQERFEDACTEHGIRFAVVERIGGIEWACP
Ga0210113_10531913	3300025796	Natural And Restored Wetlands	LADLEEVSRRIAVGRLSNRPECTLEVSTYVWNRNSFEAQERFEDACTEHGIRFAVVERIGGIEWACP
Ga0207707_100171471	3300025912	Corn Rhizosphere	MTGRASVGLDDLEEVARRIAQGRFTNRAECTLEVSTYVWNRNSFEAQHHFEDACTDHGIRFAVVERVGGIEWS
Ga0207690_100316691	3300025932	Corn Rhizosphere	MTGRASVGLDDLEEVARRIAQGRFTNRAECTLEVSTYVWNRNSFEAQHHFEDACNGHGIRFAVVDRIGGIEWACPKAAGT
Ga0207679_112920182	3300025945	Corn Rhizosphere	MTGRPSVGLDDLEEVARRIAQGRFTNKPGCTLEISTYVWNRNSFEAQHHFEDACGEHGIRFAVVDRIGGIEWSCPKAAET
Ga0210068_10251302	3300025953	Natural And Restored Wetlands	MTGRPSVGLADLDEVSRRIEGGEFTNRPECTLEISTYVWNRNSFDAHHRFEDACQARGIRFAVVERIGGIEWACPEP
Ga0210102_100040613	3300025971	Natural And Restored Wetlands	MTGRPSVGLADLDEVSRRIEGGEFTNRPECTLEISTYVWNRNSFDAHHRFEDACQAKGIRFAVVERIGGIEWACPEP
Ga0210102_11078431	3300025971	Natural And Restored Wetlands	MTGRPSVGLADLDEVSRRIEGGEFTNRPECTLEISTYVWNRNSFDAHHRFEDACQARGIRFAVVERIGG
Ga0208778_10235182	3300026025	Rice Paddy Soil	MTGRPSVGLDDLEEISRRIAAGRLTNKPGCTLEVSTYVWNRNSFEARHRFEDACAERGVRFAVVDRVGGVEWSCPEGARP
Ga0207641_126246392	3300026088	Switchgrass Rhizosphere	MTGRPSVGLDDLEEVARRIAQGRFTNKPGCTLEISTYVWNRNSFEAQHRFEDVCGEHGIRFAVVERVGGIEWSCPKTTQT
Ga0208291_10913402	3300026111	Natural And Restored Wetlands	MTGRPSVGLADLEEVSRRIAEGRLSNRPECTLEVSTYVWNRNSFEAQERFEDACTEHGIRFAVVE
Ga0207516_10115871	3300026905	Soil	DPSHPQFGAHMTGRASVGLDDLEEVARRIAQGRFTNRAECTLEVSTYVWNRNSFEAQHHFEDACTDHGIRFAVVERVGGIEWSCPKAAGT
Ga0209879_10736652	3300027056	Groundwater Sand	LEEVSRRIAAGQFSNRPGCTLEVSTYVWNRNSFEAQHGFEDACQAHGIRFGVIERIGGIEWACP
Ga0209382_115093781	3300027909	Populus Rhizosphere	MTDRPSVGLEDLEEVSRRIVAGRFSNRPGCTLEVSTYVWNRNSFEAQHGFEDACQAHGIRFAVIDRIGGIEWACP
Ga0209382_115641182	3300027909	Populus Rhizosphere	MAGRPSVGLADLEEVARRIAEGRLSNRPECTLEVSTYVWNRNSFEAQERFEDTCAEHGVRFAVVERIGGIEWACP
Ga0247828_106196081	3300028587	Soil	MTGRASVGLDDLEEVARRIAEGRFTNRAECTLEVSTYVWNRNSFEAQHHFEDACTDHGIRFA
Ga0247818_106230521	3300028589	Soil	MTGRASVGLDDLEEVARRIAQGRFTNRAECTLEVSTYVWNRNSFEAQHHFEDACTDHGIRFA
Ga0247822_110484761	3300028592	Soil	EEEQPMTGRPSVGLADLEEVSRRIAEGRLTNRPECTLEVSTYVWNRNSFEAQEKFEDACAEHGVRFAVVERIGGIEWACP
Ga0247822_114404861	3300028592	Soil	MTGRASVGLDDLEEVARRIAEGRFTNRAECTLEVSTYVWNRNSFEAQHHFEDACTGHGIRFA
Ga0247825_102486822	3300028812	Soil	MTGRASVGLDDLEEVARRIAQGRFTNRAECTLEVSTYVWNRNSFEAQHHFEDACTGHGIRFAVVDRVGGIEWSCPKAAAT
Ga0247825_102759361	3300028812	Soil	MTGRASVGLDDLEEVARRIAQGRFTNRAECTLEVSTYVWNRNSFEAQHHFEDACTDHGIRFAVVD
Ga0247825_107629561	3300028812	Soil	MTGRPSVGLDDLEEVARRIAQGRFTNKPGCTLEISTYVWNRNSFEAQHYFEDACGEHGIRFAVVDRIGGIEWSCPKAAET
Ga0247827_106325682	3300028889	Soil	MTGRPSVGLADLEEVSRRIAEGRLTNRPECTLEVSAYVWNRNSFEAQEKFEDACAEHGVRFAVVERIGGIEWACP
Ga0299907_101952333	3300030006	Soil	MTSRPSVGLSDLEEVSRRIVAGQFSNRPGCVLEVSTYVWNRNELDARHRFEDACHDHEIVFAVVERIGGIEWACP
Ga0299907_103407784	3300030006	Soil	MTGRPSVGLADLEEVARRIAAGEFSNRPGCTLEVSTYVWNRNAFEAREHFEDACGMHGIRFAVVERIGGIEWACP
Ga0299907_106713413	3300030006	Soil	MAGRPSVGLADLEEVSRRIAAGQFTNRPDCTLEVSTYVWNRNSFEAQHGFEDACQAHGIRFAVIERIGGIEWDCP
Ga0268386_101099175	3300030619	Soil	MTGRPSVGLADLEEVSRRIVAGQFSNRPGCTLEVSTYVWNRNSFEAQHGFEDACQAHGIRFAVIDRIGGIEWACP
Ga0302046_103337742	3300030620	Soil	MTGRPSVGSADLEEVSRRIVAGQFSNRPGCTLEVSTYVWNRNSFEAQHGFEDACQARGIRFAVIDRIGGIEWACP
Ga0308202_11524492	3300030902	Soil	TDGEFENRPGCRLEVSTYVWQRNSFEAQQRFEEACETHGIAFEVLQQIGGIEWATRGETPGGRVP
Ga0308204_102644712	3300031092	Soil	MTGRPSVGLADLEEVSRRIAEGRLSNRPECTLEVSTYVWNRNSFEAQERFEDTCAEHGVRFAVVERIGGIEWACP
Ga0299913_100095015	3300031229	Soil	MTGRPSVGLADLDEVSRRIVAGEFSNRPGCILEVSTYVWNRNSFETQHLFEDSCVAHGIRFAVVERIGGIEWACP
Ga0299913_100340634	3300031229	Soil	MPGRPSVGLADLEEVARRIAAGEFSNRPGCTLEVSTYVWNRNAFEAREHFEDACGMHGIRFAVVERIGGIEWACP
Ga0299913_101568205	3300031229	Soil	MAGRPSVGLADLEEVSRRIAAGQFTNRPDCTLEVSTYVWNRNSFEAQHGFEDACQAHGIRFAVIERIGGIEWNCP
Ga0299913_108723272	3300031229	Soil	MTGRPSVGLADLDEVSRRIVAGEFSNRPGCILEVSTYVWNRNSFETQHLFEDSCQAHGIRFAVVERIGGIEWACP
Ga0310888_105105092	3300031538	Soil	MTGRPSVGLDDLEEVARRIAQGRFTNKPGCTLEISTYVWNRNSFEAQHDFEDACGEHGIRFAVVDRIGGIEWSCPKAAET
Ga0307408_1006293952	3300031548	Rhizosphere	MTGRPSVGLADLDEVSRRIVAGEFSNRPGCTLEVSTYVWNRNSFEAQHQFEESCQAHGIRFAVVERIGGIEWACP
Ga0307408_1021074482	3300031548	Rhizosphere	ENLMTGRPSVGLSDLEEVSRRIAEGRFSNRPGSTLEVSTYVWNRNPFEARERFEDACQAHGIRFAVIERIGGIEWVCP
Ga0307410_114893471	3300031852	Rhizosphere	MPGRPSVGLADLEEVSRRIAEGRFSNRQGCTLEVSTYVWNRNSFEAQERFEDACAEHGIRFAVVERIGGIEWACP
Ga0307407_115168871	3300031903	Rhizosphere	MTGRPSVGLDDLEEVARRIAQGRFTNRAGCTLEVSTYVWNRNSFEAQHGFEDACNGHGIRFAVVDRVGGIEWSCPKAAGP
Ga0307411_101147115	3300032005	Rhizosphere	RPSVGLADLDEVSRRIVAGEFSNRPGCTLEVSTYVWNRNSFEAQHQFEESCQAHGIRFAVVERIGGIEWACP
Ga0307415_1005183462	3300032126	Rhizosphere	MTGRPSVGLSDLEEVSRRIAEGRFSNRPGCTLEVSTYVWNRNPFEARERFEDACQAHGIRFAVIERIGGIEWVCP
Ga0315912_100617125	3300032157	Soil	MAGRPSVGLEDLEEVSRRIATGRFSNRPGCTLEVSTYVWNRNPFEAQVRFEDACTAHGIRFAVVERIGGIEW
Ga0310810_1000085810	3300033412	Soil	MTGRPSVGLDDLEELARRIAQGRFTNKPGCTLEISTYVWNRNSFEAQHRFEDVCGEHGIRFAVVERVGGIEWSCPKTTQT
Ga0247829_106069161	3300033550	Soil	LEEVSRRIAEGRLTNRPECTLEVSTYVWNRNSFEAQEKFEDACAEHGVRFAVVERIGGIEWACP
Ga0247829_109994241	3300033550	Soil	MTGRASVGLDDLEEIARRIAEGRFTNRAECTLEVSTYVWNRNSFEAQHHFEDACTDHGIRFAVVDRVGGIEWSCPKAAAT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F070283

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences