NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F070392

Metagenome / Metatranscriptome Family F070392

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F070392
Family Type Metagenome / Metatranscriptome
Number of Sequences 123
Average Sequence Length 48 residues
Representative Sequence DEDVLKMVETTPGAVGLVDVRSINDQVNVVRVDGKLPMEDGYLPH
Number of Associated Samples 107
Number of Associated Scaffolds 123

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.81 %
% of genes from short scaffolds (< 2000 bps) 0.81 %
Associated GOLD sequencing projects 97
AlphaFold2 3D model prediction Yes
3D model pTM-score0.18

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (99.187 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(17.886 % of family members)
Environment Ontology (ENVO) Unclassified
(25.203 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(57.724 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 9.59%    β-sheet: 8.22%    Coil/Unstructured: 82.19%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.18
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 123 Family Scaffolds
PF01687Flavokinase 43.90
PF06574FAD_syn 28.46
PF12706Lactamase_B_2 6.50
PF07690MFS_1 1.63
PF14534DUF4440 1.63
PF02738MoCoBD_1 1.63
PF08238Sel1 0.81
PF03544TonB_C 0.81
PF08669GCV_T_C 0.81
PF12849PBP_like_2 0.81
PF05222AlaDh_PNT_N 0.81
PF08899DUF1844 0.81
PF01862PvlArgDC 0.81

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 123 Family Scaffolds
COG0196FAD synthaseCoenzyme transport and metabolism [H] 72.36
COG0810Periplasmic protein TonB, links inner and outer membranesCell wall/membrane/envelope biogenesis [M] 0.81
COG1945Pyruvoyl-dependent arginine decarboxylaseAmino acid transport and metabolism [E] 0.81


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A99.19 %
All OrganismsrootAll Organisms0.81 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300005541|Ga0070733_10111916All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter1750Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil17.89%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil8.94%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil8.13%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil6.50%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland5.69%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland4.88%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment4.06%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil4.06%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil4.06%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil3.25%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil3.25%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.25%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa3.25%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil2.44%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog2.44%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog1.63%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil1.63%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil1.63%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil1.63%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil1.63%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland0.81%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.81%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil0.81%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil0.81%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.81%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil0.81%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.81%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil0.81%
PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland0.81%
BogEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Bog0.81%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil0.81%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere0.81%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001356Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007EnvironmentalOpen in IMG/M
3300002568Grasslands soil microbial communities from Hopland, California, USA - 2EnvironmentalOpen in IMG/M
3300004080Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300004081Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)EnvironmentalOpen in IMG/M
3300004082Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3EnvironmentalOpen in IMG/M
3300004091Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004092Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004635Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300005435Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaGEnvironmentalOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005538Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1EnvironmentalOpen in IMG/M
3300005541Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1EnvironmentalOpen in IMG/M
3300005569Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154EnvironmentalOpen in IMG/M
3300005610Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3EnvironmentalOpen in IMG/M
3300005712Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4EnvironmentalOpen in IMG/M
3300006052Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013EnvironmentalOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006804Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200EnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009524Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaGEnvironmentalOpen in IMG/M
3300009635Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10EnvironmentalOpen in IMG/M
3300010337Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300012199Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012210Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012357Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012363Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaGEnvironmentalOpen in IMG/M
3300012532Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014155Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaGEnvironmentalOpen in IMG/M
3300014169Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaGEnvironmentalOpen in IMG/M
3300017924Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5EnvironmentalOpen in IMG/M
3300017932Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4EnvironmentalOpen in IMG/M
3300017933Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1EnvironmentalOpen in IMG/M
3300017942Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3EnvironmentalOpen in IMG/M
3300017943Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4EnvironmentalOpen in IMG/M
3300017947Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MGEnvironmentalOpen in IMG/M
3300017959Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MGEnvironmentalOpen in IMG/M
3300017970Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300017996Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_40EnvironmentalOpen in IMG/M
3300017999Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MGEnvironmentalOpen in IMG/M
3300018034Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10EnvironmentalOpen in IMG/M
3300018037Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10EnvironmentalOpen in IMG/M
3300018038Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10EnvironmentalOpen in IMG/M
3300018042Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10EnvironmentalOpen in IMG/M
3300018047Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10EnvironmentalOpen in IMG/M
3300018062Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018086Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MGEnvironmentalOpen in IMG/M
3300019787Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021046Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depthEnvironmentalOpen in IMG/M
3300021088Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-MEnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021180Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-OEnvironmentalOpen in IMG/M
3300021402Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-OEnvironmentalOpen in IMG/M
3300021406Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300021433Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-OEnvironmentalOpen in IMG/M
3300021474Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-OEnvironmentalOpen in IMG/M
3300021477Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-OEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300024288Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungalEnvironmentalOpen in IMG/M
3300025915Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025928Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025929Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027097Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF019 (SPAdes)EnvironmentalOpen in IMG/M
3300027783Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027824Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)EnvironmentalOpen in IMG/M
3300027854Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)EnvironmentalOpen in IMG/M
3300027855Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)EnvironmentalOpen in IMG/M
3300027867Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027869Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027884Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)EnvironmentalOpen in IMG/M
3300028023Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE5Host-AssociatedOpen in IMG/M
3300028882Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_3EnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300029883I_Bog_E2 coassemblyEnvironmentalOpen in IMG/M
3300029986Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E2_1EnvironmentalOpen in IMG/M
3300030056Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_3EnvironmentalOpen in IMG/M
3300030503III_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030509Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_2EnvironmentalOpen in IMG/M
3300030760Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030813Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031525Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031718Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031753Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515EnvironmentalOpen in IMG/M
3300031890Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032829Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3EnvironmentalOpen in IMG/M
3300032897Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5EnvironmentalOpen in IMG/M
3300033004Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4EnvironmentalOpen in IMG/M
3300033808Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_100_20EnvironmentalOpen in IMG/M
3300033829Peat soil microbial communities from Stordalen Mire, Sweden - 715 P2 1-5EnvironmentalOpen in IMG/M
3300033888Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-3-X1EnvironmentalOpen in IMG/M
3300034163Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12269J14319_1023248323300001356Peatlands SoilLKLVETTPGAVGLVDVRSINDQVNVVRVDGKLPMEDGYLPH*
C688J35102_11855978123300002568SoilSDEDLLNYVKSAPGAVGLVDVRSVNDHVNIVRVDGKVPMEEGYLPH*
Ga0062385_1080158223300004080Bog Forest SoilDSEMKAFLVAHKDAVTLADSDADVLRIVETMPGALGLVGVRSINDQVNVLRVGGKLPMEDGYLSH*
Ga0063454_10106468123300004081SoilDVLKYVQSAPGAVGLVDVRSLNDHVNIVRVGGKVPMEDGYLPH*
Ga0062384_10059819423300004082Bog Forest SoilDADADVLHLVETTPGAIGLVDVRSINDQVNVLKVGGKLPMEEGYLPH*
Ga0062384_10065538613300004082Bog Forest SoilFLVAHKDAVTLADSDADVLRIVETMPGALGLVGVRSINDQVNVLRVGGKLPMEDGYLSH*
Ga0062387_10030157313300004091Bog Forest SoilDSDADVIKIVQSNPGAIGLVEFRSIDNTINVVRVDGKLPMESGYLPH*
Ga0062389_10139005423300004092Bog Forest SoilAHQGSITTVDSDEDVLKVVETTPGAVGLVDVRSINDQVNVVRVDGKLPMEDGYLPH*
Ga0062388_10059994223300004635Bog Forest SoilHLTHMSDSEMKAFLVAHKDAVTLADSDADVLRIVETMPGALGLVGVRSINDQVNVLRVGGKLPMEDGYLSH*
Ga0070714_10242635713300005435Agricultural SoilEDVLKYVQNAPAAVGLVDVRSVNDHVNIIRVDGKVPMEEGYLPH*
Ga0070713_10036346733300005436Corn, Switchgrass And Miscanthus RhizosphereDEDVLKYVENTPGAVGLVDVRSVNDHVTIVRVDGKVPMEEGYLPH*
Ga0070731_1056029613300005538Surface SoilHVIQTTPGTVGLVEVHSINDQVNVLKVGGKLPMEAGYLPH*
Ga0070733_1011191613300005541Surface SoilEGAIGLVDVRSINDQVNVVRVDGKLPMEDGYLPH*
Ga0070733_1055994823300005541Surface SoilMIADSDADVLKIVQSIPGAVGLVDVRSVDNSITVVRVGGKLPMESGYLPH*
Ga0066705_1002509813300005569SoilSVKLVDSDDEVLTYVASTPGAVGLVDVRSVNDRVTIVRVDGKVPMEDGYLPH*
Ga0070763_1058215523300005610SoilDADALKIVQSTPGAIGLVDVRSVDNTINVVRVDGKLPMESGYLPH*
Ga0070764_10002028103300005712SoilMADSDADVLKIVQTTPGAIGLVDVRSVDNTINVVRVDGKLPMESGYLPH*
Ga0075029_10100353223300006052WatershedsSDADVLKAVSSVPGSIGMVDVRSVDGSIKVVRVDNKLPMESGYLPH*
Ga0070712_10072161313300006175Corn, Switchgrass And Miscanthus RhizosphereTTPGAVGLVDVRAVNDKVKVLHVDGKLPMEEGYLPH*
Ga0070765_10018665213300006176SoilSDADVLRIVETMPGALGLVGVRSINDQVNVLRVGGKLPMEDGYLSH*
Ga0070765_10150829613300006176SoilADSDAEVLKIVQSIPGAIGLVDVRSVDNTINVVRVDGKLPMESGYLPH*
Ga0070765_10151937713300006176SoilDSDADVLKIVQSTPGAIGFVDVRSVDNTINVVRVDGKLPMESGYLPH*
Ga0079221_1110535823300006804Agricultural SoilYVENTPGAIGLVDVRSVTDHVNIVRVDGKVPMEEGYLPH*
Ga0099828_1062770823300009089Vadose Zone SoilLVDSDQDVLAIVESTPGAVGLVDVRSVTDRVRIVHVDGKLPMEDGYLPH*
Ga0066709_10251385513300009137Grasslands SoilIVDSDDEVLTLVESVPGAVGLVDVRSVNGRVTIVRVDGKVPMEDGYLPH*
Ga0066709_10320782413300009137Grasslands SoilSTPGAVGLVDVRSVNGRVTIVRVDGKVPMEDGYLPH*
Ga0116225_128069313300009524Peatlands SoilDLLRFVQETPGAVGLVDVRSINDQVNVLRVGGKLPMEDGYLPH*
Ga0116117_105738113300009635PeatlandPGAVGLVDVRAVDGTINVVRVDGKLPMESGYLPH*
Ga0134062_1028925723300010337Grasslands SoilVPGAVGLVDVRSVNGRVTIVRVDGKVPMEDGYLPH*
Ga0126372_1159345423300010360Tropical Forest SoilESRPGALGLVDFHAIHDKSVQVLKVDGKLPLDQGYLPH*
Ga0137383_1079097913300012199Vadose Zone SoilRDSLKLVDSDQDVLAIVESTPGAVGLVDVRSVTDRVKIVHVDGKLPMEDGYLPH*
Ga0137362_1141514023300012205Vadose Zone SoilVESVPGAVGLVDVRSVNGRVTIVRVDGKVPMEDGYLPH*
Ga0137378_1076814323300012210Vadose Zone SoilDVLAIVESTPGAVGLVDVRSVTDRVKIVHVDGKLPMEDGYLPH*
Ga0137378_1184305813300012210Vadose Zone SoilEEVLAFVESTPGAVGLIDVRSVTDRITVVRVDGKVPMEDGYLPH*
Ga0137384_1044431223300012357Vadose Zone SoilVKLVDSDDEVLTYVQSTPGAVGLVDVRSVTDRVNIIRVDGKVPMEDGYLPH*
Ga0137384_1128637323300012357Vadose Zone SoilPGAVGLIDVRSVTDRITVVRVDGKVPMEDGYLPH*
Ga0137390_1100085923300012363Vadose Zone SoilVKILDSDDEVLTYVESTPGAIGLVDVRTVTNRVNIVRVDGKVPMEEGYLPH*
Ga0137373_1038835423300012532Vadose Zone SoilVDSDDEVLTLVESVPGAVGLVDVRSVNGRVAIVRVDGKVPMEDGYLPH*
Ga0137416_1110365923300012927Vadose Zone SoilIEHRDSLKLVDSDEDVLSIVESLPGAVGLVEVRSVTDRVKIVHVDGKLPMEDGYLPH*
Ga0181524_1020618623300014155BogQGLITTVDSDEDVLRLVETTPGAVGLVDVRSINDQVNVVRVDGKLPMEDGYLPH*
Ga0181531_1050202313300014169BogVDSDEDVLKVVETMPGAVGLVDVRSINDQVNVVRVDGKLPMEDGYLPH*
Ga0187820_110988313300017924Freshwater SedimentLSCTRIPAAHQASITTVDSDEDVLKLVETTPGAVGLVDVRSINDQVNVVRVDGKLPMEDGYLPH
Ga0187814_1041184023300017932Freshwater SedimentMVDSDADVLHLVETTPGAVGLVDVRSINDQVNVLKVGGKLPMEDGYLPH
Ga0187801_1028087923300017933Freshwater SedimentITTVDSDEDVLKLVETTPGAVGLVDVRSINDQVNVVRVDGKLPMEDGYLPH
Ga0187808_1023552523300017942Freshwater SedimentVDSDAEVLRLVEATPGAVGLVEVRSIDDQVNVLKVDGKLPMEAGYLPH
Ga0187819_1085028423300017943Freshwater SedimentTTVDSDEDVLKLVETTPGAVGLVDVRSINDQVNVVRVDGKLPMEDGYLPH
Ga0187785_1003164833300017947Tropical PeatlandTSHQDAFTIVDSDTDVLHAVETTPGAIGLVDVRSINDQVNVLKVGGKLPMEDGYLPH
Ga0187779_1060731223300017959Tropical PeatlandSHQDTFTMVDSDADVLHAVEATPGAIGLVDVRSINDKVNVLKVGGKLPMEDGYLPH
Ga0187783_1039993323300017970Tropical PeatlandAAADSDADVLRLVQSNPGAIGLVELHSVDNSINVVRVDGKLPMESGYLPH
Ga0187783_1076311913300017970Tropical PeatlandDADVLKIVQNTPGAVGLVDVRAVDATINVVRVDGKLPMESGYLPH
Ga0187891_125049723300017996PeatlandIQMVDSDADVLKIVQSTPGAIGLVDVRSVDNTINVVRVDGKLPMESGYLPH
Ga0187767_1023469813300017999Tropical PeatlandDVLHAVETTPGAIGLVDVRSINDQVNVLKVGGKLPMEDGYLPH
Ga0187863_1043922313300018034PeatlandGSITMVDSDEDVLKVVEPMPGAVGLVDVRSINDQVNVVRVDGKLPMEDGYLPH
Ga0187883_1030157523300018037PeatlandDSDADVLKRVQSTPGAVGVVDVRSVDSTIKVVRVDGKLPMESGYLPH
Ga0187855_1055434913300018038PeatlandIADSDAEVLKIVQTTPGAIGLVEFRSIDNTINVVRVDGKLPEESGYLPH
Ga0187871_1024834313300018042PeatlandDALTLADSDADVLHIVETTPGAVGLVGVRSINDQVNVLRVGGKLPMEDGYLSH
Ga0187859_1020888523300018047PeatlandSTPGAIGLVDVRSVDNTINVIRVDGKLPMESGYLPH
Ga0187784_1096320623300018062Tropical PeatlandVLVDSDADVLKLVQSMPGAVGLVELHSVDNSINVVRVDGKLPMESGYLPH
Ga0187769_1141139413300018086Tropical PeatlandIASHKESFMFVDSDADVLRFVETTPGALGLVEVRSIDDQVNVLKVDGKLPMEAGYLPH
Ga0182031_111889813300019787BogSIQLVDSDADVLKIVQSTPGAVGFVDVRSVDNTINVVRVDGKLPMESGYLPH
Ga0210407_1103836323300020579SoilDSDAEVLKIVQSTPGAIGFVDVRSIDNTINVVRVDGKLPMESGYLPH
Ga0210403_1124611513300020580SoilTMPGAVGLVDVRSINDQVNVVRVEGKLPMEDGYLPH
Ga0210399_1009087743300020581SoilDEDVLKMVETTPGAVGLVDVRSINDQVNVVRVDGKLPMEDGYLPH
Ga0210399_1132121323300020581SoilDSIVMADSDADVLKIVQTTPGAIGLVDVRSVDNTINVVRVDGKLPMESGYLPH
Ga0210395_1113542423300020582SoilQASITTVDSDEDVLKVVETTPGAVGLVDVRSINDQVNVVRVDGKLPMEDGYLPH
Ga0210401_1113393713300020583SoilQSTPGAVGFVDVRSVDNTINVVRVDGKLPMESGYLPH
Ga0215015_1070365813300021046SoilVANTPGAVGLVDVRSVTDRVSIVRVDGKVPMEDGYLPH
Ga0210404_1069359123300021088SoilSDADVLKIVQTTPGAIGLVDVRSVDNTINVVRVDGKLPMESGYLPH
Ga0210405_1100740623300021171SoilSITTVDSDEDVLKVVETTPGTVGLVDVRSINDQVNVVRVDGKLPMEDGYLPH
Ga0210396_1148959913300021180SoilLKSFIAAHQGSITLVDSDEDVLKVVETMPGAVGLVDVRSINDQINVVRVDGKLPMEDGYLPH
Ga0210385_1120620813300021402SoilVETMPGAVGLVDVRSINDQINVVRVDGKLPMEDGYLPH
Ga0210386_1097881213300021406SoilTVDSDEDVLKMVETTPGAVGLVDVRSINDQVNVVRVDGKLPMEDGYLPH
Ga0210394_1020289913300021420SoilHQGSITMVDSDEDVLKVVETMPGAVGLIDVRSINDQVNVVRVDGKLPMEDGYLPH
Ga0210394_1031035733300021420SoilASHQDALTLADSDAEVLRIVETTPGAMGLVDVRSINDQVTVLKVGGKLPMEDGYLSH
Ga0210394_1105438923300021420SoilVVETMPGAVGLVDVRSINDQINVVRVDGKLPMEDGYLPH
Ga0210394_1140961013300021420SoilVMADSDADVIKIVQSTPGAIGLVEFRSIDNTINVVRVDGKLPEESGYLPH
Ga0210394_1178650113300021420SoilAQSELKAFVASHKDVLTLADSDAEVLRIVETTPGAMGLVDVRSINDQVTVLKVGGKLPMEDGYLSH
Ga0210384_1070368523300021432SoilEDVLKIVETVPGAMGLVDVRSINDQINVVRVDGKLPMEAGYLPH
Ga0210391_1081135923300021433SoilDEDVLKVVETMPGAVGLVDVRSINDQVNVVRVDGKLPMEDGYLPH
Ga0210390_1087260913300021474SoilHQGSITLVDSDEEVLKVVETMPGAVGLVDVRSITDQINVVRVDGKLPMEDGYLPH
Ga0210398_1097550613300021477SoilGSITMVDSDEDVLKVVETMPGAVGLVDVRSINDQVNVVRVDGKLPMEDGYLPH
Ga0210402_1028338833300021478SoilGSITTVDSDEDVLKVVETMPGAVGLVDVRSINDQVNVVRVDGKLPMEDGYLPH
Ga0210409_1168109523300021559SoilKVVETMPGAVGLVDVRSINDQINVVRVDGKLPMEDGYLPH
Ga0179589_1057674013300024288Vadose Zone SoilSDADVLKAGESTSGAIGLVDVRSVDGNIKVVKVGGKLPTEAGYLPH
Ga0207693_1046831123300025915Corn, Switchgrass And Miscanthus RhizosphereVSSDQEMLTVVETTPGAVGLVDVRAVNDKVKVLHVDGKLPMEEGYLPH
Ga0207700_1061235913300025928Corn, Switchgrass And Miscanthus RhizosphereTPGAVGLVEVRSVTDRVTVIRVDGKVPMEAGYLPH
Ga0207664_1195696613300025929Agricultural SoilEDVLKYVQNAPAAVGLVDVRSVNDHVNIIRVDGKVPMEEGYLPH
Ga0208861_10949423300027097Forest SoilTPGAVGLVGVRSINDQVNVLRVGGKLPMEDGYLSH
Ga0209448_1026573223300027783Bog Forest SoilEVLKIVQSIPGAIGLVDVRSVDNTINVVRVDGKLPMESGYLPH
Ga0209040_1003502853300027824Bog Forest SoilLRIVQSTPGAIGLVDVRSVDNTINVIRVDGKLPMESGYLPH
Ga0209517_1070442423300027854Peatlands SoilTVDSDEDVLKLVETTPGAVGLVDVRSINDQVNVVRVDGKLPMEDGYLPH
Ga0209693_1039986723300027855SoilDADALKIVQSTPGAIGLVDVRSVDNTINVVRVDGKLPMESGYLPH
Ga0209167_1067742213300027867Surface SoilEDVLKMVETTPGAVGLVDVRSINDQVNVVRVDGKLPMEDGYLPH
Ga0209579_1012385913300027869Surface SoilVLKIVQAVPGAIGFIDVRSIDNSINVVRVDGKLPMESGYLPH
Ga0209275_1015290613300027884SoilSISLVDSDEDVLKVVETMPGAVGLVDVRSINDQINVVRVDGKLPMEDGYLPH
Ga0209275_1063886613300027884SoilEDVLKVVETMPGAVGLVDVRSINDQVNVVRVDGKLPMEDGYLPH
Ga0265357_103726713300028023RhizosphereIAVHQGSISLVDSDEDVLKVVETMPGAVGLVDVRSINDQINVIRVDGKLPMEDGYLPH
Ga0302154_1024070713300028882BogSIQIADSDADVLKIVQSTPGAIGLVDVRSVDGSINVIRVDGKLPMETGYLPH
Ga0308309_1015017513300028906SoilSDADVLRIVETMPGALGLVGVRSINDQVNVLRVGGKLPMEDGYLSH
Ga0308309_1091700723300028906SoilSDADVVKQVESTPGAVGLVEVHSVSGGVNVVRVHGKLPMETGYLPH
Ga0311327_1058765613300029883BogVDSDADVLKIVQSTPGAVGFVDVRSVDNTINVVRVDGKLPMESGYLPH
Ga0302188_1014896213300029986BogSTPGAIGLVDVRSVDGSINVIRVDGKLPMETGYLPH
Ga0302181_1024932713300030056PalsaTSILLVDADEDVLKAVRSMPGAIGMIEVHAVDNTINVVRVDGKLPMQSGYLPH
Ga0311370_1203010323300030503PalsaADEDVLKAVRSMPGAIGMIEVHAVDNTINVVRVDGKLPMQSGYLPH
Ga0302183_1018683013300030509PalsaMADSDADVLKLVQSTPGAVGLVEIHSIDNTVTVVRVDGKLPMESGYLPH
Ga0265762_113637423300030760SoilSSELKSFIAAHQGSITMVDSDEDVLKVVETMPGAVGLVDVRSINDQVNVVRVDGKLPMEDGYLPH
Ga0265750_104534023300030813SoilDVLKIVQSNPGAIGFVDVRSVDNTINVVRVDGKLPMESGYLPH
Ga0302326_1141280813300031525PalsaVLKIVQSTSGAVGLVDVRSVDNSINVVRVDGKLPMESGYLPH
Ga0310686_11442161113300031708SoilFIAAHQGSITLVDSDEDVLKVVETMPGAVGLVDVRSINDQINVVRVDGKLPMEDGYLPH
Ga0307474_1005718953300031718Hardwood Forest SoilFVESTPGALGLVDVRSINDQVRVLKVDGKLPMEDGYLPH
Ga0307468_10073488023300031740Hardwood Forest SoilTHMSESEWKAFVSSHKDAVTWVDSDAQVLQIVETVQGAVGFVDVRSINDHVSVLKVGGKLPMEEGYLSH
Ga0307477_1003911863300031753Hardwood Forest SoilELKSFIATHQGSITAVDSDDDVLRLVETTPGAVGLIDVRSINDQVNVVRVDGKLPMEDGYLPH
Ga0306925_1106864313300031890SoilDANVLKIVQTTAGAIGLVDVRAVDGTVNVVRVDGKLPMESGYLPH
Ga0307471_10086252333300032180Hardwood Forest SoilEVLKLVQSTPGAVGFVDVRSVDNTINVVRVDGKLPMESGYLPH
Ga0307472_10149523113300032205Hardwood Forest SoilIAAHQGSITLVDSDEDVLKVVETMPGAVGLVDVRSINDQVKVVRVDGKLPMEDGYLPH
Ga0335070_1194785313300032829SoilMSRTQMHAFIASHKDAFVLVDSDSDVLRTVEAIPGALGLVSVSSINDQVRVVKVGGKLPMEEGYLPH
Ga0335071_1036467513300032897SoilIDSHKDSFVVVDSDSEVLRTVEAIPGAIGLIGVSSINDRVRVVKVGGKLPMEQGYLPH
Ga0335071_1036887513300032897SoilLRVVESTPGAVGLVDVRSITDQVNVLKVGGKLPMEQGYLPH
Ga0335084_1081570313300033004SoilSEWRAFVTAHNDAVTWAASDAEVLRIVEKLPGAVGFVDVRSINDHVSILRVGGKLPMEDGYLSH
Ga0314867_075392_21_1703300033808PeatlandMGDSDDDVLKAVENTPGAIGLVDVRSINDQVNVLKVDGKLPHEAGYLPH
Ga0334854_065358_16_1653300033829SoilMADSDADVLKIVQSTSGAVGLVDVRSVDNSINVVRVDGKLPMESGYLPH
Ga0334792_059118_974_11263300033888SoilMLVDTDADVLKIVQSIPGAIGFVDVRSIDSTISVVRVDGKLPMESGYLPH
Ga0370515_0455818_420_5393300034163Untreated Peat SoilIVQSTPGAIGLVDVRSVDNTINVVRVDGKLPMESGYLPH


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