Metagenome / Metatranscriptome Family F070403

Basic Information
Family ID	F070403
Family Type	Metagenome / Metatranscriptome
Number of Sequences	123
Average Sequence Length	37 residues
Representative Sequence	PIEQSPRFYMAVNLKTAASLGVSLSDVFVARANEVRE
Number of Associated Samples	91
Number of Associated Scaffolds	123

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.81 %
% of genes near scaffold ends (potentially truncated)	96.75 %
% of genes from short scaffolds (< 2000 bps)	93.50 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (21.138 % of family members)
Environment Ontology (ENVO)	Unclassified (38.211 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (61.789 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 45.95% β-sheet: 16.22% Coil/Unstructured: 37.84%
Feature Viewer

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Pfam ID	Name	% Frequency in 123 Family Scaffolds
PF04392	ABC_sub_bind	69.92
PF00072	Response_reg	4.07
PF03401	TctC	2.44
PF02627	CMD	1.63
PF02371	Transposase_20	1.63
PF07690	MFS_1	0.81
PF07045	DUF1330	0.81
PF03988	DUF347	0.81
PF02913	FAD-oxidase_C	0.81
PF12680	SnoaL_2	0.81
PF02743	dCache_1	0.81
PF00589	Phage_integrase	0.81
PF13185	GAF_2	0.81

COG ID	Name	Functional Category	% Frequency in 123 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	69.92
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	2.44
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	1.63
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	1.63
COG3547	Transposase	Mobilome: prophages, transposons [X]	1.63
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	0.81
COG2972	Sensor histidine kinase YesM	Signal transduction mechanisms [T]	0.81
COG4705	Uncharacterized membrane-anchored protein	Function unknown [S]	0.81
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	83.74 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	69.92 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.81 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	34.15 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	15.45 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	0.81 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	20.33 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	13.82 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.63 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.81 %
Sulfuricellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Sulfuricellaceae	0.81 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.81 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	17.89 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	13.82 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.63 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.81 %
Sulfuriferula	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Sulfuricellaceae → Sulfuriferula	0.81 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.81 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	13.82 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	2.44 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.63 %
Sulfuriferula multivorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Sulfuricellaceae → Sulfuriferula → Sulfuriferula multivorans	0.81 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.81 %
Agrobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Agrobacterium	0.81 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.81 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	13.82 %
Bradyrhizobium sp. Ec3.3	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	2.44 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.63 %
Agrobacterium rhizogenes	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Agrobacterium → Agrobacterium rhizogenes	0.81 %
Sulfuriferula multivorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Sulfuricellaceae → Sulfuriferula → Sulfuriferula multivorans	0.81 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.81 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.81 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_17172157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2653	Open in IMG/M
3300000955\|JGI1027J12803_101207701	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	511	Open in IMG/M
3300005332\|Ga0066388_104787523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	688	Open in IMG/M
3300005332\|Ga0066388_108031814	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	527	Open in IMG/M
3300005598\|Ga0066706_10379077	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1124	Open in IMG/M
3300005713\|Ga0066905_100310797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1242	Open in IMG/M
3300005713\|Ga0066905_100312854	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	1238	Open in IMG/M
3300005713\|Ga0066905_101579428	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	600	Open in IMG/M
3300005713\|Ga0066905_102117654	All Organisms → cellular organisms → Bacteria → Proteobacteria	523	Open in IMG/M
3300005764\|Ga0066903_101049395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1496	Open in IMG/M
3300005764\|Ga0066903_101649352	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1218	Open in IMG/M
3300005764\|Ga0066903_101975799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1119	Open in IMG/M
3300005764\|Ga0066903_104768090	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	721	Open in IMG/M
3300005764\|Ga0066903_106037107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	634	Open in IMG/M
3300005764\|Ga0066903_106302801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	619	Open in IMG/M
3300005764\|Ga0066903_107274930	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	572	Open in IMG/M
3300006032\|Ga0066696_10428265	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	865	Open in IMG/M
3300006175\|Ga0070712_100359596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1193	Open in IMG/M
3300006575\|Ga0074053_11932189	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	587	Open in IMG/M
3300006794\|Ga0066658_10187497	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	1085	Open in IMG/M
3300006797\|Ga0066659_11194242	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	635	Open in IMG/M
3300006847\|Ga0075431_100699876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	991	Open in IMG/M
3300006871\|Ga0075434_101188423	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	775	Open in IMG/M
3300007258\|Ga0099793_10726766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	501	Open in IMG/M
3300007265\|Ga0099794_10388679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	728	Open in IMG/M
3300009100\|Ga0075418_11972855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	636	Open in IMG/M
3300009522\|Ga0116218_1099452	All Organisms → cellular organisms → Bacteria	1325	Open in IMG/M
3300009792\|Ga0126374_10180562	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1314	Open in IMG/M
3300010046\|Ga0126384_10926715	All Organisms → cellular organisms → Bacteria	788	Open in IMG/M
3300010046\|Ga0126384_12223908	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	528	Open in IMG/M
3300010048\|Ga0126373_11454514	All Organisms → cellular organisms → Bacteria → Proteobacteria	751	Open in IMG/M
3300010358\|Ga0126370_10133545	All Organisms → cellular organisms → Bacteria → Proteobacteria	1781	Open in IMG/M
3300010358\|Ga0126370_10342369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1205	Open in IMG/M
3300010360\|Ga0126372_10881504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	895	Open in IMG/M
3300010362\|Ga0126377_10212517	All Organisms → cellular organisms → Bacteria	1861	Open in IMG/M
3300010366\|Ga0126379_10031939	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4126	Open in IMG/M
3300010366\|Ga0126379_11106977	All Organisms → cellular organisms → Bacteria → Proteobacteria	898	Open in IMG/M
3300010376\|Ga0126381_101369543	All Organisms → cellular organisms → Bacteria	1023	Open in IMG/M
3300010398\|Ga0126383_11295766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	818	Open in IMG/M
3300010398\|Ga0126383_11660643	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	728	Open in IMG/M
3300012199\|Ga0137383_10603741	All Organisms → cellular organisms → Bacteria → Proteobacteria	803	Open in IMG/M
3300012202\|Ga0137363_10570215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Sulfuricellaceae → Sulfuriferula → Sulfuriferula multivorans	954	Open in IMG/M
3300012202\|Ga0137363_11040834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	695	Open in IMG/M
3300012205\|Ga0137362_10342559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1294	Open in IMG/M
3300012205\|Ga0137362_10487858	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1066	Open in IMG/M
3300012210\|Ga0137378_11149945	All Organisms → cellular organisms → Bacteria → Proteobacteria	691	Open in IMG/M
3300012211\|Ga0137377_11852570	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Agrobacterium → Agrobacterium rhizogenes	522	Open in IMG/M
3300012355\|Ga0137369_10231047	All Organisms → cellular organisms → Bacteria	1410	Open in IMG/M
3300012357\|Ga0137384_10349077	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1226	Open in IMG/M
3300012361\|Ga0137360_10216287	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1559	Open in IMG/M
3300012362\|Ga0137361_11965250	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	501	Open in IMG/M
3300012948\|Ga0126375_10685109	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	796	Open in IMG/M
3300012948\|Ga0126375_10850982	All Organisms → cellular organisms → Bacteria → Proteobacteria	728	Open in IMG/M
3300012957\|Ga0164303_10424861	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	828	Open in IMG/M
3300012971\|Ga0126369_12940723	All Organisms → cellular organisms → Bacteria → Proteobacteria	558	Open in IMG/M
3300012988\|Ga0164306_11501120	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	577	Open in IMG/M
3300015356\|Ga0134073_10344782	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	546	Open in IMG/M
3300015372\|Ga0132256_100683210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1142	Open in IMG/M
3300015373\|Ga0132257_104349366	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300016270\|Ga0182036_11332104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	600	Open in IMG/M
3300016270\|Ga0182036_11677986	All Organisms → cellular organisms → Bacteria → Proteobacteria	536	Open in IMG/M
3300016294\|Ga0182041_10313461	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1305	Open in IMG/M
3300016319\|Ga0182033_10774239	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	844	Open in IMG/M
3300016341\|Ga0182035_10167728	All Organisms → cellular organisms → Bacteria	1705	Open in IMG/M
3300016357\|Ga0182032_10837599	All Organisms → cellular organisms → Bacteria	779	Open in IMG/M
3300016357\|Ga0182032_11079873	All Organisms → cellular organisms → Bacteria → Proteobacteria	688	Open in IMG/M
3300016371\|Ga0182034_11167384	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	669	Open in IMG/M
3300016371\|Ga0182034_11869061	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300016387\|Ga0182040_11178004	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	644	Open in IMG/M
3300016387\|Ga0182040_11677056	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	542	Open in IMG/M
3300016404\|Ga0182037_10434383	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1089	Open in IMG/M
3300018482\|Ga0066669_10232903	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1441	Open in IMG/M
3300021168\|Ga0210406_10949785	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300021444\|Ga0213878_10116789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1092	Open in IMG/M
3300021479\|Ga0210410_11659718	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300025905\|Ga0207685_10686099	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	556	Open in IMG/M
3300025915\|Ga0207693_10185750	All Organisms → cellular organisms → Bacteria → Proteobacteria	1636	Open in IMG/M
3300025928\|Ga0207700_11135531	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	698	Open in IMG/M
3300026304\|Ga0209240_1146140	All Organisms → cellular organisms → Bacteria → Proteobacteria	748	Open in IMG/M
3300026514\|Ga0257168_1144486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	530	Open in IMG/M
3300026550\|Ga0209474_10630074	All Organisms → cellular organisms → Bacteria → Proteobacteria	550	Open in IMG/M
3300026551\|Ga0209648_10064718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3092	Open in IMG/M
3300027616\|Ga0209106_1120846	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	587	Open in IMG/M
3300027874\|Ga0209465_10547704	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	576	Open in IMG/M
3300027905\|Ga0209415_10071688	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4106	Open in IMG/M
3300028716\|Ga0307311_10057988	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1037	Open in IMG/M
3300028778\|Ga0307288_10459738	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	523	Open in IMG/M
3300031421\|Ga0308194_10285750	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	566	Open in IMG/M
3300031543\|Ga0318516_10871825	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	507	Open in IMG/M
3300031545\|Ga0318541_10256720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	971	Open in IMG/M
3300031546\|Ga0318538_10650158	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	572	Open in IMG/M
3300031546\|Ga0318538_10664736	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300031549\|Ga0318571_10208506	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300031719\|Ga0306917_10184164	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1572	Open in IMG/M
3300031719\|Ga0306917_10184624	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1570	Open in IMG/M
3300031777\|Ga0318543_10328590	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300031797\|Ga0318550_10598545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	530	Open in IMG/M
3300031798\|Ga0318523_10176904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1064	Open in IMG/M
3300031833\|Ga0310917_10039717	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2835	Open in IMG/M
3300031833\|Ga0310917_10120270	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1709	Open in IMG/M
3300031833\|Ga0310917_10445813	All Organisms → cellular organisms → Bacteria → Proteobacteria	880	Open in IMG/M
3300031860\|Ga0318495_10099058	All Organisms → cellular organisms → Bacteria	1311	Open in IMG/M
3300031890\|Ga0306925_10106228	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2991	Open in IMG/M
3300031890\|Ga0306925_10167254	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2368	Open in IMG/M
3300031890\|Ga0306925_11104082	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	801	Open in IMG/M
3300031894\|Ga0318522_10199937	All Organisms → cellular organisms → Bacteria → Proteobacteria	756	Open in IMG/M
3300031896\|Ga0318551_10299842	All Organisms → cellular organisms → Bacteria	904	Open in IMG/M
3300031912\|Ga0306921_10022210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6977	Open in IMG/M
3300031912\|Ga0306921_10395922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1612	Open in IMG/M
3300031941\|Ga0310912_11031196	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300031942\|Ga0310916_10329926	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1294	Open in IMG/M
3300031946\|Ga0310910_10212991	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1501	Open in IMG/M
3300031946\|Ga0310910_10540810	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	924	Open in IMG/M
3300031947\|Ga0310909_10451398	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1079	Open in IMG/M
3300032039\|Ga0318559_10599979	All Organisms → cellular organisms → Bacteria → Proteobacteria	513	Open in IMG/M
3300032063\|Ga0318504_10355818	All Organisms → cellular organisms → Bacteria	696	Open in IMG/M
3300032064\|Ga0318510_10371420	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	606	Open in IMG/M
3300032067\|Ga0318524_10795206	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300032076\|Ga0306924_10366684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1650	Open in IMG/M
3300032076\|Ga0306924_10421682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1526	Open in IMG/M
3300032076\|Ga0306924_10555104	All Organisms → cellular organisms → Bacteria	1303	Open in IMG/M
3300032076\|Ga0306924_10862818	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1004	Open in IMG/M
3300032261\|Ga0306920_100771082	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1413	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.94%
Host-Associated	Host-Associated	4.06%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.94%
Plants	Host-Associated → Plants	4.06%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.25%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	80.49%
Loam	Environmental → Terrestrial → Soil → Loam	15.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.44%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.81%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.81%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	40.65%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.71%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.20%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.13%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.25%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.44%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	21.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	19.51%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	13.01%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	11.38%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.06%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.25%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.44%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.44%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.81%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.81%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.81%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.81%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.81%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006575	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021444	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026514	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027616	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F070403

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_03934400	2088090014	Soil	IEQSPRFYMAVNLKTAASLGVFLSDAFIARANGVRE
JGI1027J12803_1012077011	3300000955	Soil	EQSPRFYMAVNLKTAASLGVSLSDVFVARANEVIE*
Ga0066388_1047875232	3300005332	Tropical Forest Soil	MLNSYLEPTPIEQSPRFYMAVNLKTAASLGVSLSDVFIARAN
Ga0066388_1080318141	3300005332	Tropical Forest Soil	DMPIEQSPRFYMAVNLKTAASLGVSLSDVFVARANEVRE*
Ga0066706_103790771	3300005598	Soil	IEQSPRFYMAVNLKTAASLGVSLTDVFIARANEVIE*
Ga0066905_1003107972	3300005713	Tropical Forest Soil	IEQSPRFYMAVNLKAAAALGVSLSDVFVARANEVIE*
Ga0066905_1003128542	3300005713	Tropical Forest Soil	SDMPIEQSPRFYMAVNLKTAASLGISLSDVFIARANEVRE*
Ga0066905_1015794281	3300005713	Tropical Forest Soil	SDMPIEQSPRFYMAVNLKTAALLGVSLSDVFIARANEVRE*
Ga0066905_1021176542	3300005713	Tropical Forest Soil	MPIEQSPRFYMAVNLKTAASLGVSLSDVFVARANEVRE*
Ga0066903_1010493951	3300005764	Tropical Forest Soil	QSPRFYMAVNLKAAASLGVSFSDVFVARANEVRE*
Ga0066903_1016493524	3300005764	Tropical Forest Soil	IEQSPRFYMAVNLKTAASLGVSLSDVFVARANEVRE*
Ga0066903_1019757992	3300005764	Tropical Forest Soil	DIPIEQSAVNLKTAALLGVSLSDVFIARANEVRE*
Ga0066903_1047680901	3300005764	Tropical Forest Soil	MPIEQSPRFYMAVNLKTAALLGVSLSDVFIARANEVRE*
Ga0066903_1060371072	3300005764	Tropical Forest Soil	PIEQSPRFYMAVNLKTAASLGVSLSDVFIARANEVIE*
Ga0066903_1063028012	3300005764	Tropical Forest Soil	PIEQSPRFYMGVNLKTAASLGISLSDVFIARANEVRE*
Ga0066903_1072749302	3300005764	Tropical Forest Soil	DMPIEQSPRFYMGVNLKTAASLGVSLSDVFIARANEVRE*
Ga0066696_104282651	3300006032	Soil	EQSPRFYMGVNLKTAALLGVSLSDVFIARANEVRE*
Ga0070712_1003595963	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	IEQSPRFYMGVNLKTAASLGVSLSDVFIARANEVRE*
Ga0074053_119321892	3300006575	Soil	QSLRFHMAVNLKTAASLGISLSDSFVARANEVRE*
Ga0066658_101874971	3300006794	Soil	PIEQSPRFYMAVNLKTAASLGVSLSDVFIARANEVRE*
Ga0066659_111942421	3300006797	Soil	DMPIEQSPRFYMAVNLKTAALLGVSLSDVFVARANEVRE*
Ga0075431_1006998762	3300006847	Populus Rhizosphere	SDMPIEQSPRFYMAVNLKTAASLGVALSDVFVARANEVRE*
Ga0075434_1011884231	3300006871	Populus Rhizosphere	EQSPRFYMGVNLKTAASLGVSLSDVFIARANEVRE*
Ga0099793_107267661	3300007258	Vadose Zone Soil	QSPRFYMAVNLKAAASLGVSLSDVFIARANEVRE*
Ga0099794_103886791	3300007265	Vadose Zone Soil	QSPRFYMAVNLKAAALLGVSLSDVFVARANEVIE*
Ga0075418_119728551	3300009100	Populus Rhizosphere	MPIEQSPRFYMAVNLKTAASLGVALPDVFVARANEVRE*
Ga0116218_10994523	3300009522	Peatlands Soil	MRPPHFDMAINLKTAASLGIVLPPSFTARTDEVIE*
Ga0126374_101805621	3300009792	Tropical Forest Soil	QSPRFYMAVNLKTAALLGVSLSDVFIARANEVRE*
Ga0126384_109267151	3300010046	Tropical Forest Soil	PIEQSPRFYMAVNLKAAASLGVSFSDVFVARANEVRE*
Ga0126384_122239081	3300010046	Tropical Forest Soil	IEQSPRFYMAVNLKTAALLGVSLSDAFIARANEVRE*
Ga0126373_114545141	3300010048	Tropical Forest Soil	EQSPRFYMGVNLKTAASLGISLSDVFIARANEVRE*
Ga0126370_101335453	3300010358	Tropical Forest Soil	SDMPIEQSPRFYMAVNLKTAAALGISLSDVFVARANEVRE*
Ga0126370_103423693	3300010358	Tropical Forest Soil	IEQSPRFYMAVNLKTAALLGVSLSDVFIARADEVIE*
Ga0126372_108815043	3300010360	Tropical Forest Soil	SDMPIEQSPRFYMAVNLKTAASLGVSLSDVFVARANEVRE*
Ga0126377_102125171	3300010362	Tropical Forest Soil	QSPRFYMAVNLKAAAALGVSLSDVFVARANEVIE*
Ga0126379_100319391	3300010366	Tropical Forest Soil	MPIEQSPRFYMAVNLKTAASLGVSLSDAFIARANEVIE*
Ga0126379_111069772	3300010366	Tropical Forest Soil	QSPRFYMAVNLKTAAALGVSLSDVFIARANEVRE*
Ga0126381_1013695431	3300010376	Tropical Forest Soil	SDMPIEQSPRFYMAVNLKTAASLGISLSDVFVARANEVRE*
Ga0126383_112957661	3300010398	Tropical Forest Soil	IEQSPRFYMAVNLKAAASLGISLSDVFVARANEVRE*
Ga0126383_116606431	3300010398	Tropical Forest Soil	KQSVRVHLAVNLKTAASLGVSLSDAFVARADEVIE*
Ga0137383_106037411	3300012199	Vadose Zone Soil	DMPIEQSPRFYMAVNLKTAASLGISLSDVLVARANEVRE*
Ga0137363_105702151	3300012202	Vadose Zone Soil	IEQSPRFYMAVNLKTAALLGVSLSDVFIARANEVRE*
Ga0137363_110408342	3300012202	Vadose Zone Soil	PPIEQSPRFYMAVNLKTAASLGVSLSDVFIARANEVIE*
Ga0137362_103425592	3300012205	Vadose Zone Soil	PIEQSPRFYMAVNLKTAASLGVSLSGVFIARANEVRE*
Ga0137362_104878582	3300012205	Vadose Zone Soil	EQSPRFYMAVNLKTAASLGVSLSDVFVARANEVRE*
Ga0137378_111499451	3300012210	Vadose Zone Soil	QSPRFYMAVNLKAAASLGVSLSDVFVARANEVRE*
Ga0137377_118525701	3300012211	Vadose Zone Soil	DMPIEQSPRFYMAVNLKTAALLGIPLSDVFIARANEVRE*
Ga0137369_102310471	3300012355	Vadose Zone Soil	IEQSPRFYMAVNLKTAGLLGVSLSDVFVARANEVRE*
Ga0137384_103490771	3300012357	Vadose Zone Soil	SDMPIEQSPRCYMAVNLKTASLLGVSLSAVFIARANEVCE*
Ga0137360_102162871	3300012361	Vadose Zone Soil	MPIEQSPRFYMAVNLKTAASLGVSLSDVFIARANEVRE*
Ga0137361_119652501	3300012362	Vadose Zone Soil	MPIEQSPRFYMAVNLKTAASIGASLSDVFIARANEVIE*
Ga0126375_106851091	3300012948	Tropical Forest Soil	KPSDTPIEQSPRFYMAVNLKTAASLGVSLSDVFVARANEVRE*
Ga0126375_108509821	3300012948	Tropical Forest Soil	EQSPRFYMAVNLKTAASIGVALPDVFVARANEVRE*
Ga0164303_104248611	3300012957	Soil	EQSPRFYMAVNLKTAASLGVSLSDVFIARANEVRE*
Ga0126369_129407231	3300012971	Tropical Forest Soil	QSVRVHLAVNLKTAASLGVSLSDAFVARADEVIE*
Ga0164306_115011201	3300012988	Soil	MPIEQSLRFHMAVNLKTAASLGVSLSDSFVARANEVRE*
Ga0134073_103447821	3300015356	Grasslands Soil	QSPRFYMAVNLKTAASLGVSLTDVFIARANEVIE*
Ga0132256_1006832102	3300015372	Arabidopsis Rhizosphere	MPIEQSPRFYMAVNLKTAASLGISLSDAFIARANEVIE*
Ga0132257_1043493661	3300015373	Arabidopsis Rhizosphere	QSSRFHMAVNLKTAASLGISLSDAFVARADEVRE*
Ga0182036_113321041	3300016270	Soil	MPIEQSPRFYMAVNLKTAALLGVSLSDVFIARANEVIE
Ga0182036_116779861	3300016270	Soil	EQSPRFYMAVNLKTAASIGVALPDVFVARANEVRE
Ga0182041_103134613	3300016294	Soil	SEMPIEQSPRFYMAVNLKAAALLGVSLSDVFVARANEVIE
Ga0182033_107742392	3300016319	Soil	EQSPRFYMAVNLKTAAALGVSLSDVFVARANEVRE
Ga0182035_101677283	3300016341	Soil	AKPSDMPIEQSPRFYMAVNLKAAASLGVSFSDVFVARANEVRE
Ga0182032_108375992	3300016357	Soil	SDMPIEQSPRFYMGVNLKTAASLGISLSDVFIARANEVRE
Ga0182032_110798731	3300016357	Soil	KPSDMPIEQSPRFYMAVNLKAAASLGISLSDVFVARANEVRE
Ga0182034_111673841	3300016371	Soil	MPIEQSPRFYMAINLKAAASLGVSLSDVFIARANEVRE
Ga0182034_118690612	3300016371	Soil	DLRIAQSSRFHMAVNLKTAAALGITLSDRFVARADEVRE
Ga0182040_111780042	3300016387	Soil	PIEQSPRFYMAVNLKAAASLGISLSDVFVAPANEVRE
Ga0182040_116770561	3300016387	Soil	DMPIEQSPRFYMGVNLKTAASLGISLSDVFIARANEVRE
Ga0182037_104343834	3300016404	Soil	DMPIEQSPRFYMAVNLKTAASLGVSLSDVFIARANGVRE
Ga0066669_102329031	3300018482	Grasslands Soil	DMPIEQSPRFYMAVNLKTAASLGVSLTDVFIARANEVIE
Ga0210406_109497852	3300021168	Soil	DMPIEQSPRFYMAVNLKTAASLGISLSDAFTARANEVRE
Ga0213878_101167892	3300021444	Bulk Soil	EQSPRFYMAVNLKAAASLGISLSDVFVARANEVRE
Ga0210410_116597182	3300021479	Soil	MPIEQSPRFYMAVNLKTAASLGISLSDAFIARANEVRE
Ga0207685_106860992	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	SDMPIEQSPRFYMAVNLKGAASLGISLSDVFVARANEVRE
Ga0207693_101857503	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	SDMPIEQSPRFYMAVNLKTAASLGVSLSDVFIARANEVRE
Ga0207700_111355312	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	EQSPRFYMAVNLKAAALLGVSLSDVFVARANEVIE
Ga0209240_11461402	3300026304	Grasslands Soil	EQSPRFYMAVNLKTATSLGVSLSDVFIARANEVIE
Ga0257168_11444861	3300026514	Soil	EMPIEQSPRFYMAVNLKAAALLGVSLSDVFVARANEVIE
Ga0209474_106300741	3300026550	Soil	PIEQSPRFYMGVNLKTAALLGVSLSDVFIARANEVRE
Ga0209648_100647181	3300026551	Grasslands Soil	IEQSPRFYMGVNLKMAASLGVSLSDVFIARANEVRE
Ga0209106_11208462	3300027616	Forest Soil	KPSEMPIEQSLRFHMAVNLNTAASLGVSLSDSFVARANEVRE
Ga0209465_105477042	3300027874	Tropical Forest Soil	IEQSPRFYMAVNLKTAASIGVSLSDVFVARANEVRE
Ga0209415_100716882	3300027905	Peatlands Soil	MRPPHFDMAINLKTAASLGIVLPPSFTARTDEVIE
Ga0307311_100579882	3300028716	Soil	EMPIEQSLRFHMAVNLKTAASLGVSLSDSFVARANEVRE
Ga0307288_104597381	3300028778	Soil	PIEQSLRFHMAVNLKTAASLGVSLSDSFVARANEVRE
Ga0308194_102857502	3300031421	Soil	IEQSLRFHMAVNLKTAASLGVSLSDSFVARANEVRE
Ga0318516_108718251	3300031543	Soil	DMPIEQSPRFYMGVNLKTAASLGVSLTDVFIARANEVIE
Ga0318541_102567201	3300031545	Soil	IEQSPRFYMAVNLKAAASLGISLSDVFVARANEVRE
Ga0318538_106501581	3300031546	Soil	SHMPIEQSPRFYMAVNLKTAASLGVSLSDVFIARANEVRE
Ga0318538_106647362	3300031546	Soil	MPIEQSPRFYMAVNLKTAASLGISLSDVFIARANEVRE
Ga0318571_102085062	3300031549	Soil	EQSPRFYMAVNLKTAASLGVSLSDVFIARANEVIE
Ga0306917_101841643	3300031719	Soil	EQSPRFYMAVNLKTAALLGVSLSDVFVARANEVRE
Ga0306917_101846241	3300031719	Soil	PSEMPIEQSPRFHMAVNLKAAALLGVSLSDVFVARANEVIE
Ga0318543_103285901	3300031777	Soil	MPIEQSPRFYMAVNLKTAALLGISLSDVFVARANEVRE
Ga0318550_105985452	3300031797	Soil	PIEQSPRFYMAVNLKTAASLGVSLSDVFVARANEVRE
Ga0318523_101769041	3300031798	Soil	MPIEQSPRFYMAVNLKTAALLGVSLSDVFIARANEVRE
Ga0310917_100397177	3300031833	Soil	DMPIEQSPRFYMAVNLKAAASLGISLSDVFVARANEVRE
Ga0310917_101202703	3300031833	Soil	EQSPRFYMAVNLKTAASLGISLSDVFVARANEVRE
Ga0310917_104458132	3300031833	Soil	PIEQSPRFYMAVNLKTAASLGISLSDVFVARANEVRE
Ga0318495_100990581	3300031860	Soil	SDMPIEQSPRFYMAVNLKAAASLGVSFSDVFVARANEVRE
Ga0306925_101062281	3300031890	Soil	IEQSPRFYMAVNLKTAASLGVSLSDVFVARANEVRE
Ga0306925_101672541	3300031890	Soil	IEQSPRFYMSVNLKTAASLGVSLSDVFVARANEVIE
Ga0306925_111040821	3300031890	Soil	EQSPRFYMAVNLKTAALLGVSLSDVFIARANEVRE
Ga0318522_101999371	3300031894	Soil	DMPIEQSPRFYMAVNLKTAASLGISLSDVFVARANEVRE
Ga0318551_102998422	3300031896	Soil	SDMPIEQSPRFYMAINLKTAASLGVSLSDVFIARANEVRE
Ga0306921_100222101	3300031912	Soil	PSDMPIEQSPRFYMAVNLKAAASLGISLSDVFVARANEVRE
Ga0306921_103959221	3300031912	Soil	MPIEQSPRFHMAVNLKAAALLGVSLSDVFVARANEVIE
Ga0310912_110311961	3300031941	Soil	DMPIEQSPRFYMAVNLKTAAALGVSLSDVFVARANEVRE
Ga0310916_103299263	3300031942	Soil	EQSPRFYMGVNLKTAASLGISLSDVFIARANEVRE
Ga0310910_102129911	3300031946	Soil	MPIEQSPRFYMAVNLKTAASLGVALPDVFVARANEVRE
Ga0310910_105408104	3300031946	Soil	IEQSPRFYMAINLKTAAFLGVSLSDVFIARANEVRE
Ga0310909_104513981	3300031947	Soil	KPSDMPIEQSPRFYMGVNLKTAALLGVSLSDVFIARANEVRE
Ga0318559_105999791	3300032039	Soil	IEQSPRFYMAVNLKTAASLGISLSDVLVARANEVRE
Ga0318504_103558182	3300032063	Soil	EQSPRFYMAVNLKTTASLGVSLSDVFIARANEVIE
Ga0318510_103714201	3300032064	Soil	SDMPIEQSPRFYMAVNLKAAASLGISLSDVFVARANEVRE
Ga0318524_107952062	3300032067	Soil	EMPIEQSPRFFMAVNLKAAALLGVSLSDVLVARANEVIE
Ga0306924_103666843	3300032076	Soil	EQSPRFYMAVNLKTAASLGVSLSDVFVARANEVRE
Ga0306924_104216822	3300032076	Soil	PSEMPIEQSPRFYMAVNLKAAALLGVSLSDVFVARANEVIE
Ga0306924_105551041	3300032076	Soil	EQSLRFHMAVNLKTAALLGVSLSDAFVARADEVIE
Ga0306924_108628182	3300032076	Soil	SDMPIQQSPRFYMAVNLKTAALLGVSLSDVFIARANEVRE
Ga0306920_1007710824	3300032261	Soil	PPDTPIEQSPRFYMAVNLKTAASLGVSLSDVFVARANEVRE

Hidden Markov Model


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