Metagenome / Metatranscriptome Family F070407

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F070407
Family Type	Metagenome / Metatranscriptome
Number of Sequences	123
Average Sequence Length	51 residues
Representative Sequence	NPKQVGQLYREWYAIADVIHVRSGAAHAEWTAPHPPAGVTIEESRAAARA
Number of Associated Samples	108
Number of Associated Scaffolds	123

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.44 %
% of genes near scaffold ends (potentially truncated)	97.56 %
% of genes from short scaffolds (< 2000 bps)	87.80 %
Associated GOLD sequencing projects	102
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (90.244 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (11.382 % of family members)
Environment Ontology (ENVO)	Unclassified (23.577 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (65.041 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 24.36% β-sheet: 2.56% Coil/Unstructured: 73.08%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 123 Family Scaffolds
PF00920	ILVD_EDD	76.42
PF01144	CoA_trans	0.81
PF02569	Pantoate_ligase	0.81
PF02368	Big_2	0.81
PF13349	DUF4097	0.81
PF00330	Aconitase	0.81
PF00005	ABC_tran	0.81
PF10282	Lactonase	0.81
PF13646	HEAT_2	0.81

COG ID	Name	Functional Category	% Frequency in 123 Family Scaffolds
COG0129	Dihydroxyacid dehydratase/phosphogluconate dehydratase	Carbohydrate transport and metabolism [G]	152.85
COG0414	Panthothenate synthetase	Coenzyme transport and metabolism [H]	0.81
COG1788	Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit	Lipid transport and metabolism [I]	0.81
COG2057	Acyl-CoA:acetate/3-ketoacid CoA transferase, beta subunit	Lipid transport and metabolism [I]	0.81
COG4670	Acyl CoA:acetate/3-ketoacid CoA transferase	Lipid transport and metabolism [I]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	90.24 %
Unclassified	root	N/A	9.76 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	90.24 %
Unclassified	root	N/A	9.76 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	90.24 %
Unclassified	root	N/A	9.76 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	56.91 %
Unclassified	root	N/A	9.76 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	8.94 %
Calditrichaeota	phylum	All Organisms → cellular organisms → Bacteria → Calditrichaeota	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	9.76 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	5.69 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.63 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.81 %
Calditrichia	class	All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	9.76 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.69 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.63 %
Calditrichales	order	All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales	0.81 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	9.76 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.69 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1.63 %
Calditrichaceae	family	All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae	0.81 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	9.76 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.69 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	1.63 %
Caldithrix	genus	All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae → Caldithrix	0.81 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	9.76 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.69 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	1.63 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	0.81 %
Caldithrix abyssi	species	All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae → Caldithrix → Caldithrix abyssi	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	9.76 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.69 %
Mycobacterium tuberculosis complex	species group	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex	1.63 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	0.81 %
Caldithrix abyssi	species	All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae → Caldithrix → Caldithrix abyssi	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	9.76 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.69 %
Mycobacterium tuberculosis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	1.63 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	0.81 %
Caldithrix abyssi	species	All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae → Caldithrix → Caldithrix abyssi	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001137\|JGI12637J13337_1017000	All Organisms → cellular organisms → Bacteria → Terrabacteria group	634	Open in IMG/M
3300002245\|JGIcombinedJ26739_100313609	Not Available	1452	Open in IMG/M
3300004092\|Ga0062389_100903783	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1066	Open in IMG/M
3300004152\|Ga0062386_100068899	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2686	Open in IMG/M
3300004152\|Ga0062386_100364023	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1160	Open in IMG/M
3300005177\|Ga0066690_10830695	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
3300005337\|Ga0070682_101362348	All Organisms → cellular organisms → Bacteria → Terrabacteria group	605	Open in IMG/M
3300005434\|Ga0070709_10009825	All Organisms → cellular organisms → Bacteria	5286	Open in IMG/M
3300005436\|Ga0070713_100050064	All Organisms → cellular organisms → Bacteria	3449	Open in IMG/M
3300005437\|Ga0070710_10153751	Not Available	1421	Open in IMG/M
3300005458\|Ga0070681_10356990	Not Available	1372	Open in IMG/M
3300005534\|Ga0070735_10423961	All Organisms → cellular organisms → Bacteria → Terrabacteria group	796	Open in IMG/M
3300005538\|Ga0070731_10037617	All Organisms → cellular organisms → Bacteria	3253	Open in IMG/M
3300005538\|Ga0070731_10221633	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1256	Open in IMG/M
3300005541\|Ga0070733_10970145	All Organisms → cellular organisms → Bacteria → Terrabacteria group	571	Open in IMG/M
3300005541\|Ga0070733_11138886	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300005569\|Ga0066705_10398858	All Organisms → cellular organisms → Bacteria → Terrabacteria group	862	Open in IMG/M
3300005598\|Ga0066706_11336093	All Organisms → cellular organisms → Bacteria → Terrabacteria group	541	Open in IMG/M
3300005610\|Ga0070763_10137743	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1265	Open in IMG/M
3300005712\|Ga0070764_10573269	All Organisms → cellular organisms → Bacteria → Terrabacteria group	686	Open in IMG/M
3300005764\|Ga0066903_100781244	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	1703	Open in IMG/M
3300005764\|Ga0066903_100785763	Not Available	1699	Open in IMG/M
3300005764\|Ga0066903_102979459	All Organisms → cellular organisms → Bacteria → Terrabacteria group	918	Open in IMG/M
3300005886\|Ga0075286_1016978	All Organisms → cellular organisms → Bacteria → Terrabacteria group	896	Open in IMG/M
3300005921\|Ga0070766_10909494	All Organisms → cellular organisms → Bacteria → Terrabacteria group	603	Open in IMG/M
3300006028\|Ga0070717_10116863	All Organisms → cellular organisms → Bacteria	2281	Open in IMG/M
3300006052\|Ga0075029_100983758	All Organisms → cellular organisms → Bacteria → Terrabacteria group	582	Open in IMG/M
3300006055\|Ga0097691_1175209	All Organisms → cellular organisms → Bacteria → Terrabacteria group	560	Open in IMG/M
3300006175\|Ga0070712_100300318	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1299	Open in IMG/M
3300006797\|Ga0066659_10435406	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1039	Open in IMG/M
3300006806\|Ga0079220_11549007	All Organisms → cellular organisms → Bacteria → Terrabacteria group	571	Open in IMG/M
3300009524\|Ga0116225_1367723	All Organisms → cellular organisms → Bacteria → Terrabacteria group	640	Open in IMG/M
3300009672\|Ga0116215_1190374	All Organisms → cellular organisms → Bacteria → Terrabacteria group	905	Open in IMG/M
3300009683\|Ga0116224_10654652	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	503	Open in IMG/M
3300009698\|Ga0116216_10303083	All Organisms → cellular organisms → Bacteria → Terrabacteria group	973	Open in IMG/M
3300009698\|Ga0116216_10539557	All Organisms → cellular organisms → Bacteria → Terrabacteria group	704	Open in IMG/M
3300009824\|Ga0116219_10312806	All Organisms → cellular organisms → Bacteria → Terrabacteria group	884	Open in IMG/M
3300010359\|Ga0126376_11488170	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
3300010361\|Ga0126378_10010949	All Organisms → cellular organisms → Bacteria	7424	Open in IMG/M
3300010361\|Ga0126378_11959591	All Organisms → cellular organisms → Bacteria → Terrabacteria group	667	Open in IMG/M
3300010366\|Ga0126379_12973316	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300010398\|Ga0126383_11731028	All Organisms → cellular organisms → Bacteria	714	Open in IMG/M
3300010863\|Ga0124850_1002057	All Organisms → cellular organisms → Bacteria	5798	Open in IMG/M
3300011120\|Ga0150983_11280721	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300012210\|Ga0137378_11301827	All Organisms → cellular organisms → Bacteria → Terrabacteria group	643	Open in IMG/M
3300012496\|Ga0157353_1028017	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300012923\|Ga0137359_11298297	All Organisms → cellular organisms → Bacteria → Terrabacteria group	616	Open in IMG/M
3300012957\|Ga0164303_11008917	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300012971\|Ga0126369_11367997	All Organisms → cellular organisms → Bacteria	798	Open in IMG/M
3300012988\|Ga0164306_12020971	Not Available	501	Open in IMG/M
3300014156\|Ga0181518_10147959	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1261	Open in IMG/M
3300014158\|Ga0181521_10623169	Not Available	503	Open in IMG/M
3300015265\|Ga0182005_1054187	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1092	Open in IMG/M
3300016270\|Ga0182036_10311603	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1201	Open in IMG/M
3300016422\|Ga0182039_11763804	Not Available	567	Open in IMG/M
3300017948\|Ga0187847_10230062	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1010	Open in IMG/M
3300017955\|Ga0187817_10663507	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300017961\|Ga0187778_10186644	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1318	Open in IMG/M
3300017972\|Ga0187781_11271153	Not Available	542	Open in IMG/M
3300017973\|Ga0187780_10276584	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1179	Open in IMG/M
3300017995\|Ga0187816_10164730	All Organisms → cellular organisms → Bacteria → Terrabacteria group	961	Open in IMG/M
3300017995\|Ga0187816_10506794	Not Available	544	Open in IMG/M
3300018006\|Ga0187804_10232117	All Organisms → cellular organisms → Bacteria → Terrabacteria group	794	Open in IMG/M
3300018006\|Ga0187804_10351194	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300018043\|Ga0187887_10353837	All Organisms → cellular organisms → Bacteria → Terrabacteria group	867	Open in IMG/M
3300018060\|Ga0187765_10265212	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1017	Open in IMG/M
3300018062\|Ga0187784_10817379	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	743	Open in IMG/M
3300018064\|Ga0187773_11167459	All Organisms → cellular organisms → Bacteria → Terrabacteria group	515	Open in IMG/M
3300018085\|Ga0187772_10649612	All Organisms → cellular organisms → Bacteria → Terrabacteria group	753	Open in IMG/M
3300018085\|Ga0187772_11121079	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300018086\|Ga0187769_11371090	All Organisms → cellular organisms → Bacteria → Terrabacteria group	535	Open in IMG/M
3300018090\|Ga0187770_11809088	All Organisms → cellular organisms → Bacteria → Terrabacteria group	500	Open in IMG/M
3300019242\|Ga0181502_1090476	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300019888\|Ga0193751_1000660	All Organisms → cellular organisms → Bacteria	25351	Open in IMG/M
3300020579\|Ga0210407_10452514	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1004	Open in IMG/M
3300020580\|Ga0210403_10101642	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2331	Open in IMG/M
3300020582\|Ga0210395_11445635	All Organisms → cellular organisms → Bacteria → Terrabacteria group	501	Open in IMG/M
3300021088\|Ga0210404_10294744	All Organisms → cellular organisms → Bacteria → Terrabacteria group	891	Open in IMG/M
3300021401\|Ga0210393_10365845	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1175	Open in IMG/M
3300021402\|Ga0210385_10121568	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1843	Open in IMG/M
3300021403\|Ga0210397_10728278	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M
3300021406\|Ga0210386_10448235	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1114	Open in IMG/M
3300021406\|Ga0210386_10941058	All Organisms → cellular organisms → Bacteria → Terrabacteria group	739	Open in IMG/M
3300021407\|Ga0210383_11306237	All Organisms → cellular organisms → Bacteria → Terrabacteria group	606	Open in IMG/M
3300021420\|Ga0210394_10997654	All Organisms → cellular organisms → Bacteria → Terrabacteria group	725	Open in IMG/M
3300021433\|Ga0210391_10661545	All Organisms → cellular organisms → Bacteria → Terrabacteria group	819	Open in IMG/M
3300021477\|Ga0210398_10876973	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300025604\|Ga0207930_1056125	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	970	Open in IMG/M
3300025604\|Ga0207930_1088773	All Organisms → cellular organisms → Bacteria → Terrabacteria group	717	Open in IMG/M
3300025898\|Ga0207692_10174543	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1248	Open in IMG/M
3300025906\|Ga0207699_10611352	All Organisms → cellular organisms → Bacteria → Terrabacteria group	794	Open in IMG/M
3300025928\|Ga0207700_10041809	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3356	Open in IMG/M
3300027035\|Ga0207776_1006144	All Organisms → cellular organisms → Bacteria	1844	Open in IMG/M
3300027590\|Ga0209116_1123030	All Organisms → cellular organisms → Bacteria → Terrabacteria group	569	Open in IMG/M
3300027727\|Ga0209328_10111894	All Organisms → cellular organisms → Bacteria → Terrabacteria group	834	Open in IMG/M
3300027812\|Ga0209656_10080897	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	1748	Open in IMG/M
3300027869\|Ga0209579_10061999	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1981	Open in IMG/M
3300027895\|Ga0209624_10527044	All Organisms → cellular organisms → Bacteria → Terrabacteria group	786	Open in IMG/M
3300027898\|Ga0209067_10420714	All Organisms → cellular organisms → Bacteria → Terrabacteria group	750	Open in IMG/M
3300027908\|Ga0209006_10886722	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300027911\|Ga0209698_10020677	All Organisms → cellular organisms → Bacteria → Acidobacteria	6252	Open in IMG/M
3300027911\|Ga0209698_10738006	All Organisms → cellular organisms → Bacteria	747	Open in IMG/M
3300027911\|Ga0209698_11398121	All Organisms → cellular organisms → Bacteria → Terrabacteria group	510	Open in IMG/M
3300028047\|Ga0209526_10869191	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300029636\|Ga0222749_10212071	All Organisms → cellular organisms → Bacteria → Terrabacteria group	972	Open in IMG/M
3300030494\|Ga0310037_10166439	All Organisms → cellular organisms → Bacteria → Terrabacteria group	993	Open in IMG/M
3300030659\|Ga0316363_10164594	All Organisms → cellular organisms → Bacteria → Terrabacteria group	943	Open in IMG/M
3300030707\|Ga0310038_10281770	All Organisms → cellular organisms → Bacteria → Terrabacteria group	757	Open in IMG/M
3300030763\|Ga0265763_1028199	All Organisms → cellular organisms → Bacteria	626	Open in IMG/M
3300031028\|Ga0302180_10241305	All Organisms → cellular organisms → Bacteria → Terrabacteria group	953	Open in IMG/M
3300031474\|Ga0170818_113336315	Not Available	565	Open in IMG/M
3300031823\|Ga0307478_10788960	All Organisms → cellular organisms → Bacteria → Terrabacteria group	795	Open in IMG/M
3300032001\|Ga0306922_10569029	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1203	Open in IMG/M
3300032001\|Ga0306922_11645745	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300032160\|Ga0311301_11434840	All Organisms → cellular organisms → Bacteria → Terrabacteria group	857	Open in IMG/M
3300032770\|Ga0335085_11113680	All Organisms → cellular organisms → Bacteria → Terrabacteria group	845	Open in IMG/M
3300032783\|Ga0335079_10010279	All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae → Caldithrix → Caldithrix abyssi	10656	Open in IMG/M
3300032805\|Ga0335078_10500244	Not Available	1562	Open in IMG/M
3300032828\|Ga0335080_10338718	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1625	Open in IMG/M
3300032893\|Ga0335069_10100908	All Organisms → cellular organisms → Bacteria → Acidobacteria	3646	Open in IMG/M
3300033134\|Ga0335073_12027252	Not Available	525	Open in IMG/M
3300033405\|Ga0326727_10141862	All Organisms → cellular organisms → Bacteria	2885	Open in IMG/M
3300034065\|Ga0334827_006052	All Organisms → cellular organisms → Bacteria → Acidobacteria	5624	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.19%
Host-Associated	Host-Associated	0.81%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.74%
Aquatic	Environmental → Aquatic	15.45%
Plants	Host-Associated → Plants	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.30%
Freshwater	Environmental → Aquatic → Freshwater	11.38%
Sediment	Environmental → Aquatic → Sediment	4.06%
Peat	Environmental → Terrestrial → Peat	2.44%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.34%
Loam	Environmental → Terrestrial → Soil → Loam	21.14%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	13.82%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	11.38%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.06%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.44%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.58%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	16.26%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	13.82%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.01%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.13%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	7.32%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	4.06%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.06%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.25%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.44%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.44%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.38%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	8.13%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	8.13%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.50%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.50%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.88%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	4.88%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.88%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	4.06%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	4.06%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.06%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.25%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.25%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.25%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.25%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.44%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	2.44%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.44%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.63%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.63%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.63%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.81%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.81%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.81%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.81%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.81%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.81%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001137	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005886	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_205	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006055	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012496	Unplanted soil (control) microbial communities from North Carolina - M.Soil.4.yng.090610	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014158	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG	Environmental	Open in IMG/M
3300015265	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300019242	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300025604	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027035	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 30 (SPAdes)	Environmental	Open in IMG/M
3300027590	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O1 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300030659	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300030763	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031028	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033405	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY	Environmental	Open in IMG/M
3300034065	Peat soil microbial communities from Stordalen Mire, Sweden - 714 S1 1-5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12637J13337_10170001	3300001137	Forest Soil	ADVIKVSSGMAQAAEWVATRPPAGVAIEGALAAAGA*
JGIcombinedJ26739_1003136091	3300002245	Forest Soil	GQLYREWYSIADVIHVGSGAAHTQTWTGHHPPAGVAIEEARSAARA*
Ga0062389_1009037831	3300004092	Bog Forest Soil	TLALEANPKQVGQLFREWYSIADVTHVGAGVVQTAEWAAPHRPAAVGLEEARAARA*
Ga0062386_1000688991	3300004152	Bog Forest Soil	DGHHQATLLLDVTPKQVGQLYREWYAIADVIHVGSGAAHAEPWNGPHPPAGVSLESRPAARA*
Ga0062386_1003640232	3300004152	Bog Forest Soil	VGQLYREWYAIADVIHVGSGAAQAAPWNGAHPPAGVTLESRPAARA*
Ga0066690_108306952	3300005177	Soil	KQVGQLYREWYSIADVVHVGAGRAAEWSTPHPPAGVTQEEARSAARA*
Ga0070682_1013623481	3300005337	Corn Rhizosphere	HQVMLTLEVNQKQVGQLYREWYGIPDVIRVGSGAAHTTAWSSHHPPAGVTLEESRPAARA
Ga0070709_100098251	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	DVNAKQVGQLYREWYSIADVIHVGAGTLHSDAWAGPHPPSGVSLEEQRAAARA*
Ga0070713_1000500641	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	QVTLVLNVNAKQVGQLYREWYSIADVIHVGPGAAHTDEWMGHHPPAGVSIETQRAAAQA*
Ga0070710_101537512	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	REWYSIADVIKVSSGAAQPADWSSPHPPAGVSIDGSRPAARA*
Ga0070681_103569901	3300005458	Corn Rhizosphere	QLYREWYGIPDVIRVGSGAAHTTTWTSHHPPAGVTLDESRPAARA*
Ga0070735_104239612	3300005534	Surface Soil	SGHLVTLSLDVNQKQIGQLYREWHSIVDVIHVGSGAVQSQAWSSPHPPAGVTIEEARAAARA*
Ga0070731_100376174	3300005538	Surface Soil	VGQLYREWYSIADVIQVSNSAAYANAWTGPHPPTGVPLEDSRAARA*
Ga0070731_102216332	3300005538	Surface Soil	EWYSIADVIHVGSGAAHPAAWATHHPPTGVTLEESRAAARA*
Ga0070733_109701451	3300005541	Surface Soil	EWYSISDVIHVGAGRAAEWSAPHPPAGVTPEEARSAARA*
Ga0070733_111388862	3300005541	Surface Soil	LYREWYAIADVIHVGAGAAHEVAWGSPHPPAGVALEDSRTAARA*
Ga0066705_103988581	3300005569	Soil	GQLYREWYGIPDVIRVGSGAAHTTTWTSHHPPAGVTLDESRPAARA*
Ga0066706_113360931	3300005598	Soil	EWYSIADVIKVSSGAAHATPWASAHPPTGVSIEESRAVARA*
Ga0070763_101377431	3300005610	Soil	QLYREWYAIADVIEVSSGAAHAAEWTAAHPPASVTVTIEESRAAARA*
Ga0070764_105732691	3300005712	Soil	AIADVIKVSSGAAHAAEWTAAHPPASVTVTIEESRAAARA*
Ga0066903_1007812441	3300005764	Tropical Forest Soil	VGQLYREWYSIADVTHVGAGTLHSDAWAGPHPPSGVTIEQQRAAARA*
Ga0066903_1007857631	3300005764	Tropical Forest Soil	VNQKQVGQLFREWYAIADVIHVASGAAQAVAWSSPHPPTGVNIEEARATARA*
Ga0066903_1029794591	3300005764	Tropical Forest Soil	QKQVGQLFREWYAIADVIQVASGAVQSVPWTSSHPPSGVTIEEARATARA*
Ga0075286_10169781	3300005886	Rice Paddy Soil	AIPDVIRVGSGAAHSASWSAHHAPAGVGLEDSRPAARA*
Ga0070766_109094941	3300005921	Soil	ALEVNQKQVGQLFREWYSVADVIKVSTGAASDAAWSGPHPPAGVAMEEARAAARA*
Ga0070717_101168633	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	TLALDVNQKQVGQLYREWYSIADVIKVSSGAGHPGAWANPHPPAGVALEESRAAARA*
Ga0075029_1009837581	3300006052	Watersheds	DVVKVGSGAAPATAWTAPHPPAAVSIDDSRAAARA*
Ga0097691_11752092	3300006055	Arctic Peat Soil	QLYREWYGIADVIKVSSGSGHASTWTGAHPPAGVSIEESRAAARA*
Ga0070712_1003003181	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	REWYGIPDVIRVGSGAAHTTTWTSHHPPAGVTLDESRPAARA*
Ga0066659_104354062	3300006797	Soil	LYREWYAIPDVIHVGSGPAQAAEWNSSHPPAGVSIDSPRASARA*
Ga0079220_115490072	3300006806	Agricultural Soil	NPKQVGQLYREWYAIADVIHVRSGAAHAEWTAPHPPAGVTIEESRAAARA*
Ga0116225_13677231	3300009524	Peatlands Soil	GQLYREWYAIADVIKVSSGTGHATAWTAPHPPAGVAMEESRTAARA*
Ga0116215_11903742	3300009672	Peatlands Soil	TLALEVNQKQVGQLYREWYAIADVIKVSSGTGHATAWTAPHPPAGVPLEESRAAARA*
Ga0116224_106546521	3300009683	Peatlands Soil	NPKQVGQLFREWYSIADVTVVRAGSAPTAEWAVPHPPEGVGIESRTVVRA*
Ga0116216_103030832	3300009698	Peatlands Soil	GQLYREWYAIADVIKVSSGTGHAAAWTAPHPPAGVPLEESRAAARA*
Ga0116216_105395571	3300009698	Peatlands Soil	VNQKQVGQLYREWYAIADVIKVSSGAAHTAEWTAPHPPAGVTMEESRAAARA*
Ga0116219_103128061	3300009824	Peatlands Soil	NQKQVGQLYREWYAIADVIKVSSGTGHATAWTAPHPPAGVAMEESRTAARA*
Ga0126376_114881701	3300010359	Tropical Forest Soil	AEQGENDHQVTLILDVNAKQVGQLYREWYSIADVTHVGAGTLHSDAWAGPHPPSGVTIEQQRAAARA*
Ga0126378_100109491	3300010361	Tropical Forest Soil	EHDHQATLVLEVNQKQVGQLFREWYAIADVIHVASGAAQTVPWSSPHPPSGVTMEEARATARA*
Ga0126378_119595911	3300010361	Tropical Forest Soil	VEHDHQARLVLDVNPKQVGQLYREWYAIADVIHVGSAPAPAAEWAAPHPPAGVTMDGSRPAARA*
Ga0126379_129733162	3300010366	Tropical Forest Soil	AQLYSEWYSLADVIKVGSGTAQNAWNSAHPPAGVTIEGSRAAARA*
Ga0126383_117310281	3300010398	Tropical Forest Soil	KQVGQLHREWYGIADVIHVGAGSVHSDAWTGHHPPSGVSIEQQRAAARA*
Ga0124850_10020571	3300010863	Tropical Forest Soil	DHQVTLILDVNAKQVRQLYREWYSIADVTHVGAGTLHSDAWAGPHPPSGVTIEQQRAAARA*
Ga0150983_112807212	3300011120	Forest Soil	TLVLDVNAKQVGQLYREWYSIADVIHVGAGTAHSDTWTGHHPPAGVSIEQSRSAARA*
Ga0137378_113018271	3300012210	Vadose Zone Soil	QVGQLYREWYSIPDVIHVGSGAAQANAWASHHPPAGVTIDESRAAARA*
Ga0157353_10280172	3300012496	Unplanted Soil	YREWYSIADVIKVGSGAAANVAWNSPHPPAGVSIEESRAAARA*
Ga0137359_112982971	3300012923	Vadose Zone Soil	EWYSIADVIKVSSGAAHAAEWTAPHPPAGVPMEDSRAAARA*
Ga0164303_110089172	3300012957	Soil	EWYSIADVIHVGPGAAHTDEWMGHHPPAGVSIETQRAAAQA*
Ga0126369_113679971	3300012971	Tropical Forest Soil	EVNQKQVGQLYREWYSIADVIKVGSGTAQNAWNSAHPPAGVTIEGSRAAARA*
Ga0164306_120209711	3300012988	Soil	EWYGIPDVIRVGSGAAHTTAWSSHHPPAGVTLEESRPAARA*
Ga0181518_101479591	3300014156	Bog	AAPAGHDHQVTIMLDVNSKQVGQLYREWCAIADVTHVGSGSAQAAEWTGPHPVAGVCIESRAAARA*
Ga0181521_106231691	3300014158	Bog	HDHQVTLALDVNQKQVGQLYRESYAIADVTKVSSGAAQTAEWTAPHPPAGVTMEESRSAARA*
Ga0182005_10541871	3300015265	Rhizosphere	EWYGMPDVIRVGSGAAQTTTWTSHHPPAGVALDESRPAARA*
Ga0182036_103116032	3300016270	Soil	GQLYREWYSIADVIKVGAGAAAAWSSAHPPTGVSIEESRAAARA
Ga0182039_117638041	3300016422	Soil	LDVNPKQVGQLCREWYAIADVMHVGSAPAQAAEWARPHPPAGVTMDGSLPAARA
Ga0187847_102300621	3300017948	Peatland	QKQVGQLYREWYSIADVIHVGSGAAHSSAWTSPHPPAGVAIEEARAAARA
Ga0187817_106635071	3300017955	Freshwater Sediment	QAGPAGRDHQVTVTLEVNAKQVGQLYREWYAIADVIHVRSGAAQTAEWTTPHPPAGVTIDSRAAARA
Ga0187778_101866441	3300017961	Tropical Peatland	EWYAIADVVHVRSAPAHSEAWVTAHPPTGVTLDEARSAARA
Ga0187781_112711531	3300017972	Tropical Peatland	VHAASAGQDHEVTLILDVNPKQVGQLYREWYAIADVVHVGSGAGHAAEWPGPHPVAGVCIESRAAARA
Ga0187780_102765843	3300017973	Tropical Peatland	GQLYREWYAIADVVHVGSGIAQAADWAGPHPVEGVCIESRAAARA
Ga0187816_101647301	3300017995	Freshwater Sediment	HLVTLALGVNQKQVGQLYREWYGIADVIKVSSGSGHTAAWTGSHPPTGVTIEESRAAARA
Ga0187816_105067942	3300017995	Freshwater Sediment	LDVNPKQVGQLYREWYSIADVIHVGSGAVQASAWSQAHPPAGVTIDESRAVARA
Ga0187804_102321172	3300018006	Freshwater Sediment	SKQVGQLYREWYAIADVTHVGSGSAQAAEWAGPHPVAGVCIESRTAARA
Ga0187804_103511942	3300018006	Freshwater Sediment	QKQVGQLYREWYSIADVIRVGSGAAPAAAWTSAHPPAAVTIEESRAAARA
Ga0187887_103538371	3300018043	Peatland	QLYREWYGIADVIKVSSGVAHAAQWTAPHPPAGVAIEDSRSAARA
Ga0187765_102652122	3300018060	Tropical Peatland	KQVGQLYREWYSIADVIHVGSGAAHASAWSQAHPPAGVTIEESRAAARA
Ga0187784_108173792	3300018062	Tropical Peatland	QVGQLYREWYAIADVVHVGSGAGHAAEWPGPHPVAGVCIESRAAARA
Ga0187773_111674591	3300018064	Tropical Peatland	EVNSKQVGQLYREWYAIADVIHVGSGSAQAAEWAGPHPVAGVCIESRAAARA
Ga0187772_106496121	3300018085	Tropical Peatland	LEVNPKQVGQLYREWYAIADVLDVRSCSAQAMEWTTPHPPAGVALEEQRAAARA
Ga0187772_111210791	3300018085	Tropical Peatland	VNPKQVGQLFREWYSIADVIHVRAGAAALEWTSPHPPMGVPTEESRTAARA
Ga0187769_113710901	3300018086	Tropical Peatland	EWYAIADVIHVGSGASQAAEWAGPHPVAGVCIESRAAARA
Ga0187770_118090882	3300018090	Tropical Peatland	KQVGQLCREWYAIADVVQVDSGLAQAAEWTGPHPVAGVCIESRAAARA
Ga0181502_10904763	3300019242	Peatland	VTLALDVNQKQVGQLYREWYGIADVIKVSSGVAHAAQWTAPHPPAGVAIEDSRSAARA
Ga0193751_100066012	3300019888	Soil	VALDVNQKQVGQLDREWYSIADVIEVSSGAHANAWTPALPPVGVAIEESRAAARA
Ga0210407_104525141	3300020579	Soil	NQKQVGQLYREWYGIADVIKVGSGTGHATAWTAAHPPAGVPIEESRAAARA
Ga0210403_101016423	3300020580	Soil	VTLALEVNQKQVGQLYREWYSIADVIKVSSGAARANAWSAPHPPAGVSIEESRAAALA
Ga0210395_114456351	3300020582	Soil	PKQVGQLFREWYSIMDVQHVATGASRDAEWTAPHPPAGITQEETRSAARA
Ga0210404_102947441	3300021088	Soil	HEHQVTLALDVNQKQVGQLYREWYGIADVIMVSSGTGHATAWAAHPPTGVAIEQSRSAAR
Ga0210393_103658451	3300021401	Soil	LDVNPKQVGQLHREWYSIMDVIEVRSGAAQAEWTAPHPPATVALEEQRAAARA
Ga0210385_101215682	3300021402	Soil	AAAEENDHQATLMLDVNPKQVGQLHREWYAITDVIAVRSGSGQNSEWTSAHPPATVALEEQRSAARA
Ga0210397_107282781	3300021403	Soil	YREWYSIMDVTHVGPGAEQAAEWSASHPPAGVSLGESRAAAGA
Ga0210386_104482351	3300021406	Soil	KQVGQLYREWYGIADVIMVSSGTGHATAWAAHPPTGVAIEGSRSAARA
Ga0210386_109410581	3300021406	Soil	QKQVGQLYREWYAIPDVIHVGSGPAQAAEWNSPHPPAGVSIDDPRASARA
Ga0210383_113062372	3300021407	Soil	EWYSIADVIHVGAGTAHSDTWTGHHPPAGVSIEQSRSAARA
Ga0210394_109976542	3300021420	Soil	DVIHVGAGTAHSDTWTGHHPPAGVSIEQSRSAARA
Ga0210391_106615451	3300021433	Soil	YAIADVIEVSSGAAHAAEWTAAHPPASVTVTIEESRAAARA
Ga0210398_108769731	3300021477	Soil	PSEHDHQVTLALEVNQKQVGQLFREWYSIADVIKVSSAPVAETWTAPHPPAGVAMEEARAAARA
Ga0207930_10561251	3300025604	Arctic Peat Soil	QLYREWYGIADVIKVSSGAAHTNAWALPHPPAGVAIEESRAAARA
Ga0207930_10887732	3300025604	Arctic Peat Soil	LYREWYGIADVIKVSSGAASAWAGPHPPAGVSIEESRAAARA
Ga0207692_101745431	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	VYREWYSIADVIKVSSGAAQPADWSSPHPPAGVSIDGSRPAARA
Ga0207699_106113521	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	DVNAKQVGQLYREWYSIADVIHVGAGTLHSDAWAGPHPPSGVSLEEQRAAARA
Ga0207700_100418095	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	DHQVTLVLNVNAKQVGQLYREWYSIADVIHVGPGAAHTDEWMGHHPPAGVSIETQRAAAQ
Ga0207776_10061442	3300027035	Tropical Forest Soil	VLDVNQKQVGQLYREWYAIADVIKVSSGAAQSAEWSSPHPPAGVAIDGSRPAARA
Ga0209116_11230301	3300027590	Forest Soil	LEVNQKQVGQLFREWYSIADVIQVSSGTAADTWSAPHPPAGVAMEEARSAARA
Ga0209328_101118941	3300027727	Forest Soil	SIADVIKVSSGMAQAAEWVATRPPAGVAIEGALAAAGA
Ga0209656_100808971	3300027812	Bog Forest Soil	TLLLDVTPKQVGQLYREWYAIADVIHVGSGAAQAAPWNGAHPPAGVTLESRPAARA
Ga0209579_100619991	3300027869	Surface Soil	ALDVNQKQVGQLYREWYSIADVIQVSNSAAYANAWTGPHPPTGVPLEDSRAARA
Ga0209624_105270441	3300027895	Forest Soil	DVNQKQVGQLYREWYSIADVVKVSPGAAHATAWTMPHPPAGVAIEESRAAARA
Ga0209067_104207142	3300027898	Watersheds	REWYAIADVIHVGSGAVQAAEWNSPHPPAGVSIDESRAAARA
Ga0209006_108867221	3300027908	Forest Soil	TLALDVNQKQVGQLYREWYSISDVIHVGAGRAAEWSAPHPPAGVTPEEARSAARA
Ga0209698_100206776	3300027911	Watersheds	LILDVNQKQVGQLYREWYAIADVIKVSSAPAQAAEWSSPHPPAGVTMDGSRPAARA
Ga0209698_107380062	3300027911	Watersheds	LSVNQKQIGQLFREWYAIADVIHVRSGAAQTAEWTTPHPPAGVPMGRAEARA
Ga0209698_113981212	3300027911	Watersheds	REWYAIADVIHVGSGAVQAAEWNSPHPPAGVSIDEPRAAARA
Ga0209526_108691912	3300028047	Forest Soil	QVTLALEVNQKQVGQLYREWYSIADVIKVSSGAAQANEWTTPHPPTSVPIEESRAARA
Ga0222749_102120712	3300029636	Soil	QLYREWYAIADVIKVSSGAAHAEAWTATAPHPPAGVPVDESRSAARA
Ga0310037_101664392	3300030494	Peatlands Soil	VTLALEVNQKQVGQLYREWYAIADVIKVSSGTGHAAAWTAPHPPAGVPLEESRAAARA
Ga0316363_101645941	3300030659	Peatlands Soil	YREWYGIADVIKVSSGTGHAAAWTAPHPPAGVPLEESRAAARA
Ga0310038_102817701	3300030707	Peatlands Soil	YQVTLTLNVNPKQVGQLYREWYAIADVIHVGAGSPQASEWAGPHPPAGVCIESRTAARA
Ga0265763_10281992	3300030763	Soil	SEHEHQVTLALDVNQKQVGQLYREWYGIADVIMVSSGTGHATAWAAHPPTGVAIEESRSAARA
Ga0302180_102413051	3300031028	Palsa	EHDHLVTLALEVNQKQVGQLYREWYGIADVIKVSSGAAQAPAWTTAHPPAGVAMEDARAAARA
Ga0170818_1133363152	3300031474	Forest Soil	DHQVTLVLEVNQKQVGQLYREWYAIADVIHVGSGPAQAAEWNSPHPPAGVSIDEPRASAR
Ga0307478_107889602	3300031823	Hardwood Forest Soil	QLYREWYSVADVIKVSSGAAHAAAWTAPHPPAGVAIEDSRKAARA
Ga0306922_105690292	3300032001	Soil	PKQVGQLYREWYAIADVIKVSSGAPQSAEWSSPHPPSGVDIDGSRAAARA
Ga0306922_116457452	3300032001	Soil	YAIADVTHVGSAPAQAAQWAAPHPPAGVTMEGSRPAARA
Ga0311301_114348402	3300032160	Peatlands Soil	PAEHDHQVTLALEVNQKQVGQLYREWYAIADVIKVSSGTGHATSWTAPHPPAGVPMEESRTAARA
Ga0335085_111136801	3300032770	Soil	LYREWYSIADVIKVSSGAAHTAPWATAHPPAGVTQEEARSAARA
Ga0335079_1001027910	3300032783	Soil	QATLLLDVNQKQVGQLYREWYAIADVIKVASGTAQAAEWNSPHPPAGVTIDGSRAAARA
Ga0335078_105002442	3300032805	Soil	DHQVTLMLDVNQKQVGQLYREWYSIADVTRVSSGAGHAAAWTSHHPPAGVTAEQSRAAAR
Ga0335080_103387181	3300032828	Soil	QLYREWYSITDVIQVGPGAARTDAWTGHHPPAGVSVETQRAAARA
Ga0335069_101009085	3300032893	Soil	EQDHQVTLVLDVNAKQVGQLYREWYSIADVVHVGPGAAHSDEWRGHHPPTGVSIETQRAAARA
Ga0335073_120272522	3300033134	Soil	TLTLDVNLKQVGQLYREWHSIADVIHVDAGAAHAAEWSSHHPPARVMVEESRAAARA
Ga0326727_101418623	3300033405	Peat Soil	QLYREWYAIADVIHVGSSSAHAAEWAGPHTVAGVCIESRAAARA
Ga0334827_006052_1_192	3300034065	Soil	EHDHLVTLALEVNQKQVGQLYREWYGIADVIKVSSGAAHASAWTGAHPPAGVPMEESRAAARA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F070407

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences