NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F070450

Metagenome Family F070450

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F070450
Family Type Metagenome
Number of Sequences 123
Average Sequence Length 69 residues
Representative Sequence MTIGSVLKIALGVVCFGIGAACLIGAICILPFISASDAAIPGMFGAFGAIFLLIAFLLLRRVRWHNV
Number of Associated Samples 108
Number of Associated Scaffolds 123

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 46.72 %
% of genes near scaffold ends (potentially truncated) 30.89 %
% of genes from short scaffolds (< 2000 bps) 75.61 %
Associated GOLD sequencing projects 101
AlphaFold2 3D model prediction Yes
3D model pTM-score0.65

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (50.407 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(8.130 % of family members)
Environment Ontology (ENVO) Unclassified
(26.829 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(45.528 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: Yes Secondary Structure distribution: α-helix: 58.95%    β-sheet: 0.00%    Coil/Unstructured: 41.05%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.65
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 123 Family Scaffolds
PF08402TOBE_2 6.50
PF04392ABC_sub_bind 5.69
PF00080Sod_Cu 4.88
PF01315Ald_Xan_dh_C 4.88
PF10009DUF2252 2.44
PF07784DUF1622 1.63
PF07238PilZ 0.81
PF07750GcrA 0.81
PF02954HTH_8 0.81
PF13714PEP_mutase 0.81
PF06808DctM 0.81
PF00528BPD_transp_1 0.81
PF10503Esterase_PHB 0.81
PF04828GFA 0.81
PF13450NAD_binding_8 0.81
PF02518HATPase_c 0.81
PF00881Nitroreductase 0.81
PF13185GAF_2 0.81
PF01928CYTH 0.81
PF03734YkuD 0.81
PF00497SBP_bac_3 0.81
PF01292Ni_hydr_CYTB 0.81
PF06965Na_H_antiport_1 0.81
PF12787EcsC 0.81
PF04226Transgly_assoc 0.81
PF00970FAD_binding_6 0.81

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 123 Family Scaffolds
COG2984ABC-type uncharacterized transport system, periplasmic componentGeneral function prediction only [R] 5.69
COG2032Cu/Zn superoxide dismutaseInorganic ion transport and metabolism [P] 4.88
COG4828Uncharacterized membrane proteinFunction unknown [S] 1.63
COG1376Lipoprotein-anchoring transpeptidase ErfK/SrfKCell wall/membrane/envelope biogenesis [M] 0.81
COG1969Ni,Fe-hydrogenase I cytochrome b subunitEnergy production and conversion [C] 0.81
COG2261Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein familyGeneral function prediction only [R] 0.81
COG2864Cytochrome b subunit of formate dehydrogenaseEnergy production and conversion [C] 0.81
COG3004Na+/H+ antiporter NhaAEnergy production and conversion [C] 0.81
COG3034Murein L,D-transpeptidase YafKCell wall/membrane/envelope biogenesis [M] 0.81
COG3038Cytochrome b561Energy production and conversion [C] 0.81
COG3658Cytochrome b subunit of Ni2+-dependent hydrogenaseEnergy production and conversion [C] 0.81
COG3791Uncharacterized conserved proteinFunction unknown [S] 0.81
COG4117Thiosulfate reductase cytochrome b subunitInorganic ion transport and metabolism [P] 0.81
COG5352Uncharacterized conserved proteinFunction unknown [S] 0.81

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms50.41 %
UnclassifiedrootN/A49.59 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2162886011|MRS1b_contig_2997238All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860857Open in IMG/M
2162886012|MBSR1b_contig_7505596All Organisms → cellular organisms → Bacteria → Proteobacteria1528Open in IMG/M
3300000033|ICChiseqgaiiDRAFT_c0390479Not Available683Open in IMG/M
3300000364|INPhiseqgaiiFebDRAFT_100300066Not Available920Open in IMG/M
3300000793|AF_2010_repII_A001DRAFT_10000221All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales10696Open in IMG/M
3300000816|AF_2010_repII_A10DRAFT_1030258Not Available573Open in IMG/M
3300000953|JGI11615J12901_10319301All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2092Open in IMG/M
3300003324|soilH2_10153371All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria3234Open in IMG/M
3300003911|JGI25405J52794_10092492Not Available670Open in IMG/M
3300004062|Ga0055500_10040106Not Available909Open in IMG/M
3300004114|Ga0062593_100957118Not Available872Open in IMG/M
3300004114|Ga0062593_102432646All Organisms → cellular organisms → Bacteria → Proteobacteria591Open in IMG/M
3300004479|Ga0062595_100010565All Organisms → cellular organisms → Bacteria3019Open in IMG/M
3300004479|Ga0062595_100303763Not Available1078Open in IMG/M
3300004633|Ga0066395_10179660Not Available1094Open in IMG/M
3300005206|Ga0068995_10040718Not Available808Open in IMG/M
3300005290|Ga0065712_10084470All Organisms → cellular organisms → Bacteria2749Open in IMG/M
3300005330|Ga0070690_100108469All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1849Open in IMG/M
3300005332|Ga0066388_100910448All Organisms → cellular organisms → Bacteria → Proteobacteria1456Open in IMG/M
3300005332|Ga0066388_101322023All Organisms → cellular organisms → Bacteria1245Open in IMG/M
3300005332|Ga0066388_102889713Not Available878Open in IMG/M
3300005332|Ga0066388_102987858Not Available864Open in IMG/M
3300005334|Ga0068869_101127625Not Available687Open in IMG/M
3300005335|Ga0070666_11416370Not Available519Open in IMG/M
3300005336|Ga0070680_100201628Not Available1678Open in IMG/M
3300005337|Ga0070682_100038838Not Available2922Open in IMG/M
3300005338|Ga0068868_100264638All Organisms → cellular organisms → Bacteria1451Open in IMG/M
3300005366|Ga0070659_101327977Not Available638Open in IMG/M
3300005437|Ga0070710_10492375Not Available838Open in IMG/M
3300005440|Ga0070705_101423612Not Available578Open in IMG/M
3300005455|Ga0070663_100016839All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria4756Open in IMG/M
3300005457|Ga0070662_100292855Not Available1320Open in IMG/M
3300005529|Ga0070741_10004486All Organisms → cellular organisms → Bacteria32540Open in IMG/M
3300005547|Ga0070693_100696525Not Available743Open in IMG/M
3300005548|Ga0070665_101027949Not Available836Open in IMG/M
3300005563|Ga0068855_101011120Not Available873Open in IMG/M
3300005614|Ga0068856_100987823Not Available860Open in IMG/M
3300005618|Ga0068864_101365497All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860710Open in IMG/M
3300005713|Ga0066905_100477806Not Available1031Open in IMG/M
3300005764|Ga0066903_101703353Not Available1200Open in IMG/M
3300005764|Ga0066903_103279607Not Available875Open in IMG/M
3300005764|Ga0066903_108995186Not Available506Open in IMG/M
3300006042|Ga0075368_10391553All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium septentrionale609Open in IMG/M
3300006173|Ga0070716_101745912Not Available514Open in IMG/M
3300006354|Ga0075021_10057313All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2262Open in IMG/M
3300006804|Ga0079221_10352062All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria890Open in IMG/M
3300006806|Ga0079220_11654088Not Available557Open in IMG/M
3300006852|Ga0075433_11856647Not Available517Open in IMG/M
3300006871|Ga0075434_100729361All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1008Open in IMG/M
3300006914|Ga0075436_100379520All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1022Open in IMG/M
3300009156|Ga0111538_10609082All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1385Open in IMG/M
3300009176|Ga0105242_10045444Not Available3559Open in IMG/M
3300009177|Ga0105248_12411711Not Available599Open in IMG/M
3300009545|Ga0105237_10895365All Organisms → cellular organisms → Bacteria894Open in IMG/M
3300009792|Ga0126374_10026228All Organisms → cellular organisms → Bacteria2654Open in IMG/M
3300010046|Ga0126384_10013884All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria5081Open in IMG/M
3300010358|Ga0126370_10061187All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae2445Open in IMG/M
3300010360|Ga0126372_12287841All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860590Open in IMG/M
3300010361|Ga0126378_11883765Not Available681Open in IMG/M
3300010362|Ga0126377_11295809All Organisms → cellular organisms → Bacteria800Open in IMG/M
3300010371|Ga0134125_10036224All Organisms → cellular organisms → Bacteria5502Open in IMG/M
3300010373|Ga0134128_12152150Not Available614Open in IMG/M
3300010375|Ga0105239_11148870Not Available894Open in IMG/M
3300010375|Ga0105239_13175647All Organisms → cellular organisms → Bacteria535Open in IMG/M
3300010396|Ga0134126_12237142All Organisms → cellular organisms → Bacteria596Open in IMG/M
3300010397|Ga0134124_10077054All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2858Open in IMG/M
3300010398|Ga0126383_10226117All Organisms → cellular organisms → Bacteria1817Open in IMG/M
3300010400|Ga0134122_12586770Not Available558Open in IMG/M
3300010403|Ga0134123_10001479All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria15294Open in IMG/M
3300012893|Ga0157284_10006975All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1884Open in IMG/M
3300012910|Ga0157308_10456505Not Available510Open in IMG/M
3300012914|Ga0157297_10507190All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860509Open in IMG/M
3300012941|Ga0162652_100014024All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root14621040Open in IMG/M
3300012951|Ga0164300_10022428Not Available2207Open in IMG/M
3300012957|Ga0164303_10061121Not Available1718Open in IMG/M
3300012960|Ga0164301_10055007All Organisms → cellular organisms → Bacteria2074Open in IMG/M
3300012961|Ga0164302_10035559All Organisms → cellular organisms → Bacteria2336Open in IMG/M
3300013296|Ga0157374_10245184Not Available1762Open in IMG/M
3300013307|Ga0157372_12523374Not Available590Open in IMG/M
3300015371|Ga0132258_10350651All Organisms → cellular organisms → Bacteria3649Open in IMG/M
3300015371|Ga0132258_10475911All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria3118Open in IMG/M
3300015371|Ga0132258_13078700All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1153Open in IMG/M
3300015372|Ga0132256_100237352All Organisms → cellular organisms → Bacteria1886Open in IMG/M
3300015372|Ga0132256_100744223Not Available1096Open in IMG/M
3300015373|Ga0132257_100031642All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium5737Open in IMG/M
3300015373|Ga0132257_100349980All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1786Open in IMG/M
3300015373|Ga0132257_100866713Not Available1130Open in IMG/M
3300015373|Ga0132257_103673128Not Available558Open in IMG/M
3300015374|Ga0132255_100210077All Organisms → cellular organisms → Bacteria → Proteobacteria2758Open in IMG/M
3300017944|Ga0187786_10044654All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1308Open in IMG/M
3300017959|Ga0187779_10000657All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales22939Open in IMG/M
3300017994|Ga0187822_10236979All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Hoeflea → unclassified Hoeflea → Hoeflea sp. EC-HK425622Open in IMG/M
3300018073|Ga0184624_10521980All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462515Open in IMG/M
3300018081|Ga0184625_10353406All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium764Open in IMG/M
3300023062|Ga0247791_1000139All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium7527Open in IMG/M
3300025898|Ga0207692_10382494Not Available874Open in IMG/M
3300025904|Ga0207647_10439891Not Available731Open in IMG/M
3300025912|Ga0207707_10016392All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium RBG_16_65_86463Open in IMG/M
3300025920|Ga0207649_11097530Not Available628Open in IMG/M
3300025925|Ga0207650_10620778Not Available910Open in IMG/M
3300025932|Ga0207690_10342204Not Available1181Open in IMG/M
3300025935|Ga0207709_11764989Not Available515Open in IMG/M
3300025937|Ga0207669_10885497Not Available745Open in IMG/M
3300025945|Ga0207679_10243919Not Available1524Open in IMG/M
3300026067|Ga0207678_10045400All Organisms → cellular organisms → Bacteria3799Open in IMG/M
3300026078|Ga0207702_12342893Not Available521Open in IMG/M
3300026944|Ga0207570_1023340Not Available501Open in IMG/M
3300027483|Ga0207637_1000993All Organisms → cellular organisms → Bacteria1351Open in IMG/M
3300027682|Ga0209971_1058980All Organisms → cellular organisms → Bacteria929Open in IMG/M
3300027894|Ga0209068_10035604All Organisms → cellular organisms → Bacteria2483Open in IMG/M
3300027915|Ga0209069_10190970All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium1040Open in IMG/M
3300028381|Ga0268264_12208883All Organisms → cellular organisms → Bacteria558Open in IMG/M
3300028809|Ga0247824_10213621All Organisms → cellular organisms → Bacteria1059Open in IMG/M
(restricted) 3300031150|Ga0255311_1021534All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1328Open in IMG/M
3300031455|Ga0307505_10576868Not Available546Open in IMG/M
3300031474|Ga0170818_103455043All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylovirgula → Methylovirgula ligni7476Open in IMG/M
3300031716|Ga0310813_10722534All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860891Open in IMG/M
3300031740|Ga0307468_100068723Not Available1955Open in IMG/M
3300031740|Ga0307468_101046913Not Available722Open in IMG/M
3300031793|Ga0318548_10376232Not Available697Open in IMG/M
3300032205|Ga0307472_100582559Not Available984Open in IMG/M
3300033412|Ga0310810_11377514Not Available543Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil8.13%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil7.32%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere6.50%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil5.69%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere5.69%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil4.88%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil4.88%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere4.06%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere3.25%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere3.25%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment2.44%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds2.44%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil2.44%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil2.44%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil2.44%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere2.44%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere2.44%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere2.44%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere2.44%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands1.63%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.63%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland1.63%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.63%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere1.63%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.63%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere1.63%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment0.81%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.81%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.81%
Sugarcane Root And Bulk SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil0.81%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.81%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil0.81%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.81%
Sandy SoilEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil0.81%
SoilEnvironmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil0.81%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere0.81%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere0.81%
Populus EndosphereHost-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere0.81%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.81%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.81%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.81%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.81%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2162886011Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1Host-AssociatedOpen in IMG/M
2162886012Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1Host-AssociatedOpen in IMG/M
3300000033Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000364Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000793Forest soil microbial communities from Amazon forest - 2010 replicate II A001EnvironmentalOpen in IMG/M
3300000816Forest soil microbial communities from Amazon forest - 2010 replicate II A10EnvironmentalOpen in IMG/M
3300000953Soil microbial communities from Great Prairies - Kansas Corn soilEnvironmentalOpen in IMG/M
3300003324Sugarcane bulk soil Sample H2EnvironmentalOpen in IMG/M
3300003911Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1Host-AssociatedOpen in IMG/M
3300004062Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D2EnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300004633Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBioEnvironmentalOpen in IMG/M
3300005206Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D2EnvironmentalOpen in IMG/M
3300005290Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1Host-AssociatedOpen in IMG/M
3300005330Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaGEnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005334Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2Host-AssociatedOpen in IMG/M
3300005335Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaGHost-AssociatedOpen in IMG/M
3300005336Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaGEnvironmentalOpen in IMG/M
3300005337Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaGEnvironmentalOpen in IMG/M
3300005338Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2Host-AssociatedOpen in IMG/M
3300005366Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaGHost-AssociatedOpen in IMG/M
3300005437Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaGEnvironmentalOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005455Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaGHost-AssociatedOpen in IMG/M
3300005457Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaGHost-AssociatedOpen in IMG/M
3300005529Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1EnvironmentalOpen in IMG/M
3300005547Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaGEnvironmentalOpen in IMG/M
3300005548Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaGHost-AssociatedOpen in IMG/M
3300005563Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2Host-AssociatedOpen in IMG/M
3300005614Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2Host-AssociatedOpen in IMG/M
3300005618Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2Host-AssociatedOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006042Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3Host-AssociatedOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006354Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012EnvironmentalOpen in IMG/M
3300006804Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200EnvironmentalOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300006914Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5Host-AssociatedOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300009177Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaGHost-AssociatedOpen in IMG/M
3300009545Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaGHost-AssociatedOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010375Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaGHost-AssociatedOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300012893Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S059-202B-1EnvironmentalOpen in IMG/M
3300012910Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2EnvironmentalOpen in IMG/M
3300012914Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2EnvironmentalOpen in IMG/M
3300012941Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015EnvironmentalOpen in IMG/M
3300012951Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MGEnvironmentalOpen in IMG/M
3300012957Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MGEnvironmentalOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300012961Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MGEnvironmentalOpen in IMG/M
3300013296Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaGHost-AssociatedOpen in IMG/M
3300013307Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaGHost-AssociatedOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300017944Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MGEnvironmentalOpen in IMG/M
3300017959Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MGEnvironmentalOpen in IMG/M
3300017994Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2EnvironmentalOpen in IMG/M
3300018067Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coexEnvironmentalOpen in IMG/M
3300018073Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1EnvironmentalOpen in IMG/M
3300018081Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1EnvironmentalOpen in IMG/M
3300023062Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S081-202R-4EnvironmentalOpen in IMG/M
3300025898Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025904Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025912Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025920Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025925Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025932Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025935Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025937Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025945Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026067Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026078Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026944Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G01K2-12 (SPAdes)EnvironmentalOpen in IMG/M
3300027483Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05.2A1-12 (SPAdes)EnvironmentalOpen in IMG/M
3300027682Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes)Host-AssociatedOpen in IMG/M
3300027894Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)EnvironmentalOpen in IMG/M
3300027915Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)EnvironmentalOpen in IMG/M
3300028381Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028809Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48EnvironmentalOpen in IMG/M
3300031150 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4EnvironmentalOpen in IMG/M
3300031455Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_SEnvironmentalOpen in IMG/M
3300031474Fir Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031716Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031793Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300033412Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NCEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
MRS1b_0824.000013102162886011Miscanthus RhizosphereMTVGSGLKIAFGIVCFAIGAACLIGAICIVPFVSWSDAAIPAAFGAVGAVFLLFAFLLLRGLRWHND
MBSR1b_0410.000024302162886012Miscanthus RhizosphereLTLPGGDRILIRGPGMTIGLALKIGLGVVCFAIGAACLIGAICTLPFISVSDAAVPGTFGAFGAVCLLIAFLLLRRVRWHND
ICChiseqgaiiDRAFT_039047913300000033SoilMTIGSGLKIAFGIVCFAIGAACLIGAICIVPFISWSDAAIPATFGAFGTIFLLFAFLLLRRLRWHND*
INPhiseqgaiiFebDRAFT_10030006613300000364SoilMTGWLKIAFAIVCFAIGAACVIGAISLSFFVSGSDAAIPALFGAFGAMCLWVAYLLLRRVRWHND*
AF_2010_repII_A001DRAFT_1000022173300000793Forest SoilMTTSFALKIALGIVCFAIGAACVIGAVCVIPFISAADVAMPITFGAFGALFLWIAFRLLRQVRWHT*
AF_2010_repII_A10DRAFT_103025833300000816Forest SoilMTTSFALKIALGIVCFAIGAACVIGAVCVIPFISAADVAMPITFGAFGALFLWIAFR
JGI11615J12901_1031930123300000953SoilMTIGSGLKIALGLVCFAIGAAGLIGALCVLPFISMSDAAIPATFGAVGAVFLLFAFLLLRRLRWHND*
soilH2_1015337123300003324Sugarcane Root And Bulk SoilMTIGSALKIGLGVVCFGIGAASLIAGASTLLFISASDVAIPAALGAIAAIFLVSAYLLLRHVRWHED*
JGI25405J52794_1009249223300003911Tabebuia Heterophylla RhizosphereMIGWLKIAFAIVCFAIGAACVIGAISLSFFISGSDAAIPTMFGAFGAMCLWITYFLLRRVRWHD*
Ga0055500_1004010623300004062Natural And Restored WetlandsMTMGSVLKIGLGVVCFGIGAACLIGAICFLPFISASDAAIPGMFGAFGAIFQLIAFLLLRRVRWHND*
Ga0062593_10095711823300004114SoilVTADCLTHGRCPVVTAEWTRGLRMTIGLVLKIALGVVCFGIGAACLIVTVCMLPFISASDAAAPGMFGVFAATFLLFAFLLLRQVRWHND*
Ga0062593_10243264623300004114SoilMTIGSGLKIALGIVCFAIGAACLIGAICIVPFVSWSDAAIPDTFGAVGAVFLLFAFLLLRGLRWHN*
Ga0062595_10001056533300004479SoilLTLPGGDRILIRGPGMTIGLALKIGLGVVCFAIGAACLIGAICTLPFISVSDAAVPGTFGAFGAVCLLIAFLLLRRVRWHND*
Ga0062595_10030376313300004479SoilPVVTAEWTRGLRMTIGLVLKIALGVLCFGIGAACLIVTVCMLPFISASDAAAPGMFGVFAATFLLFAFLLLRQVRWHND*
Ga0066395_1017966013300004633Tropical Forest SoilMTTSFALKIALGIVCFAIGAACVIGAVCVIPFISAADVAMPITFGAFGALFIWIAFRLLRQVRWHTTK*
Ga0068995_1004071813300005206Natural And Restored WetlandsMTMGSVLKIGLGVVCFGIGAACLIGAICILPFISASDAAIPGMFGAFGAIFQLIAFLLLRRVRWHND*
Ga0065712_1008447033300005290Miscanthus RhizosphereMTVGSGLKIAFGIVCFAIGAACLIGAICIVPFVSWSDAAIPATFGAVGAVFLLFAFLLLRGLRWHN*
Ga0070690_10010846933300005330Switchgrass RhizosphereMTIGSGLKIALGIVCFAIGAACLIGAICIVPFVSWSDAAIPAAFGAVGAVFLLFAFLLLRGLRWHND*
Ga0066388_10091044833300005332Tropical Forest SoilMSIVLKVALGILCFVIGAACVIGAICTVPFVSASDAAIPATFGAFGGLFLWIAFRLLRQV
Ga0066388_10132202313300005332Tropical Forest SoilMTIGLVLKIGIGVVCFGIGAACIIVALCALLFVSASDAAIPATFGMVGAIFLLIAFLLLRQVRWHND*
Ga0066388_10288971323300005332Tropical Forest SoilMRGLRMTIGSVLKIGLAVACFGIGAATLIGAICTAPFVSASEAAIPATFGAVGAIFLLIAFLLLRRVRW
Ga0066388_10298785823300005332Tropical Forest SoilMKPALKIALGFVCFGIGAAGLILTICLLVFISATGPAIPAMFGAFAAVFLWFGFLLLRQVRWHND*
Ga0068869_10112762513300005334Miscanthus RhizosphereVTPDCLTHGRCPVVTAEWTRGLRMTIGLVLKIALGVVCFGIGAACLIVTVCMLPFISASDAAAPGMFGVFAATFLLFAFLLLRQVRWHND*
Ga0070666_1141637013300005335Switchgrass RhizosphereGRCPVVTAEWTRGLRMTIGLVLKIALGVVCFGIGAACLIVTVCMLPFISASDAAAPGMFGVFAATFLLFAFLLLRQVRWHND*
Ga0070680_10020162823300005336Corn RhizosphereVVTAEGTRGLRMTIGLVLKIALGVVCFGIGAACLIVTVCMLPFISASDAAAPGMFGVFAATFLLFAFLLLRQLRWHND*
Ga0070682_10003883863300005337Corn RhizosphereMTIGLVLKIALGVVCFGIGAACLIVTVCMLPFISASDAAAPGMFGVFAATFLLFAFLLLRQVRWHND*
Ga0068868_10026463833300005338Miscanthus RhizosphereVLKIALGVVCFGIGAACLIVTVCMLPFISASDAAAPGMFGVFAATFLLFAFLLLRQVRWHND*
Ga0070659_10132797713300005366Corn RhizosphereVWLVTADCLTHGRCPVVTAEWTRGLRMTIGLVLKIALGVVCFGIGAACLIVTVCMLPFISASDAAAPGMFGVFAATFLLFAFLLLRQVRWHND*
Ga0070710_1049237513300005437Corn, Switchgrass And Miscanthus RhizosphereMTIGAVLKIAFGVICFGIGAACLIGAICMLPFISASGAAAPGMFVAFAAIFLLIAFLSLRRVHWHND*
Ga0070705_10142361213300005440Corn, Switchgrass And Miscanthus RhizosphereTADCLTHGRCPVVTAEWTRGLRMTIGLVLKIALGVVCFGIGAACLIVTVCMLPFISASDAAAPGMFGVFAATFLLFAFLLLRQVRWHND*
Ga0070663_10001683943300005455Corn RhizosphereVVTAEWTRGLRMTIGLVLKIALGVVCFGIGAACLIVTICMLPFISASDAAAPGMFGVFAATFLLFAFLLLRQVRWHND*
Ga0070662_10029285533300005457Corn RhizosphereMTIGLVLKIALGVVCFGIGAACLIVTICMLPFISASDAAAPGMFGVFAATFLLFAFLLLRQVRWHND*
Ga0070741_10004486173300005529Surface SoilMTIGSVLKIGLGIVCFGFGAACLIAALSILPFISLSDAAIPGAFMALAVIFLSITYLLLRRVRWHIDQSR*
Ga0070693_10069652523300005547Corn, Switchgrass And Miscanthus RhizosphereVTADWLTYGPCPVVTAEWTRGLRMTIGLVLKIALGVVCFGIGAACLIVTVCMLPFISASDAAAPGMFGVFAATFLLFAFLLLRQVRWHND*
Ga0070665_10102794913300005548Switchgrass RhizosphereAEWTRGLRMTIGLVLKIALGVVCFGIGAACLIVTVCMLPFISASDAAAPGMFGVFAATFLLFAFLLLRQVRWHND*
Ga0068855_10101112023300005563Corn RhizosphereVTADCLTHGRCPVVTAEWTRGLRMTIGLVLKIALGVVCFGIGAACLIVTICMLPFISASDAAAPGMFGVFAATFLLFAFLLLRQVRWHND*
Ga0068856_10098782323300005614Corn RhizosphereVVTAEWTRGLRMTIGLVLKIALGVVCFGIGAACLIVTVCMLPFISASDAAAPGMFGVFAATFLLFAFLLLRQVRWHND*
Ga0068864_10136549723300005618Switchgrass RhizosphereMTVGSGLKIAFGIVCFAIGAACLIGAICIVPFVSWSDAAIPATFGAVGAVFLLFAFLLLRGLRWHND*
Ga0066905_10047780623300005713Tropical Forest SoilMTIGLALKIALAFVCFGIGAACLIGAIAMLPFTSASDAALPGMLGAMFLFFTYLLLRRVRWHND*
Ga0066903_10170335343300005764Tropical Forest SoilALGIVCFAIGAACVIGAVCVIPFISAADVAMPITFGAFGALFLWIAFRLLRQVRWHT*
Ga0066903_10327960733300005764Tropical Forest SoilMNPSLKIALGIVCAVIGAACLIGAICMVPFISASEAIIPAMFGAVGALFLWFAYLLLRQVRWHND*
Ga0066903_10899518623300005764Tropical Forest SoilMSIALKVALGVVCFVIGAACVIGAICTVPFISVSDAAIPATFGAFGGLFLWIAFRLFRQVRWHND*
Ga0075368_1039155323300006042Populus EndosphereSGLKIALGLVCFAIGAAGLIGALCVLPFISMSDAAIPATFGAVGAVFLLFAFLLLRRLRWHND*
Ga0070716_10174591223300006173Corn, Switchgrass And Miscanthus RhizosphereVICFGIGAACLIGAICMLPFISASGAAAPGMFVAFAAIFLLIAFLSLRRVRWHND*
Ga0075021_1005731343300006354WatershedsMTIGSVLKIALGVVCFGIGAACLIGAICILPFISASDAAIPGMFGAFGAIFLLIAFLLLRRVRWHNV*
Ga0079221_1035206223300006804Agricultural SoilMTIGSGLKIALGLVCFAIGAACLIGALCVLLFISMSDAAIPATFGAAGTVFLLFAFLLLRGLRWHN*
Ga0079220_1165408813300006806Agricultural SoilMTIGSGLKIALGLVCFAIGAACLIGALCVLLFISMSDAAIPATFGAAGTVFLLFAFLLLR
Ga0075433_1185664723300006852Populus RhizosphereAHDDPRQHARKQMTTSFALKIALGIVCFVIGAACVIGGVCAVPFISGADVAMPIAFGALCLWIAFRSLRQVRWHND*
Ga0075434_10072936133300006871Populus RhizosphereHALRMTVGSGLKIAFGIVCFAIGAACLIGAICIVPFVSWSDAAIPATFGAVGAVFLLFAFLLLRGLRWHND*
Ga0075436_10037952013300006914Populus RhizosphereVCFAIGAACLIGAICIVPFVSWSDAAIPAAFGAVGAVFLLFAFLLLRGLRWHND*
Ga0111538_1060908223300009156Populus RhizosphereMTGWLKIAFAIGAACVIGAISLSFFVSGSDAAIPALFGAFGALCLWITYLLLRRVRWHDN
Ga0105242_1004544413300009176Miscanthus RhizosphereIALGVVCFGIGAACLIVTVCMLPFISASDAAAPGMFGVFAATFLLFAFLLLRQVRWHND*
Ga0105248_1241171123300009177Switchgrass RhizosphereMTVGSGLKIAFGIVCFAIGAACLIGAICIVPFVSWSDAAIPAAFGAVGAVFLLFAFLLLRGLRWHND*
Ga0105237_1089536523300009545Corn RhizosphereMTIGSGLKIALGIVCFAIGAACLIGAICIVPFVSWSDAAIPATFGAVGAVFLLFAFLLLRGLRWHN*
Ga0126374_1002622813300009792Tropical Forest SoilMTTSFALKIALGIVCFAIGVACVIGAVCVIPFISAADVAMPITFGAFGALFLWIAFRLLRQVRWHTTK*
Ga0126384_1001388453300010046Tropical Forest SoilMTIGSALKIALGLVCFGIGAAGVIVTICMVPFISASDAAVPAMFGVFGAMFLWITFLLLRRVRWHHD*
Ga0126370_1006118713300010358Tropical Forest SoilMGFALKVAFGIGCFVVGAACVIGVVCTVPFILASDAAIPATFGGLFLWVAFRLLRQVRWHND*
Ga0126372_1228784123300010360Tropical Forest SoilMSIVLKVALGILCFVIGAACVIGAICTVPFVSASDAAIPATFGAFGGLFLWIAFRLLRQVRWHN
Ga0126378_1188376513300010361Tropical Forest SoilLAWVCFGIGAVGVIVTICMVPFISASDAAVPAMFGVFGAMFLWITFLLLRRVRWHND*
Ga0126377_1129580913300010362Tropical Forest SoilIGAATLIGAICTVPFVSASEAAVPATFGAVGAIFLLIAFLLLRRVRWHND*
Ga0134125_1003622453300010371Terrestrial SoilMMTMGLVLKIGFGIVCFAIGAACLIGALCTLPFISASDAAIPGMLGACGAVFLWVAFLLLRRVRWHNDLG*
Ga0134128_1215215023300010373Terrestrial SoilAFGIVCFAIGAACLIGAICIVPFVSWSDAAIPATFGAVGAVFLLFAFLLLRGLRWHN*
Ga0105239_1114887013300010375Corn RhizosphereMTVGSGLKITFGIVCFAIGAACLIGAICIVPFVSWSDAAIPDTFGAVGAVFLLFAFLLLRGLRWHN*
Ga0105239_1317564713300010375Corn RhizosphereMTIGSGLKIALGIVCFAIGAACLIGAICIVPFVSWSDAAIPATFGAVGAVFLLFAFLLLRGLRWYND*
Ga0134126_1223714223300010396Terrestrial SoilLKIGLGVVCFAIGAACLIGAICILPFISVSDAAVPGTFGAFGAVFLLIAFLLLRRVRWHND*
Ga0134124_1007705453300010397Terrestrial SoilMTIGSGLKIALGIVCFAIGAACLIGAICIVPFVSWSDAAIPATFGAVGAVFLLFAFLLLRGLRWHND*
Ga0126383_1022611733300010398Tropical Forest SoilMTTSFALKIALGIVCFAIGAACVIGAVCVIPFISAADVAMPITFEAFGALFIWIAFRLLRQVRWHTTK*
Ga0134122_1258677013300010400Terrestrial SoilMTIGLALKIGLGVVCFAIGAACLIGAICILPFISVSDAAVPGTFGAFGAVFLLIAFLLLRRVRWHND*
Ga0134123_10001479133300010403Terrestrial SoilLTLPGGDRILIRGPGMTIGLALKIGLGVVCFAIGAACLIGAICILPFISVSDAAVPGTFGAFGAVCLLIAFLLLRRVRWHND*
Ga0157284_1000697523300012893SoilMTIGLALKIGLGVVCFAIGAACLIGAICTLPFISVSDAAVPGTFGAFGAVCLLIAFLLLRRVRWHND*
Ga0157308_1045650523300012910SoilMTIGSALKIGLGVVCFAIGAACLIGAICILPFISVSDAAVPGTFGAFGIIFLLFAFLLLRRVRWHND*
Ga0157297_1050719013300012914SoilMTVGSGLKIAFGIVCFAIGAACLIGAICIVPFVSWSDAAIPATFGAVGAVFLLFAFLL
Ga0162652_10001402413300012941SoilMIVWLKIALGVVCFGIGAACLIVATCMVFFISPSDAAIPGMFGVFGAMFLWNTFLLLRRVRWHND*
Ga0164300_1002242833300012951SoilMTIGLVLKIALGVVCFGIGAACLIVTVCMLPFISASDAAAPGMFGVFAATFLLFAILLLRQVRWHND*
Ga0164303_1006112113300012957SoilVLKIAFGVVCFGIGAACLIGAICMLPFVSASGAAAPGMFVAFAAIFLWIAFLLLRRVRWHND*
Ga0164301_1005500723300012960SoilMTLGLVLKIAFGVVCFGIGAACLIGAICMLPFVSASGAAAPGMFVAFAAIFLWIAFLLLRRVRWHND*
Ga0164302_1003555923300012961SoilMTIGLVLKIALGVVCFGIGAACLIVTVCMLPFISASNAASPGMFGVFAATFLVFAFLLLRQVRWHND*
Ga0157374_1024518433300013296Miscanthus RhizosphereMTIGLVLEIARGVCCFGIGAACLFVTICMLLFISASDAAAPGMFGVFAATFLLFAFLLLRQVRWHND*
Ga0157372_1252337413300013307Corn RhizosphereRCPVVTAEWTRGLRMTIGLVLKIALGVVCFGIGAACLIVTVCMLPFISASDAAAPGMFGVFAATFLLFAFLLLRQVRWHND*
Ga0132258_1035065133300015371Arabidopsis RhizosphereMKIALVLKIAFGIVCFGIGAACLIVAICMLPFVSVPEATIPGTFGAFAAIYLLIAFLLLRGVRWHTD*
Ga0132258_1047591133300015371Arabidopsis RhizosphereMTIGLVLKIAFGVVCFGIGAACLIVTICMLPFISASDAAIPGMFGVFGATFLLIAFLLLRQVCWHND*
Ga0132258_1307870023300015371Arabidopsis RhizosphereMTTGSVLKIGFAVACFGIGAATLIGAICTVPFVSASEAAIPATFGAVGAIFLLIAFLLLRRVRWHND*
Ga0132256_10023735243300015372Arabidopsis RhizosphereYGPLTLPGGDRILIRGPGMTIGLALKIGLGVVCFAIGAACLIGAICTLPFISVSDAAVPGTFGAFGAVCLLIAFLLLRRVRWHND*
Ga0132256_10074422333300015372Arabidopsis RhizosphereMTIGSGLKIALGIVCFAIGAACLIGAISIMPFIAWSDAAIPATFGAFGAIFLLFAFLLLRRLRWHND*
Ga0132257_10003164263300015373Arabidopsis RhizosphereMTLGLVLKIAFGVVCFGIGAACLIGAICMLPFVSASGAAAPGMFVAFAAIFLWIAFLLLRRVRWHND
Ga0132257_10034998033300015373Arabidopsis RhizosphereLTLPGGDRILIRGPGMTIGLALKIGLGVVCFAIGAACLIGAICILPFISVSDAAVPGTFGAFGAIFLLIAFLLLRRVRWHSD*
Ga0132257_10086671313300015373Arabidopsis RhizosphereIAFGIVCFGIGAACLIVAICMLPFVSVPEATIPGTFGAFAAIYLLIAFLLLRGVRWHTD*
Ga0132257_10367312823300015373Arabidopsis RhizosphereKIGLGVVCFAIGAACLIGAICTLPFISVSDAAVPGTFGAFGAVCLLIAFLLLRRVRWHND
Ga0132255_10021007753300015374Arabidopsis RhizosphereGVVCFVLGAACLIAAICILPFISVSDAAVPGTFGAFGAIFLLIAFLLLRRVRWHND*
Ga0187786_1004465423300017944Tropical PeatlandMMAWLKIAVAVGCFAIGVASVIGAISLSFFVSASDAVIPAMFGALGAVLLWISYLLLRQVRWHKD
Ga0187779_10000657133300017959Tropical PeatlandMMTTGSVLKIGLGIVGFAIGAACLIGAICVLPFISMSDAAIPAMFGAFGVIFLSIAFLLLRQVRWHND
Ga0187822_1023697933300017994Freshwater SedimentLAEGAKVTTGLVLKIGLGVACFGIGAGCLIGAICILPFISVSDAAFPGMLGASGAAFLLIAFLILRRVRWHNDLG
Ga0184611_116029913300018067Groundwater SedimentPWVHLSTRRHLADGRAMTIGLVLKIAVGLVCFVIGAASLIGAIGSLLFVSASDAHIPAMFAAFGAMFLWFTYLLLRQVRWHND
Ga0184624_1052198023300018073Groundwater SedimentMIVWLKIALGVVCFGLGAACLIGAICTLPFISTSDAAVAGLFGALGAFGAIFLWIAFLLLRRVRWHID
Ga0184625_1035340623300018081Groundwater SedimentMVGWLKIAFGVVCFGIGAACLIVAICMLPFISASDAAIPGTFGSFGAIFLLITFLLLRRVRWHTD
Ga0247791_100013963300023062SoilMTIGLALKIGLGVVCFAIGAACLIGAICTLPFISVSDAAVPGTFGAFGAVCLLIAFLLLRRVRWHND
Ga0207692_1038249423300025898Corn, Switchgrass And Miscanthus RhizosphereMTIGAVLKIAFGVICFGIGAACLIGAICMLPFISASGAAAPGMFVAFAAIFLLIAFLSLRRVHWHND
Ga0207647_1043989123300025904Corn RhizosphereVCFAIGAACLIGAICIVPFVSWSDAAIPAAFGAVGAVFLLFAFLLLRGLRWHND
Ga0207707_1001639263300025912Corn RhizosphereMTIGLVLKIALGVVCFGIGAACLIVTVCMLPFISASDAAAPGMFGVFAATFLLFAFLLLRQVRWHND
Ga0207649_1109753023300025920Corn RhizosphereIGSGLKIALGIVCFAIGAACLIGAICIVPFVSWSDAAIPATFGAVGAVFLLFAFLLLRGLRWHN
Ga0207650_1062077813300025925Switchgrass RhizosphereMTVGSGLKIAFGIVCFAIGAACLIGAICIVPFVSWSDAAIPATFGAVGAVFLLFAFLLLRGLRWHN
Ga0207690_1034220413300025932Corn RhizosphereVWLVTADCLTHGRCPVVTAEWTRGLRMTIGLVLKIALGVVCFGIGAACLIVTVCMLPFISASDAAAPGMFGVFAATFLLFAFLLLRQVRWHND
Ga0207709_1176498913300025935Miscanthus RhizosphereHGRCPVVTAEWTRGLRMTIGLVLKIALGVVCFGIGAACLIVTVCMLPFISASDAAAPGMFGVFAATFLLFAFLLLRQVRWHND
Ga0207669_1088549723300025937Miscanthus RhizosphereVVTAEWTRGLRMTIGLVLKIALGVVCFGIGAACLIVTVCMLPFISASDAAAPGMFGVFAATFLLFAFLLLRQVRWHND
Ga0207679_1024391923300025945Corn RhizosphereMTVGSGLKIAFGIVCFAIGAACLIGAICIVPFVSWSDAAIPDTFGAVGAVFLLFAFLLLRGLRWHN
Ga0207678_1004540063300026067Corn RhizosphereVVTAEWTRGLRMTIGLVLKIALGVVCFGIGAACLIVTICMLPFISASDAAAPGMFGVFAATFLLFAFLLLRQVRWHND
Ga0207702_1234289313300026078Corn RhizosphereVTADCLTHGRCPVVTAEWTRGLRMTIGLVLKIALGVVCFGIGAACLIVTICMLPFISASDAAAPGMFGVFAATFLLFAFLLLRQVRWHND
Ga0207570_102334013300026944SoilLIRGPGMTIGLALKIGLGVVCFAIGAACLIGAICTLPFISVSDAAVPGTFGAFGAVCLLIAFLLLRRVRWHND
Ga0207637_100099323300027483SoilLTLPGGDRILIRGPGMTIGLALKIGLGVVCFAIGAACLIGAICTLPFISVSDAAVPGTFGAFGAVCLLIAFLLLRRVR
Ga0209971_105898013300027682Arabidopsis Thaliana RhizosphereMTIGLALKIGLGVVCFAIGAACLIGAICTLPFISVSDAAVPGTFGAFGAVCLLIAFL
Ga0209068_1003560433300027894WatershedsMTIGSVLKIALGVVCFGIGAACLIGAICILPFISASDAAIPGMFGAFGAIFLLIAFLLLRRVRWHNV
Ga0209069_1019097013300027915WatershedsVLKIVLGVVCFGIGAACLIGAICILPFIPAFDAAIPGTFGAFGAIFLLIAFLLLRRVRWHND
Ga0268264_1220888323300028381Switchgrass RhizosphereMTIGSGLKIALGIVCFAIGAACLIGAICIVPFVSWSDAAIPAAFGAVGAVFLLFAFLLLRGLRWHND
Ga0247824_1021362123300028809SoilLTLPGGDRILNRGPGMTIGLALKIGLGVVCFAIGAACLIGAICTLPFISVSDAAVPGTFGAFGAVCLLIAFLLLRRVRWHND
(restricted) Ga0255311_102153423300031150Sandy SoilMTIRLALKIGLGVVCFVLGAACLIAAVSILPFISVSDAAVPGMFGAFGAIFLLIAFLMLRRVRWHND
Ga0307505_1057686813300031455SoilMTIGLALKIGLGVVCFAIGAACLIGAICILPFISVSDAAVPGTFGAFGAVFLLIAFLLLRRVRWHND
Ga0170818_103455043103300031474Forest SoilVTANWLTGGPLTLPSGDRRLTRGLRMTLGLVLKIAFGVACFAIGAACLILGICMLPFISASGAAPPGMFVAFAAIFLWIAFLLLRRVHWHND
Ga0310813_1072253423300031716SoilMTVGSGLKIAFGIVCFAIGAACLIGAICIVPFISWSDAAIPATFGAVGAVFLLFAFLLLRGLRWHN
Ga0307468_10006872323300031740Hardwood Forest SoilMTLGLVLKIAFGVVCFGIGAACLIVAICMLPFISASGAAAPGMFGVFAATFLWIAFLLLRQVRWHND
Ga0307468_10104691323300031740Hardwood Forest SoilMIDWLKIAFAIVCFAIGAACVIGAISLSFFVSGSDAAIPALFGAFGAMCLWIAYLLLRRVRWHND
Ga0318548_1037623223300031793SoilVLQLRVAFGIGCFVVGAACVIGVVCTVPFILASDAAIPATFGGLFLWVAFRLLRQVRWHN
Ga0307472_10058255923300032205Hardwood Forest SoilMIGWLKIAFAIVCFAIGAACVIGAISLSFFVSGSDAAIPAMFGAFGALCLWIAYLLLRRVRWHND
Ga0310810_1137751413300033412SoilMTIGSGLKIALGIVCFAIGAACLIGAICIVPFVSWSDAAIPATFGAVGAVFLLFAFLLLRGLRWYND

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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