Metagenome Family F070482

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F070482
Family Type	Metagenome
Number of Sequences	123
Average Sequence Length	41 residues
Representative Sequence	MNIDDSRLIVRFQRLITEMLVEKRLGQRRPELTDELYQT
Number of Associated Samples	85
Number of Associated Scaffolds	123

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	81.30 %
% of genes near scaffold ends (potentially truncated)	93.50 %
% of genes from short scaffolds (< 2000 bps)	91.87 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (65.854 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (32.520 % of family members)
Environment Ontology (ENVO)	Unclassified (43.089 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (46.341 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.76% β-sheet: 0.00% Coil/Unstructured: 52.24%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 123 Family Scaffolds
PF03401	TctC	3.25
PF13356	Arm-DNA-bind_3	2.44
PF00816	Histone_HNS	2.44
PF00589	Phage_integrase	2.44
PF13924	Lipocalin_5	1.63
PF00072	Response_reg	0.81
PF04862	DUF642	0.81
PF04392	ABC_sub_bind	0.81
PF04851	ResIII	0.81
PF00034	Cytochrom_C	0.81
PF03050	DDE_Tnp_IS66	0.81
PF05050	Methyltransf_21	0.81
PF01471	PG_binding_1	0.81
PF13467	RHH_4	0.81
PF01381	HTH_3	0.81
PF00590	TP_methylase	0.81
PF00884	Sulfatase	0.81
PF01545	Cation_efflux	0.81
PF01527	HTH_Tnp_1	0.81
PF03466	LysR_substrate	0.81
PF13185	GAF_2	0.81

COG ID	Name	Functional Category	% Frequency in 123 Family Scaffolds
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	3.25
COG2916	DNA-binding protein H-NS	Transcription [K]	2.44
COG0053	Divalent metal cation (Fe/Co/Zn/Cd) efflux pump	Inorganic ion transport and metabolism [P]	0.81
COG1230	Co/Zn/Cd efflux system component	Inorganic ion transport and metabolism [P]	0.81
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.81
COG3436	Transposase	Mobilome: prophages, transposons [X]	0.81
COG3965	Predicted Co/Zn/Cd cation transporter, cation efflux family	Inorganic ion transport and metabolism [P]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	65.85 %
Unclassified	root	N/A	34.15 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	65.85 %
Unclassified	root	N/A	34.15 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	65.85 %
Unclassified	root	N/A	34.15 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	58.54 %
Unclassified	root	N/A	34.15 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	3.25 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	55.28 %
Unclassified	root	N/A	34.15 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	3.25 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.15 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	15.45 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4.07 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.25 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.15 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.57 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	4.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.25 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.81 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.81 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.15 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.57 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	4.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.25 %
Methyloferula	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methyloferula	0.81 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.81 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.15 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.57 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	4.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.25 %
Methyloferula stellata	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methyloferula → Methyloferula stellata	0.81 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.81 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2189573001\|GZR05M102HHUBG	Not Available	526	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10082319	All Organisms → cellular organisms → Bacteria → Proteobacteria	805	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1025697	All Organisms → cellular organisms → Bacteria → Proteobacteria	1100	Open in IMG/M
3300000955\|JGI1027J12803_100661696	Not Available	783	Open in IMG/M
3300000956\|JGI10216J12902_110128452	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	501	Open in IMG/M
3300005332\|Ga0066388_102309245	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	973	Open in IMG/M
3300005332\|Ga0066388_104492607	Not Available	710	Open in IMG/M
3300005332\|Ga0066388_107028653	Not Available	566	Open in IMG/M
3300005434\|Ga0070709_10198455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1419	Open in IMG/M
3300005435\|Ga0070714_100550542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1104	Open in IMG/M
3300005435\|Ga0070714_100717426	Not Available	965	Open in IMG/M
3300005436\|Ga0070713_100067571	All Organisms → cellular organisms → Bacteria	3010	Open in IMG/M
3300005436\|Ga0070713_101906770	Not Available	576	Open in IMG/M
3300005586\|Ga0066691_10260960	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1018	Open in IMG/M
3300005713\|Ga0066905_100749760	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	842	Open in IMG/M
3300005764\|Ga0066903_100114284	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3719	Open in IMG/M
3300005764\|Ga0066903_100394471	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2272	Open in IMG/M
3300005764\|Ga0066903_101373345	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1325	Open in IMG/M
3300005764\|Ga0066903_103201245	Not Available	885	Open in IMG/M
3300005764\|Ga0066903_104267638	Not Available	764	Open in IMG/M
3300005764\|Ga0066903_104657932	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	730	Open in IMG/M
3300005764\|Ga0066903_105849645	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300005764\|Ga0066903_107677728	Not Available	555	Open in IMG/M
3300005764\|Ga0066903_108420927	Not Available	526	Open in IMG/M
3300005764\|Ga0066903_108882910	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	510	Open in IMG/M
3300005764\|Ga0066903_108890699	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	509	Open in IMG/M
3300006173\|Ga0070716_100776569	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	739	Open in IMG/M
3300006755\|Ga0079222_12324726	Not Available	535	Open in IMG/M
3300006791\|Ga0066653_10505541	Not Available	612	Open in IMG/M
3300006854\|Ga0075425_101147934	Not Available	884	Open in IMG/M
3300006904\|Ga0075424_101451364	Not Available	728	Open in IMG/M
3300006904\|Ga0075424_101864268	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	635	Open in IMG/M
3300007076\|Ga0075435_101190726	Not Available	667	Open in IMG/M
3300009137\|Ga0066709_104114047	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	529	Open in IMG/M
3300009147\|Ga0114129_11630044	Not Available	789	Open in IMG/M
3300010048\|Ga0126373_11029454	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	889	Open in IMG/M
3300010048\|Ga0126373_13307901	Not Available	501	Open in IMG/M
3300010358\|Ga0126370_11429204	Not Available	654	Open in IMG/M
3300010361\|Ga0126378_10638685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1178	Open in IMG/M
3300010361\|Ga0126378_11205609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	855	Open in IMG/M
3300010398\|Ga0126383_12482319	Not Available	603	Open in IMG/M
3300010398\|Ga0126383_13379876	Not Available	521	Open in IMG/M
3300012198\|Ga0137364_11130022	Not Available	589	Open in IMG/M
3300012208\|Ga0137376_11579739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	547	Open in IMG/M
3300012355\|Ga0137369_10232530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1404	Open in IMG/M
3300012356\|Ga0137371_10686035	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	784	Open in IMG/M
3300012357\|Ga0137384_11279646	Not Available	580	Open in IMG/M
3300012359\|Ga0137385_10331844	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1304	Open in IMG/M
3300012360\|Ga0137375_10207183	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1849	Open in IMG/M
3300012971\|Ga0126369_10126741	All Organisms → cellular organisms → Bacteria	2362	Open in IMG/M
3300012971\|Ga0126369_11216513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	843	Open in IMG/M
3300012971\|Ga0126369_11508948	Not Available	762	Open in IMG/M
3300012971\|Ga0126369_13627490	Not Available	506	Open in IMG/M
3300015371\|Ga0132258_12483276	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1297	Open in IMG/M
3300016270\|Ga0182036_10845044	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	748	Open in IMG/M
3300016294\|Ga0182041_10205354	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1572	Open in IMG/M
3300016294\|Ga0182041_10614036	Not Available	956	Open in IMG/M
3300016294\|Ga0182041_11095428	Not Available	723	Open in IMG/M
3300016319\|Ga0182033_10098321	Not Available	2146	Open in IMG/M
3300016319\|Ga0182033_10146176	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1817	Open in IMG/M
3300016319\|Ga0182033_11065742	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	721	Open in IMG/M
3300016341\|Ga0182035_10471067	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1068	Open in IMG/M
3300016341\|Ga0182035_11755798	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	561	Open in IMG/M
3300016404\|Ga0182037_11121351	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	689	Open in IMG/M
3300018433\|Ga0066667_11000731	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	721	Open in IMG/M
3300021168\|Ga0210406_10268101	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1397	Open in IMG/M
3300021439\|Ga0213879_10216078	Not Available	573	Open in IMG/M
3300021475\|Ga0210392_10214106	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1351	Open in IMG/M
3300021560\|Ga0126371_10059237	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3688	Open in IMG/M
3300021560\|Ga0126371_10678552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1179	Open in IMG/M
3300025898\|Ga0207692_10010412	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	3918	Open in IMG/M
3300025898\|Ga0207692_10021746	All Organisms → cellular organisms → Bacteria → Proteobacteria	2939	Open in IMG/M
3300025905\|Ga0207685_10249547	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	858	Open in IMG/M
3300025915\|Ga0207693_10481700	Not Available	969	Open in IMG/M
3300025915\|Ga0207693_10686641	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	794	Open in IMG/M
3300025915\|Ga0207693_11176524	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	579	Open in IMG/M
3300025916\|Ga0207663_10740540	Not Available	780	Open in IMG/M
3300025929\|Ga0207664_11832856	Not Available	529	Open in IMG/M
3300026310\|Ga0209239_1205274	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	704	Open in IMG/M
3300028878\|Ga0307278_10238775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	807	Open in IMG/M
3300031543\|Ga0318516_10275680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	972	Open in IMG/M
3300031545\|Ga0318541_10257480	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	970	Open in IMG/M
3300031546\|Ga0318538_10060223	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1881	Open in IMG/M
3300031549\|Ga0318571_10358419	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	561	Open in IMG/M
3300031561\|Ga0318528_10279158	Not Available	896	Open in IMG/M
3300031572\|Ga0318515_10508503	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	643	Open in IMG/M
3300031679\|Ga0318561_10129014	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methyloferula → Methyloferula stellata	1348	Open in IMG/M
3300031679\|Ga0318561_10242941	All Organisms → cellular organisms → Bacteria	981	Open in IMG/M
3300031679\|Ga0318561_10312975	Not Available	859	Open in IMG/M
3300031680\|Ga0318574_10548573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	677	Open in IMG/M
3300031681\|Ga0318572_10683627	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	611	Open in IMG/M
3300031719\|Ga0306917_10079776	Not Available	2295	Open in IMG/M
3300031719\|Ga0306917_10898113	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	693	Open in IMG/M
3300031723\|Ga0318493_10303512	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	862	Open in IMG/M
3300031736\|Ga0318501_10313029	Not Available	840	Open in IMG/M
3300031736\|Ga0318501_10441879	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	705	Open in IMG/M
3300031768\|Ga0318509_10234005	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1025	Open in IMG/M
3300031769\|Ga0318526_10301560	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	655	Open in IMG/M
3300031770\|Ga0318521_10599350	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	666	Open in IMG/M
3300031777\|Ga0318543_10525062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	530	Open in IMG/M
3300031780\|Ga0318508_1113223	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	758	Open in IMG/M
3300031792\|Ga0318529_10274156	Not Available	785	Open in IMG/M
3300031821\|Ga0318567_10340881	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	847	Open in IMG/M
3300031821\|Ga0318567_10745001	Not Available	555	Open in IMG/M
3300031890\|Ga0306925_10560396	Not Available	1211	Open in IMG/M
3300031896\|Ga0318551_10422837	Not Available	759	Open in IMG/M
3300031897\|Ga0318520_10294609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	976	Open in IMG/M
3300031910\|Ga0306923_10167005	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2513	Open in IMG/M
3300031941\|Ga0310912_10421050	All Organisms → cellular organisms → Bacteria	1040	Open in IMG/M
3300031942\|Ga0310916_10231638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1553	Open in IMG/M
3300031945\|Ga0310913_10349499	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1046	Open in IMG/M
3300031947\|Ga0310909_11469828	Not Available	543	Open in IMG/M
3300031954\|Ga0306926_11061274	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	960	Open in IMG/M
3300032010\|Ga0318569_10432409	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	614	Open in IMG/M
3300032025\|Ga0318507_10154217	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	983	Open in IMG/M
3300032025\|Ga0318507_10214553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	832	Open in IMG/M
3300032041\|Ga0318549_10388548	Not Available	629	Open in IMG/M
3300032044\|Ga0318558_10455013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	638	Open in IMG/M
3300032066\|Ga0318514_10457748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	678	Open in IMG/M
3300033289\|Ga0310914_10235849	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1641	Open in IMG/M
3300033289\|Ga0310914_11354681	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	614	Open in IMG/M
3300033289\|Ga0310914_11422277	Not Available	596	Open in IMG/M
3300033290\|Ga0318519_10628882	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	653	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.12%
Host-Associated	Host-Associated	4.88%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.12%
Plants	Host-Associated → Plants	4.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.12%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.06%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	71.54%
Loam	Environmental → Terrestrial → Soil → Loam	23.58%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.06%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	46.34%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.70%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.20%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.38%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.69%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.06%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	32.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.20%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	12.20%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	10.57%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.94%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.69%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.06%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.25%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.44%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	2.44%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.81%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.81%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.81%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2189573001	Grass soil microbial communities from Rothamsted Park, UK - FD2 (NaCl 300g/L 5ml)	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021439	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R03	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FD2_00197120	2189573001	Grass Soil	MNIDDSRLIVRFQRLITEMLVEKRLGQRRPALTDEVYQTWREV
AF_2010_repII_A1DRAFT_100823191	3300000597	Forest Soil	MNLDDSQLIVRFQRLVTEVLVEKRLGQRRPELTDELYQAWREV
AF_2010_repII_A100DRAFT_10256971	3300000655	Forest Soil	MNLDDSQLIVRFQRLVTEVLVEKRLGQRRPELTDE
JGI1027J12803_1006616962	3300000955	Soil	VVGVRMNSDDSRLIVRFQRLITEMLVEKQLGQRRPELTDEL
JGI10216J12902_1101284521	3300000956	Soil	MNMDDSRLIARFQRLITEILIEKRLGQRRPELTDEFYQTWL
Ga0066388_1023092452	3300005332	Tropical Forest Soil	MHMDDSRLIARFQRLTTELLIEKRLGQRRPELTDELYQTWIKLDQRGL
Ga0066388_1044926073	3300005332	Tropical Forest Soil	MRMNIDDSRLIVRFQRLITEMLVEKRLGQRRPGLTDDLYQ
Ga0066388_1070286533	3300005332	Tropical Forest Soil	LEVPNSDFGAVVGVRMNMEDGWLIARFQRLITELLIEKELGQRRPELTDE
Ga0070709_101984553	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MNIDDSRLIVRFQRLITEMLVEKRLGQRRPELTDELYQTWARS*
Ga0070714_1005505421	3300005435	Agricultural Soil	MNIDDSRLIVRFQRLITEMLVEKRLGQRRPELTDELYQTWR
Ga0070714_1007174263	3300005435	Agricultural Soil	MHIDDSRLIVRFQRLITEMLVEKRLGQRRPELTDELYQTWR
Ga0070713_1000675717	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MNIDDSRLFVRFQRLITEMLVEKRLGQRRPELTDELYQTWARS*
Ga0070713_1019067701	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	VLGVRMNIDDSRLIVRFQRLITEMLVEKRLGQRRPELTDEL
Ga0066691_102609602	3300005586	Soil	MNIDDSRLIAQFQRLISEMLVEKRLGYRRPELTDE
Ga0066905_1007497602	3300005713	Tropical Forest Soil	MNMDDGQLIARFQRLTTELLIEKRLGQRRPELTDELYQTWLELDQRRLKESPEYR
Ga0066903_1001142847	3300005764	Tropical Forest Soil	MNIDDSRLIVRFQRLITEMLVEKRLGQRRPELTDELYQTWRER*
Ga0066903_1003944713	3300005764	Tropical Forest Soil	MNIDDSRLIVRFQRLMTEMLVEKRLGQRRPGLTDD
Ga0066903_1013733453	3300005764	Tropical Forest Soil	ESRLIARFQRLTTELLIEKRLGQRRPELTDELYQTWLEVDQGGLNKTPSTETSC*
Ga0066903_1032012452	3300005764	Tropical Forest Soil	MNIDDSRLIVRFQRLITEMLVEKRLGQRRPGLTDDL
Ga0066903_1042676382	3300005764	Tropical Forest Soil	MRGVRMNIDDSRLIVRFQRLITEMLVEKRLGQRRPGLTDD
Ga0066903_1046579322	3300005764	Tropical Forest Soil	VRGVRMNIDDSRLIVRFQRLMTEMLVEKRLGQRRPGLTDD*
Ga0066903_1058496451	3300005764	Tropical Forest Soil	MNMDESQLIARFQRLTTELLIEKRLGQRRPELTDELYQTWLEVDQG
Ga0066903_1076777281	3300005764	Tropical Forest Soil	MNIDDSRLIVRFQRLLTEMLVEKRLGQRRLGLTDDL
Ga0066903_1084209271	3300005764	Tropical Forest Soil	MEDGRLIARFQRLTTELVIEKRLGRRRPELTDELYQ
Ga0066903_1088829102	3300005764	Tropical Forest Soil	MNIDDSRHCAVPTLDTEMLVEKRLGHRRPELTDELY
Ga0066903_1088906991	3300005764	Tropical Forest Soil	MNREDSRLIAQFQRLTTELLIEKRLGRRRPELTDELYRTWLE
Ga0070716_1007765693	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MNIDDSRLIVRFQRLITEMLVEKRLGQRRPELTDEL
Ga0079222_123247262	3300006755	Agricultural Soil	MRAQRVVVRFQRLITEMPVEKRLGHRRPELTDELYETSREA
Ga0066653_105055412	3300006791	Soil	MNIEDSWLIAPFQRFITEFLIEKRLGQRRPELTDEL
Ga0075425_1011479342	3300006854	Populus Rhizosphere	MNIDDSRLIVRFRRLITEMLVEKRLGQRRPELTDEL
Ga0075424_1014513642	3300006904	Populus Rhizosphere	MNIDDSRLIARFQGLIIEMLVERLLGERRPELADELYQ
Ga0075424_1018642681	3300006904	Populus Rhizosphere	VRFQRLITEMLVEKRLGQRRPELTDELYQTWARS*
Ga0075435_1011907262	3300007076	Populus Rhizosphere	MNIDDSRLIVRFRRLITEMLVEKRLGQRRPELTDELHQTW
Ga0066709_1041140471	3300009137	Grasslands Soil	MNMDDSRLIARFQRLTTELLIEKQLGPGRPELTSELYQTWLEAEQRGLKKT
Ga0114129_116300441	3300009147	Populus Rhizosphere	MNIDDSRLIVRFQGLIIEMLVEKQLGQRRPELTDEVYQTWRDV
Ga0126373_110294541	3300010048	Tropical Forest Soil	MNIDDSRLIVRFQRLITEMLVEKRLGQRRPGLTDDLYQT
Ga0126373_133079011	3300010048	Tropical Forest Soil	MNMDEIRLIARFQRLTTELLIEKRLGRRRSELTDELY
Ga0126370_114292041	3300010358	Tropical Forest Soil	MNIDDSRLIVRFQRLLTEMLVEKRLGQRRPGLTDDLYQM
Ga0126378_106386852	3300010361	Tropical Forest Soil	MNMDESRLIARFQRLTTELLIEKRLGQRRPELTDELYQTWLEVDQGGLNKT
Ga0126378_112056091	3300010361	Tropical Forest Soil	MNMNDSWLTARFQRLITELLIEKRLGQRRPELTDELYQTWLEVDQR
Ga0126383_124823192	3300010398	Tropical Forest Soil	MNMEDSRLIAQYQRLTTELLIEKRLGRRRPELTDELYR
Ga0126383_133798761	3300010398	Tropical Forest Soil	MNMEDSRLIAQLQRLTTELLIEKRLGRRRPELTDELYRTWL
Ga0137364_111300221	3300012198	Vadose Zone Soil	MDASRLIVRLQRLITEMLIEKRLGQRRPELTDELYQIWRE
Ga0137376_115797392	3300012208	Vadose Zone Soil	MNIDDSRLIVRFQRLITDMLVEKRLGQRRPELTDEVYQ
Ga0137369_102325302	3300012355	Vadose Zone Soil	MNMDDSRLIARFQRLTTELLIEKQLGQGRPELTSEVYQTWLEVEQ
Ga0137371_106860351	3300012356	Vadose Zone Soil	MNMDDGRLIAQFRRLITEMLVEKRLGQRRSELTDEL
Ga0137384_112796461	3300012357	Vadose Zone Soil	MNMEDSRLIARFQRLTTELLIEKQLGPGRPELTSEL
Ga0137385_103318442	3300012359	Vadose Zone Soil	MRMNIEDSWLIARFQRFITEFLIEKQLGQRRARS*
Ga0137375_102071833	3300012360	Vadose Zone Soil	MNMDDSRLIARFQRLITEILIEKRLGQRRPELTDEFYQTWLEVEQRGLKK
Ga0126369_101267411	3300012971	Tropical Forest Soil	MNIDDSRLIARFQRLITEMLIEKRLGPRRPELTDELYQAWREVERRG
Ga0126369_112165131	3300012971	Tropical Forest Soil	MNMEDSRLIAQFQRLTTELLIEKRLGRRRPELTDELYRSG*
Ga0126369_115089481	3300012971	Tropical Forest Soil	MNIDDSRLIVRFQRLMTEMLVEKRLGQRRPGLTDDL
Ga0126369_136274902	3300012971	Tropical Forest Soil	MNIDDSRLIVRFQRLMTEMLVEKRLGQRRPGLTDDLYQT
Ga0132258_124832761	3300015371	Arabidopsis Rhizosphere	MNMDDGGLIARFQRLTTELLIEKRLGRRRPELTDELYRT
Ga0182036_108450442	3300016270	Soil	MNMDDSRLIARFQRLTNELLVEKRLGQRRPELTDELCRTWLELDQ
Ga0182041_102053541	3300016294	Soil	MNMNDSWLTARFQRLITELLIEKRLGQRRPELTDELYQTWLEVD
Ga0182041_106140362	3300016294	Soil	MNMDESRLIARFQRLITELLIEKRLGQRRPELTDELY
Ga0182041_110954281	3300016294	Soil	MDDSWLTARFQRLITELLIEKRLGQRRPELTDELYQTWLEVD
Ga0182033_100983214	3300016319	Soil	MHGKDGRVPMNIDDSRLIVRFQRLITEMLVEKRLGQRRPGLTDDLYQ
Ga0182033_101461763	3300016319	Soil	MNIDDSRLIVRFQRLITEMLVEKRLGQRRPGLTDDLYQTW
Ga0182033_110657421	3300016319	Soil	MDDSWLTARFQRLITELLIEKRLGQRRPELTDELYQTWLEVDQRGLKETPAYR
Ga0182035_104710672	3300016341	Soil	VRVRMNMDESRLIARFQRLITELLIEKRLGQRRPELTDELYQTW
Ga0182035_117557981	3300016341	Soil	MNMDESRLIARFQRLTTELLIEKRLGQRRPELTDELYQ
Ga0182037_111213511	3300016404	Soil	MNMDDSWLTARFQRLITELLIEKRLGQRRPELTDELYQTWLEVDQRGLKETP
Ga0066667_110007311	3300018433	Grasslands Soil	MNMDDSRLIARFQRLTTELLIEKQLGPGRPELTSELYQTWL
Ga0210406_102681011	3300021168	Soil	MNIDDSYLIVRFQRLITEMLVEKQLGQRRPELTDE
Ga0213879_102160782	3300021439	Bulk Soil	MNIDDSRLIARVQRLITEMLIEKRLGQRRPELTDELYHTW
Ga0210392_102141064	3300021475	Soil	MHIDDSRLIVRFQRLITEMLVEKRLGQRRPELTDEL
Ga0126371_100592379	3300021560	Tropical Forest Soil	MNIDDSRLIVRFQCLITEMLVEKRLGQRRPGLTDDLYQTWR
Ga0126371_106785521	3300021560	Tropical Forest Soil	MNMDESRLIARFQRLTTELLIEKRLGQRRPELTDELYQAWLEVDQGGLNK
Ga0207692_100104123	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MNIDDSRLIVRFQRLITEMLVEKRLGQRRPELTDELYQ
Ga0207692_100217461	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	VRMNIDDSRLIVRFQRLITEMLVEKRLGQRRPELTDEVYQTWARS
Ga0207685_102495471	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MNIDDSRLITRFQRLITEMLVEKRLGQRRPELTDEVYQTWREVEQR
Ga0207693_104817001	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MNKDDSRLIVRFQRLITEMLVEIQLGQRRPELTDELY
Ga0207693_106866411	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MNIDDSRLIVRFQRLITEMLVEKRLGQRRPELTDELYQT
Ga0207693_111765243	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	LIVRFQRLITEMLVEKRLGQRRPELTDELYQTWARS
Ga0207663_107405402	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MNIDDSQLIARFQGLITEMLVERRLGERRPELTDELY
Ga0207664_118328561	3300025929	Agricultural Soil	MNIDDSRLIVRFQRLITEMLVEKRLGQRRPELTDELYQTWAR
Ga0209239_12052741	3300026310	Grasslands Soil	MKLEDSRIIARFQCLMTGLMVAKRLGQRRPELTDELYQTWLEVDQRGLK
Ga0307278_102387752	3300028878	Soil	MNMDDSRLIARFQRLITEILIEKRLGQRRPELTDEFCQTWLEVEQ
Ga0318516_102756802	3300031543	Soil	MNMDESRLIARFQRLTTELLIEKRLGQRRPELTDELYQAWLQV
Ga0318541_102574802	3300031545	Soil	MNMNDSWLTARFQRLITELLIEKRLGQRRPELTDEL
Ga0318538_100602231	3300031546	Soil	MNMEDSRLIAQFQRLTTELLIEKRLGRRRPELTDELYRTWLEV
Ga0318571_103584192	3300031549	Soil	MNMDDSRLIARFQRLTTELLIEKRLGQRRPELTDELHQTWLEVDHRGLKETPEYQN
Ga0318528_102791583	3300031561	Soil	MNMGESRLIARFQRLTTELLIEKRLGQRRSELTDELYRTWGLSRPLLN
Ga0318515_105085031	3300031572	Soil	MEDSRLIAQFQRLTTELLIEKRLGRRRPELTDELY
Ga0318561_101290141	3300031679	Soil	MNMDDSRLIARFQRLTTELLIEKRLGQRRPELTGELCQ
Ga0318561_102429412	3300031679	Soil	MNIDDSRLIALFQRLTTELLIEKRLGRRRPELTDELY
Ga0318561_103129751	3300031679	Soil	MNIDDSRLIVRFQRLITEMLVEKRLGQRRPGLTDDLYQTWRE
Ga0318574_105485732	3300031680	Soil	MNMDESRLIARFQRLTTELLIEKRLGQRRPELTDELYQTWLEVDQ
Ga0318572_106836271	3300031681	Soil	MNMDESRLIARFQRLTTELLIEKRLGQRRSELTDELYQTWLEV
Ga0306917_100797763	3300031719	Soil	MNIDDSRLIVRFQRLITEMLVEKRLGQRRPGLTDDLY
Ga0306917_108981132	3300031719	Soil	MNIDDSRLIVRFQRLITEMLVEKRLGQRRPGLTDDLYQMWRE
Ga0318493_103035121	3300031723	Soil	MNIDDSRLIVRFQRLITEMLVEKRLGQRRPGLTDDLYQTWR
Ga0318501_103130291	3300031736	Soil	MNIDDSRLIVRFQRLITEMLVEKRLGQRRPGLTDDLYR
Ga0318501_104418791	3300031736	Soil	MDDSWLTARFQRLITELLIEKRLGQRRPELTDELYQTWLEVDQRGLKETPVP
Ga0318509_102340052	3300031768	Soil	MNMDESRLIARFQRLITELLIEKRLGQRRPELTDELYQTWLEV
Ga0318526_103015602	3300031769	Soil	MNMDDSRLIARFQRLTTELLIEKRLGQRRPELTDELHQTWLEVDHRGLKE
Ga0318521_105993502	3300031770	Soil	MNMEDSRLIAQFQRLTTELLIEKRLGRRRPELTDELYRTW
Ga0318543_105250621	3300031777	Soil	MDDSWLTARFQRLITELLIEKRLGQRRPELTDELYQTWLEVDQRGLKET
Ga0318508_11132232	3300031780	Soil	MDDSRLIARFQRLTTELLIEKRLGQRRPELTDELHQTWLEVDHRGLK
Ga0318529_102741561	3300031792	Soil	MNIDDSRLIVRFQRLITEMLVEKRLGQRRPGLTDD
Ga0318567_103408811	3300031821	Soil	MNMEDSRLIAQFQRLTTELLIEKRLGRRRPELTDE
Ga0318567_107450011	3300031821	Soil	MNMGESRLIARFQRLTTELLIEKRLGQRRSELTDELY
Ga0306925_105603962	3300031890	Soil	MDDSWLTARFQRLITELLIEKRLGQRRPELTDELYQ
Ga0318551_104228371	3300031896	Soil	MNIDDSRLIVRFQRLITEMLVEKRLGQRRPGLTDDLYQ
Ga0318520_102946091	3300031897	Soil	MNMDESRLIARFQRLTTELLIEKRLGQRRPELTDELYQTWLEVDQGGLNKTPEY
Ga0306923_101670051	3300031910	Soil	MHGKDGRVPMNIDDSRLIVRFQRLITEMLVEKRLGQRRPGLTDDLYQT
Ga0310912_104210502	3300031941	Soil	MNIDDSRLIALFQRLTTELLIEKRLGRRRPELTDEL
Ga0310916_102316383	3300031942	Soil	MNMNDSWLTARFQRLITELLIETRLGQRRPELTDELYQ
Ga0310913_103494992	3300031945	Soil	MNMNDSWLTARFQRLITELLIEKRLGQRRPELTDELYQTW
Ga0310909_114698281	3300031947	Soil	MNIDDSLLIARFQLLITETLVEKRLGQRRPELTDELYQTWREVEQRGLK
Ga0306926_110612741	3300031954	Soil	MNIDDSRLIVRFQRLITEMLVEKRLGQRRPGLTDDLYQMWREVGRR
Ga0318569_104324091	3300032010	Soil	MNIDDSRLIALFQRLTTELLIEKRLGRRRPELADELYK
Ga0318507_101542171	3300032025	Soil	MNMEDSRLIAQFQRLTTELLIEKRLGRRRPELTDELYRT
Ga0318507_102145531	3300032025	Soil	MNMDESRLIARFQRLTTELLIEKRLGQRRPELTDELYQTWLEVDQGGL
Ga0318549_103885481	3300032041	Soil	MNMDESRLIARFQRLITELLIEKRLGQRRPELTDELYQ
Ga0318558_104550131	3300032044	Soil	MEDSRLIAQFQRLTTELLIEKRLGRRRPELTDELYRTWLE
Ga0318514_104577481	3300032066	Soil	MNMDESRLIARFQRLTTELLIEKRLGQRRPELTDELYQAWLQVD
Ga0310914_102358493	3300033289	Soil	MHGKDGRVPMNIDDSRLIVRFQRLITEMLVEKRLGQRRPGLTDDLY
Ga0310914_113546811	3300033289	Soil	MDDSRLIARFQRLTTELLIEKRLGQRRPELTGELCQTWLKLDQRGL
Ga0310914_114222771	3300033289	Soil	MDDSWLTARFQRLITELVIEKRLGQRRPELTDELY
Ga0318519_106288821	3300033290	Soil	MNMDESRLIARFQRLITELLIEKRLGQRRPELTDELYQTWLE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F070482

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences