Metagenome / Metatranscriptome Family F070614

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F070614
Family Type	Metagenome / Metatranscriptome
Number of Sequences	123
Average Sequence Length	71 residues
Representative Sequence	MTSLEPVERDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVREEQEAAP
Number of Associated Samples	80
Number of Associated Scaffolds	123

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	68.29 %
% of genes near scaffold ends (potentially truncated)	43.09 %
% of genes from short scaffolds (< 2000 bps)	87.80 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.61

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (76.423 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (24.390 % of family members)
Environment Ontology (ENVO)	Unclassified (45.528 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (72.358 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 59.41% β-sheet: 0.00% Coil/Unstructured: 40.59%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.61
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.61
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 123 Family Scaffolds
PF08706	D5_N	47.15
PF03237	Terminase_6N	4.07
PF01068	DNA_ligase_A_M	2.44
PF00589	Phage_integrase	1.63
PF00239	Resolvase	0.81
PF07045	DUF1330	0.81
PF05063	MT-A70	0.81
PF06078	DUF937	0.81
PF14088	DUF4268	0.81
PF03551	PadR	0.81
PF00271	Helicase_C	0.81
PF13592	HTH_33	0.81
PF13751	DDE_Tnp_1_6	0.81

COG ID	Name	Functional Category	% Frequency in 123 Family Scaffolds
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	2.44
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	2.44
COG4725	N6-adenosine-specific RNA methylase IME4	Translation, ribosomal structure and biogenesis [J]	1.63
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.81
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.81
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.81
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.81
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.81
COG3753	Uncharacterized conserved protein YidB, DUF937 family	Function unknown [S]	0.81
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	76.42 %
Unclassified	root	N/A	23.58 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	76.42 %
Unclassified	root	N/A	23.58 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	76.42 %
Unclassified	root	N/A	23.58 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	52.85 %
Unclassified	root	N/A	23.58 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	45.53 %
Unclassified	root	N/A	23.58 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.58 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	19.51 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	12.20 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.58 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	8.13 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	7.32 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.07 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.58 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	8.13 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.07 %
Rhodopseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	0.81 %
Skermanella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.58 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	8.13 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.07 %
unclassified Rhodopseudomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → unclassified Rhodopseudomonas	0.81 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.81 %
Skermanella mucosa	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella → Skermanella mucosa	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.58 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	8.13 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.07 %
Rhodopseudomonas sp. AAP120	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → unclassified Rhodopseudomonas → Rhodopseudomonas sp. AAP120	0.81 %
Bradyrhizobium sp. URHD0069	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	0.81 %
Skermanella mucosa	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella → Skermanella mucosa	0.81 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459020\|G1P06HT01A6TEX	Not Available	567	Open in IMG/M
2228664022\|INPgaii200_c1021504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2891	Open in IMG/M
2228664022\|INPgaii200_c1023169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	981	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0741887	All Organisms → cellular organisms → Bacteria → Proteobacteria	1232	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10128687	Not Available	616	Open in IMG/M
3300000955\|JGI1027J12803_100440171	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	688	Open in IMG/M
3300000955\|JGI1027J12803_100658072	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	711	Open in IMG/M
3300000956\|JGI10216J12902_113863932	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	551	Open in IMG/M
3300000956\|JGI10216J12902_118996481	Not Available	745	Open in IMG/M
3300004633\|Ga0066395_10727749	Not Available	591	Open in IMG/M
3300005332\|Ga0066388_100423126	All Organisms → cellular organisms → Bacteria	1975	Open in IMG/M
3300005332\|Ga0066388_100585652	All Organisms → cellular organisms → Bacteria	1740	Open in IMG/M
3300005332\|Ga0066388_102682860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	909	Open in IMG/M
3300005332\|Ga0066388_103885065	All Organisms → cellular organisms → Bacteria	762	Open in IMG/M
3300005332\|Ga0066388_105496126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	642	Open in IMG/M
3300005332\|Ga0066388_106900187	Not Available	572	Open in IMG/M
3300005363\|Ga0008090_10060785	Not Available	528	Open in IMG/M
3300005435\|Ga0070714_100558780	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1096	Open in IMG/M
3300005439\|Ga0070711_101082278	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	690	Open in IMG/M
3300005554\|Ga0066661_10279947	All Organisms → cellular organisms → Bacteria	1029	Open in IMG/M
3300005556\|Ga0066707_10709963	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	629	Open in IMG/M
3300005713\|Ga0066905_100743936	All Organisms → cellular organisms → Bacteria → Proteobacteria	845	Open in IMG/M
3300005713\|Ga0066905_100884777	All Organisms → cellular organisms → Bacteria	780	Open in IMG/M
3300005764\|Ga0066903_100028312	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6250	Open in IMG/M
3300005764\|Ga0066903_100046031	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5234	Open in IMG/M
3300005764\|Ga0066903_100131048	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3526	Open in IMG/M
3300005764\|Ga0066903_100323024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2466	Open in IMG/M
3300005764\|Ga0066903_100585851	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1927	Open in IMG/M
3300005764\|Ga0066903_103102487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	899	Open in IMG/M
3300005764\|Ga0066903_103194744	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	886	Open in IMG/M
3300005764\|Ga0066903_103434552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	854	Open in IMG/M
3300005764\|Ga0066903_103855262	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	805	Open in IMG/M
3300005764\|Ga0066903_104388769	Not Available	753	Open in IMG/M
3300005764\|Ga0066903_105445989	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	671	Open in IMG/M
3300005764\|Ga0066903_105787818	Not Available	649	Open in IMG/M
3300005764\|Ga0066903_106303276	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	619	Open in IMG/M
3300006028\|Ga0070717_11733916	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300006163\|Ga0070715_10178924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1062	Open in IMG/M
3300006163\|Ga0070715_10238588	All Organisms → cellular organisms → Bacteria	944	Open in IMG/M
3300006854\|Ga0075425_100736878	All Organisms → cellular organisms → Bacteria	1131	Open in IMG/M
3300009090\|Ga0099827_10604825	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	945	Open in IMG/M
3300009100\|Ga0075418_10187383	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2203	Open in IMG/M
3300009147\|Ga0114129_12672637	Not Available	595	Open in IMG/M
3300009792\|Ga0126374_11478628	Not Available	556	Open in IMG/M
3300010043\|Ga0126380_10162747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1447	Open in IMG/M
3300010043\|Ga0126380_10312108	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1125	Open in IMG/M
3300010046\|Ga0126384_11822771	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300010046\|Ga0126384_11935647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	562	Open in IMG/M
3300010047\|Ga0126382_10013906	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3975	Open in IMG/M
3300010048\|Ga0126373_10863215	All Organisms → cellular organisms → Bacteria	968	Open in IMG/M
3300010048\|Ga0126373_11065741	Not Available	874	Open in IMG/M
3300010358\|Ga0126370_10264297	All Organisms → cellular organisms → Bacteria	1343	Open in IMG/M
3300010359\|Ga0126376_10066774	All Organisms → cellular organisms → Bacteria	2614	Open in IMG/M
3300010360\|Ga0126372_10790155	Not Available	939	Open in IMG/M
3300010360\|Ga0126372_12219407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	598	Open in IMG/M
3300010362\|Ga0126377_11777291	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	692	Open in IMG/M
3300010366\|Ga0126379_10567451	All Organisms → cellular organisms → Bacteria → Proteobacteria	1216	Open in IMG/M
3300010366\|Ga0126379_10685291	All Organisms → cellular organisms → Bacteria	1118	Open in IMG/M
3300010366\|Ga0126379_11600597	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	757	Open in IMG/M
3300010376\|Ga0126381_104389809	Not Available	545	Open in IMG/M
3300010398\|Ga0126383_10497262	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1277	Open in IMG/M
3300010398\|Ga0126383_10852995	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	996	Open in IMG/M
3300010398\|Ga0126383_10964071	Not Available	940	Open in IMG/M
3300010398\|Ga0126383_12678785	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	581	Open in IMG/M
3300010398\|Ga0126383_13021100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	549	Open in IMG/M
3300010868\|Ga0124844_1196679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	739	Open in IMG/M
3300012211\|Ga0137377_10552881	Not Available	1089	Open in IMG/M
3300012948\|Ga0126375_10552992	Not Available	869	Open in IMG/M
3300012951\|Ga0164300_10199235	Not Available	979	Open in IMG/M
3300012971\|Ga0126369_10674046	Not Available	1110	Open in IMG/M
3300012971\|Ga0126369_11927270	All Organisms → cellular organisms → Bacteria	679	Open in IMG/M
3300012971\|Ga0126369_12116183	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	650	Open in IMG/M
3300012971\|Ga0126369_13467722	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella → Skermanella mucosa	517	Open in IMG/M
3300016270\|Ga0182036_11489659	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300016294\|Ga0182041_10071952	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2435	Open in IMG/M
3300016294\|Ga0182041_10258519	Not Available	1421	Open in IMG/M
3300016319\|Ga0182033_10319175	All Organisms → cellular organisms → Bacteria → Proteobacteria	1288	Open in IMG/M
3300016341\|Ga0182035_10410129	All Organisms → cellular organisms → Bacteria	1140	Open in IMG/M
3300016357\|Ga0182032_10105244	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2001	Open in IMG/M
3300016387\|Ga0182040_11181315	Not Available	643	Open in IMG/M
3300016404\|Ga0182037_10717042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	857	Open in IMG/M
3300016445\|Ga0182038_11715403	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300016445\|Ga0182038_11812233	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300021168\|Ga0210406_10159563	All Organisms → cellular organisms → Bacteria	1890	Open in IMG/M
3300021560\|Ga0126371_10057093	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3752	Open in IMG/M
3300021560\|Ga0126371_10497514	All Organisms → cellular organisms → Bacteria → Proteobacteria	1367	Open in IMG/M
3300021560\|Ga0126371_10516612	All Organisms → cellular organisms → Bacteria	1343	Open in IMG/M
3300025915\|Ga0207693_10409609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1060	Open in IMG/M
3300028799\|Ga0307284_10253825	Not Available	700	Open in IMG/M
3300028819\|Ga0307296_10222100	Not Available	1026	Open in IMG/M
3300031543\|Ga0318516_10009118	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4727	Open in IMG/M
3300031544\|Ga0318534_10118780	All Organisms → cellular organisms → Bacteria	1519	Open in IMG/M
3300031561\|Ga0318528_10131306	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1328	Open in IMG/M
3300031564\|Ga0318573_10267976	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → unclassified Rhodopseudomonas → Rhodopseudomonas sp. AAP120	912	Open in IMG/M
3300031573\|Ga0310915_10486280	Not Available	877	Open in IMG/M
3300031640\|Ga0318555_10159609	All Organisms → cellular organisms → Bacteria → Proteobacteria	1209	Open in IMG/M
3300031681\|Ga0318572_10128790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1450	Open in IMG/M
3300031719\|Ga0306917_10746849	Not Available	768	Open in IMG/M
3300031744\|Ga0306918_11477457	Not Available	520	Open in IMG/M
3300031744\|Ga0306918_11525210	Not Available	510	Open in IMG/M
3300031751\|Ga0318494_10114905	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1495	Open in IMG/M
3300031793\|Ga0318548_10231189	All Organisms → cellular organisms → Bacteria	908	Open in IMG/M
3300031833\|Ga0310917_10719700	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300031846\|Ga0318512_10378002	All Organisms → cellular organisms → Bacteria	710	Open in IMG/M
3300031860\|Ga0318495_10068683	All Organisms → cellular organisms → Bacteria → Proteobacteria	1578	Open in IMG/M
3300031879\|Ga0306919_10762521	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	744	Open in IMG/M
3300031890\|Ga0306925_10033115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5293	Open in IMG/M
3300031890\|Ga0306925_11001413	All Organisms → cellular organisms → Bacteria	852	Open in IMG/M
3300031897\|Ga0318520_10084405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1752	Open in IMG/M
3300031912\|Ga0306921_11041987	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	920	Open in IMG/M
3300031912\|Ga0306921_11265360	Not Available	818	Open in IMG/M
3300031941\|Ga0310912_11072799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	616	Open in IMG/M
3300031942\|Ga0310916_10323294	All Organisms → cellular organisms → Bacteria → Proteobacteria	1308	Open in IMG/M
3300031947\|Ga0310909_10078538	All Organisms → cellular organisms → Bacteria → Proteobacteria	2611	Open in IMG/M
3300032010\|Ga0318569_10572864	Not Available	526	Open in IMG/M
3300032041\|Ga0318549_10469318	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300032043\|Ga0318556_10189224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1069	Open in IMG/M
3300032054\|Ga0318570_10372686	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300032059\|Ga0318533_10185044	All Organisms → cellular organisms → Bacteria	1486	Open in IMG/M
3300032063\|Ga0318504_10010933	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3147	Open in IMG/M
3300032064\|Ga0318510_10187334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	831	Open in IMG/M
3300032261\|Ga0306920_103054536	Not Available	630	Open in IMG/M
3300032261\|Ga0306920_103260728	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.75%
Host-Associated	Host-Associated	2.44%
Engineered	Engineered	0.81%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.75%
Plants	Host-Associated → Plants	2.44%
Solid Waste	Engineered → Solid Waste	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.44%
Grass	Engineered → Solid Waste → Grass	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	73.17%
Loam	Environmental → Terrestrial → Soil → Loam	23.58%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.44%
Composting	Engineered → Solid Waste → Grass → Composting	0.81%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	36.59%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.46%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	18.70%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.32%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.44%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.81%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	24.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	19.51%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	18.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.32%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.06%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.44%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.44%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.63%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.81%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.81%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.81%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459020	Litter degradation NP2	Engineered	Open in IMG/M
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2NP_00372220	2170459020	Switchgrass, Maize And Mischanthus Litter	MTNLEPVARDKREYLLAELRAAVLRARLWQADIDAVGLALKAGLISSDQAVEHLSDCGVLRLLSLREQHEAAA
INPgaii200_10215041	2228664022	Soil	MTDLEAIARDKREYLLAELRAAALRARLWQSDIDAIGLALKAGLISPDQAVEHLADCGVLCLVGLREEQEAAA
INPgaii200_10231692	2228664022	Soil	MTDLEPIAHDKREYLLAELRAAALRARLWQADIDAIGLALKAGLISPDQAVEHLADCGVLCLVGLREEQEAAA
ICChiseqgaiiDRAFT_07418873	3300000033	Soil	TKDFTTMTDLEAIARDKREYLLAELRAAALRARLWQSDIDAIGLALKAGLISPDQAVEHLADCGVLCLVGLREEHGAAA*
AF_2010_repII_A1DRAFT_101286872	3300000597	Forest Soil	MTNLEPVERDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVREEQEAAP*
JGI1027J12803_1004401711	3300000955	Soil	LFAVRFKSQTTKDFTTMTDLEPIAHDKREYLLAELRAAALRARLWQADIDAIGLALKAGLISPDQAVEHLADCDVLCLVGLREEQEAAA*
JGI1027J12803_1006580722	3300000955	Soil	MTDLEAIARDKREYLLAELRAAALRARLWQSDIDAIGLALKAGLISPDQAVEHLADCGVLCLVGLREEHGAAA*
JGI10216J12902_1138639321	3300000956	Soil	MNTSEAVTRDRREYLLAELRAATLRARLWQADIDAVGVALKAGLISPDQAIEHLSDCGLLLLLGVRQEQEAAG*
JGI10216J12902_1189964811	3300000956	Soil	MTDLEPIARDKREYLLAELRTAALRTRLWQADIDTVGIALKAALISPDQAVEHLSDCGLLRLLGLREEQESAT*
Ga0066395_107277491	3300004633	Tropical Forest Soil	MTNLEPVERDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLA
Ga0066388_1004231262	3300005332	Tropical Forest Soil	MRDRCEYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVREEQEAAP*
Ga0066388_1005856521	3300005332	Tropical Forest Soil	EYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAEREEQEAAP*
Ga0066388_1026828602	3300005332	Tropical Forest Soil	RDFTTMTDLTLVARDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLGVREEQEVAS*
Ga0066388_1038850652	3300005332	Tropical Forest Soil	EYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGFLRLLAVREEQEAAP*
Ga0066388_1054961262	3300005332	Tropical Forest Soil	MTDLEPVVRDKREYLLAELRAAALRARLWQADIDAVGIALKAGLISPDQAVEHLSDCGLLRLLGLREEQEIAA*
Ga0066388_1069001871	3300005332	Tropical Forest Soil	MTNLKPVAQDKREYLLAELRAAALRARLWQADIDAIGLALKAQLISPDQAVEHLSDCGLLRLLGLRKEQEEAAA*
Ga0008090_100607852	3300005363	Tropical Rainforest Soil	MISSETVTRDRCEYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVREEQEAAP*
Ga0070714_1005587801	3300005435	Agricultural Soil	MTDLEPIARDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISADQAVEHLADCGVLCLVGLREEQRAAA*
Ga0070711_1010822781	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	IARDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISADQAVEHLADCGVLCLVGLREEQRAAA*
Ga0066661_102799472	3300005554	Soil	LLSELRCAALRARLWQSDIDTVGLALKARLISPDQAVEQLADCGVLRLLGLREEQEAAA*
Ga0066707_107099632	3300005556	Soil	MTDLEPIARDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISSDQAVEHLSDCGLLRLLGLRDEREAAA*
Ga0066905_1007439363	3300005713	Tropical Forest Soil	MISSETVTRDRREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLA
Ga0066905_1008847772	3300005713	Tropical Forest Soil	MTNLEPVERDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVREEQE
Ga0066903_1000283122	3300005764	Tropical Forest Soil	MTNLEPVAQDKREYLLAELRVAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVPHEQEAAP*
Ga0066903_1000460314	3300005764	Tropical Forest Soil	MATKTEYLLSELRCASLRARLLQSNVDAVGLALKAGLISPDEAVEYLADCGVLPLVGLREEQEQAA*
Ga0066903_1001310482	3300005764	Tropical Forest Soil	MEIATQKDFTRMIDLQTIARDRREYLLAELRAAALRARLWQADIDAVGLALKGGLISPDQAVEHLADCGVLCLVGLREGQEAAA*
Ga0066903_1003230246	3300005764	Tropical Forest Soil	MTNLEPVAQDKREYLLAELRAAAFRARLWQADIDAIGLALKAQLISPDQAVEHLSDCGLL
Ga0066903_1005858512	3300005764	Tropical Forest Soil	MNTSEAVTRDRREYLLAELRAATLRARLWQADIDAVGVALKAGLISPDQAIEHLSDCGLLRLLGVRQEQEPAG*
Ga0066903_1031024872	3300005764	Tropical Forest Soil	MISSETVTRDRREYLLAELRVAALRARLWQADIDAVGLALKAGLISPDQAVEYLSHCGLLRLLGLREEQEAAT*
Ga0066903_1031947442	3300005764	Tropical Forest Soil	MISSETVTRDGREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGFLRLLAVREEQEAAP*
Ga0066903_1034345522	3300005764	Tropical Forest Soil	MSDRREYLLAELRAAALRARLLQADIDAVGLALKAGLISPDQAIEHLSDCGLLHLVGLREEQEAA*
Ga0066903_1038552621	3300005764	Tropical Forest Soil	TSEAVTRDRREYLLAELRAATLRARLWQADIDVVGLALKAGLISRDQAVEHLSDCGLLRLLGLRVEQEAAA*
Ga0066903_1043887692	3300005764	Tropical Forest Soil	MTNLEPVERDKLEYLLAELRAAAPRARLWQADIDAVGLALKAGLISPDQAVEHLSDSGLLRLLAVHEEQEAAP*
Ga0066903_1054459892	3300005764	Tropical Forest Soil	MTDLTLVARDKREYLLAELRAAALRARLWQADIDAIGLALKAGLISPDQAVEHLSDCGLLRLLGLREEQETAA*
Ga0066903_1057878182	3300005764	Tropical Forest Soil	MATKTEYLLSELRCASLRARLLQSNVDAVGLALKAGLISPDEAVEHLADCGVLPLVGLREEQEQAA*
Ga0066903_1063032761	3300005764	Tropical Forest Soil	DRRGLQKDFATMTDLEPVVRDKREYLLAELRAAALRARLWQADIDAVGIALKAGLISPDQAVEHLSDCGLLRLLGLREEQEIAA*
Ga0070717_117339161	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	FLLFDFKSQATKDFTTMTDLEAIARDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISSDQAVEHLADCGVLCLVGLREEHGAAA*
Ga0070715_101789242	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MSRHEYVLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLG
Ga0070715_102385882	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MPDLEAIARDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISADQAVEHLADCGVLCLVGLREEQRAAA*
Ga0075425_1007368782	3300006854	Populus Rhizosphere	MTDLEAIARDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISSDQAVEHLADCGVLCLVGLREEHGAAA*
Ga0099827_106048253	3300009090	Vadose Zone Soil	KIEYLLSELRCAALRARLWQSDIDTVGLALKARLISPDQAVEQLADCGVLRLLGLREEQEAAA*
Ga0075418_101873833	3300009100	Populus Rhizosphere	LHDLSLKAPGFAPGLFFLLFDFKSQATKDFTTMTDLEAIARDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISSDQAVEHLADCGVLCLVGLREEHGAAA*
Ga0114129_126726372	3300009147	Populus Rhizosphere	MITSETVTRDRREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVREEQEAAP*
Ga0126374_114786281	3300009792	Tropical Forest Soil	MTSLEPVERDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRL
Ga0126380_101627472	3300010043	Tropical Forest Soil	MITSETVTRDSREYLLAELRAATLRARLWQADIDVVGLALKAGLISPDQAVEHLSDCGLLRLLALREEQEAAP*
Ga0126380_103121082	3300010043	Tropical Forest Soil	MITSETVTRDRREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGFLRLLAVREEQEASP*
Ga0126384_118227712	3300010046	Tropical Forest Soil	DRREYLLAELRAAALRARLLQVDIDTVGLALKAGLISPDQAVERLFDYGLLHLVGVREEQEAA*
Ga0126384_119356471	3300010046	Tropical Forest Soil	MISSETVTRDGRYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAV
Ga0126382_100139066	3300010047	Tropical Forest Soil	MISSETVTRDRCEYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGFLRLLAVREEQEAAP*
Ga0126373_108632152	3300010048	Tropical Forest Soil	VIGSATYVFEQFMNSRDFTTMTDLTLVARDKREYLLAELRAAALRARLWQADIDAIGLALKAGLISPDQAVEHLSDCGLLRLLGLREEQETAA*
Ga0126373_110657411	3300010048	Tropical Forest Soil	MTSLEPVERDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVREEQEAAP
Ga0126370_102642972	3300010358	Tropical Forest Soil	MTNLEPVERDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLSRLLAVREEQEAAP*
Ga0126376_100667743	3300010359	Tropical Forest Soil	MTSLEPVERDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVREEQEAAP*
Ga0126372_107901552	3300010360	Tropical Forest Soil	MISSETVTRDRREYLLAELRAAALRARLWQVDIDAVGIALKAGLISPDQAVEHLSDCGLLRLLGLREEQEAAP*
Ga0126372_122194072	3300010360	Tropical Forest Soil	MISSETVTRDRREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVREEHEAAP*
Ga0126377_117772912	3300010362	Tropical Forest Soil	MISSETVTRDGREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGFLRLLAVREEQEASP*
Ga0126379_105674511	3300010366	Tropical Forest Soil	DKREYLFAELRAAALRARLWQADIDAVGLALKAGVISPDQAVEHLSDCGLLRLLAVPHEQEAAP*
Ga0126379_106852912	3300010366	Tropical Forest Soil	MISSETVTRDRREYLLAELRVAALRARLWQADIDAVGLALKAGLISPDQAVEHLSHCGLLRLLGLREEQEAAT*
Ga0126379_116005972	3300010366	Tropical Forest Soil	MISSETVTRDGRYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGFLRLLAVREEQEAAP*
Ga0126381_1043898091	3300010376	Tropical Forest Soil	MTNLEPVERDKREYLFAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLCDCGLLRLLAVGEEQEA
Ga0126383_104972621	3300010398	Tropical Forest Soil	MITSETVTRDSREYLLAELRAATLRARLWQADIDVVGLALKAGLISPDQAVEHLSDCGLLRLLA
Ga0126383_108529951	3300010398	Tropical Forest Soil	MISSETVTRDGRYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGFLRLLAVREE
Ga0126383_109640711	3300010398	Tropical Forest Soil	MISSETVTRDRREYLLAELRVAALRARLWQADIDAVGLALKAGLISPDQAVEHLSHCGLLRLLGLREEHEAAT*
Ga0126383_126787852	3300010398	Tropical Forest Soil	MISSEAVTRDRCEYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDHGLLRLLAVREEQEAAP*
Ga0126383_130211001	3300010398	Tropical Forest Soil	MSDRREYLLAELRAAALRARLLQADIDAVGLALKAGLISPDQAVEHLCDCGLLHLVGVREEQEAA*
Ga0124844_11966792	3300010868	Tropical Forest Soil	MISSETVTRDGREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGFLRLLAVRE
Ga0137377_105528811	3300012211	Vadose Zone Soil	MITSETVTRDRREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVREEQEIAP*
Ga0126375_105529921	3300012948	Tropical Forest Soil	RMISSETVTRDRCEYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGFLRLLAVREEQEASP*
Ga0164300_101992352	3300012951	Soil	MTDLEAIARDKREYLLVELRAAALRARLWQADIDAVGLALKAGLISSDQAVEHLADCGVLCLVGLREGQETAA*
Ga0126369_106740461	3300012971	Tropical Forest Soil	KADCFMATKTEYLLSELRCASLRARLLQSNVDAVGLALKAGLISPDEAVEYLADCGVLPLVGLREEQEQAA*
Ga0126369_119272701	3300012971	Tropical Forest Soil	MSDRREYLLAELRAAALRTRLLQADIDAVGLALKAGLISPDQAVEHLCDCGLLHLVGVREEQEAA*
Ga0126369_121161832	3300012971	Tropical Forest Soil	MISSETVTRDRREYLLAELRVAALRARLWQADIDVVGLALKAGLISRDQAVEHLSDCGLLRLLGLRVEQEAAA
Ga0126369_134677222	3300012971	Tropical Forest Soil	DLQTIARDRREYLLAELRAAALRARLWQADIDAVGLALKGGLISPDQAVEHLADCGVLCLVGLREGQEAAA*
Ga0182036_114896591	3300016270	Soil	CEYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVREEQEAAP
Ga0182041_100719523	3300016294	Soil	MTNLEPVERDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLGLREEQEART
Ga0182041_102585192	3300016294	Soil	MSDRREYLLVELRAAALRRLLQADIDAVGLALKAGLISPDQAVEHLFDFGLLHLVGVREEQEAA
Ga0182033_103191751	3300016319	Soil	REYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLGLREEQEATT
Ga0182035_104101291	3300016341	Soil	LLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLGLREEQEATT
Ga0182032_101052441	3300016357	Soil	MTNLEPVERDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLL
Ga0182040_111813151	3300016387	Soil	MNKGQRDFTTMTNLEPVVRDKREYLLAELRAAALRARLWQADIDAVGIALKAGLISPDQAVEHLSDCGLLRLLGLREEQEVAT
Ga0182037_107170422	3300016404	Soil	MISSEMVTRDRREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVKHLSHCGLLRLLGLREEQEAAT
Ga0182038_117154031	3300016445	Soil	NLEPVERDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLGLREEQEATT
Ga0182038_118122331	3300016445	Soil	EYLLAELRAAALRARLWQADIDAIGLALKAGLISPDQAVGHLSDCGLLRLLGLREEQETA
Ga0210406_101595632	3300021168	Soil	MTDLEAIARDKREYLLVELRAAALRARLWQADIDAVGLALKAGLISSDQAVEHLADCGVLCLVGLREGQETAA
Ga0126371_100570936	3300021560	Tropical Forest Soil	MISSETVTRDRCEYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVREEQEAAP
Ga0126371_104975142	3300021560	Tropical Forest Soil	MSDRREYLLAELRAAALRARLLQADIDAVGLALKAGLISPDQAIEHLSDCGLLHLVGLREEQEAA
Ga0126371_105166121	3300021560	Tropical Forest Soil	MTNLEPVERDKREYLLAELRAATLRARLWQADIDVVGLALKAGLISPDQAVEHLSDCGLLRLLALREEQEAAP
Ga0207693_104096092	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MPDLEAIARDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISADQAVEHLADCGVLCLVGLREEQRAAA
Ga0307284_102538251	3300028799	Soil	NKREYLLAELRAAAVRARLWQAGIDAVELALKAGLISPDQAVEHLADCGVLPLVGLREEQEEAA
Ga0307296_102221001	3300028819	Soil	PRGFLFAVRFKSQTTTDFTTMTDLEPIARNKREYLLAELRAAAVRARLWQAGIDAVELALKAGLISPDQAVEHLADCGVLPLVGLREEQEEAA
Ga0318516_100091187	3300031543	Soil	MTNLEPVERDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLGLREEQEATT
Ga0318534_101187801	3300031544	Soil	ETVTRDRCEYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVREEQEAAP
Ga0318528_101313061	3300031561	Soil	MTMTNLEPVARDKCEYLLAEFRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLGLREEQEATT
Ga0318573_102679762	3300031564	Soil	MTMTNLEPVARDKCEYLLAEFRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLGLREEQETAG
Ga0310915_104862802	3300031573	Soil	MTNLEPVERDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVRAEQEAAP
Ga0318555_101596091	3300031640	Soil	FTNSRDFMTMTNLEPVARDKCEYLLAEFRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLGLREEQETAG
Ga0318572_101287904	3300031681	Soil	YLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVREEQEAAP
Ga0306917_107468492	3300031719	Soil	MTNLEPVERDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVREEQEAAP
Ga0306918_114774572	3300031744	Soil	MTNLEPVARDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISSDQAVEHLSDCGLLRLLGLREEQETVG
Ga0306918_115252102	3300031744	Soil	MTDLTLVARDKREYLLAELRAAALRARLWQADIDAIGLALKAGLISPDQAVGHLSDCGLLRLLGLREEQETAA
Ga0318494_101149054	3300031751	Soil	MISSETVTRDRREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVREEQEAAP
Ga0318548_102311892	3300031793	Soil	TVTRDRCEYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVREEQEAAP
Ga0310917_107197002	3300031833	Soil	RMISSETVTRDRCEYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVREEQEAAP
Ga0318512_103780022	3300031846	Soil	VTRDRCEYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVREEQEAAP
Ga0318495_100686831	3300031860	Soil	LLRMISSETVTRDRCEYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVREEQEAAP
Ga0306919_107625211	3300031879	Soil	MISSEMVTRDRREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSHCGLLRLLGLREEQEAAT
Ga0306925_1003311510	3300031890	Soil	MTGSQRDRCEYLLAELSAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDWDLLRLLGLREEGPPP
Ga0306925_110014132	3300031890	Soil	MTNLEPVARDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLGVREEQEVAS
Ga0318520_100844052	3300031897	Soil	MISSETVTRDRCEYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLSVREEQEAAP
Ga0306921_110419874	3300031912	Soil	MISSEMVTRDRREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSHCGLLRLLGL
Ga0306921_112653602	3300031912	Soil	MTNVDPVARDKREYLLAELRAAALRARLLQADIDAVGLALKAGLISPDQAVEHLFDFGLLHLVGVREEQEAA
Ga0310912_110727991	3300031941	Soil	MISSEMVTRDRREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSHCGLLRLLGLREEQEA
Ga0310916_103232942	3300031942	Soil	VARDKCEYLLAEFRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLGLREEQETAG
Ga0310909_100785383	3300031947	Soil	MISSETVTRDRCEYLLAELRAAALRARLWQADIDAVGLALKAVLISPDQAVEHLSDCGLLRLLAVREEQEAAP
Ga0318569_105728642	3300032010	Soil	MTNLEPVERDQREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLGLREEQEATT
Ga0318549_104693181	3300032041	Soil	PFTKGFHRMTNLEPVERDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLGLREEQEATT
Ga0318556_101892241	3300032043	Soil	MTNLEPVERDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLL
Ga0318570_103726862	3300032054	Soil	DRCEYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVREEQEAAP
Ga0318533_101850441	3300032059	Soil	LTRMTGSQRDRCEYLLAELSAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDWDLLRLLGLREEGPPP
Ga0318504_100109335	3300032063	Soil	MISSETVTRDRCEYLLTELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVREEQEAAP
Ga0318510_101873342	3300032064	Soil	LRMISSETVTRDRCEYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVREEQEAAP
Ga0306920_1030545361	3300032261	Soil	MTNVDPVARDKREYLLAELRAAALRARLLQADIDAVGLALKAGLISPDQAVEHLFDFGLLHLVGVREEQEA
Ga0306920_1032607282	3300032261	Soil	MTNLEPVERDQREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVREEQEAAP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F070614

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences