Metagenome / Metatranscriptome Family F070877

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F070877
Family Type	Metagenome / Metatranscriptome
Number of Sequences	122
Average Sequence Length	75 residues
Representative Sequence	MPYSLKEHIAECYRRAEEYGRLHKRASNSEERETLWTTKQHFFLLAKVLERKLGKLQAAPGRRLRKLRSG
Number of Associated Samples	62
Number of Associated Scaffolds	122

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	83.61 %
% of genes near scaffold ends (potentially truncated)	28.69 %
% of genes from short scaffolds (< 2000 bps)	77.05 %
Associated GOLD sequencing projects	58
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.68

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (68.852 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (27.049 % of family members)
Environment Ontology (ENVO)	Unclassified (58.197 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (56.557 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 62.24% β-sheet: 0.00% Coil/Unstructured: 37.76%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.68
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.68
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 122 Family Scaffolds
PF01381	HTH_3	4.92
PF05960	DUF885	2.46
PF00497	SBP_bac_3	1.64
PF07536	HWE_HK	1.64
PF13398	Peptidase_M50B	1.64
PF01594	AI-2E_transport	1.64
PF03401	TctC	0.82
PF03562	MltA	0.82
PF04392	ABC_sub_bind	0.82
PF06904	Extensin-like_C	0.82
PF01042	Ribonuc_L-PSP	0.82
PF00486	Trans_reg_C	0.82
PF09346	SMI1_KNR4	0.82
PF01494	FAD_binding_3	0.82
PF04986	Y2_Tnp	0.82
PF03992	ABM	0.82
PF00589	Phage_integrase	0.82
PF03169	OPT	0.82
PF02776	TPP_enzyme_N	0.82
PF12849	PBP_like_2	0.82
PF05099	TerB	0.82
PF07690	MFS_1	0.82
PF04545	Sigma70_r4	0.82
PF08447	PAS_3	0.82
PF00015	MCPsignal	0.82

COG ID	Name	Functional Category	% Frequency in 122 Family Scaffolds
COG4805	Uncharacterized conserved protein, DUF885 family	Function unknown [S]	2.46
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	1.64
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.64
COG0840	Methyl-accepting chemotaxis protein (MCP)	Signal transduction mechanisms [T]	1.64
COG3920	Two-component sensor histidine kinase, HisKA and HATPase domains	Signal transduction mechanisms [T]	1.64
COG4251	Bacteriophytochrome (light-regulated signal transduction histidine kinase)	Signal transduction mechanisms [T]	1.64
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	0.82
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.82
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.82
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	0.82
COG1297	Predicted oligopeptide transporter, OPT family	General function prediction only [R]	0.82
COG2821	Membrane-bound lytic murein transglycosylase	Cell wall/membrane/envelope biogenesis [M]	0.82
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.82
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.82
COG3793	Tellurite resistance protein TerB	Inorganic ion transport and metabolism [P]	0.82
COG3921	Uncharacterized conserved protein, contains Extensin-like_C domain	Function unknown [S]	0.82

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.85 %
All Organisms	root	All Organisms	31.15 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.85 %
cellular organisms	root	All Organisms → cellular organisms	31.15 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.85 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	31.15 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	25.41 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.85 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	21.31 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.85 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	13.93 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.82 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.85 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6.56 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.82 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.82 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.85 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.92 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.82 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.82 %
Nitrobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter	0.82 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.85 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.92 %
Nitrobacter vulgaris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → Nitrobacter vulgaris	0.82 %
Saccharopolyspora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora	0.82 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.82 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.85 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.92 %
Saccharopolyspora phatthalungensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora → Saccharopolyspora phatthalungensis	0.82 %
Nitrobacter vulgaris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → Nitrobacter vulgaris	0.82 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.82 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.82 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000580\|AF_2010_repII_A01DRAFT_1034410	Not Available	791	Open in IMG/M
3300004281\|Ga0066397_10082601	Not Available	644	Open in IMG/M
3300004633\|Ga0066395_10146018	Not Available	1193	Open in IMG/M
3300004633\|Ga0066395_10604878	Not Available	643	Open in IMG/M
3300005332\|Ga0066388_100011169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	7060	Open in IMG/M
3300005332\|Ga0066388_100013198	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6671	Open in IMG/M
3300005332\|Ga0066388_100030171	All Organisms → cellular organisms → Bacteria → Proteobacteria	5068	Open in IMG/M
3300005332\|Ga0066388_100101829	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora → Saccharopolyspora phatthalungensis	3338	Open in IMG/M
3300005332\|Ga0066388_100184075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2700	Open in IMG/M
3300005332\|Ga0066388_100205260	Not Available	2594	Open in IMG/M
3300005332\|Ga0066388_100286358	All Organisms → cellular organisms → Bacteria	2291	Open in IMG/M
3300005332\|Ga0066388_100398661	Not Available	2021	Open in IMG/M
3300005332\|Ga0066388_102293224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	977	Open in IMG/M
3300005332\|Ga0066388_102372910	Not Available	961	Open in IMG/M
3300005332\|Ga0066388_103340836	Not Available	820	Open in IMG/M
3300005332\|Ga0066388_104939603	Not Available	678	Open in IMG/M
3300005332\|Ga0066388_106580015	Not Available	586	Open in IMG/M
3300005446\|Ga0066686_10982289	Not Available	549	Open in IMG/M
3300005558\|Ga0066698_10635841	Not Available	714	Open in IMG/M
3300005713\|Ga0066905_100012202	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4165	Open in IMG/M
3300005713\|Ga0066905_100069671	Not Available	2256	Open in IMG/M
3300005713\|Ga0066905_100104119	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1935	Open in IMG/M
3300005713\|Ga0066905_100329046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1212	Open in IMG/M
3300005713\|Ga0066905_100514874	Not Available	997	Open in IMG/M
3300005713\|Ga0066905_101477943	Not Available	618	Open in IMG/M
3300005764\|Ga0066903_100726454	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1758	Open in IMG/M
3300005764\|Ga0066903_101097858	Not Available	1466	Open in IMG/M
3300005764\|Ga0066903_103323224	Not Available	869	Open in IMG/M
3300005764\|Ga0066903_104621455	Not Available	733	Open in IMG/M
3300005764\|Ga0066903_104715083	Not Available	726	Open in IMG/M
3300005764\|Ga0066903_105161945	Not Available	691	Open in IMG/M
3300005937\|Ga0081455_10024911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5531	Open in IMG/M
3300005937\|Ga0081455_10048471	All Organisms → cellular organisms → Bacteria → Proteobacteria	3670	Open in IMG/M
3300005983\|Ga0081540_1156051	Not Available	893	Open in IMG/M
3300006034\|Ga0066656_10099395	All Organisms → cellular organisms → Bacteria → Proteobacteria	1765	Open in IMG/M
3300007788\|Ga0099795_10001732	All Organisms → cellular organisms → Bacteria	4869	Open in IMG/M
3300007788\|Ga0099795_10009598	Not Available	2815	Open in IMG/M
3300010046\|Ga0126384_10116142	Not Available	2004	Open in IMG/M
3300010046\|Ga0126384_10143701	Not Available	1828	Open in IMG/M
3300010046\|Ga0126384_12006175	Not Available	553	Open in IMG/M
3300010046\|Ga0126384_12199693	Not Available	531	Open in IMG/M
3300010047\|Ga0126382_10044162	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2561	Open in IMG/M
3300010047\|Ga0126382_10312475	Not Available	1186	Open in IMG/M
3300010047\|Ga0126382_11177831	Not Available	685	Open in IMG/M
3300010358\|Ga0126370_10311238	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1254	Open in IMG/M
3300010358\|Ga0126370_10428056	Not Available	1096	Open in IMG/M
3300010358\|Ga0126370_11091721	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
3300010359\|Ga0126376_11392746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	726	Open in IMG/M
3300010359\|Ga0126376_12184047	Not Available	598	Open in IMG/M
3300010359\|Ga0126376_12989310	Not Available	522	Open in IMG/M
3300010361\|Ga0126378_10656229	Not Available	1162	Open in IMG/M
3300010362\|Ga0126377_10063703	Not Available	3255	Open in IMG/M
3300010362\|Ga0126377_10155475	Not Available	2152	Open in IMG/M
3300010362\|Ga0126377_10524743	Not Available	1219	Open in IMG/M
3300010362\|Ga0126377_11125866	Not Available	854	Open in IMG/M
3300010362\|Ga0126377_11370760	Not Available	780	Open in IMG/M
3300010362\|Ga0126377_12511234	Not Available	591	Open in IMG/M
3300010362\|Ga0126377_13535327	Not Available	505	Open in IMG/M
3300010366\|Ga0126379_10140848	Not Available	2229	Open in IMG/M
3300010398\|Ga0126383_10030806	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4256	Open in IMG/M
3300010398\|Ga0126383_11864905	Not Available	689	Open in IMG/M
3300012206\|Ga0137380_11546476	Not Available	548	Open in IMG/M
3300012208\|Ga0137376_11806388	Not Available	502	Open in IMG/M
3300012212\|Ga0150985_117592108	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	911	Open in IMG/M
3300012360\|Ga0137375_10189863	Not Available	1957	Open in IMG/M
3300012360\|Ga0137375_10278434	Not Available	1526	Open in IMG/M
3300012683\|Ga0137398_10566394	Not Available	784	Open in IMG/M
3300012685\|Ga0137397_10050502	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2983	Open in IMG/M
3300012685\|Ga0137397_10129411	Not Available	1863	Open in IMG/M
3300012685\|Ga0137397_10322065	Not Available	1152	Open in IMG/M
3300012918\|Ga0137396_11082290	Not Available	574	Open in IMG/M
3300012922\|Ga0137394_10009657	Not Available	7528	Open in IMG/M
3300012922\|Ga0137394_10558839	Not Available	970	Open in IMG/M
3300012922\|Ga0137394_11343043	Not Available	577	Open in IMG/M
3300012924\|Ga0137413_10146488	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1537	Open in IMG/M
3300012925\|Ga0137419_11908328	Not Available	510	Open in IMG/M
3300012927\|Ga0137416_10498997	Not Available	1048	Open in IMG/M
3300012929\|Ga0137404_10566119	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → Nitrobacter vulgaris	1019	Open in IMG/M
3300012930\|Ga0137407_11470634	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	648	Open in IMG/M
3300012937\|Ga0162653_100023462	All Organisms → cellular organisms → Bacteria	848	Open in IMG/M
3300012944\|Ga0137410_10008690	Not Available	6873	Open in IMG/M
3300012948\|Ga0126375_10010468	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3890	Open in IMG/M
3300012948\|Ga0126375_10033882	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2568	Open in IMG/M
3300012948\|Ga0126375_10107391	Not Available	1669	Open in IMG/M
3300012948\|Ga0126375_10338924	Not Available	1061	Open in IMG/M
3300012948\|Ga0126375_10773413	Not Available	757	Open in IMG/M
3300012948\|Ga0126375_10851207	Not Available	727	Open in IMG/M
3300012948\|Ga0126375_11550462	Not Available	568	Open in IMG/M
3300012971\|Ga0126369_10120251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2418	Open in IMG/M
3300012971\|Ga0126369_11581943	Not Available	745	Open in IMG/M
3300015242\|Ga0137412_11073197	Not Available	572	Open in IMG/M
3300015371\|Ga0132258_12053563	Not Available	1437	Open in IMG/M
3300017997\|Ga0184610_1238970	Not Available	605	Open in IMG/M
3300018028\|Ga0184608_10040255	Not Available	1801	Open in IMG/M
3300018028\|Ga0184608_10135404	Not Available	1053	Open in IMG/M
3300018051\|Ga0184620_10014461	Not Available	1859	Open in IMG/M
3300018066\|Ga0184617_1009762	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1883	Open in IMG/M
3300018072\|Ga0184635_10403532	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300018075\|Ga0184632_10239880	Not Available	794	Open in IMG/M
3300018076\|Ga0184609_10155708	Not Available	1053	Open in IMG/M
3300018076\|Ga0184609_10169634	Not Available	1010	Open in IMG/M
3300020170\|Ga0179594_10183047	Not Available	782	Open in IMG/M
3300020170\|Ga0179594_10193428	Not Available	761	Open in IMG/M
3300022756\|Ga0222622_11135107	Not Available	575	Open in IMG/M
3300024288\|Ga0179589_10200572	All Organisms → cellular organisms → Bacteria	872	Open in IMG/M
3300027512\|Ga0209179_1033567	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1061	Open in IMG/M
3300027646\|Ga0209466_1071283	Not Available	701	Open in IMG/M
3300027874\|Ga0209465_10291941	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	817	Open in IMG/M
3300027874\|Ga0209465_10690439	Not Available	501	Open in IMG/M
3300027903\|Ga0209488_10011522	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6481	Open in IMG/M
3300028719\|Ga0307301_10029185	Not Available	1647	Open in IMG/M
3300031114\|Ga0308187_10041626	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1222	Open in IMG/M
3300031114\|Ga0308187_10189524	Not Available	713	Open in IMG/M
3300031152\|Ga0307501_10049141	Not Available	937	Open in IMG/M
3300031184\|Ga0307499_10029544	All Organisms → cellular organisms → Bacteria → Proteobacteria	1236	Open in IMG/M
3300031198\|Ga0307500_10170611	Not Available	633	Open in IMG/M
3300031720\|Ga0307469_10046032	All Organisms → cellular organisms → Bacteria → Proteobacteria	2699	Open in IMG/M
3300031720\|Ga0307469_12342399	Not Available	521	Open in IMG/M
3300032174\|Ga0307470_10493271	Not Available	892	Open in IMG/M
3300032174\|Ga0307470_10617347	Not Available	813	Open in IMG/M
3300032180\|Ga0307471_101468283	Not Available	841	Open in IMG/M
3300032205\|Ga0307472_102028021	Not Available	577	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.90%
Host-Associated	Host-Associated	4.10%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.70%
Aquatic	Environmental → Aquatic	8.20%
Plants	Host-Associated → Plants	4.10%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	86.89%
Sediment	Environmental → Aquatic → Sediment	8.20%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.10%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	61.48%
Loam	Environmental → Terrestrial → Soil → Loam	25.41%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.20%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.46%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.64%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	53.28%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	25.41%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.20%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.74%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.46%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.46%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.64%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	27.05%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	25.41%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	21.31%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	7.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.46%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	2.46%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.82%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.82%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.82%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.82%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.82%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300004281	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012937	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t5i015	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300027512	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes)	Environmental	Open in IMG/M
3300027646	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031152	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031198	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A01DRAFT_10344103	3300000580	Forest Soil	MPYSLKEHIAECYRRAEDYGRLHQSASNLKERETLWFTRQHFLLLAKVLERRLTKLQAAAPGRNGK
Ga0066397_100826011	3300004281	Tropical Forest Soil	MPYSLKEHIAECYRRAEEFGKLHKRASNSNERDILRTTKQHFLLLAKALERKLQEGTRRRTTKLRSA*
Ga0066395_101460182	3300004633	Tropical Forest Soil	MPYSLKEHIAECYRRADDYGRLHQRASNSKERETLWFTRQHFLLLAKVLERKLSKLQALPRRRDKKLHGRRDKNLGST*
Ga0066395_106048782	3300004633	Tropical Forest Soil	MPCSLKEHIAECYRRAEEFGQLHKSASNSEERETLRTTKQHFLLLAKVLERKLDKLQAAPGRKRKKLRSG*
Ga0066388_1000111697	3300005332	Tropical Forest Soil	MPYSLKEHIAECYRRAEDYGRLRQRASNLKERETLWFAKQHFLLLAKVLERKLSKLQAVSGRRDKKLAGPRKAKERVSP*
Ga0066388_1000131984	3300005332	Tropical Forest Soil	MPYNLKEHIAECYRRAEEFAQLHKRASKSQERGVLWTTREHFLLLAKALESKLQEAPRRRTRKLESV*
Ga0066388_1000301715	3300005332	Tropical Forest Soil	MPYSLKEHIAECYRRAADYGRLHQRASNPKERETLWFTKQHFLLLAKVLERKLSRLQAASGRRDKKHAGRRDKNLRSA*
Ga0066388_1001018296	3300005332	Tropical Forest Soil	MPYSLKDHIAECYRRAEEFEQLHKRASTSEERETLRTTTQHFLLLASTLERKLDRLQAAPGRRGKKLTSA*
Ga0066388_1001840753	3300005332	Tropical Forest Soil	MPYSLKEHIAECYRRAEEYGRLHQRASNSEERDTLRTTRQHFLLLAKVLERKLDKLQTAPMRRGKKLRSG*
Ga0066388_1002052603	3300005332	Tropical Forest Soil	MMPYSLKEHIAECYRRAEDYGRLHQSASNLKERETLWFTRQHFLLLAKVLERRLSKLQAAAPGRNGRKLLGRRDKKLRRA*
Ga0066388_1002863581	3300005332	Tropical Forest Soil	MPYSLKEHIAECYRRAEEFAQLHKRASKSQERGVLWTTRQHFLLLAKALERKLQEAPRRTTKKLKSA*
Ga0066388_1003986612	3300005332	Tropical Forest Soil	MPYSLKEHVAECYRRAEDYGRLCQRASNSKERETLWFTRQHFLLLAKVLERKLPQAAPGRNGKKLPGRRDKKLRRA*
Ga0066388_1022932241	3300005332	Tropical Forest Soil	LKEHIAECYRRAEEFAQLHKKASRSEERGILWTTRQHFLLLAQALETKLQDAPRQRTRKLRSA*
Ga0066388_1023729102	3300005332	Tropical Forest Soil	MSYSLKEHVAECYRRAEDYGRLCQRASNSKERETLWFTRQHFLLLAKVLERKLSKLQAAPGRNGKKLPGRRDKKLRRA*
Ga0066388_1033408362	3300005332	Tropical Forest Soil	MSYSLKEHVAECYRRAEDYGRLCQRASDSKERETLWFTRQHFLLLAKVLERKLSKLQAAPGRNGKKLPGGRDKKLRRA*
Ga0066388_1049396031	3300005332	Tropical Forest Soil	MPYNLKEHIAECYRRAEDYGRLHQRASNSKERETLWFTKQHFLLLAKVLERKLSKLQVASGRIDKKLPGRRGKKLRSA*
Ga0066388_1065800152	3300005332	Tropical Forest Soil	GHGRGMMPYSLKEHIAECYRRAEEFGQLHKRASNSNERDVLRTTKQHFLLLAKALERKLQEAPRRRAAKLRSV*
Ga0066686_109822891	3300005446	Soil	MPYSLKEHIAECYRRAEDYGRLQQRASNSKERETLWFTRQHFLLLARVLERKLRKLQAAPGRRDKKLPGRRDKKLRSA*
Ga0066698_106358411	3300005558	Soil	MPYSLKAHIAECYRRAEEFAQLHKKASKSQERSVLWTTREHFLLLAKALETKLQQAPRQRTRKLESA*
Ga0066905_1000122025	3300005713	Tropical Forest Soil	MPYSVKMPYSLKEHIAECYRRAEDYGRLHQRASNSKERETLWFTKQHFLLLAKVLERKLSKLQVASGRIEKKLPGRRGKKLRSA*
Ga0066905_1000696713	3300005713	Tropical Forest Soil	MPYSLKEHVAECYRRAEDYGRLCQRASNSKERETLWFTRQHFLLLAKVLERKLSKPQEAPRRNGKKPTGRRDKRLRS*
Ga0066905_1001041192	3300005713	Tropical Forest Soil	MPYSLKEHIAECYRRAEEFAQLHKRASKSQERGILWTTRQHFLLLAKALERKLQEAPRRRTKKLKSA*
Ga0066905_1003290461	3300005713	Tropical Forest Soil	MPYSLKEHIAECYRRAEEFAQLHKKASKSEERGILWTTRQHFLLLAQALERKLQGAPRQRTRKLRSA*
Ga0066905_1005148742	3300005713	Tropical Forest Soil	MPYSLKGHVAECYRRADDYGRLCQRASNSKERETLWFTRQHFLLLAKVLERKLSKPHAAPGRNGKKLPGRRDKKKA*
Ga0066905_1014779431	3300005713	Tropical Forest Soil	GSWAWEGMMPYSLKEHIAECYRRAEDYGRLHKKASNSKDRDTLWFTREHFLLLAKALERKLQEAPRRRTAKLRSA*
Ga0066903_1007264543	3300005764	Tropical Forest Soil	MPYSLKEHIAECYRRAEEFAQLHKRASKSQERGILWTTRQHFLLLAKALERKLQEAPRRRSKKLKSA*
Ga0066903_1010978581	3300005764	Tropical Forest Soil	RYFSWGWERMMPYSLKEHIAECYRRAEEFAQLHKKASKSEERGILWTTRQHFLLLAQALERKLQEAPRQRTRKLTSA*
Ga0066903_1033232243	3300005764	Tropical Forest Soil	MAYSLKGHVAECYRRADDYGRLCQRASNSKERETLWFTRQHFLLLAKVLERKLSKPHAAPGRNGKKLPGRRDKKKA*
Ga0066903_1046214552	3300005764	Tropical Forest Soil	MPVRLKEHIAECYRRAEDYGRLQKRASNLDERETLWVRRQHFLLLARDLERKLSELQLAPRRRAKTLRSERAIRRP*
Ga0066903_1047150831	3300005764	Tropical Forest Soil	MPYSLKEHIAECYRRAEDYGRLHQSASNLKERETLWFTRQHFLLLAKVLERRLSKLQAAAPGRNGRKLLGRRDKKLRRA*
Ga0066903_1051619451	3300005764	Tropical Forest Soil	GWERMMPYSLKEHIAECYRRAEEFAQLHKKASKSEERGILWTTRQHFLLLAQALERKLQGAPRQRTRKLRSA*
Ga0081455_100249111	3300005937	Tabebuia Heterophylla Rhizosphere	MPYSVKMPYSLKEHIAECYRRAEDYGRLHQRASNPKERETLWFTKQHFLLLAKVLERKLSKLQVASGRIDKKLPGRRGKKLRSA*
Ga0081455_100484717	3300005937	Tabebuia Heterophylla Rhizosphere	MPYSLKEHVAECYRRAEDYGRLYQRASNSKERETLWFTRQHFLLLANVLERKLDKLQAAPARRDTKLLGRRDTKL
Ga0081540_11560512	3300005983	Tabebuia Heterophylla Rhizosphere	MPYSLKEHIAECYRRAEDYGRLHKRASNSKERDTLWFTREHFLLLAKALERKLQEAPRRRTAKLRSA*
Ga0066656_100993951	3300006034	Soil	GMMPYSLKEHIAECYRRAEDYGRLHQRASNSKERETLWFTRQHFLLLAKVLERKLSKLQAASGRIDKKLLGRRDKKLPGRRDKKLRSA*
Ga0099795_100017325	3300007788	Vadose Zone Soil	MTYSLKEHIAECYRRAEDYGRLHKLASNSDERETLWITRQRFFLLAKVLEGKLGKLRSARARKGKKLRSRLSQLERC*
Ga0099795_100095982	3300007788	Vadose Zone Soil	MMPYSLKEHIAECYRRAEEYGQLHKRASNSEERETLRTTKQHFFLLAKVLERKLSKLEAAPRWRDKKLRSG*
Ga0126384_101161422	3300010046	Tropical Forest Soil	MPYSLKEHIAECYRRAEDYGRLHKRASNSEERDALWFTRQHFLLLAKSLERKLQEAPRRTATTLRSA*
Ga0126384_101437011	3300010046	Tropical Forest Soil	MMPYNLKEHIAECYRRAEDYGRLHYRASDSKERETLWFTRQHFLLLAKVLERKLSKLQAAAGRIDKKISGRRDKKLPGRKDKKLRSA*
Ga0126384_120061751	3300010046	Tropical Forest Soil	MPYSLKEHVAECYRRAEDYGRLCQRASNSKERETLWFTRQHFLLLAKVLERKLSKLQAAPGRNGKKLPGRRDKKLRRA*
Ga0126384_121996931	3300010046	Tropical Forest Soil	ILRICGMGRTMPYSLKEHIAECYRRAEDYGRLQKTASISEDREILWTTRQHFLLLAKVLERKLSKLQSAHARRDKKLTSA*
Ga0126382_100441623	3300010047	Tropical Forest Soil	MPYSLKEHIAECYRRAEEFAQLHKRASKSQERDVLLMTRQRFLLLAKVLERKLQAPRRRSKKLASA*
Ga0126382_103124753	3300010047	Tropical Forest Soil	MMPCSLKEHIAECYRRAEDYGRLHQRASNSKERETLWFTKQHFLLLAKVLERKLSKLQVASGRIDKKLPGRRGKKLRSA*
Ga0126382_111778311	3300010047	Tropical Forest Soil	MGGDMPYSVKMPYSLKEHIAECYRRAEDYGRLHQRASNSKERETLWFTKQHFLLLAKVLERKLSKLQVASGRIDKKLPGRR
Ga0126370_103112383	3300010358	Tropical Forest Soil	MPCSLKEHIAECYRRAEEFGQLHKSASNSEERETLRTTKQHFLLLAKVLERKLDKLQA
Ga0126370_104280562	3300010358	Tropical Forest Soil	MPYSLKDHIAECYRRAEEFGQLHKRASKLEERETLWTTRQHFLLLAKALERKLSNLQEAPRRRTKKLRSELSP*
Ga0126370_110917211	3300010358	Tropical Forest Soil	KEHIAECYRRAEDYGRLHQSASNLKERETLWFTRQHFLLLAKVLERRLSKLQAAAPGRNGRKLLGRRDKKLRRA*
Ga0126376_113927462	3300010359	Tropical Forest Soil	MPYSLKDHIAECYRRAEEFGQLHKRASTSHERETLWTTKQHFLLLAKALERKLSNLQEAPRRR
Ga0126376_121840472	3300010359	Tropical Forest Soil	MPYSLKDHIAECYRRAEEFGQLHKRASKLEERETLWTTRQHFLLLAKALERKLSKLQEAPRRRTKKLRTELSP*
Ga0126376_129893101	3300010359	Tropical Forest Soil	MMPYNLKEHIAECYRRAEDYGRLHQRASNSKERETLWFTKQHFLLLAKVLERKLSKLQVASGRIDKKLPGRRGKKLRSA*
Ga0126378_106562291	3300010361	Tropical Forest Soil	MMPYSLKEHIAECYRRADDYGRLHQRASNSKERETLWFTRQHFLLLAKVLERKLSKLQALPRRRDKKLHGRRDKNLGST*
Ga0126377_100637034	3300010362	Tropical Forest Soil	MPYSLKEHIAECYRRAEDYGRLHQSASNLKERETLWFTRQHFLLLGKVLERRLSKLQAAAPGRNGRKLLGRRDKKLRRA*
Ga0126377_101554753	3300010362	Tropical Forest Soil	MPYSLKGHVAECYRRADDYGRLCQRASNSKERETLWFTRQHFLLLAKVLERKLSKPQAAPGRNGKKLPGRRDKKKA*
Ga0126377_105247432	3300010362	Tropical Forest Soil	MGGDMPYSVKMPYSLKEHIAECYRRAEDYGRLHQRASNPKERETLWFTKQHFLLLAKVLERKLSKLQVASGRIDKKLPGRRGKKLRSA*
Ga0126377_111258662	3300010362	Tropical Forest Soil	MMPCNLKEHIAECYRRAEDYGRLHQRASNSKERETLWFTKQHFLLLAKVLERKLSKLQVASGRIEKKLPGRRGKKLRSA*
Ga0126377_113707602	3300010362	Tropical Forest Soil	MPYSLKEHIAECYRRAEEFGQLHKRASNSNERDVLRTTKQHFLLLAKALERKLQEAPRRRAAKLRSV*
Ga0126377_125112341	3300010362	Tropical Forest Soil	MMPYSLKEHIAECYRRADDYGRLHQRASNSKERETLWFTRQHFLLLAKVLESKLSKLKAVSGRNGKKLPGRRDRKLRRA*
Ga0126377_135353271	3300010362	Tropical Forest Soil	MPYSLKEHIAECYRRAEDYGRLHKKASNSKDRDTLWFTREHFLLLAKALERKLQEAPRRRTAKLRSA*
Ga0126379_101408482	3300010366	Tropical Forest Soil	MPFRLKDHIAECYRRAEDYGRLQKRASNLDERETLWARRQHFLLLARDLERKLSELQLAPRRRAKTLRSERAIRRP*
Ga0126383_100308064	3300010398	Tropical Forest Soil	MPCSLKEHIAECYRRAEEFGQLHKSASNSEERETLRTTKQHFLLLAKVLERKLDKLQAAPGRKRRKLRSG*
Ga0126383_118649052	3300010398	Tropical Forest Soil	EGKMPYNLKEHIAECYRRAEEFGRLHKRASNSDERETLWTTKQHFLLLAKALERKLSKLHEASKRRTTKLRSA*
Ga0137380_115464761	3300012206	Vadose Zone Soil	MSYSLKEHIAECYRRAEDYGRLHQRASNSKERETLWFTRQHFLLLGKVLERKLSKLQAASGRIDKKLLGRRDKKLAGRGDKKLRSA*
Ga0137376_118063881	3300012208	Vadose Zone Soil	MSYNLKEHVAECYRRAEDYGRLCQRASNSKERETLWFTRQHFLLLAKVLERKLSKLQAAPGRNGKKLPGRRDKKLRRA*
Ga0150985_1175921081	3300012212	Avena Fatua Rhizosphere	MPYSLKDHIAECYRRAEEYGQLRKKTSNPEKREILWTTRQQFFVLAKVLESKLSKLQSVRLRKNKKLTSA*
Ga0137375_101898633	3300012360	Vadose Zone Soil	MPYSLKEHIAECYRRAEEYGQLRKKTSNPEKREILWTTRQQFFLLAKVLENKLSKLQSVRLRKNKKLTSA*
Ga0137375_102784343	3300012360	Vadose Zone Soil	MMPYSLKEHIAECYRRAEEYGRLHKRASNSEERETLWTTKQHFFLLAKVLERKLSKLQAAPGRRLRKLRSG*
Ga0137398_105663942	3300012683	Vadose Zone Soil	MMPYSLKEHIAECYRRAEEYGQLHKRASNSEERETLRTTKQHFFLLAKVLERKLSKLEAAPRWRDKKLR
Ga0137397_100505023	3300012685	Vadose Zone Soil	MPYSLKEHIAECYRRAEEFGRLHNRASNSEERETLRTTKQHFFLLAKVLERKLSKLQAASGRSVRKLRSG*
Ga0137397_101294112	3300012685	Vadose Zone Soil	MPYSLKEHVAECYRHAEDYGRLCQRASNSKERETHWFTRQHFLLLAGVLERKLSKLQAAPERTGKKLTGRRDKKLRSA*
Ga0137397_103220653	3300012685	Vadose Zone Soil	MPYSLKEHIAECYRRAEDYGRLRKLASNSDERETLWITRQRFFLLAKVLEGKLGKLQSALARKGKKLRSRLSQLERC*
Ga0137396_110822901	3300012918	Vadose Zone Soil	MPYSLKEHIAECYRRAEDYGRLHKLASNSDERETLWITRQRFFLLAKVLEGKLGKLRSARARKGKKLRSRLSQLESC*
Ga0137394_100096577	3300012922	Vadose Zone Soil	MMPYSLKEHVAECYRRADEYGRLHQRASNSKERETLWFTRQHFLLLAGVLERKLSKLQAAPRRSVGKLRSGGVRRHLSKAARPL*
Ga0137394_105588392	3300012922	Vadose Zone Soil	MMPYSLKEHIAECYRRAEEYGRLHKRASNSEERETLWTTKQHFFLLAKVLERKLSKLQAASGLSIRKLRSG*
Ga0137394_113430431	3300012922	Vadose Zone Soil	MPYSLKEHIAECYRRAEDYGRLRKLASNSDERETLWITRQRFFLLAKVLEGKLGKLQSARARKGKKLRSRLSQLERC*
Ga0137413_101464882	3300012924	Vadose Zone Soil	MPYSLKEHIAECYRRAEDYGRLHKLASNSDERETLWITRQRFFLLAKVLEGKLGKLRSARARKGKKLRSRLSQLERC*
Ga0137419_119083282	3300012925	Vadose Zone Soil	MPYSLKEHIAECYLRAEDYGRLRKLASNSDERETLWITRQRFLLLAKVLERKLGKLQSARARKGKKLRSRLSQLERC*
Ga0137416_104989972	3300012927	Vadose Zone Soil	MTYSLKEHIAECYRRAEDYGRLRKLTSNSDERETLWITRQRFLLLAKVLEGKLGKLQSARARKGKKLRSRLSQLERC*
Ga0137404_105661192	3300012929	Vadose Zone Soil	MTYSLKEHIAECYRRAEDYGRLHKLASNSDERETLWITRQRFFLLAKVLEGKLGKLQSARARKGKKLRSRLSQLERC*
Ga0137407_114706343	3300012930	Vadose Zone Soil	MPYSLKEHIAECYRRAEEYGQLHKRASNSKERDTLWFTRQHFLLLAKVLERKLSKLQAAPGRKNKKLKSA*
Ga0162653_1000234621	3300012937	Soil	MPYSLKEHIAECYRRAEDYGRLRKLASNSNERETLWITRQRFLLLAKVLEGKLGKLQSARARKGKKLRSRLSQLERC*
Ga0137410_100086905	3300012944	Vadose Zone Soil	MMPYSLKEHVAECYRRADEYGRLHQRASNSKERETFWFTRQHFLLLAGVLERKLSKLQAAPRRSVGKLRSGGVRRHLSKAARPL*
Ga0126375_100104685	3300012948	Tropical Forest Soil	MPYSLKEHVAECYRRAEDYGRLCQRASNSKERETLWFTRQHFLLLAKVLERKLSMPQAAPGRNGKKLPGRRDKKLRRA*
Ga0126375_100338823	3300012948	Tropical Forest Soil	MPYSLKEHIAECYRRAEEFAQLHKKASKSEERGILWTTRQHFLLLAQALERKLQGAPRQRTRKLRNA*
Ga0126375_101073912	3300012948	Tropical Forest Soil	MPYNLKEHVAECYRRAEDYGRLYQRASTSKERETLWFTRQHFLLLAKVLERKLSKPQAAPGRNSKKLPGRRGKKLRRA*
Ga0126375_103389241	3300012948	Tropical Forest Soil	MPYNLKEHIAECYRRAEEFGRLHKRASNSDERETLWTTKQHFLLLAKALERKLSKLHEASKRRTTKLRSA*
Ga0126375_107734131	3300012948	Tropical Forest Soil	RRAEDYGRLCQRASNSKERETLWFTKQHFLLLAKVLERKLSKPQEAPRNGKKPTGRRDKKLRS*
Ga0126375_108512072	3300012948	Tropical Forest Soil	MPYSLKDHIAECYRRAEEFGQLHKRASKLEERETLWTTRQHFLLLAKALERKLSNLQEAP
Ga0126375_115504622	3300012948	Tropical Forest Soil	GWERMMPYSLKEHIAECYRRAEEFAQLHKKASKSEERGILWTTRQHFLLLAQALERKLQEAPRQRTRKLTSA*
Ga0126369_101202512	3300012971	Tropical Forest Soil	MPVRLKEHIAECYRRAEDYGRLQKRASNLDERETLWARRQHFLLLARDLERKLSELQLAPRRRAKTLRSERAIRRP*
Ga0126369_115819432	3300012971	Tropical Forest Soil	MMPYSLKEHIAECYRRAEEYGRLHQRASNSEERDTLRTTRQHFLLLAKVLERKLDKLQTAPMRRGKKL
Ga0137412_110731971	3300015242	Vadose Zone Soil	MMPYSLKEHIAECYRRAEEYGQLHKRASNSEERETLRTTKQHFFLLAKVLERKLSKLQAASGRSIRKLRSGLVRRRFSKAARLLSLSEVAG
Ga0132258_120535633	3300015371	Arabidopsis Rhizosphere	MPYSLKEHIAECYRRAEDYRRLHKRASKSDEREILWITRQRFLLLAKLLEGRLSKLQAVRARKSKKAA*
Ga0184610_12389702	3300017997	Groundwater Sediment	MPYSLKEHIAECYRRAEDYGRLRKLASKSDERETLWITRQRFLLLAKVLEGKLGKLQSARARKGKKLRSRLSQLERC
Ga0184608_100402554	3300018028	Groundwater Sediment	MPYSLKEHIAECYRRAEEYGRLRKLASNSDERETLWITRQRFLLLAKVLEGKLGKLQSARARKGKKLRSRLSQLERW
Ga0184608_101354042	3300018028	Groundwater Sediment	MPYSLKEHIAECYRRAEEYGRLHKRASNSDERETLWTTKQHFFLLAKVLERKLSKLQAAPGRRLRKQGAGEFGDA
Ga0184620_100144615	3300018051	Groundwater Sediment	MPYSLKEHIAECYRRAEDYGRLRKLASNSDERETLWITRQRFLLLAKVLEGKLGKLQSARARKGKKLRSRLSQLERC
Ga0184617_10097624	3300018066	Groundwater Sediment	MPYSLKEHIAECYRRAEEYGRLHKRASNSEERETLWTTKQHFFLLAKVLERKLGKLQAAPGRRLRKLRSG
Ga0184635_104035322	3300018072	Groundwater Sediment	WAWEATMPYSLKKRITECYRRAEDYGRLHKRALNPKERDMLWFTRQHFLLLAKVLERKLNTLEAAPRRRDKKLKSA
Ga0184632_102398802	3300018075	Groundwater Sediment	WAWEATMPYSLKKRITECYRRAEEYGRLHKRASNPKERDMLWFTRQHFLLLAKVLERKLSKLQAAPRRRAKKLKSA
Ga0184609_101557082	3300018076	Groundwater Sediment	DSGHGEGMMPYSLKEHIAECYRRAEEYGRLHKRASNSEERETLWTTKQHFFLLAKVLERKLSKLQAAPGRSVRKLRTG
Ga0184609_101696342	3300018076	Groundwater Sediment	MPYSLKEHIAECYRRAEDYGRLRQTASSSKERETLWFSRQHFLLLAKVLERKLSKLQAAPERTDKKLPGQRDTKLTGRRDKKL
Ga0179594_101830472	3300020170	Vadose Zone Soil	MPYSLKEHIAECYRRAEDYGRLRRLASNSDERETLWITRQRFLLLAKVLEGKLGKLQSARARKGKKLRSRLSQLERC
Ga0179594_101934281	3300020170	Vadose Zone Soil	MMPYSLKEHIAECYRRAEEYGRLHKRASNSEERETLWTTKQHFFLLAKVLERKLSKLQAAPGLRLRKLRSG
Ga0222622_111351071	3300022756	Groundwater Sediment	PDGASMLKKISSGFWAWEGTMPYSLKVHVAECYRRAEDYGRLQKRASNSNERDTLWTARQHFLLLAKVLERKVSDPQAAPRQRTKKLRSVSA
Ga0179589_102005722	3300024288	Vadose Zone Soil	MPYSLKEHIAECYRRAEDYGRLRKLASNSDERETLWIARQHFLLLAKVLEGKLGKLQSARARKGKKLRSRLSQLERC
Ga0209179_10335671	3300027512	Vadose Zone Soil	MTYSLKEHIAECYRRAEDYGRLHKLASNSDERETLWITRQRFFLLAKVLEGKLGKLRSARARKGKKLRSRLSQLERC
Ga0209466_10712831	3300027646	Tropical Forest Soil	MPYSLKEHIAECYRRAADYGRLHQRASNPKERETLWFTRQHFLLLAKVLERKLSKPHAAPGRNGKKLPGRRDKKKA
Ga0209465_102919411	3300027874	Tropical Forest Soil	VRDPGAWEGMMPYSLKDHIAECYRRAEEFGQLHKRASKLEERETLWTTRQHFLLLAKALERKLSNLQEAPRRRTKKLRSELSP
Ga0209465_106904391	3300027874	Tropical Forest Soil	MPYSLKEHIAECYRRADDYGRLHQRASNSKERETLWFTRQHFLLLAKVLERKLSKLQALPRRRD
Ga0209488_100115223	3300027903	Vadose Zone Soil	MPYSLKEHIAECYRRAEEYGQLHKRASNSEERETLRTTKQHFFLLAKVLERKLSKLEAAPRWRDKKLRSG
Ga0307301_100291854	3300028719	Soil	MPYSLKEHIAECYRRAEDYGRLRKLASNSDERETLWITRQRFLLLAKVLEGKLGKLQSTRARKGKKLRSRLSQLE
Ga0308187_100416261	3300031114	Soil	SGHGEGMMPYSLKEHIAECYRRAEEYGRLHKRASNSEERETLWTTKQHFFLLAKVLERKLSKLQAASGRSVRKLRSG
Ga0308187_101895241	3300031114	Soil	EGMMPYSLKEHIAECYRRAEEYGRLHKRASNSEERETLWTTKQHFFLLAKVLERKLGKLQAAPGRRLRKLRSG
Ga0307501_100491412	3300031152	Soil	MPYSLKEHIAECYRRAEDYGRLRKLASNSDERETLWITRQHFLLLAKVLEGKLGKLQSARARKGKKLRSRLS
Ga0307499_100295442	3300031184	Soil	MPYSLKEHIAECYRRSEDYGRLHKLASNSDERETLWITRQRFLLLAKVLEGKLDKLQSVRARKGKKLRSRLSQLERC
Ga0307500_101706111	3300031198	Soil	MPYSLKEHIAECYRRSEDYGRLHKLASNSDERETLWITRQHFLLLAKVLEGKLDKLQSVRARKGKKLRSRLSQLERC
Ga0307469_100460321	3300031720	Hardwood Forest Soil	MPYSLKEHIAECYRRAEDYGRLHQIASDSKERETLWFTRQHFLLLAKVLERKLGKLQAVPRRRDKKLPGRRARS
Ga0307469_123423991	3300031720	Hardwood Forest Soil	MPYSLKEHIVECYRRAEDYGRLHKLASNLDERETLWTTRQHFLLLAKVLEGKLGKPQSARARKGKKL
Ga0307470_104932711	3300032174	Hardwood Forest Soil	MPYSLKVHVAECYRRAEDYGRLCQSASNSKERETLWFTKQHFLLLAKVLERKLGKLQAAPGRRDTKLTARRAKKLTERRA
Ga0307470_106173471	3300032174	Hardwood Forest Soil	MPYSLKEHIAECYRRAEDYGRLHQKASNSKERETLWFTRQHFLLLAKVLERKISKLQAASRRRDKKLARPKKLRSA
Ga0307471_1014682832	3300032180	Hardwood Forest Soil	MPYSLKEHVAECYRRAEDYGRLCQGASNSKERETLWFTSQHFLLLAKVLERKLGKLQAAPGRRDRKLAG
Ga0307472_1020280211	3300032205	Hardwood Forest Soil	MPYSLKEHIAECNRRAEDYGRLHQRASNSKERETLWFTRQHFLLLAKVLERKLSKLQAAPERTDKKL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F070877

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences