NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F070965

Metagenome Family F070965

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F070965
Family Type Metagenome
Number of Sequences 122
Average Sequence Length 56 residues
Representative Sequence MVIRFRRRAKKEIRLESHPSGLNRTGAGRLSRREIEHRERMLRHLARTLKAG
Number of Associated Samples 94
Number of Associated Scaffolds 122

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 44.26 %
% of genes near scaffold ends (potentially truncated) 28.69 %
% of genes from short scaffolds (< 2000 bps) 87.70 %
Associated GOLD sequencing projects 87
AlphaFold2 3D model prediction Yes
3D model pTM-score0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (72.951 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(14.754 % of family members)
Environment Ontology (ENVO) Unclassified
(28.689 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(54.918 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 25.00%    β-sheet: 0.00%    Coil/Unstructured: 75.00%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.38
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 122 Family Scaffolds
PF13328HD_4 36.89
PF09972DUF2207 24.59
PF04073tRNA_edit 3.28
PF03330DPBB_1 0.82
PF13847Methyltransf_31 0.82
PF07228SpoIIE 0.82


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms72.95 %
UnclassifiedrootN/A27.05 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2162886012|MBSR1b_contig_6951275All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1144Open in IMG/M
3300000956|JGI10216J12902_100298502All Organisms → cellular organisms → Bacteria4748Open in IMG/M
3300000956|JGI10216J12902_104962561Not Available1098Open in IMG/M
3300000956|JGI10216J12902_110200126All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium517Open in IMG/M
3300001686|C688J18823_10864387Not Available574Open in IMG/M
3300004114|Ga0062593_100069776All Organisms → cellular organisms → Bacteria2316Open in IMG/M
3300004114|Ga0062593_100561192Not Available1077Open in IMG/M
3300004153|Ga0063455_100902549All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium626Open in IMG/M
3300004156|Ga0062589_100179568All Organisms → cellular organisms → Bacteria1498Open in IMG/M
3300004157|Ga0062590_102132209All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium585Open in IMG/M
3300004157|Ga0062590_102267663All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium570Open in IMG/M
3300004480|Ga0062592_100050979All Organisms → cellular organisms → Bacteria2248Open in IMG/M
3300004480|Ga0062592_100319588All Organisms → cellular organisms → Bacteria1187Open in IMG/M
3300004480|Ga0062592_100980382All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium770Open in IMG/M
3300005293|Ga0065715_10107726All Organisms → cellular organisms → Bacteria2738Open in IMG/M
3300005293|Ga0065715_10113941All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2469Open in IMG/M
3300005293|Ga0065715_10116570All Organisms → cellular organisms → Bacteria2376Open in IMG/M
3300005337|Ga0070682_100236757All Organisms → cellular organisms → Bacteria1308Open in IMG/M
3300005338|Ga0068868_100119596All Organisms → cellular organisms → Bacteria2148Open in IMG/M
3300005356|Ga0070674_100635336All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium906Open in IMG/M
3300005366|Ga0070659_101863970All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium539Open in IMG/M
3300005440|Ga0070705_100654821All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium819Open in IMG/M
3300005441|Ga0070700_101374049All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium596Open in IMG/M
3300005444|Ga0070694_100711493All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium817Open in IMG/M
3300005454|Ga0066687_10141437All Organisms → cellular organisms → Bacteria1263Open in IMG/M
3300005458|Ga0070681_11542309Not Available589Open in IMG/M
3300005548|Ga0070665_102550477All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium512Open in IMG/M
3300005564|Ga0070664_100436846All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1200Open in IMG/M
3300005577|Ga0068857_101283973Not Available710Open in IMG/M
3300005764|Ga0066903_105790801Not Available649Open in IMG/M
3300005937|Ga0081455_11056965All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium502Open in IMG/M
3300005938|Ga0066795_10244735Not Available531Open in IMG/M
3300006046|Ga0066652_100001566All Organisms → cellular organisms → Bacteria11970Open in IMG/M
3300006046|Ga0066652_100191393All Organisms → cellular organisms → Bacteria1753Open in IMG/M
3300006845|Ga0075421_100314562Not Available1900Open in IMG/M
3300006847|Ga0075431_101530187All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium625Open in IMG/M
3300006880|Ga0075429_101554879All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium575Open in IMG/M
3300006904|Ga0075424_101607215Not Available689Open in IMG/M
3300009029|Ga0066793_10060151Not Available2163Open in IMG/M
3300009094|Ga0111539_11822288All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium706Open in IMG/M
3300009094|Ga0111539_11927003All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium685Open in IMG/M
3300009094|Ga0111539_12143308All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium648Open in IMG/M
3300009147|Ga0114129_12771717All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium583Open in IMG/M
3300009156|Ga0111538_10863899Not Available1145Open in IMG/M
3300009156|Ga0111538_14129596All Organisms → cellular organisms → Bacteria501Open in IMG/M
3300009609|Ga0105347_1245456All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium734Open in IMG/M
3300009610|Ga0105340_1488680All Organisms → cellular organisms → Bacteria550Open in IMG/M
3300009610|Ga0105340_1543203All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium519Open in IMG/M
3300009840|Ga0126313_10824766All Organisms → cellular organisms → Bacteria755Open in IMG/M
3300010039|Ga0126309_10452870All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium780Open in IMG/M
3300010398|Ga0126383_10340731Not Available1515Open in IMG/M
3300010399|Ga0134127_12971286All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium553Open in IMG/M
3300010400|Ga0134122_10080116Not Available2553Open in IMG/M
3300010403|Ga0134123_11829219All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium661Open in IMG/M
3300012204|Ga0137374_10321250All Organisms → cellular organisms → Bacteria1261Open in IMG/M
3300012204|Ga0137374_10960382All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium622Open in IMG/M
3300012207|Ga0137381_10504617Not Available1055Open in IMG/M
3300012209|Ga0137379_10214197All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1841Open in IMG/M
3300012211|Ga0137377_10892494All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 21-71-4821Open in IMG/M
3300012212|Ga0150985_100779880Not Available603Open in IMG/M
3300012212|Ga0150985_104622468All Organisms → cellular organisms → Bacteria1115Open in IMG/M
3300012212|Ga0150985_113865986All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1701Open in IMG/M
3300012355|Ga0137369_10834730All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium625Open in IMG/M
3300012469|Ga0150984_104299343Not Available591Open in IMG/M
3300012469|Ga0150984_104718333All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium580Open in IMG/M
3300012469|Ga0150984_114232684Not Available765Open in IMG/M
3300012469|Ga0150984_115744724All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium512Open in IMG/M
3300012532|Ga0137373_10893648All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium652Open in IMG/M
3300012680|Ga0136612_10027358All Organisms → cellular organisms → Bacteria2852Open in IMG/M
3300012684|Ga0136614_10992122All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium578Open in IMG/M
3300012900|Ga0157292_10346198All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium548Open in IMG/M
3300012906|Ga0157295_10114864Not Available759Open in IMG/M
3300012907|Ga0157283_10045210All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium983Open in IMG/M
3300012985|Ga0164308_11899570All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium555Open in IMG/M
3300012989|Ga0164305_10766938Not Available796Open in IMG/M
3300013764|Ga0120111_1124618All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium598Open in IMG/M
3300014969|Ga0157376_12272673All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium581Open in IMG/M
3300015201|Ga0173478_10725746All Organisms → cellular organisms → Bacteria535Open in IMG/M
3300015371|Ga0132258_10619854All Organisms → cellular organisms → Bacteria2718Open in IMG/M
3300015371|Ga0132258_11329992Not Available1816Open in IMG/M
3300015371|Ga0132258_12543913All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1280Open in IMG/M
3300015371|Ga0132258_13204319All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1129Open in IMG/M
3300015371|Ga0132258_13789692All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1030Open in IMG/M
3300015373|Ga0132257_101980136All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium751Open in IMG/M
3300015374|Ga0132255_100587521Not Available1645Open in IMG/M
3300015374|Ga0132255_101623469Not Available980Open in IMG/M
3300017965|Ga0190266_10591641All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium669Open in IMG/M
3300018431|Ga0066655_11126609All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium551Open in IMG/M
3300018476|Ga0190274_10698961All Organisms → cellular organisms → Bacteria1058Open in IMG/M
3300018481|Ga0190271_10285315All Organisms → cellular organisms → Bacteria1704Open in IMG/M
3300019356|Ga0173481_10396159Not Available674Open in IMG/M
3300019362|Ga0173479_10696221Not Available547Open in IMG/M
3300022756|Ga0222622_10371561All Organisms → cellular organisms → Bacteria1001Open in IMG/M
3300025893|Ga0207682_10360031Not Available686Open in IMG/M
3300025901|Ga0207688_10146844Not Available1391Open in IMG/M
3300025903|Ga0207680_11072317All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium576Open in IMG/M
3300025910|Ga0207684_11187802All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium632Open in IMG/M
3300025911|Ga0207654_10264435All Organisms → cellular organisms → Bacteria1158Open in IMG/M
3300025930|Ga0207701_11499579All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium546Open in IMG/M
3300025932|Ga0207690_10728284Not Available817Open in IMG/M
3300025932|Ga0207690_11642579All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium537Open in IMG/M
3300025937|Ga0207669_10270135Not Available1277Open in IMG/M
3300025938|Ga0207704_11564899All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium566Open in IMG/M
3300025945|Ga0207679_10368868All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1256Open in IMG/M
3300026118|Ga0207675_100359670Not Available1428Open in IMG/M
3300026142|Ga0207698_10839474All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium923Open in IMG/M
3300026142|Ga0207698_11963803Not Available600Open in IMG/M
3300026319|Ga0209647_1021441All Organisms → cellular organisms → Bacteria3986Open in IMG/M
3300026319|Ga0209647_1094671All Organisms → cellular organisms → Bacteria1438Open in IMG/M
3300027909|Ga0209382_10546092All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1270Open in IMG/M
3300028768|Ga0307280_10322235Not Available567Open in IMG/M
3300028784|Ga0307282_10022152All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2682Open in IMG/M
3300028790|Ga0307283_10008947All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1869Open in IMG/M
3300028802|Ga0307503_10094935All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1258Open in IMG/M
3300028828|Ga0307312_10012110All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium4771Open in IMG/M
3300031854|Ga0310904_10326671All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium981Open in IMG/M
3300031944|Ga0310884_10510150All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium707Open in IMG/M
3300031944|Ga0310884_10518986All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium702Open in IMG/M
3300032013|Ga0310906_11192463Not Available553Open in IMG/M
3300032157|Ga0315912_10607757All Organisms → cellular organisms → Bacteria871Open in IMG/M
3300032163|Ga0315281_10790666All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium980Open in IMG/M
3300033412|Ga0310810_11419729Not Available527Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil14.75%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere9.02%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil6.56%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere6.56%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil5.74%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil4.92%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere4.10%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil3.28%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.28%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere3.28%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere3.28%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil2.46%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil2.46%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil2.46%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere2.46%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere2.46%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere2.46%
Polar Desert SandEnvironmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand1.64%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil1.64%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil1.64%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere1.64%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere1.64%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere1.64%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment0.82%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.82%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil0.82%
PermafrostEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost0.82%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere0.82%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Soil0.82%
Prmafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil0.82%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.82%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere0.82%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.82%
Corn, Switchgrass And Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.82%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.82%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.82%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2162886012Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1Host-AssociatedOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300001686Grasslands soil microbial communities from Hopland, California, USAEnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004153Grasslands soil microbial communities from Hopland, California, USA (version 2)EnvironmentalOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300004157Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2EnvironmentalOpen in IMG/M
3300004480Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4EnvironmentalOpen in IMG/M
3300005293Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1Host-AssociatedOpen in IMG/M
3300005337Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaGEnvironmentalOpen in IMG/M
3300005338Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2Host-AssociatedOpen in IMG/M
3300005356Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaGHost-AssociatedOpen in IMG/M
3300005366Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaGHost-AssociatedOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005441Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaGEnvironmentalOpen in IMG/M
3300005444Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaGEnvironmentalOpen in IMG/M
3300005454Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136EnvironmentalOpen in IMG/M
3300005458Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaGEnvironmentalOpen in IMG/M
3300005548Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaGHost-AssociatedOpen in IMG/M
3300005564Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaGHost-AssociatedOpen in IMG/M
3300005577Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2Host-AssociatedOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005937Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1Host-AssociatedOpen in IMG/M
3300005938Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-191EnvironmentalOpen in IMG/M
3300006046Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101EnvironmentalOpen in IMG/M
3300006845Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5Host-AssociatedOpen in IMG/M
3300006847Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5Host-AssociatedOpen in IMG/M
3300006880Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3Host-AssociatedOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300009029Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189EnvironmentalOpen in IMG/M
3300009094Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009609Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890EnvironmentalOpen in IMG/M
3300009610Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700EnvironmentalOpen in IMG/M
3300009840Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105AEnvironmentalOpen in IMG/M
3300010039Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300012204Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012355Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaGEnvironmentalOpen in IMG/M
3300012469Combined assembly of Soil carbon rhizosphereHost-AssociatedOpen in IMG/M
3300012532Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012680Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ224A (23.06)EnvironmentalOpen in IMG/M
3300012684Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ279 (21.06)EnvironmentalOpen in IMG/M
3300012900Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S179-409R-1EnvironmentalOpen in IMG/M
3300012906Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1EnvironmentalOpen in IMG/M
3300012907Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1EnvironmentalOpen in IMG/M
3300012985Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MGEnvironmentalOpen in IMG/M
3300012989Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MGEnvironmentalOpen in IMG/M
3300013764Permafrost microbial communities from Nunavut, Canada - A28_35cm_6MEnvironmentalOpen in IMG/M
3300014969Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaGHost-AssociatedOpen in IMG/M
3300015201Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)EnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300017965Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 TEnvironmentalOpen in IMG/M
3300018431Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104EnvironmentalOpen in IMG/M
3300018476Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 TEnvironmentalOpen in IMG/M
3300018481Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 TEnvironmentalOpen in IMG/M
3300019356Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)EnvironmentalOpen in IMG/M
3300019362Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)EnvironmentalOpen in IMG/M
3300022756Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1EnvironmentalOpen in IMG/M
3300025893Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025901Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)Host-AssociatedOpen in IMG/M
3300025903Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025911Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025930Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)EnvironmentalOpen in IMG/M
3300025932Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025937Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025938Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025945Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026118Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026142Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026319Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)EnvironmentalOpen in IMG/M
3300027909Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)Host-AssociatedOpen in IMG/M
3300028768Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119EnvironmentalOpen in IMG/M
3300028784Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121EnvironmentalOpen in IMG/M
3300028790Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_122EnvironmentalOpen in IMG/M
3300028802Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_SEnvironmentalOpen in IMG/M
3300028828Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202EnvironmentalOpen in IMG/M
3300031854Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1EnvironmentalOpen in IMG/M
3300031944Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1EnvironmentalOpen in IMG/M
3300032013Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3EnvironmentalOpen in IMG/M
3300032157Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soilEnvironmentalOpen in IMG/M
3300032163Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0EnvironmentalOpen in IMG/M
3300033412Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NCEnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
MBSR1b_0446.000038902162886012Miscanthus RhizosphereMVIRFPRRAKKEIRLETHPSGLNRTGPRRLSRREIEHRERMIQHLARTLKAG
JGI10216J12902_10029850283300000956SoilMIIRFPSRKKEDRLESHPSGLNRTGARSLTPREIEHRLRMLEHLRRTRPGQAQ*
JGI10216J12902_10496256133300000956SoilVIRFPLRLKPGPLKPLKEVRLESHPSGLNRTGARRLSKQEIVHRERMLEYLQRIGQRQ*
JGI10216J12902_11020012613300000956SoilMVIRFINSFTRKREDRLESHPSGLNRTDARRLSRREIEHRERMLAHLQ
C688J18823_1086438713300001686SoilLSRIVFRVNGMVIRFPLRSRPKDERLESHPSGLNRTDDRRLSAREALHRERMLRHLEQLERAAAQ*
Ga0062593_10006977623300004114SoilMVIRFQRRANKEIRLETHPSGLNRTGPRRLSRREIEHRERMLHHLARTNRRTLEPLEP*
Ga0062593_10056119223300004114SoilMVIRFPRLRLATFSSVRKRQDEVRLESHPSGLNRTDARRLSRREVEHRERMLRHLELVHRDR*
Ga0063455_10090254923300004153SoilMLIRFSLRRKPKELRLETHPSGLNRTGARRLSAREIVHRERMLQHLARLARQ*
Ga0062589_10017956813300004156SoilMVIRFQRRAKKEVRLESHPSGLNRTGAGRLSRREIEHRERMLRHLARTLKAG*
Ga0062590_10213220923300004157SoilMVIRFSLRRAAAVKGDQPGEDVRLETHPSGLNRTGARRLSKREIVHRERMLEHLHRIGRSQ*
Ga0062590_10226766313300004157SoilMVIRFPLRQKAARESRLESHASGLNRTDDRRLSKREIVHRERMLEHLQRIGRSQ*
Ga0062592_10005097913300004480SoilCLSQRAVSIFTMVIRFQRRANKEIRLETHPSGLNRTGPRRLSRREIEHRERMLHHLARTNRRTLEPLEP*
Ga0062592_10031958823300004480SoilMVIRFLSRKKEDRLESHPSGLNRTDARRLSRREIEHRERMLEHLRRTQPDPAQ*
Ga0062592_10098038223300004480SoilMIIRFSSRKKEDRLESHPSGLNRIDARRLSRREIEHRLRMLEHLRRTQPDPAQ*
Ga0065715_1010772643300005293Miscanthus RhizosphereMVIRFPRRAKKEIRLETHPSGLNRTGPRRLSRREIEHRERMIQHLARTLKAG*
Ga0065715_1011394123300005293Miscanthus RhizosphereMVIRFPSRKKEDRLESHPTGLNRTGPRRLTRREIEHRERMLRHLQLVERHRSAS*
Ga0065715_1011657043300005293Miscanthus RhizosphereMVIRFRRRAKKEIRLESHPSGLNRTGAGRLSRREIEHRERMLRHLARTLKAG*
Ga0070682_10023675733300005337Corn RhizosphereMVIRFRRRAKKEIRLESHPSGLNRTGAGRLSRREIEHRERMLRHLARTPKAG*
Ga0068868_10011959623300005338Miscanthus RhizosphereMVIRFRRRAKKETRLESHPSGLNRTGAGRLSRREIEHRERMLRHLARTLKAG*
Ga0070674_10063533623300005356Miscanthus RhizosphereMVIRFPRLRLATFSSVRKQQGEVRLESHPSGLNRTDARRLSRREVEHRERMLRHLELVHRDR*
Ga0070659_10186397013300005366Corn RhizosphereADSIFSMVIRFRRRAKKEIRLESHPSGLNRTGAGRLSRREIEHRERMLRHLARTLKAG*
Ga0070705_10065482113300005440Corn, Switchgrass And Miscanthus RhizosphereMVIRFPTRKRKMEDRLETHPSGLNRTDGRRLSSREIEHRERMLQHLQRTYEPRNLEPLE
Ga0070700_10137404913300005441Corn, Switchgrass And Miscanthus RhizosphereMVIRFLSRKKEDRLESHPSGLNRTDPRRLSRREIEHRERMLEHLRRTQPDPAQ*
Ga0070694_10071149313300005444Corn, Switchgrass And Miscanthus RhizosphereMVIRFPRRAKKEIRLETHPSGLNRTGPRRLSRREIEHRERMIQHLARTLK
Ga0066687_1014143713300005454SoilMVIRFPLRQKAARESRLESHPSGLNRTDDRRLSKREIVHRERMLEHLRRIEVVRTS*
Ga0070681_1154230923300005458Corn RhizosphereFSMVIRFRRRAKKETRLESHPSGLNRTGAGRLSRREIEHRERMLRHLARTLKAG*
Ga0070665_10255047713300005548Switchgrass RhizosphereIFSMVIRFRRRAKKEIRLESHPSGLNRTGAGRLSRREIEHRERMLRHLARTLKAG*
Ga0070664_10043684613300005564Corn RhizosphereMVIRFIVEQVGRAGRRRAQGDRLETHPSGLNRTDARRLSRREIAHRERML
Ga0068857_10128397323300005577Corn RhizosphereAVMVIRFLSRKKEDRLESHPSGLNRTDARRLSRREIEHRERMLEHLRRTQPDPRQ*
Ga0066903_10579080123300005764Tropical Forest SoilCSKPRVTAKDRRLESHPSGLNRTDRRRLSAREIVHRERMLRHLQELARAAAQ*
Ga0081455_1105696523300005937Tabebuia Heterophylla RhizosphereVIRFPLRRQSRPLLQQLLDGDRLETHASGLNRTDSRRLSARELLHRERMLRHLERLTRAAQ*
Ga0066795_1024473513300005938SoilMVIRFRLRHNGKTVKEDRLESHPSGLNRTDARRLSKQEIVHRERMLEHLQRTENLRTP*
Ga0066652_100001566133300006046SoilMVIRFPRLRLATLSFVSGRRDEARLETHPSGLNRTDARRLSRREIEHRERMLRHLELVYRDR*
Ga0066652_10019139333300006046SoilVWDMLIRFPFRRKPALLEEDDRRLASHPSGLNRTDARRLSAREIEHRERMLRHLEQLARAAQ*
Ga0075421_10031456223300006845Populus RhizosphereMVIRFTLFSNRQKEDRLETHPSGLNRTDDRRLGRREIEHRERMLEHLRRTLPDSNSPFPAR*
Ga0075431_10153018723300006847Populus RhizosphereMVIRFTLFSNRQNEDRLETHPSGLNRTDDRRLGRREIEHRERMLEHLRRTLPDSNSPFPAR*
Ga0075429_10155487923300006880Populus RhizosphereMVIRFPLRRQSRPLLQQLLDGDRLETHASGLNRTDSRRLSARELLHRERMLRHLERLARAAQ*
Ga0075424_10160721513300006904Populus RhizosphereMVIRFPLRPKPKDVRLETHPSGLNRTDSRRLSARELLHRERMLRHLAQLERRTS*
Ga0066793_1006015133300009029Prmafrost SoilMVIRFRLRHNGKTVKEDRLESHPSGLNRTDARRLSKQEIVHRERMLEHLQRTENLRTS*
Ga0111539_1182228823300009094Populus RhizosphereVFSIFIMVIRFPRRAKKEIRLETHPSGLNRTGPRRLSRREIEHRERMIQHLARTLKAG*
Ga0111539_1192700323300009094Populus RhizosphereMVIRFPLRPKPREVRLESHPSGLNRTDARRLTSREVVHRERMLEHLHRLERRKTS*
Ga0111539_1214330813300009094Populus RhizosphereMVIRFPLRLKPREIRLESHPSGLNRTDERRLSRREVVHRERMLEHLQRLELRKTS*
Ga0114129_1277171713300009147Populus RhizosphereMIIRFPSRKKEDRPESHASGLNRTGARPLSRREIEHRQRMLEHL
Ga0111538_1086389923300009156Populus RhizosphereMVIRFPLRLKPREVRLESHPSGLNRTDARRLTRREVVHRERMLEHLHRLELRKTS*
Ga0111538_1412959613300009156Populus RhizosphereMIIRFPSRKKEDRLESHASGLNRTGARRLSRREIEHRLRMLEHLRRTRLDAAQ*
Ga0105347_124545623300009609SoilMVIRFPLRLEPREVRPESHPSGLNRTDARRLSSQEIVHRERMLRHLQLTRPSRVAAEARKR*
Ga0105340_148868023300009610SoilMVISFPLRLKPREIRLESHPSGLNRTDARRLTRREVVHRERMLQ
Ga0105340_154320313300009610SoilMVIRFPLRLKPREVRLESHPSGLNRTDARRLSRREVVHRERMLEHLQRIELRKTS*
Ga0126313_1082476613300009840Serpentine SoilMVIRFPSRQKPREVRLESHPSGLNRTGARRLSKEEIVHRERMLEYLQRLEHRRTS*
Ga0126309_1045287023300010039Serpentine SoilMVIRFPLRQKAAKTAVKEVRLESHPSGLNRTDDRRLSKREIVHRERMLEYLQRLEHRRTS
Ga0126383_1034073123300010398Tropical Forest SoilMVIRFPFRSKSSAAAAVADGELRLESHPSGLNRTDSRRLSAREIAHRERMLRHLEQIGRAAQ*
Ga0134127_1297128613300010399Terrestrial SoilMVVRFMARALRQKENRLETHPSGLNRTDARRLSRREIEHRERMLAHLHRLSVAHFALDRA
Ga0134122_1008011633300010400Terrestrial SoilMVIRFRRRAKKEIRLDSHPSGLNRTGAGRLSRREIEHRERMLRHLARTLKAG*
Ga0134123_1182921923300010403Terrestrial SoilMVIRFPLRRQSRPLLQQLLDGDRLETHASGLNRTDSRRLSARELLHRERMLR
Ga0137374_1032125013300012204Vadose Zone SoilMVIRFMTRATRREDRLESHPSGLNRTDARRLSRREIEHRERMLEHLQRLSVTH
Ga0137374_1096038223300012204Vadose Zone SoilMVIRFPPRRRVETVKEDRLESHPSGLTRTDDRRLSKQEIVHRERMLEHLQRTGRSQ*
Ga0137381_1050461723300012207Vadose Zone SoilMVIRFPLRSRLLTKPLNRLKPHAPGLDRTDARRLNRREIEHRERMLEHLQVLERRTS*
Ga0137379_1021419723300012209Vadose Zone SoilMVIRFPLRPRLLTKPENRLEPHAPGLNRTDARRLNRREIEHRERMLRHLQVLERRTS*
Ga0137377_1089249423300012211Vadose Zone SoilMVIRFPRLRLATPSCGDRLETHPSGLNRTDSRRLTRREIEHRERMLRHLQVIERHRSVSDSQS*
Ga0150985_10077988023300012212Avena Fatua RhizosphereMVIRFPVRSKPKEQRLETHPSGLNRLDDRRLSAREQLHRERMLQHLARLERAQ*
Ga0150985_10462246813300012212Avena Fatua RhizospherePDLSRATDNLAIMVIRFQFRPRKENRLESHPSGLNRRGAGDLSRREVEHRERMLRHLARTLDPRSFEPR*
Ga0150985_11386598623300012212Avena Fatua RhizosphereMVIRFQFRPRKENRLESHPSGLNRRGAGRLSRREVEHRERMLRHLARTLDSRSLEPR*
Ga0137369_1083473013300012355Vadose Zone SoilMVIRFSLRPRVETVKDDRLESHPSGLNRTDDRRLSKQEIVHRERML*
Ga0150984_10429934323300012469Avena Fatua RhizosphereMVIRFSLRREPKEQRLETHPSGLNRTGARRLSPRDKLHRERMLRHLARLERAAAHQ*
Ga0150984_10471833323300012469Avena Fatua RhizosphereMVIRFQFRPRKENRLESHPSGLNRRGAGRLSRREVEHRERMLRHLARTLDSRSLAPR*
Ga0150984_11423268413300012469Avena Fatua RhizosphereLRRTSPPKEDRLESHPSGLNRTDSRRLSAREVVHRERMLRHLAHLDRLERAAQ*
Ga0150984_11574472423300012469Avena Fatua RhizosphereFSLRRKPKELRLETHPSGLNRTGARRLSAREIVHRERMLQHLARLARQ*
Ga0137373_1089364813300012532Vadose Zone SoilMVIRFSLRPRVETVKDDRLESHPSGLNRTDDRRLSKQEIVHRERMLEHLQRTGRSQ*
Ga0136612_1002735823300012680Polar Desert SandMVIRFPLRPKTQESREVRLESHPSGLNRTDARRLSTREVVHRERMLQHLYRTQHVTQ*
Ga0136614_1099212213300012684Polar Desert SandMVIRFPLRQKPREIRLESHPSGLNRTGARRLSKQEIVHRERMLEYLQRTEHRQ
Ga0157292_1034619823300012900SoilMVIRFPFRQKPREVRLESHPSGLNRTGARRLSKEEIVHRERMLEYLQRTGRQ*
Ga0157295_1011486413300012906SoilALSRRPGRVANMVIRFPLRLKPREVRLESHPSGLNRTDARRLTRREVVHRERMLEHLHRLELRKTS*
Ga0157283_1004521023300012907SoilMVIRFPRRANKEIRLETHPSGLNRTGPRRLSRREIEHRERMLHHLARTNRRTVEP*
Ga0164308_1189957013300012985SoilPGLSRRPGNVWDMLIRFPFRRKPALLEEDDRRLESHPSGLNRTDARRLSAREIEHRERMLRHLEQLARAAQ*
Ga0164305_1076693823300012989SoilMVIRFPFMAKKEIRLESHPSGLNRTGPRRLSRREIEHRERMLRHLARVSEPSILRSLR*
Ga0120111_112461823300013764PermafrostMVIRFRLRHNVKKVKEDRLESHPSGLNRTPPSDDRRLTKREIVHRERMLEHLQRIGRSQ*
Ga0157376_1227267323300014969Miscanthus RhizosphereMVIRFPLRPEPKEIRLESHPSGLNRTDSRRLSAREIVHRERMLQHLERLARAAQ*
Ga0173478_1072574623300015201SoilMVIRFPLRLKPREVRLESHPSGLNRTDARRLSRREVVHRERMLEHLQRIEL
Ga0132258_1061985443300015371Arabidopsis RhizosphereMVIRFPLRRQSRPLLQQLLDGDRLETHASGLNRTDGRRLSARELLHRERMLRHL
Ga0132258_1132999233300015371Arabidopsis RhizosphereMVIRFPLRQEPKEIRLESHPSGLNRTDSRRLSAREVVHRERMLQHLERLERAAQ*
Ga0132258_1254391323300015371Arabidopsis RhizosphereMVIRFQRRAKKEIRLESHPSGLNRTGAGRLSRREIEHRERMLRHLARTLKAG*
Ga0132258_1320431923300015371Arabidopsis RhizosphereMVIRFPLRRQFRPLLQQLLDGDRLETHASGLNRTDSRRLSARELLHRERMLRHLERLARAAQ*
Ga0132258_1378969223300015371Arabidopsis RhizosphereMVIRFPLRRGSTRESGEERLETHPSGLNRTDSRRLSAREVVHRERMLRHLEKIERASAQ*
Ga0132257_10198013623300015373Arabidopsis RhizosphereMVIRFPLRRQFRPLLQQLLDGDRLETHASGLNRTDSRRLSAREL
Ga0132255_10058752143300015374Arabidopsis RhizosphereMVIRFPLRRQSRPLLQQLLDGDRLETHASGLNRTDGRRLSARELLHRERMLRHLERLARAAQ*
Ga0132255_10162346923300015374Arabidopsis RhizosphereMVIRFPLRRGSTRESNEDRLETHPSGLNRTDSRRLSAREVVHRERMLRHLEKIERASAQ*
Ga0190266_1059164123300017965SoilMVIRFPLRLKPREVRLESHPSGLNRTDARRLTRREVVHRERMLEHLHRLELRKTS
Ga0066655_1112660923300018431Grasslands SoilSPPFLIVPAMVIRFPLRAKPKEQRLETHPSGLNRTDDRRLSAREVLHRERMLRHLERLERAQ
Ga0190274_1069896123300018476SoilMVIRFPLRLKPREVRLESHPSGLNRTDARRLSRREVVHRERMLEHLQRIELRKTS
Ga0190271_1028531523300018481SoilMVIRFPFRQKPREVRLESHPSGLNRTGARRLSKEEIVHRERMLEYL
Ga0173481_1039615923300019356SoilMVIRFQRRANKEIRLETHPSGLNRTGPRRLSRREIEHRERMLHHLARTNRRTLEPLEP
Ga0173479_1069622123300019362SoilMVIRFQRRANKEIRLETHPSGLNRTGPRRLSRREIEHRERMLHHLARTNRRTL
Ga0222622_1037156123300022756Groundwater SedimentMIIRFPSRKKEDRLESHPSGLNRTDARRLSRREVEHRLRMLAHLRRTRPDPAQ
Ga0207682_1036003113300025893Miscanthus RhizosphereFRRRAKKETRLESHPSGLNRTGAGRLSRREIEHRERMLRHLARTLKAG
Ga0207688_1014684423300025901Corn, Switchgrass And Miscanthus RhizosphereMVIRFRRRAKKEIRLESHPSGLNRTGAGRLSRREIEHRERMLRHLARTLKAG
Ga0207680_1107231713300025903Switchgrass RhizosphereMVIRFRRRAKKETRLESHPSGLNRTGAGRLSRREIEHRERMLRHLARTLKAG
Ga0207684_1118780223300025910Corn, Switchgrass And Miscanthus RhizosphereMVIRFPTRKRKTEDRLETHPSGLNRTDGRRLSNREIEHRERMLQHLQRTYEPRNLEPLEP
Ga0207654_1026443533300025911Corn RhizosphereRFRRRAKKEIRLESHPSGLNRTGAGRLSRREIEHRERMLRHLARTLKAG
Ga0207701_1149957923300025930Corn, Switchgrass And Miscanthus RhizosphereMVIRFPFRQKAREIRLESHPSGLNRTDDRRLSKREIVHRERMLEHLRRLDLRRTS
Ga0207690_1072828423300025932Corn RhizosphereMVIRFPFRARPLDKELRLESHPSGLNRTDGRRLSAREVVHRERMLRHLERISNPSRVQYP
Ga0207690_1164257913300025932Corn RhizosphereLSRRADSIFSMVIRFRRRAKKEIRLESHPSGLNRTGAGRLSRREIEHRERMLRHLARTLKAG
Ga0207669_1027013523300025937Miscanthus RhizosphereMVIRFPRLRLATFSSVRKRQDEVRLESHPSGLNPTDARRLSRREVEHRERMLRHLELVHRDR
Ga0207704_1156489923300025938Miscanthus RhizosphereDDTIFSMVIRFRRRAKKEIRLESHPSGLNRTGAGRLSRREIEHRERMLRHLARTLKAG
Ga0207679_1036886823300025945Corn RhizosphereMVIRFLSRKKEDRLESHPSGLNRTDARRLSRREIEHRERMLEHLRRTQPDPRQ
Ga0207675_10035967033300026118Switchgrass RhizosphereMVIRFRRPAKKEIRLESHPSGLNRTGAGRLSRREIEHRERMLRHLARTLKAG
Ga0207698_1083947413300026142Corn RhizosphereVIRFRRRAKKEIRLESHPSGLNRTGAGRLSRREIEHRERMLRHLAR
Ga0207698_1196380323300026142Corn RhizosphereMVIRFPLRWKLTSNANAKEDRLESHPSGLNRTDSRRLSAREVVHRERMLRHLEQLSRGAQ
Ga0209647_102144113300026319Grasslands SoilMVIRFPRLRIAKPSSDDRLEAHSSGLNRTDARRLSRREVEHRERMLRHLQLIERRC
Ga0209647_109467113300026319Grasslands SoilMVIRFPRLRIAKPSSDDRLETHPSGLNRTDARRLSRREVEHRERMLRHLQLIERHR
Ga0209382_1054609223300027909Populus RhizosphereMVIRFTLFSNRQNEDRLETHPSGLNRTDDRRLGRREIEHRERMLEHLRRTLPDSNSPFPA
Ga0307280_1032223523300028768SoilMVIRFQLLPRRTDSSDRLESHPSGLNRTDARLSRREIQHRERMLRHLQRTEKQGTLQS
Ga0307282_1002215233300028784SoilMVIRFQLLPRRTDSSDRLESHPSGLNRTDARRLSRREIQHRERMLRHLQRTEKQGTLQS
Ga0307283_1000894723300028790SoilMVIRFPLGQKPREIRLESHASSLNRTGARRLSKQEIVHRERMLEYLRRAELRRTS
Ga0307503_1009493523300028802SoilMVIRFPSRKKEDRLETHPSGLNRTDARRLNRREIEHRERMLEHLRRTQPDPAQ
Ga0307312_1001211033300028828SoilMVIRFQLLPRRTDSSDRLESHPSGLNRTDVRRLSRREIQHRERMLRHLQRTEKQGTLQS
Ga0310904_1032667113300031854SoilMVIRFPSRKKEDRLESHPSGLNRTGPRRLSPREIEHRERMLRHLQLVERPRSTS
Ga0310884_1051015023300031944SoilMVIRFPLRRQSRPLLQQLLDGDRLETHASGLNRTDSRRLSARELLHRERMLRHLERLARAAQ
Ga0310884_1051898623300031944SoilMVIRFPRLRLLRPSQQDDRLETHSSGLNRTDARRLSRRELEHRERMLRHLELIDRRG
Ga0310906_1119246323300032013SoilRLLRPSQQDDRLETHSSGLNRTDARRLSRRELEHRERMLRHLELIDRRG
Ga0315912_1060775723300032157SoilMVIRFPLRLKPREVRLESHPSGLNRTDARRLSSREVVHRERMLEHLQRIELRKTS
Ga0315281_1079066623300032163SedimentMVIRFPLRQKAREVRLESHPSGLNRTPLSDDRRLTRREIVHRERMLEHLQRIDTRTP
Ga0310810_1141972923300033412SoilMVIRFPLRLKPKELRLETHPSGLNRTDSRRLSAREVLHRERMLRHLEQLARAASR

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.