Metagenome / Metatranscriptome Family F070975

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F070975
Family Type	Metagenome / Metatranscriptome
Number of Sequences	122
Average Sequence Length	96 residues
Representative Sequence	MTAFFVPGTPLGEQADRAYEDLRDRAELDTGRPPRSRRIYKLSCRRGGADCETCVGEHDLGGGTVHAIFDVGDRYAIYLPGGHEIVTKRQTYAVVEFDA
Number of Associated Samples	103
Number of Associated Scaffolds	122

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	69.67 %
% of genes near scaffold ends (potentially truncated)	33.61 %
% of genes from short scaffolds (< 2000 bps)	92.62 %
Associated GOLD sequencing projects	97
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.79

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (70.492 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (37.705 % of family members)
Environment Ontology (ENVO)	Unclassified (37.705 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 16.54% β-sheet: 29.92% Coil/Unstructured: 53.54%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.79
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.79
Powered by PDBe Molstar

SCOP family	SCOP domain	Representative PDB	TM-score
b.69.4.1: WD40-repeat	d7mt1a_	7mt1	0.51724
b.67.3.1: Apyrase	d1s1da_	1s1d	0.51368
b.70.2.1: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase	d1qksa2	1qks	0.51271
b.67.2.3: Glycosyl hydrolases family 32 N-terminal domain	d1y4wa2	1y4w	0.50522

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 122 Family Scaffolds
PF13377	Peripla_BP_3	29.51
PF00313	CSD	12.30
PF07730	HisKA_3	3.28
PF08241	Methyltransf_11	2.46
PF07334	IFP_35_N	0.82
PF00027	cNMP_binding	0.82
PF01047	MarR	0.82
PF00816	Histone_HNS	0.82
PF04102	SlyX	0.82
PF12681	Glyoxalase_2	0.82
PF00903	Glyoxalase	0.82
PF00528	BPD_transp_1	0.82
PF02518	HATPase_c	0.82

COG ID	Name	Functional Category	% Frequency in 122 Family Scaffolds
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	3.28
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	3.28
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	3.28
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	3.28
COG2900	Uncharacterized coiled-coil protein SlyX (sensitive to lysis X)	Function unknown [S]	0.82
COG2916	DNA-binding protein H-NS	Transcription [K]	0.82

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	70.49 %
Unclassified	root	N/A	29.51 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	70.49 %
Unclassified	root	N/A	29.51 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	70.49 %
Unclassified	root	N/A	29.51 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	40.16 %
Unclassified	root	N/A	29.51 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.28 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	40.16 %
Unclassified	root	N/A	29.51 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	3.28 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.51 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	21.31 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	12.30 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3.28 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.51 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	15.57 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	12.30 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	3.28 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1.64 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.82 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.51 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	15.57 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	5.74 %
Sorangiineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae	3.28 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	1.64 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.82 %
Kribbellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.51 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	15.57 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	5.74 %
Polyangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae	3.28 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	1.64 %
Actinomycetospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora	0.82 %
Kribbella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.51 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	15.57 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	5.74 %
Sorangium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → Sorangium	3.28 %
Nocardia mexicana	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia mexicana	1.64 %
Kribbella shirazensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → Kribbella shirazensis	0.82 %
Actinomycetospora succinea	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora succinea	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.51 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	15.57 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	5.74 %
Sorangium cellulosum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → Sorangium → Sorangium cellulosum	3.28 %
Nocardia mexicana	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia mexicana	1.64 %
Kribbella shirazensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → Kribbella shirazensis	0.82 %
Actinomycetospora succinea	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora succinea	0.82 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000891\|JGI10214J12806_11176432	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	750	Open in IMG/M
3300000956\|JGI10216J12902_102942408	All Organisms → cellular organisms → Bacteria	1099	Open in IMG/M
3300000956\|JGI10216J12902_104177062	All Organisms → cellular organisms → Bacteria	945	Open in IMG/M
3300000956\|JGI10216J12902_109097813	Not Available	836	Open in IMG/M
3300000956\|JGI10216J12902_115740532	Not Available	700	Open in IMG/M
3300000956\|JGI10216J12902_125611378	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	605	Open in IMG/M
3300001305\|C688J14111_10002057	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5395	Open in IMG/M
3300002568\|C688J35102_118267677	Not Available	544	Open in IMG/M
3300002568\|C688J35102_118908543	Not Available	612	Open in IMG/M
3300004081\|Ga0063454_100876587	Not Available	705	Open in IMG/M
3300004114\|Ga0062593_100044137	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2708	Open in IMG/M
3300004156\|Ga0062589_101238092	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300005328\|Ga0070676_10885064	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300005337\|Ga0070682_101201141	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300005347\|Ga0070668_102204904	Not Available	509	Open in IMG/M
3300005366\|Ga0070659_100714504	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	867	Open in IMG/M
3300005434\|Ga0070709_10627064	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	830	Open in IMG/M
3300005455\|Ga0070663_100563117	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	954	Open in IMG/M
3300005457\|Ga0070662_101915094	Not Available	512	Open in IMG/M
3300005562\|Ga0058697_10324278	Not Available	742	Open in IMG/M
3300005562\|Ga0058697_10647391	Not Available	557	Open in IMG/M
3300005578\|Ga0068854_100623407	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	923	Open in IMG/M
3300005614\|Ga0068856_102139251	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300005718\|Ga0068866_10962775	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	604	Open in IMG/M
3300005719\|Ga0068861_101178176	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → Sorangium → Sorangium cellulosum	740	Open in IMG/M
3300005887\|Ga0075292_1034954	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	699	Open in IMG/M
3300005937\|Ga0081455_10411972	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	935	Open in IMG/M
3300006046\|Ga0066652_100136086	Not Available	2040	Open in IMG/M
3300006844\|Ga0075428_100209747	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2105	Open in IMG/M
3300009012\|Ga0066710_102567260	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	734	Open in IMG/M
3300009162\|Ga0075423_12155990	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	605	Open in IMG/M
3300009551\|Ga0105238_12862029	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia mexicana	519	Open in IMG/M
3300009553\|Ga0105249_11135475	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	852	Open in IMG/M
3300009840\|Ga0126313_10251673	All Organisms → cellular organisms → Bacteria	1371	Open in IMG/M
3300010040\|Ga0126308_10442714	All Organisms → cellular organisms → Bacteria	872	Open in IMG/M
3300010045\|Ga0126311_10870284	Not Available	730	Open in IMG/M
3300010166\|Ga0126306_10161837	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1670	Open in IMG/M
3300010375\|Ga0105239_10407156	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → Sorangium → Sorangium cellulosum	1540	Open in IMG/M
3300010399\|Ga0134127_13581533	Not Available	509	Open in IMG/M
3300010400\|Ga0134122_12985459	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	527	Open in IMG/M
3300010999\|Ga0138505_100075075	Not Available	502	Open in IMG/M
3300012200\|Ga0137382_10180440	All Organisms → cellular organisms → Bacteria	1444	Open in IMG/M
3300012204\|Ga0137374_10475340	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → Sorangium → Sorangium cellulosum	976	Open in IMG/M
3300012350\|Ga0137372_10381090	All Organisms → cellular organisms → Bacteria	1072	Open in IMG/M
3300012355\|Ga0137369_10282989	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1238	Open in IMG/M
3300012355\|Ga0137369_10929041	Not Available	582	Open in IMG/M
3300012356\|Ga0137371_10667380	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	796	Open in IMG/M
3300012360\|Ga0137375_10616566	All Organisms → cellular organisms → Bacteria	901	Open in IMG/M
3300012899\|Ga0157299_10193261	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300012911\|Ga0157301_10339021	Not Available	562	Open in IMG/M
3300012955\|Ga0164298_10625395	Not Available	743	Open in IMG/M
3300012984\|Ga0164309_10167787	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1479	Open in IMG/M
3300012989\|Ga0164305_10056616	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2326	Open in IMG/M
3300013307\|Ga0157372_11090549	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	924	Open in IMG/M
3300014487\|Ga0182000_10052326	All Organisms → cellular organisms → Bacteria	1228	Open in IMG/M
3300014497\|Ga0182008_10242026	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia mexicana	928	Open in IMG/M
3300015201\|Ga0173478_10674080	Not Available	549	Open in IMG/M
3300015371\|Ga0132258_10732008	All Organisms → cellular organisms → Bacteria	2491	Open in IMG/M
3300015372\|Ga0132256_101632482	All Organisms → cellular organisms → Bacteria	754	Open in IMG/M
3300015373\|Ga0132257_101811705	All Organisms → cellular organisms → Bacteria	784	Open in IMG/M
3300015374\|Ga0132255_100954765	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → Sorangium → Sorangium cellulosum	1284	Open in IMG/M
3300018027\|Ga0184605_10077461	All Organisms → cellular organisms → Bacteria	1446	Open in IMG/M
3300018028\|Ga0184608_10120700	All Organisms → cellular organisms → Bacteria	1111	Open in IMG/M
3300018054\|Ga0184621_10223803	Not Available	673	Open in IMG/M
3300018061\|Ga0184619_10298662	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	738	Open in IMG/M
3300018071\|Ga0184618_10280263	Not Available	708	Open in IMG/M
3300018081\|Ga0184625_10388626	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	721	Open in IMG/M
3300018429\|Ga0190272_12987324	Not Available	524	Open in IMG/M
3300018466\|Ga0190268_10119891	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1272	Open in IMG/M
3300018476\|Ga0190274_12339900	Not Available	631	Open in IMG/M
3300019279\|Ga0184642_1257349	Not Available	565	Open in IMG/M
3300021080\|Ga0210382_10258192	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M
3300022534\|Ga0224452_1112246	All Organisms → cellular organisms → Bacteria	836	Open in IMG/M
3300024055\|Ga0247794_10355438	Not Available	502	Open in IMG/M
3300025932\|Ga0207690_11139324	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	651	Open in IMG/M
3300025961\|Ga0207712_10712022	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinomycetospora → Actinomycetospora succinea	877	Open in IMG/M
3300026078\|Ga0207702_10509650	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1173	Open in IMG/M
3300027750\|Ga0209461_10176259	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300027907\|Ga0207428_11025636	Not Available	579	Open in IMG/M
3300028589\|Ga0247818_10295014	All Organisms → cellular organisms → Bacteria	1078	Open in IMG/M
3300028705\|Ga0307276_10178225	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	552	Open in IMG/M
3300028710\|Ga0307322_10050528	All Organisms → cellular organisms → Bacteria	1014	Open in IMG/M
3300028711\|Ga0307293_10174590	Not Available	684	Open in IMG/M
3300028715\|Ga0307313_10139949	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	745	Open in IMG/M
3300028717\|Ga0307298_10091187	All Organisms → cellular organisms → Bacteria	861	Open in IMG/M
3300028719\|Ga0307301_10008134	All Organisms → cellular organisms → Bacteria	2949	Open in IMG/M
3300028719\|Ga0307301_10078060	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1037	Open in IMG/M
3300028719\|Ga0307301_10156920	All Organisms → cellular organisms → Bacteria	733	Open in IMG/M
3300028720\|Ga0307317_10018759	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2104	Open in IMG/M
3300028720\|Ga0307317_10253632	Not Available	594	Open in IMG/M
3300028722\|Ga0307319_10044834	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1384	Open in IMG/M
3300028722\|Ga0307319_10257205	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	575	Open in IMG/M
3300028744\|Ga0307318_10066462	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1203	Open in IMG/M
3300028768\|Ga0307280_10166845	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	767	Open in IMG/M
3300028778\|Ga0307288_10393322	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300028784\|Ga0307282_10530158	Not Available	572	Open in IMG/M
3300028790\|Ga0307283_10111338	Not Available	725	Open in IMG/M
3300028793\|Ga0307299_10090971	All Organisms → cellular organisms → Bacteria	1138	Open in IMG/M
3300028796\|Ga0307287_10136613	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	931	Open in IMG/M
3300028799\|Ga0307284_10151676	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	894	Open in IMG/M
3300028799\|Ga0307284_10314372	Not Available	631	Open in IMG/M
3300028807\|Ga0307305_10123257	Not Available	1198	Open in IMG/M
3300028807\|Ga0307305_10374774	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → Kribbella shirazensis	644	Open in IMG/M
3300028819\|Ga0307296_10127574	All Organisms → cellular organisms → Bacteria	1370	Open in IMG/M
3300028819\|Ga0307296_10447857	Not Available	706	Open in IMG/M
3300028824\|Ga0307310_10613578	Not Available	554	Open in IMG/M
3300028828\|Ga0307312_10180147	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1351	Open in IMG/M
3300028828\|Ga0307312_10529641	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	778	Open in IMG/M
3300028828\|Ga0307312_11181811	Not Available	506	Open in IMG/M
3300028878\|Ga0307278_10002754	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	8616	Open in IMG/M
3300028881\|Ga0307277_10081915	All Organisms → cellular organisms → Bacteria	1352	Open in IMG/M
3300028881\|Ga0307277_10341262	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	667	Open in IMG/M
3300028881\|Ga0307277_10521551	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	533	Open in IMG/M
3300030336\|Ga0247826_11340754	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	577	Open in IMG/M
3300031152\|Ga0307501_10061124	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	869	Open in IMG/M
3300031199\|Ga0307495_10245645	Not Available	513	Open in IMG/M
3300031200\|Ga0307496_10144320	Not Available	503	Open in IMG/M
3300031421\|Ga0308194_10042257	All Organisms → cellular organisms → Bacteria	1131	Open in IMG/M
3300031938\|Ga0308175_100897899	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	974	Open in IMG/M
3300031938\|Ga0308175_101783952	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300031996\|Ga0308176_10472499	All Organisms → cellular organisms → Bacteria	1267	Open in IMG/M
3300032159\|Ga0268251_10479687	Not Available	553	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	76.23%
Host-Associated	Host-Associated	23.77%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	68.85%
Plants	Host-Associated → Plants	23.77%
Aquatic	Environmental → Aquatic	7.38%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	68.03%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.11%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.38%
Sediment	Environmental → Aquatic → Sediment	5.74%
Phylloplane	Host-Associated → Plants → Phylloplane	2.46%
Freshwater	Environmental → Aquatic → Freshwater	1.64%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.82%
Phyllosphere	Host-Associated → Plants → Phyllosphere	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	62.30%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.38%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.74%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.74%
Loam	Environmental → Terrestrial → Soil → Loam	4.92%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.46%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	2.46%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.64%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.82%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.82%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	49.18%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.38%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.56%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.92%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.10%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	3.28%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.46%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.46%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	2.46%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.64%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.64%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.82%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.82%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	37.70%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.74%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.10%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	3.28%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	3.28%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.28%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.46%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.46%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.46%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	2.46%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.64%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.64%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.64%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.64%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.82%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.82%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.82%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.82%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.82%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.82%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.82%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.82%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	0.82%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001305	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005887	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_403	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010999	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t3i015	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019279	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300024055	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027750	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028705	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_115	Environmental	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028790	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_122	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031152	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S	Environmental	Open in IMG/M
3300031199	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_S	Environmental	Open in IMG/M
3300031200	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 9_S	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10214J12806_111764322	3300000891	Soil	MTAFFVPGTPIGEQSDRAYADLRRHAELDTGCPPRSKRIYKLSCRRGGADCETCVGDHELFGGTVHAIFDVGDRYVVYVPGGHEIVTKRQTYSIVEFD*
JGI10216J12902_1029424083	3300000956	Soil	MTPFFIPDTPAGEQSDRAYEDLRHHAEVAAGRPPRSRRIYKLSCRRGGADRETCVGEEDVAGGTVYAIFDIGDRYVVYIPGGHEIVTKRQTYAVVEFD*
JGI10216J12902_1041770621	3300000956	Soil	MTRFFVPNTPVGEQSDRAYEDMRRQAEVDGGRPPRSRRIYKLSCRRGGADRETCVGAEDLAGGTVYAIFDMGDRYAVYVPGGCEIVTKRQTYAVVDFD*
JGI10216J12902_1090978133	3300000956	Soil	MTAFFVPGAPQGQADQAYEDLRDRAELDVGRAPRSVRIYKLSCRLGGTDCETCVGEHDISGETVHAIFDFGDRYAVCRPGGHEMVTKRQTYAVVAFDA*
JGI10216J12902_1157405323	3300000956	Soil	MTAFFIPHTPHGEQSERAYEDLRHHAEVDAGRPPRSSRIYKLSCRRGGADRETCVGEADLAGGTIYAIFDIGDRYAVYVPGGHEIVTKRQTYAVVEFD*
JGI10216J12902_1256113782	3300000956	Soil	MTAFFVPGTPQGDQADRAYDDLRDRAELEAGRAPRSVRIYKLSCRRGGADCETCVGEDDLGGETVHAIFDFGDHYAICLPGGHEIVTKRQTYAIVAFDA*
C688J14111_100020575	3300001305	Soil	MTAFFVPGAPQGQADQAYEDLRDRAELDVGRAPRAVRIYKLSCRRGGADCETCVGEHDITGETVHAIFDFGDRYAVCRPDGHEMVTKRQTYAVVAFDG*
C688J35102_1182676771	3300002568	Soil	DAAPAASAALMTPFFIPDTPAGEQSDRAYEDLRHHAEVAAGRPPRSRRIYSLSCRRGGADQETRVGQEDIAGGTVYAIFDIGDRYVVYVPGGHEIVTKRQTYAVVEFD*
C688J35102_1189085431	3300002568	Soil	MTAFFVPGAPQEQADQAYEDLRDRAQLDVGRPPRAVRIYKLSCRRGGADCETCVGEHDITGETVHAIFDFGDHYAVCRPDGHEMVTKRQTYAVVAFDG*
Ga0063454_1008765871	3300004081	Soil	MTPFFIPDTPAGEQSDRAYEDLRHHAEVAAGRPPRSRRIYSLSCRRGGADQETRVGQEDIAGGTVYAIFDIGDRYVVYVPGGHEIVTKRQTYAVVEFD*
Ga0062593_1000441373	3300004114	Soil	MTAFFVPGAPGEQEDQAYEDLRERAVLDIGRVPRPVRIYKLSCRRGGADCETCVGEHDITGETVHAIFDFGDGYAVCLPGGHQMVTKRQTYAAVAFDA*
Ga0062589_1012380922	3300004156	Soil	MTAFFVPGAPREQADQAYEELRDRAELDVGRAPRSLRIYKLSCRRGGADCETCVGEHDITGETVHAIFDFGDHYAVCRPGGHEMVTKRQTYAVVAFDG*
Ga0070676_108850642	3300005328	Miscanthus Rhizosphere	MTAFFVPGAPGGQEDQAYEDLRDRAVLDMGRAPRPVRIYKLSCRRGGADCETCVGEHDITGETVHAIFDFGDGYAVCLPGGHQMVTKRQTY
Ga0070682_1012011412	3300005337	Corn Rhizosphere	MTAFFVPGAPGEQEDQAYEELRDRAVLDIGRAPRPVRIYKLSCRRGGADCETCVGEHDITGETVHAIFDFGDGYAVCLPGGHQMVTKRQTYAAVAFDA*
Ga0070668_1022049042	3300005347	Switchgrass Rhizosphere	MTAFFVPGAPGEQEDQAYEDLRDRAVLDMGRAPRPVRIYKLSCRRGGADCETCVGEHDITGETVHAIFDFGDGYAVCLPGGHQMVTK
Ga0070659_1007145041	3300005366	Corn Rhizosphere	MTGFFVPDTPAGEQSDRAYEDMRRRAELQAGMAPRSLRIYKLSCRRGGADRETCVGEQDVAGGTIYAIFDVGDRYVVYLRGRHEIVTKRQTYAVTEFD*
Ga0070709_106270642	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MTAFFVPGAPGEQEDLAYEELRDRAVLDIGRAPRPVRIYKLSCRRGGADCETCVGEHDITGETVHAIFDFGDGYAVCLPGGHQMVTKRQTYAAVAFDA*
Ga0070663_1005631172	3300005455	Corn Rhizosphere	MTAFFVPGAPGEQEDQAYEELRERAVLDIGRAPRPVRIYKLSCRRGGADCETCVGEHDITGETVHAIFDFGDGYAVCLPGGHQMVTKRQTYAAVAFDA*
Ga0070662_1019150941	3300005457	Corn Rhizosphere	MTAFFVPGAPGEQEDQAYEHLRDRAVLDMGRAPRPVRIYKLSCRRGGADCETCVGEHDITGETVHAIFDFGDGYAVCLPGGHQMVTKRQTYAAVAFDA*
Ga0058697_103242781	3300005562	Agave	MTSFFVPDTPAGEQSDRAYEDLRHHAEVAAGRPPRSRRIYKLSCRRGGADRETCVGEQDVAGGTVYAIFDIGDRYVVYVPGGHEIVTKRQTYAVVEFE*
Ga0058697_106473912	3300005562	Agave	MTGFFVPETPAGEQSDRAYEDMRRRAAHDAGRAPHSRRIYKLSCRRGGADRETCVGEQDVAGGTVYAIFDIGDRYAVYVPGGHEIVTKRQTY
Ga0068854_1006234071	3300005578	Corn Rhizosphere	MTGFFVPDTPAGEQSDRAYEDMRRRAELQAGMAPRSLRIYKLSCRRGGADRETCVGEQDVAGGTIYAIFDVGDRYVVYLRGRHEIVTKRQTYAVT
Ga0068856_1021392512	3300005614	Corn Rhizosphere	QADRAYEDLRDRAELDAGRAPSSRRIYSLSCRRGGTDCETAVGEQDLGGALVHAIFDVGDRYAIYLAGGHEIVTKRQTYAVVEFDA*
Ga0068866_109627752	3300005718	Miscanthus Rhizosphere	MTAFFVPGAPGEQEDQAYEDLRDRAVLDMGRAPRPVRIYKLSCRRGGADCETCVGEHDITGETVHAIFDFGDGYAVCLPGGHQMVTKRQTYAAVAFDA*
Ga0068861_1011781761	3300005719	Switchgrass Rhizosphere	MTAFFVPGAPGEQEDQAYENLRDRAVLDMGRAPRPVRIYKLSCRRGGADCETCVGEHDITGETVHAIFDFGDGYAVCLPGGHQMVTKRQ
Ga0075292_10349541	3300005887	Rice Paddy Soil	PQEHADQAYEDLRDRAELDIGRAPRSLRIYKLSCRRGGADCETCVGEHDITGETVHAIFDFGDGYAVCRPGGHEMVTKRQTYAVVAFDG*
Ga0081455_104119722	3300005937	Tabebuia Heterophylla Rhizosphere	MTRFFVPNTPVGDQSDRAYEDMRRQAELDGGRAPRSRRIYKLSCRRGGADRETCVGEEDLAGGTVYAIFDMGDRYAVYVPGGCEIVTKRQTYAVVDFD*
Ga0066652_1001360861	3300006046	Soil	MTAFFVPGTSQGEPADRAYEDLRDRAELEVGRAPRSLRIYKLSCRRGGADCETCVGEDDLGGETVHAIFDFGDRYAICVPGGHEIVTKRQTYAIVAFDA*
Ga0075428_1002097474	3300006844	Populus Rhizosphere	MTRFFVPNTPIGEQSDRAYEDMRRQAEADGGRAPRSRRIYMLSCRRGGVDRETCVGKEDLAGGTVYAIFDMGDRYAVYVPGGCEIVTKRQTYAVVDFD*
Ga0066710_1025672602	3300009012	Grasslands Soil	EDLRDRAELEVGRAPRALRIYKLSCRRGGADCETCVGEDDLGGETVHAIFDFGDRYAICVPGGHEIVTKRQTYAIVAFDA
Ga0075423_121559902	3300009162	Populus Rhizosphere	MTAFFVPGVPGEQEDQAYEELRERAVLDVGRAPRPVRIYKLSCRRGGADCETCVGEHDITGETVHAIFDFGDGYAVCLPGGHQMVTKRQTYAAVAFDA*
Ga0105238_128620291	3300009551	Corn Rhizosphere	MTAFFVPGAPGEQEDQAYEDLRDRAVLDMGRAPRPVRIYKLSCRRGGADCETCVGEHDITGETVHAIFDFGDGYAVCLPGGHQMVTKRQTYA
Ga0105249_111354752	3300009553	Switchgrass Rhizosphere	MTAFFVPGAPGEQEDQAYENLRDRAVLDMGRAPRPVRIYKLSCRRGGADCETCVGEHDITGETVHAIFDFGDGYAVCLPGGHQMVTKRQTYAAVAFDA*
Ga0126313_102516733	3300009840	Serpentine Soil	MTRFFVPGTPAGAPSDRAYEDMRRHAELASGRAPRLRRIYKLSCRRGGADQETCVGEEDLTGGTVYAIFDIGDRYAVYVAGGHEIVTKRQTYAVVEFD*
Ga0126308_104427142	3300010040	Serpentine Soil	MTAFFVPGAPQGQADQAYEDLRDRAELDVGRAPRAVRIYKLSCRRGGADCETCVGEHDITGETVHAIFDFGDRYAVCRPNGHEMVTKRQTYAVVAFDG*
Ga0126311_108702842	3300010045	Serpentine Soil	MTAFFVPGAPREQADQAYEDLRDRAELDVGRAPRAVRIYKLSCRRGGADCETCVGEHDVTGETVHAIFDFGDRYAVCRPDGHEMVTKRQTYAVVAFDG*
Ga0126306_101618374	3300010166	Serpentine Soil	MTAFFVPDTPVGEQSDRAYADLRRHAEFDGGRPPRERRIYKLSCRRGGSDSETCVGEPDLSGGTVHAIFDMGDRYVVYMPGGHQIITKRQTYAVTDFD*
Ga0105239_104071562	3300010375	Corn Rhizosphere	MTAFFVPGAPGEQEDQAYEDLRERAVLDIGRVPRPVRIYKLSCRRGGADCETCVGEHDITGETVHAIFDFGDGYAVCLPGGHQMVTKRQ
Ga0134127_135815331	3300010399	Terrestrial Soil	MTAFFVPGAPGEQEVQAYEDLRERAVLDIGRAPRPVRIYKLSCRRGGADCETCVGEHDITGETVHAIFDFGDGYAVCLPGGHEIVTKRQTYAAVAFDA*
Ga0134122_129854591	3300010400	Terrestrial Soil	MTAFFVPGAPGEQEDQAYEELRERAVLDIGRAPRPVQIYKLSCRRGGADCETCVGEHDITGETVHAIFDFGDGYAVCLPGGHQMVTKRQTYAAVAFDA*
Ga0138505_1000750752	3300010999	Soil	MTTFFISDTPAGEQSDRAYEDLRHHAEVAAGRPPRSRRIYKLSCRRGGADRETCVGEEDVAGGTVYAIFDIGDRYVVYIPGGHEIVTKRQTYAVVEFD*
Ga0137382_101804402	3300012200	Vadose Zone Soil	MTAFFVPGTPGEQADRVYEDLRERAALDHDCPPRSRRIYMLSCRRGGADCETYVGADDLGGETVHAIFDVGDRYAIYAPGGHEVVTKRQTYAVVEFDA*
Ga0137374_104753401	3300012204	Vadose Zone Soil	MTAFFVPGEPLGEQAERAYEGLRDRAERDAGRAPRLQRIYKLSCRRGGADCEPCVGQQDGGGGTVHAIFDFGDSYAIYVPGGREIVTKRQTYAV
Ga0137372_103810902	3300012350	Vadose Zone Soil	VECYVTAFFVPEAATGEQADRAYEALRHHAELDAGRPPRARRIYKLSCRRDGADCETCVGEHEPSGAKVHAIFDIGDRYAVYVPGGHQIVTKRQTYAVVEFD*
Ga0137369_102829892	3300012355	Vadose Zone Soil	MTAFFVPGEPLGEQAERAYEGLRDRAERDAGRAPRLQRIYKLSCRRGGADCEPCVGQQDGGGGTVHAIFDFGDSYAIYVPGGREIVTKRQTYAVVEFDA*
Ga0137369_109290411	3300012355	Vadose Zone Soil	MTAIFVPGALVGEQSDRTYEDLRDRAELDAGRAPRSRRIYKLSCRRGGADCETCVGEHDLTGETVHAIFDVGDRYAIYVTGGHEIVTKRQTYAV
Ga0137371_106673802	3300012356	Vadose Zone Soil	MTAFFIPDTPVGAQSDRAYEDLRHHAELDAGRAPRSRRIYKLSCRHGGADRETCVGDHDLFGGTVHAIFDIGDRYAIYLPGGHEIVTKRQTYSVVEFD*
Ga0137375_106165662	3300012360	Vadose Zone Soil	MTPFFVPHTPCGEQSERAYEDLRHHAEVDAGRPPRTSRIYKLSCRRGGADRETCVGDDLDGGTVYAIFDIGDRYAVYIPGGHEIVTKRQTYAVVEFD*
Ga0157299_101932611	3300012899	Soil	MTAFFVPGAPRGQADQAYEDLRDRAELDVGRAPRSVRIYKLSCRLGGADCETCVGEHDVTGETVHAIFDFGDRYAVCRPGGHDMVTKRQTYAV
Ga0157301_103390211	3300012911	Soil	MTAFFVPGAPGEQEDQAYEDLRERAVLDIGRVPRPVRIYKLSCRRGGADCETCVGEHDITGETVHAIFDFGNGYAVCLPGGHQMVTKRQTYAAVAFDA*
Ga0164298_106253951	3300012955	Soil	MTAFFVPGTPAEQEDQAYEDLRDRAVLDIGRAPRPVRIYKLSCRRGGADCETCVGEHDVTGETVHAIFDFGDGYAVCLPGGHEIVTKRQTYAVVEFDA*
Ga0164309_101677871	3300012984	Soil	MTAFFVPGAPQGEQADQAYEDLRDRAELDVGRPPRSLRIYKLSCRRGGADCETCVGEDDLGGETVHAIFDFGDRYAICVPDGHEMVTKRQTYAVFAFDA*
Ga0164305_100566162	3300012989	Soil	MTAFFVPGAPQGEQADQAYEDLRDRAELDVGRPPRSLRIYKLSCRRGGADCETCVGEDDLGGETVHAIFDFGDRYAVCLPGGHAIVTKRQTYAVFAFDA*
Ga0157372_110905492	3300013307	Corn Rhizosphere	MTAFFVPGTPTGEQADRAYEDLRDRAQLDAGRAPRSRRIYKLSCRRGGADCETCVGEHDITGETVHAIFDFGDGYAVCLPGGHQMVTKRQTYAAVAFDA*
Ga0182000_100523262	3300014487	Soil	MTSFFFPDTPAGEQSDRAYEDLRHHAEVAAGRPPRSRRIYKLSCRRGGADRETCVGEQDVAGGTVYAIFDIGDRYVVYVPGGHEIVTKRQTYAVVEFE*
Ga0182008_102420262	3300014497	Rhizosphere	MTAFFVPGAPREQEDEAYEDLRDRAVLDIGRAPRPVRIYKLSCRRGGVDCETCVGQDDITGETVRAIFDFGDGYAVCLPGGHEMVTKRQTYAVGVFDG*
Ga0173478_106740802	3300015201	Soil	RGQADQAYEDLRDRAELDVGRAPRSVRIYKLSCRLGGADCETCVGEHDVTGETVHAIFDFGDRYAVCRPGGHDMVTKRQTYAVVAFDG*
Ga0132258_107320083	3300015371	Arabidopsis Rhizosphere	MTAFFVPGASQGQADQAYEDLRDRAELDVGRAPRSVRIYKLSCRLRGTDCETCVGEHDVSGETVHAIFDFGDRYAVCRPGGHEMVTKRQTYAVVAFDG*
Ga0132256_1016324821	3300015372	Arabidopsis Rhizosphere	MTAFFVPGAPQGQADQAYEDLRDRAELDVGRAPRSVRIYKLSCRLRGTDCETCVGEHDVSGETVHAIFDFGDRYAVCRPGGHEMVTKRQTYAVVAFDG*
Ga0132257_1018117051	3300015373	Arabidopsis Rhizosphere	MTAFFVPGAPQGQADQAYEDLRDRAELDVGRAPRSVRIYKLSCRLGGADCETCVGEHDITGETVHAIFDFGDRYAVCRPGGHEMVTKRQTYAVVAFDG*
Ga0132255_1009547652	3300015374	Arabidopsis Rhizosphere	MTAFFVPGASQGQADQAYEDLRDRAELDVGRAPRSVRIYKLSCRLGGADCETCVGEHDISGETVHAIFDFGDRYAVCRPGGHEMVTKRQTYAVVAFDG*
Ga0184605_100774615	3300018027	Groundwater Sediment	SDRAYEDLRHHAEVAAGRPPRSRRIYKLSCRRGGADRETCVGEEDVAGGTVYAIFDIGDRYVVYIPGGHEIVTKRQTYAVVEFD
Ga0184608_101207003	3300018028	Groundwater Sediment	MTPFFIPDTPAGEQSDRAYEDLRHHAEVAAGRPPRSRRIYKLSCRRGGADRETCVGEEDVAGGTVYAIFDIGDRYVVYIPGGHEIVTKRQTYAVVEFD
Ga0184621_102238031	3300018054	Groundwater Sediment	MTEFFVPGAPLGEQADQAYEDLRDRAELDAGRAPRSRRIYKLSCRRGGADCETCVGDHDLTGETVHAIFDVGDRYAIYVTSGHEIVTKRQTYAVIEFD
Ga0184619_102986622	3300018061	Groundwater Sediment	MTEFFVPGAPLGEQADQAYEDLRDRAELDAGRAPRSRRIYMLSCRRGGADCETYVGEHDLGGGTVHAIFDFGDGYAIYVPGGHEVVTKRQTYAVVEFDA
Ga0184618_102802631	3300018071	Groundwater Sediment	MTAFFVPGTVLGAQADRAYEDLRDRAELDTGFAPRTRRIYKLSCRRGGADCETCVGEHDLGGGTVHAIFDVGDGYAIYVPGGHEIVTKRQTYAVVEFDT
Ga0184625_103886261	3300018081	Groundwater Sediment	MTAFFVPGTPLGEQADRAYEDLRDRAELDTGRPPRSRRIYKLSCRRGGADCETCVGEHDLGGGTVHAIFDVGDRYAIYLPGGHEIVTKRQTYAVVEFDA
Ga0190272_129873242	3300018429	Soil	PAPAPAMTAFFVPDTPVGEQSDRAYADLRRHAEFDAGRPPRERRIYKLSCRRGGSDSETCVGEPDLSGGTVHAIFDIGDRYAVYMPGGHQIITKRQTYAVTDFD
Ga0190268_101198911	3300018466	Soil	EVPQAGQATSAAAPVMSAFFVPDTPLGEQADRAYEDLRRQAEFDGGRAPRMRRIYKLSCRRGGEDSETCVGEPDVTGGTVHAIFDMGDRYAVYMPGGHEIITKRQTYDVVDFD
Ga0190274_123399001	3300018476	Soil	MTAFFVPDTPVGEQSDRAYADLRRHAEFDAGRPPRERRIYKLSCRRGGSDSETCVGEPDLSGGTVHAIFDMGDRYAVYMPGGHQIITKRQTYAVTDFD
Ga0184642_12573492	3300019279	Groundwater Sediment	MTTFFIPDTPAGEQSDRAYEDLRHHAEVAAGRPPRSRRIYKLSCRRGGADRETCVGEEDVAGGTVYAIFDIGDRYVVYIPGGHEIVTKRQTYAVIEFD
Ga0210382_102581923	3300021080	Groundwater Sediment	QSDRAYEDLRHHAEVAAGRPPRSRRIYKLSCRRGGADRETCVGEEDVAGGTVYAIFDIGDRYVVYIPGGHEIVTKRQTYAVVEFD
Ga0224452_11122461	3300022534	Groundwater Sediment	AGGAQEVPQARDAAPATAAALMTPFFIPDTPAGEQSDRAYEDLRHHAEVAAGRPPRSRRIYKLSCRRGGADRETCVGEEDVAGGTVYAIFDIGDRYVVYIPGGHEIVTKRQTYAVVEFD
Ga0247794_103554381	3300024055	Soil	MTAFFVPGAPREQADQAYEELRDRAELDVGRAPRSLRIYKLSCRRGGADCETCVGEHDITGETVHAIFDFGDGYAVCLPGGHQMVTKRQTYAAVAFDA
Ga0207690_111393241	3300025932	Corn Rhizosphere	MTGFFVPDTPAGEQSDRAYEDMRRRAELQAGMAPRSLRIYKLSCRRGGADRETCVGEQDVAGGTIYAIFDVGDRYVVYLRGRHEIVTKRQTY
Ga0207712_107120223	3300025961	Switchgrass Rhizosphere	MTGFFVPDTPAGEQSDRAYEDMRRRAELQAGMAPRSLRIYKLSCRRGGADRETCVGEQDVAGGTIYAIFDVGDRYVVYLRGRHEIVTKRQTYAVTEFD
Ga0207702_105096502	3300026078	Corn Rhizosphere	MTAFFVPGAPGEQEDQAYEELRERAVLDIGRAPRPVRIYKLSCRRGGADCETCVGEHDITGETVHAIFDFGDHYAVCRPDGHEMVTKRQTYAVVAFDG
Ga0209461_101762592	3300027750	Agave	PAGEQSDRAYEDLRHHAEVAAGRPPRSRRIYKLSCRRGGADRETCVGEQDVAGGTVYAIFDIGDRYVVYVPGGHEIVTKRQTYAVVEFE
Ga0207428_110256362	3300027907	Populus Rhizosphere	MTRFFVPNTPIGEQSDRAYEDMRRQAEADGGRAPRSRRIYMLSCRRGGVDRETCVGKEDLAGGTVYAIFDMGDRYAVYVPGGCEIVTKRQTYAVVDFD
Ga0247818_102950142	3300028589	Soil	MTAFFVPGAPGGQEDQAYEDLRDRAVLDMGRAPRPVRIYKLSCRRGGADCETCVGEHDITGETVHAIFDFGDGYAVCLPGGHQMVTKRQTYAAVAFDA
Ga0307276_101782251	3300028705	Soil	APPAAPVMRAFFVPDTPLGVQSDRAYEDLRRQAEFDAGRAPRSRRIYKLSCRRGGEDSETCVGERDLSGGTVHAIFDIGDRYAIYMPGGHEIITKRQTYDVVDFD
Ga0307322_100505282	3300028710	Soil	MTTFFIPDTPAGEQSDRAYEDLRHHAEVAAGRPPRSRRIYKLSCRRGGADRETCVGEEDVAGGTVYAIFDIGDRYVVYIPGGHEIVTKRQTYAVVEFD
Ga0307293_101745901	3300028711	Soil	MTAFFVPGAPLGEPSDRAYEDLRDRAELDAGRAPRSRRIYKLSCRRGGADCETCVGDHDLTGETVHAIFDVGDRYAIYVTSGHEIVTKRQTYAVIEFD
Ga0307313_101399493	3300028715	Soil	MTPFFIPDTPSGEQSDRAYEDLRHHAEVAAGRPPRSRRIYKLSCRRRGADRETCVGEEDVDGGTVYAIFDIGDRYVVYVPGGHEIVTKRQTYAVVEFD
Ga0307298_100911871	3300028717	Soil	MTTFFIPDTPAGEQSDRAYEDLRHHAEVAAGRPPRSRRIYKLSCRRGGADRETCVGEEDVAGGTVYAIFDIGDRYVVYIPGGHEIVTKRQ
Ga0307301_100081341	3300028719	Soil	YEHLRDRAELDVGRAPRSLRIYKLSCRRGGTDCETCVGEHDIGGETIHAIFDFGDRYAVCRPGGHEMVTKRQTYAVVAFDG
Ga0307301_100780601	3300028719	Soil	MTAFFVPGTPLGEQADRAYEDLRDRAEIDIGRAPRSRRIYKLSCRRGGADCETCVGEHDLGGGTVHAIFDVGDRYAIYVPGGHEIVTKRQTYAVVEFDA
Ga0307301_101569201	3300028719	Soil	RAQEVPQARDAAPATAAALMTTFFIPDTPAGEQSDRAYEDLRHHAEVAAGRPPRSRRIYKLSCRRGGADRETCVGEEDVAGGTVYAIFDIGDRYVVYIPGGHEIVTKRQTYAVVEFD
Ga0307317_100187592	3300028720	Soil	MTAFFVPGAQHAQADQAYEDLRDRAELDVGRAPRALRIYKLSCRRGGADCETCVGEHDLGGETVHAIFDFGDRYAVCRPDGHEMVTKRQTYAVVAFDV
Ga0307317_102536321	3300028720	Soil	MTAFFVPGAPRAQADQAYEDLRDRAELDVGRAPRAVRIYKLSCRRGGADCETCVGEHDITGETVHAIFDFGDHYAVWRPDGHEMVTKRQTYAAVAFDG
Ga0307319_100448341	3300028722	Soil	MTAFFIPGTPLGEQSDRAYEDLRDRAELDAGRAPRSRRIYSLSCRRGGADCETCVGEHDLSGETVHAIFDVGDRYAIYVTSGHEIVTKRQTYAVVEFD
Ga0307319_102572052	3300028722	Soil	MTAFFIPGTPLGEQADRAYEDLRDRAEIDIGRAPRSRRIYKLSCRRGGADCETCVGEHDLGGGTVHAIFDVGDRYAIYVPGGHEIVTKRQTYAVVEFDT
Ga0307318_100664624	3300028744	Soil	MTAFFIPGTPLGEQADRAYEDLRDRAEIDIGRAPRSRRIYKLSCRRGGADCETCVGEHDLGGGTVHAIFDVGDRYAIYVPGGHEIVTKRQTYAVVEFDA
Ga0307280_101668451	3300028768	Soil	QAYEDLRDRAELDAGRAPRSRRIYMLSCRRGGADCETTVGEHDGGGTVHAIFDFGDGYAIYGPGGHEIVTKRQTYAVVEFDA
Ga0307288_103933221	3300028778	Soil	MTAFFVPGAPRAQADQAYEDLRDRAELDVGRAPRAVRIYKLSCRRGGADCETCVGEHDITGETVHAIFDFGDHYAVWRPDG
Ga0307282_105301582	3300028784	Soil	MTAFFVPGAQLGEPADRAYEDLRDRAELDAGRAPRSRRIYSLSCRRGGADCETCVGEHDLTGETVHAIFDVGDRYAIYMNGSHEIVTKRQTYAVVEFDA
Ga0307283_101113382	3300028790	Soil	MTAFFVPGAPRAQADQAYEDLRDRAELDVGRAPRAVRIYKLSCRRGGADCETCVGEHDITGETVHAIFDFGDHYAVWRPDGHEMVTKRQTYAVVAFDG
Ga0307299_100909711	3300028793	Soil	MTTFFIPDTPAGEQSDRAYEDLRHHAEVAAGRPPRSRRIYKLSCRRGGADRETCVGEEDVAGGTVYAIFDIGDRYVVYIPGGHEIVTKR
Ga0307287_101366133	3300028796	Soil	MTAFFVPGTPQGDEADRAYDDLRDRAELEAGRAPRSVRIYKLSCRRGGADCETCVGEDDLGGETVHAIFDFGDHYAVCLPGGHEIVTKRQTYAIVAFDA
Ga0307284_101516761	3300028799	Soil	EDLRDRAELDVGRAPRSLRIYKLSCRRGGTDCETCVGEHDIGGETIHAIFDFGDRYAVCRPGGHEMVTKRQTYAVFAFDG
Ga0307284_103143722	3300028799	Soil	MTEFFVPGAPLGEQADQAYEDLRDRAELDAGRAPRSRRIYMLSCRRGGADCETYVGEHDLGGGTVHAIFDFGDGYAIYGPGGHEVVTKRQTYAVVEFDA
Ga0307305_101232573	3300028807	Soil	MTAFFVPGAQLGEPADRAYEDLRDRAELDAGRAPRMRRIYKLSCRRGGADCETAVGEHDLAGGTVHAIFDVGDRYAIYVTGGHEIVTKRQTYAVVEFDA
Ga0307305_103747741	3300028807	Soil	MTPFFIPDTPAGEQSDRAYEDLRHHAEVAAGRPPRSRRIYKLSCRRGGADRETCVGEEDVAGGTVYAIFDIGDRYVVYIP
Ga0307296_101275743	3300028819	Soil	MTTFFIPDTPAGEQSDRAYEDLRHHAEVAAGRPPRSRRIYKLSCRRGGADRETCVGEEDVAGGTVYAIFDIGDRYVVYIPGGHEIVTKRQTYAVVEF
Ga0307296_104478573	3300028819	Soil	MTRFFVPDTPAGEQSDRAYEDMRRHAELASGRAPRLRRIYKLSCRRGGADQETCVGEEDVSGGTVYAIFDVGDRYAVYVPGGHEIVTKRQTYAVVEFD
Ga0307310_106135781	3300028824	Soil	MTAFFVPGSALGEPADRAYEDLRDRAELDAGRAPRSRRIYSLSCRRGGADCETCVGEHDLTGETVHAIFDVGDRYAIYMNGGHEIVTKRQTYAVVEFDA
Ga0307312_101801471	3300028828	Soil	YEDLRDRAELDAGRAPRSRRIYKLSCRRGGADCETCVGDHDLTGETVHAIFDVGDRYAIYVTSGHEIVTKRQTYAVIEFD
Ga0307312_105296413	3300028828	Soil	MTAFFVPDTPVGEQCDRAYEDLRRHAEFDAGRAPRSRRIYKLSCRRGGADSETCVGEPDLTGGTVHAIFDIGDRYAVYMPGGHEIITKRQTYDVVDFD
Ga0307312_111818111	3300028828	Soil	RAQEVPQARDAAPATAAALMTPFFIPDTPAGEQSDRAYEDLRHHAEVAAGRPPRSRRIYKLSCRRGGADRETCVGEEDVAGGTVYAIFDIGDRYVVYIPGGHEIVTKRQTYAVVEFD
Ga0307278_100027546	3300028878	Soil	MTPFFIPDTPAGEQSDRAYEDLRHHAEVAAGRPPRSRRIYKLSCRRGGADRETCVGEEDVDGGTVYAIFDIGDRYVVYIPGGHEIVTKRQTYAVVEFD
Ga0307277_100819151	3300028881	Soil	MTAFFVPGAPQEQADQAYEELRDRAELDVGRAPRAVRIYKLSCRRGGADCETCVGEHDITGETVHAIFDFGDHYAVCRPGGHEMVTKRQ
Ga0307277_103412621	3300028881	Soil	EQADRAYEDLRDRAETDIGRAPRSRRIYKLSCRRGGADCETCVGEYDLAGGTVHAIFDVGDRYAIYVPGGHEIVTKRQTYAVVEFDA
Ga0307277_105215511	3300028881	Soil	MRAFFVPDTPLGVQSDRAYEDLRRQAEFDAGRAPRSRRIYKLSCRRGGEDSETCVGERDLSGGTVHAIFDIGDRYAIYMPGGHEII
Ga0247826_113407543	3300030336	Soil	MTGFFVPDTPAGEQSDRAYEDMRRRAELQAGMAPRSLRIYKLSCRRGGADRETCVGEQDVAGGTIYAIFDVGDRYVVYLRGRHE
Ga0307501_100611242	3300031152	Soil	MTAFFVPGTPQGAQADTAYEFLRDRARLEVGRAPRSVRIYKLSCRRGGADCETCVGEHDLGGETVHAIFDFGDRYAVCVPGGHEMVTKRQTYATVAFDG
Ga0307495_102456451	3300031199	Soil	MTAFFVPGAPQGQQADQAYEDLRDRAELDVGRAPRSLRIYKLSCRRGGADCETCVGEHDLGGETVHAIFDFGDRYAVCRPDGHEMVTKRQTYAVVAFDG
Ga0307496_101443201	3300031200	Soil	MTAFFVPGAPQGQQADQAYEDLRDRAELDVGRAPRSLRIYKLSCRRGGADCETCVGEHDITGETVHAIFDFGDHYAVCRPDGHEMVTKRQTYAVVAFDG
Ga0308194_100422573	3300031421	Soil	MTTFFIPDTPAGEQSDRAYEDLRHHAEVAAGRPPRSRRIYKLSCRRGGADRETCVGEEDVAGGTVYAIFDVGDRYAVYVPGGHEIVTKRQTYAVVEFD
Ga0308175_1008978991	3300031938	Soil	MTAFFVPGAPREQADQAYEDLRDRAELDVGRAPRAVRIYKLSCRRGGADCETCVGEHDITGETVHAIFDFGDHYAVCRPDGHEMVTKRQTYAVVAFDG
Ga0308175_1017839522	3300031938	Soil	MTAFFVPGAPQGQADQAYEDLRDRAELDVGRAPRSVRIYKLSCRLGGTDCETCVGEHDVSGETVHAIFDFGDRYAVCRPGGHEMVTKRQTYAVVAFDG
Ga0308176_104724992	3300031996	Soil	MTAFFVPGAPREQADQAYEDLRDRAELDVGRAPRAVRIYKLSCRRGGADCETCVGEHDITGETVHAIFDFGDRYAVCRPDGHEMVTKRQTYAVVAFDG
Ga0268251_104796871	3300032159	Agave	MTSFFVPDTPAGEQSDRAYEDLRHHAEVAAGRPPRSRRIYKLSCRRGGADRETCVGEQDVAGGTVYAIFDIGDRYVVYVPGGHEIVTKRQTYAVVEFE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F070975

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences