Metagenome Family F071044

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F071044
Family Type	Metagenome
Number of Sequences	122
Average Sequence Length	40 residues
Representative Sequence	MLLYEMFAIGIAVVLVVAAIGGLAARVMMGPEETALLRLA
Number of Associated Samples	89
Number of Associated Scaffolds	122

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	96.72 %
% of genes near scaffold ends (potentially truncated)	95.08 %
% of genes from short scaffolds (< 2000 bps)	90.16 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (74.590 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (35.246 % of family members)
Environment Ontology (ENVO)	Unclassified (58.197 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (49.180 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 85.00% β-sheet: 0.00% Coil/Unstructured: 15.00%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 122 Family Scaffolds
PF07883	Cupin_2	3.28
PF04392	ABC_sub_bind	3.28
PF16694	Cytochrome_P460	1.64
PF03713	DUF305	1.64
PF08281	Sigma70_r4_2	1.64
PF01596	Methyltransf_3	1.64
PF03330	DPBB_1	0.82
PF00239	Resolvase	0.82
PF13827	DUF4189	0.82
PF02371	Transposase_20	0.82
PF07750	GcrA	0.82
PF03797	Autotransporter	0.82
PF04542	Sigma70_r2	0.82
PF02597	ThiS	0.82
PF13193	AMP-binding_C	0.82
PF03466	LysR_substrate	0.82
PF02777	Sod_Fe_C	0.82
PF01738	DLH	0.82

COG ID	Name	Functional Category	% Frequency in 122 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	3.28
COG2518	Protein-L-isoaspartate O-methyltransferase	Posttranslational modification, protein turnover, chaperones [O]	1.64
COG3544	Uncharacterized conserved protein, DUF305 family	Function unknown [S]	1.64
COG4122	tRNA 5-hydroxyU34 O-methylase TrmR/YrrM	Translation, ribosomal structure and biogenesis [J]	1.64
COG4123	tRNA1(Val) A37 N6-methylase TrmN6	Translation, ribosomal structure and biogenesis [J]	1.64
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.82
COG0605	Superoxide dismutase	Inorganic ion transport and metabolism [P]	0.82
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.82
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.82
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.82
COG1977	Molybdopterin synthase sulfur carrier subunit MoaD	Coenzyme transport and metabolism [H]	0.82
COG2104	Sulfur carrier protein ThiS (thiamine biosynthesis)	Coenzyme transport and metabolism [H]	0.82
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.82
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.82
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.82
COG5352	Uncharacterized conserved protein	Function unknown [S]	0.82

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	74.59 %
Unclassified	root	N/A	25.41 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	74.59 %
Unclassified	root	N/A	25.41 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	74.59 %
Unclassified	root	N/A	25.41 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	68.85 %
Unclassified	root	N/A	25.41 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	63.11 %
Unclassified	root	N/A	25.41 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.41 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	18.03 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.46 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.41 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	18.03 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.64 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.41 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	18.03 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.82 %
Azotobacter group	subfamily	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Azotobacter group	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.41 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	18.03 %
Azotobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Azotobacter group → Azotobacter	0.82 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.41 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	18.03 %
Bradyrhizobium sp. Cp5.3	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Cp5.3	0.82 %
Azotobacter beijerinckii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Azotobacter group → Azotobacter → Azotobacter beijerinckii	0.82 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_16989912	Not Available	1255	Open in IMG/M
2088090014\|GPIPI_17046948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Cp5.3	2951	Open in IMG/M
2166559005\|cont_contig62844	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	764	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10068801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	898	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10108947	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	680	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10166931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	525	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1035185	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	915	Open in IMG/M
3300000837\|AP72_2010_repI_A100DRAFT_1043948	Not Available	630	Open in IMG/M
3300001867\|JGI12627J18819_10203181	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	800	Open in IMG/M
3300005164\|Ga0066815_10068693	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	618	Open in IMG/M
3300005174\|Ga0066680_10506219	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	759	Open in IMG/M
3300005332\|Ga0066388_107948922	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300005764\|Ga0066903_106175107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	626	Open in IMG/M
3300005764\|Ga0066903_109119228	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	501	Open in IMG/M
3300006028\|Ga0070717_10039182	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3855	Open in IMG/M
3300006028\|Ga0070717_11585005	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	593	Open in IMG/M
3300006038\|Ga0075365_10824985	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	654	Open in IMG/M
3300006796\|Ga0066665_11490197	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	527	Open in IMG/M
3300006880\|Ga0075429_101860452	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	522	Open in IMG/M
3300006904\|Ga0075424_100498501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1300	Open in IMG/M
3300009143\|Ga0099792_11264457	Not Available	503	Open in IMG/M
3300009792\|Ga0126374_11173378	Not Available	613	Open in IMG/M
3300010337\|Ga0134062_10369580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	695	Open in IMG/M
3300010358\|Ga0126370_10180866	All Organisms → cellular organisms → Bacteria	1572	Open in IMG/M
3300010358\|Ga0126370_10478236	Not Available	1046	Open in IMG/M
3300010360\|Ga0126372_10880389	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	896	Open in IMG/M
3300010376\|Ga0126381_102205099	All Organisms → cellular organisms → Bacteria	792	Open in IMG/M
3300010868\|Ga0124844_1052728	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1436	Open in IMG/M
3300010868\|Ga0124844_1067552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1307	Open in IMG/M
3300010868\|Ga0124844_1098768	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1107	Open in IMG/M
3300011271\|Ga0137393_11165387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	654	Open in IMG/M
3300012189\|Ga0137388_11685106	Not Available	568	Open in IMG/M
3300012210\|Ga0137378_10124919	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2376	Open in IMG/M
3300012350\|Ga0137372_11092287	Not Available	548	Open in IMG/M
3300012930\|Ga0137407_11580709	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	624	Open in IMG/M
3300012951\|Ga0164300_10107258	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1238	Open in IMG/M
3300012971\|Ga0126369_10513523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1258	Open in IMG/M
3300012971\|Ga0126369_13512415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	513	Open in IMG/M
3300015371\|Ga0132258_10400813	All Organisms → cellular organisms → Bacteria	3408	Open in IMG/M
3300016270\|Ga0182036_10408121	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1060	Open in IMG/M
3300016270\|Ga0182036_10916891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	719	Open in IMG/M
3300016270\|Ga0182036_10919951	Not Available	718	Open in IMG/M
3300016294\|Ga0182041_10482509	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1071	Open in IMG/M
3300016294\|Ga0182041_11791886	Not Available	569	Open in IMG/M
3300016294\|Ga0182041_12224977	Not Available	512	Open in IMG/M
3300016341\|Ga0182035_11665923	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	576	Open in IMG/M
3300016341\|Ga0182035_12072365	Not Available	517	Open in IMG/M
3300016357\|Ga0182032_10802503	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	795	Open in IMG/M
3300016371\|Ga0182034_10532207	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Azotobacter group → Azotobacter → Azotobacter beijerinckii	984	Open in IMG/M
3300016371\|Ga0182034_10791658	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	811	Open in IMG/M
3300016371\|Ga0182034_11356065	Not Available	621	Open in IMG/M
3300016387\|Ga0182040_10284981	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1257	Open in IMG/M
3300016422\|Ga0182039_10758407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	859	Open in IMG/M
3300020579\|Ga0210407_11080945	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	609	Open in IMG/M
3300021560\|Ga0126371_11619011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	773	Open in IMG/M
3300025905\|Ga0207685_10594164	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	593	Open in IMG/M
3300025915\|Ga0207693_10762097	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	747	Open in IMG/M
3300025916\|Ga0207663_10423873	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1022	Open in IMG/M
3300025928\|Ga0207700_10970772	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	760	Open in IMG/M
3300025929\|Ga0207664_10719778	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	898	Open in IMG/M
3300026551\|Ga0209648_10437377	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	824	Open in IMG/M
3300027071\|Ga0209214_1033390	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	682	Open in IMG/M
3300027874\|Ga0209465_10115203	All Organisms → cellular organisms → Bacteria → Proteobacteria	1323	Open in IMG/M
3300031545\|Ga0318541_10082892	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1698	Open in IMG/M
3300031561\|Ga0318528_10366018	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	774	Open in IMG/M
3300031640\|Ga0318555_10381981	Not Available	763	Open in IMG/M
3300031682\|Ga0318560_10202571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1060	Open in IMG/M
3300031719\|Ga0306917_10747880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	767	Open in IMG/M
3300031719\|Ga0306917_11082689	Not Available	624	Open in IMG/M
3300031719\|Ga0306917_11209340	Not Available	586	Open in IMG/M
3300031719\|Ga0306917_11465846	Not Available	525	Open in IMG/M
3300031723\|Ga0318493_10773310	Not Available	540	Open in IMG/M
3300031724\|Ga0318500_10008858	All Organisms → cellular organisms → Bacteria	3423	Open in IMG/M
3300031724\|Ga0318500_10362450	Not Available	717	Open in IMG/M
3300031724\|Ga0318500_10515896	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	601	Open in IMG/M
3300031744\|Ga0306918_10046414	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2859	Open in IMG/M
3300031744\|Ga0306918_10918530	Not Available	681	Open in IMG/M
3300031744\|Ga0306918_11283725	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	563	Open in IMG/M
3300031771\|Ga0318546_10089150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2004	Open in IMG/M
3300031771\|Ga0318546_10161942	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1513	Open in IMG/M
3300031793\|Ga0318548_10463108	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	620	Open in IMG/M
3300031796\|Ga0318576_10622411	Not Available	508	Open in IMG/M
3300031798\|Ga0318523_10266554	All Organisms → cellular organisms → Bacteria → Proteobacteria	855	Open in IMG/M
3300031805\|Ga0318497_10079080	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1740	Open in IMG/M
3300031819\|Ga0318568_10422653	All Organisms → cellular organisms → Bacteria → Proteobacteria	830	Open in IMG/M
3300031832\|Ga0318499_10119357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1025	Open in IMG/M
3300031833\|Ga0310917_10334537	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1026	Open in IMG/M
3300031835\|Ga0318517_10010805	All Organisms → cellular organisms → Bacteria	3260	Open in IMG/M
3300031846\|Ga0318512_10123265	All Organisms → cellular organisms → Bacteria → Proteobacteria	1234	Open in IMG/M
3300031846\|Ga0318512_10282778	All Organisms → cellular organisms → Bacteria → Proteobacteria	822	Open in IMG/M
3300031859\|Ga0318527_10197370	Not Available	851	Open in IMG/M
3300031859\|Ga0318527_10388954	Not Available	594	Open in IMG/M
3300031879\|Ga0306919_10517012	Not Available	920	Open in IMG/M
3300031879\|Ga0306919_10881309	Not Available	686	Open in IMG/M
3300031890\|Ga0306925_10179863	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2278	Open in IMG/M
3300031896\|Ga0318551_10908608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	514	Open in IMG/M
3300031910\|Ga0306923_10470240	All Organisms → cellular organisms → Bacteria	1424	Open in IMG/M
3300031941\|Ga0310912_10185151	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1587	Open in IMG/M
3300031941\|Ga0310912_10555074	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	894	Open in IMG/M
3300031942\|Ga0310916_11376895	Not Available	578	Open in IMG/M
3300031942\|Ga0310916_11477209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	555	Open in IMG/M
3300031945\|Ga0310913_10851194	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	642	Open in IMG/M
3300031945\|Ga0310913_11004943	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	584	Open in IMG/M
3300031946\|Ga0310910_10172203	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1667	Open in IMG/M
3300031946\|Ga0310910_10744690	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	773	Open in IMG/M
3300031947\|Ga0310909_10011330	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6108	Open in IMG/M
3300031947\|Ga0310909_11665519	Not Available	504	Open in IMG/M
3300031954\|Ga0306926_11306262	Not Available	846	Open in IMG/M
3300031959\|Ga0318530_10065524	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1396	Open in IMG/M
3300031981\|Ga0318531_10192304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	919	Open in IMG/M
3300031981\|Ga0318531_10522801	Not Available	537	Open in IMG/M
3300032001\|Ga0306922_12282621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	519	Open in IMG/M
3300032035\|Ga0310911_10173461	Not Available	1220	Open in IMG/M
3300032039\|Ga0318559_10312046	Not Available	730	Open in IMG/M
3300032041\|Ga0318549_10374610	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	642	Open in IMG/M
3300032052\|Ga0318506_10003490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4529	Open in IMG/M
3300032065\|Ga0318513_10025468	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2515	Open in IMG/M
3300032076\|Ga0306924_10355533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1679	Open in IMG/M
3300032174\|Ga0307470_10391967	All Organisms → cellular organisms → Bacteria → Proteobacteria	979	Open in IMG/M
3300032205\|Ga0307472_101883933	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	596	Open in IMG/M
3300032261\|Ga0306920_101856911	Not Available	848	Open in IMG/M
3300033289\|Ga0310914_10698004	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	910	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.90%
Host-Associated	Host-Associated	3.28%
Engineered	Engineered	0.82%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.90%
Plants	Host-Associated → Plants	3.28%
Modeled	Engineered → Modeled	0.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.64%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.82%
Roots	Host-Associated → Plants → Roots	0.82%
Simulated Communities (Sequence Read Mixture)	Engineered → Modeled → Simulated Communities (Sequence Read Mixture)	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	82.79%
Loam	Environmental → Terrestrial → Soil → Loam	13.11%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.64%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.82%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.82%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	64.75%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.38%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.74%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.10%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.64%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.82%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.82%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	35.25%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	23.77%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.56%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.74%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	4.10%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.28%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.64%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.64%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.82%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.82%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.82%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.82%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.82%
Simulated	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated	0.82%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2166559005	Simulated microbial communities from Lyon, France	Engineered	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000837	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A100	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300005164	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027071	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_00995510	2088090014	Soil	MLIAIAIAVVLVMAAIDRLAARVMMRPEEMALLRLARAAT
GPIPI_00182180	2088090014	Soil	MLLYEILIAIGIALVLVVAAIDRLAARVIMGPEEMALLRLARA
cont_0844.00004240	2166559005	Simulated	MLLYEMLIAIGIAVVLVVAAIDRLAARVMMGPEDWRCCG
AF_2010_repII_A1DRAFT_100688011	3300000597	Forest Soil	MLLYEMFAIGIAVVLVVVAIGGLAAREMMGPEETALSRLARA
AF_2010_repII_A1DRAFT_101089472	3300000597	Forest Soil	MLLYEMFAIGIVGVLVVAAIGGLAARVMMGPEETALL
AF_2010_repII_A1DRAFT_101669311	3300000597	Forest Soil	MLLYEMFALGIAVVLVVAAIDRLAARIMMGPEEMALLRLAR
AF_2010_repII_A100DRAFT_10351853	3300000655	Forest Soil	MLLYEMFAIGIAVVLVVAAIGGLAARVMMGPEETALMRLAR
AP72_2010_repI_A100DRAFT_10439481	3300000837	Forest Soil	MLLYEMFAIGIAVVLVVAAIGGLAARVTMGPEETALLRLA
JGI12627J18819_102031812	3300001867	Forest Soil	MLLYEMLIAIGIAVVLVVAAIDRLAARVITGPEEMALLRLA
Ga0066815_100686931	3300005164	Soil	MLLYEMLFATAIGIAVVLVVAAIDRLATRVMMGPEEMALLR
Ga0066680_105062191	3300005174	Soil	MLLYEMLIAIGIAVVLVVAAIDRLAARVMMGPEDMALLRLARAA
Ga0066388_1079489222	3300005332	Tropical Forest Soil	MFLYEMLIAIGIAGVLVVAAIDRLATRVMMGPYELAALHSITSSTSP*
Ga0066903_1061751072	3300005764	Tropical Forest Soil	MLLYEMLIAIGIAVVLVVAAIDRLAARVMMGPEEMALLRLARAAAAQH
Ga0066903_1091192281	3300005764	Tropical Forest Soil	MLLYEMFAIGIAAVLVVAAIGGLARVMMGPEETALL
Ga0070717_100391821	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MLLYEMLIAIGIAVVLVVAAIDRLATRVMMGPEEMALLRLARA
Ga0070717_115850051	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MLLYEMLIAIGIAVVLVVAAIDRLAARVMMGPEEMALLRLARAA
Ga0075365_108249852	3300006038	Populus Endosphere	MLLYEMFAIVIAVVCVVAAIGGLAARAMMGPEEMSLLRLARAAE
Ga0066665_114901971	3300006796	Soil	MFLYEMLIAIGIAVVLVVAAIDRLAARVMMGPEEMALLRLARA
Ga0075429_1018604521	3300006880	Populus Rhizosphere	MLLFEMLIAIGIVVVLVVAAIDRLAARVMMGPEDMALFRLARA
Ga0075424_1004985011	3300006904	Populus Rhizosphere	MLLYEMLMIGIAVVLVMAAIDRLAARVMMGPEEMALLRL
Ga0099792_112644571	3300009143	Vadose Zone Soil	MLIAIGIAVVLVAAAIGELAARLMMGPEERALLRAARAAA
Ga0126374_111733781	3300009792	Tropical Forest Soil	MLLYEMFAIGIVVVLVVAAIGGLAAREMMGPEETAL
Ga0134062_103695801	3300010337	Grasslands Soil	MLIAIGIAVVLVVAAIDRLAARVMMGPEEMALLRLARAAEAQRRL
Ga0126370_101808662	3300010358	Tropical Forest Soil	MLLYEMFAIGIAVVLVVAAIGGLAARVMMGPEETALLRL
Ga0126370_104782361	3300010358	Tropical Forest Soil	MLLYEMFAIGIAVVLVVAAIGGLAARVMMGPEETALLRLV
Ga0126372_108803893	3300010360	Tropical Forest Soil	MLLYEMFAIGIAAVLVVAAISSLARVMMGPEETALLRLARA
Ga0126381_1022050992	3300010376	Tropical Forest Soil	MLLDEMLIAIGIAVVLVLAIGGLAARVKMGPEEMALSRAARAAAA
Ga0124844_10527282	3300010868	Tropical Forest Soil	MMLLYEMFAIGIAVVLVVAAIGGLAARVMMGPEETALSRR*
Ga0124844_10675523	3300010868	Tropical Forest Soil	MLLYEMFAIGIAVVLVVAAIGGLAARVMMGPEETALSRR*
Ga0124844_10987681	3300010868	Tropical Forest Soil	EMFAIGIAVVLVVAAIGGLAARVMMGPEETALSRR*
Ga0137393_111653871	3300011271	Vadose Zone Soil	MLLYEMVIAIGIAVVLVVAAIDRLATRVMMGPEEMALLRLARAAA
Ga0137388_116851061	3300012189	Vadose Zone Soil	MGEANMFLYEMLIAIGIAVVLVVAAIDRLAARVMM
Ga0137378_101249194	3300012210	Vadose Zone Soil	MLLYEMLIMLIMLIAIGIAVVLVGAAIDRLAARVMMGPEEM
Ga0137372_110922872	3300012350	Vadose Zone Soil	MSLYEMVIAIGIAVVLVAAAIGELAARLMMGPEERALLRAA
Ga0137407_115807091	3300012930	Vadose Zone Soil	MLIAIGIAVVLVVAAIDRLAARVIARVMMGPEEMALLRLA
Ga0164300_101072584	3300012951	Soil	MLLYEIFAIGIAVVLVVAAIGGLATRVMMGPEEMALLRLARAAA
Ga0126369_105135231	3300012971	Tropical Forest Soil	MLLYEMLIAIGIAVVLVVAAIDRLATRVMMGPEEMAL
Ga0126369_135124152	3300012971	Tropical Forest Soil	MLLYEMFAIGIAVALVVAAIGGLAARVMMGPEETALLRLAR
Ga0132258_104008136	3300015371	Arabidopsis Rhizosphere	MLLYETLALGIAVVLVGAAIGGLAGPGIRGPEETGLA
Ga0182036_104081211	3300016270	Soil	MLLLYEMVIAIPVVLVVTAIVGLAARVMMGPEEMALL
Ga0182036_109168911	3300016270	Soil	MLLYEMLIAIVIAVVLVVAAIDRLATRVMMGPEEMALLRLARA
Ga0182036_109199512	3300016270	Soil	MLLYETLIAIGIAVVLVVAAIDRLAARVMMGLDEMAL
Ga0182041_104825092	3300016294	Soil	LYEMFAIGIAVVLLVAAIDGLAARLMGPEETALLRLA
Ga0182041_117918861	3300016294	Soil	VMLYEMFAIGIAVVLLVAAIDGLAARLMGPEETALL
Ga0182041_122249771	3300016294	Soil	MLLYEMFAIGIAVVLLVAAIDGLAARLMGPEETALLRLARA
Ga0182035_116659231	3300016341	Soil	MLLYEMLIAIGIAVVLVVAALGRLATRVMMGPEEMALLRLAQAAAAQ
Ga0182035_120723651	3300016341	Soil	MLYEMFAIGIAVVLLVAAIDGLAARLMGPEETALLRL
Ga0182032_108025031	3300016357	Soil	MLLYEMLIAIVIAVVLVVAAIDRLATRVMMGPEEMALLRLARAAA
Ga0182034_105322071	3300016371	Soil	MLLYEMLMAIGIAVVLVLAMGGLAARVKMCPEEMALSRAARAAAA
Ga0182034_107916581	3300016371	Soil	MLLYEMLIAIVIAVVLVVAAIDRLATRVMMGPEEMALL
Ga0182034_113560652	3300016371	Soil	MLLYEMFAIGIAVVLVVAAIGGLAARVMMGPEETALLRLARAAPA
Ga0182040_102849812	3300016387	Soil	MLLYEMFAIGIAVVLVVAAIGSLAARVMMGPEETALLRLARA
Ga0182039_107584071	3300016422	Soil	MLLLYEMVIAIPVVLVVTAIVGLAARVMMGPEEMALLRE
Ga0210407_110809452	3300020579	Soil	MLLYEMLIAIGIAVVLVVAAIDRLAARVMMGPEKM
Ga0126371_116190111	3300021560	Tropical Forest Soil	MLLYEMFAIGIAVVLVVAAIGGLAARVMMGPEETA
Ga0207685_105941641	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MLLYEILIAIGIALVLVVAAIDRLAARVIMGPEEMALLR
Ga0207693_107620972	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MLLYEMLIAIGIAVVLVVAAIDRLAARVMMGPGEMSLLRLARAATA
Ga0207663_104238731	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MLLYEMLIAIGIAVVLVVAAIDRLAARVMMGPGESLL
Ga0207700_109707722	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MLLYEMLIAIGIAVVLVVAAIDRLAARVMMGPEEMALLRLAR
Ga0207664_107197782	3300025929	Agricultural Soil	MLLYEMLIAIGIAVVLVVAAIDRLATRVMMGPEEMALLRLAR
Ga0209648_104373771	3300026551	Grasslands Soil	MLLYEMLIAIGIAVVLVVAAIDRLATRVMMGPEEW
Ga0209214_10333901	3300027071	Forest Soil	MLLYEMLIAIGIAVVLAVAAIDRLATRVMMGPEEMAL
Ga0209465_101152031	3300027874	Tropical Forest Soil	MFLYEMLIAIGIAGVLVVAAIDRLATRVMMGPYELAALHSITSS
Ga0318541_100828921	3300031545	Soil	MLLYEMFALGIAVVLVVAAIGGLAARVMMGPEETALLR
Ga0318528_103660182	3300031561	Soil	MLLYETLIAIGIAVVLVVAAIDRLAARVMMGLDEMALL
Ga0318555_103819811	3300031640	Soil	MLLYEMFAIGIAVVLLVAAIDGLAARLMGPEETALLRLA
Ga0318560_102025711	3300031682	Soil	MLLYETLIAIGIAVVLVVAAIDRLAARVMMGLDEM
Ga0306917_107478801	3300031719	Soil	MLLYEMFAIGIAVVLVVAAIGGLAARVMMGPEETALLRLARA
Ga0306917_110826891	3300031719	Soil	MLLYEMFAIGIAVILVVAAIGGLAARVMMGPEGTALLR
Ga0306917_112093401	3300031719	Soil	VMLYEMFAIGIAVVLLVAAIDGLAARLMGPEETALLRLAR
Ga0306917_114658461	3300031719	Soil	MLLYEMFAIGIAVVLVVAAIGGLAARVMRGPEETALLRLA
Ga0318493_107733101	3300031723	Soil	VMLLYEMFAIGIAVVLVVAAIGGLAALVMMGPEETAL
Ga0318500_100088581	3300031724	Soil	MLLYEMFAIGIAVVLVVAAIGGLAARVMMGPEETALLR
Ga0318500_103624501	3300031724	Soil	MLLYEMFAIGIAVILVVAAIGGLAARVMMGPEETALLRLARAAPA
Ga0318500_105158962	3300031724	Soil	MLLYEMLAIGIAVVLVVAAIGGLAARVMSGPEETALLRLARA
Ga0306918_100464141	3300031744	Soil	MLLYEMFAIGIAVVLVVAAIDGLAARVMMGPEETALLRRA
Ga0306918_109185301	3300031744	Soil	MLLYEMFAIGIAVVLVVAAIGGLAVRVMMGPEETALLRLARAVPAQ
Ga0306918_112837252	3300031744	Soil	MFLYEMLIAIGIAVVLVVAAIDRLATRVMMGPEEMALLRL
Ga0318546_100891501	3300031771	Soil	MLLYEMFAIGIAVVLVVAAIGGLAALVMMGPEETALSRLARAAPA
Ga0318546_101619421	3300031771	Soil	MLLYEMFAIGIALVLVVAAIGGLAALVMMGPEETALSRLARAAPA
Ga0318548_104631081	3300031793	Soil	MLLYEMLIAIGIAVVLVVAAIDRLATRVMIGPEEMALLRLARAAAAQH
Ga0318576_106224111	3300031796	Soil	VMLLDEMFAIGIAVVLVVAAIGGLAARVMMGLEETALL
Ga0318523_102665542	3300031798	Soil	MLLYEMFAIGIAVVLVVAAIGSLAALVMMGPEETALSRLAR
Ga0318497_100790801	3300031805	Soil	MLLYEMFAIGIAVVLVVAAIGSLAARVMMGPEETA
Ga0318568_104226532	3300031819	Soil	MLLYEMFPIGIAVVLVVAAIGGLAALVMMGPEETALS
Ga0318499_101193571	3300031832	Soil	MLLYEMFAIGIAVVLVVAAIGSLAARVMMGPEETALL
Ga0310917_103345372	3300031833	Soil	MLLYEMFAIGIAVVLVMAAIGGLAPRVMMGPEETALLRLA
Ga0318517_100108055	3300031835	Soil	MLLYEMFALGIAVVLVVAAIGGLAARVMMGPEETALLRLAR
Ga0318512_101232652	3300031846	Soil	MLLYEMLIAIGIAVVLVVAAIDRLATRVMIGPEEMALLRL
Ga0318512_102827781	3300031846	Soil	MLLYEMFPIGIAVVLVVAAIGGLAALVMMGPEETALSRLARAA
Ga0318527_101973701	3300031859	Soil	MLLYEMFAIGIAVVLLVAAIDGLAARVMGPEETALLRLA
Ga0318527_103889541	3300031859	Soil	VMLLYEMFAIGIAVVLVVAAIGGLAALVMMGPEETALLRLARAAP
Ga0306919_105170122	3300031879	Soil	MLLYEMFAIGIAVVLVVAAIGGLAARVMMGPEETALSR
Ga0306919_108813092	3300031879	Soil	MLLYEMFAIGIAVVLLVAAIDGLAARLMGPEETAL
Ga0306925_101798635	3300031890	Soil	MLLYEMFAIGIAVAAIGSLAARVMMGPEETALLRLARAAPAQR
Ga0318551_109086081	3300031896	Soil	MLLYEMLIAIGIAGVLVVAAIDRLATRVMIGPEETALLRLARAAP
Ga0306923_104702401	3300031910	Soil	MMLLYEMFAIGIAVVLVVAAIGGLAARVMMGPEET
Ga0310912_101851511	3300031941	Soil	MLYEMFAIGIAVVLLVAAIDGLAARLMGPEETALLRLARAAP
Ga0310912_105550742	3300031941	Soil	MLLYEMFAIGIVVVLVVAAIGGLAARVMMGSEETAL
Ga0310916_113768951	3300031942	Soil	VMLYEMFAIGIAVVLLVAAIDGLAARLMGPEETALLR
Ga0310916_114772092	3300031942	Soil	MLLYEMLIAIGIAVVLVVAVIDRLAARVMMGPEEMA
Ga0310913_108511942	3300031945	Soil	MLLLYEMVIAIPVVLVVTAIVGLAARVMMGPEEMALLREGRAAAA
Ga0310913_110049432	3300031945	Soil	MLLYEMFAIGIALVLVVAAIGGLAARVMMGPEETALSRLAR
Ga0310910_101722031	3300031946	Soil	MLLYEMFAIGIAVVLVVAAIGGLAARVMKGPEETAL
Ga0310910_107446901	3300031946	Soil	MLLLYEMVIAIPVVLVVTAIVGLAARVMMGPEEMALLR
Ga0310909_100113301	3300031947	Soil	MYEMVIAMGIAVVLVMAAIGGLAARVRMGPEETALL
Ga0310909_116655191	3300031947	Soil	MLLYEMFAIGIAVVLVVAAIGGLAARAMRVMMGPEETALLRLARAA
Ga0306926_113062621	3300031954	Soil	MLLYEMFAIGIAVVLVVAALGGLAARVMMGPEETALLRLARAAP
Ga0318530_100655241	3300031959	Soil	MLLYEMFAIGIAVVLVMAAMGGLAPRVMMGPEETALLRLARAV
Ga0318531_101923043	3300031981	Soil	MLLYEMFAIGIVVVLVVAAIGGLAARVIMGSEETALV
Ga0318531_105228011	3300031981	Soil	MLLYEMFAIGIAVALVVAAIGRLAARVGPEETALLREARAAV
Ga0306922_122826211	3300032001	Soil	MLLYEMFAIGIAVVLVVAAIDGLAARVMMGPEETALLRLARAAPA
Ga0310911_101734611	3300032035	Soil	MLYEMFAIGIAVVLLVAAIDGLAARLMGPEETALLRLA
Ga0318559_103120462	3300032039	Soil	MLLYEMFAIGIAVVLVMAAMGGLAPRVMMGPEETALLRLARAVPA
Ga0318549_103746101	3300032041	Soil	MLLYEMLIAIGIAVVLVVAAIDRLATRVMIGPEETALLRLAR
Ga0318506_100034906	3300032052	Soil	MLLYEMFAIGIAVVLVVAAIGGLAARVMMGPEETALLRLA
Ga0318513_100254683	3300032065	Soil	MLLYEMFAIGIAVVLLVAAIDGLAARVMGPEETALLRLARA
Ga0306924_103555331	3300032076	Soil	MLLYEMFAIGIAVVLVVAAIGGLAARVMMGPEETALLRLARAA
Ga0307470_103919671	3300032174	Hardwood Forest Soil	MLLYEMLIAIGIAVVLVVAAIDRLAARVMMGPGEMSL
Ga0307472_1018839331	3300032205	Hardwood Forest Soil	MLLYEILIAIGIAVVLVVAAIDRLAARVITGPEEMALLRL
Ga0306920_1018569111	3300032261	Soil	MMLLYEMFAIGIAVVLVVAAIGGLAARVMMGPEETALSRLARA
Ga0310914_106980043	3300033289	Soil	MLLYEIFAIGIAVVLVVAAIGGLAARVMMGPEETALARLARAA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F071044

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences