Metagenome Family F071106

Basic Information
Family ID	F071106
Family Type	Metagenome
Number of Sequences	122
Average Sequence Length	43 residues
Representative Sequence	PRADARPFGIAVDAGNNVWYTDLSGWLGRLDADRARAR
Number of Associated Samples	113
Number of Associated Scaffolds	122

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.82 %
% of genes near scaffold ends (potentially truncated)	97.54 %
% of genes from short scaffolds (< 2000 bps)	90.16 %
Associated GOLD sequencing projects	106
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.57

Most Common Taxonomy
Group	Bacteria (98.361 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (18.852 % of family members)
Environment Ontology (ENVO)	Unclassified (31.967 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (40.984 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 22.73% Coil/Unstructured: 77.27%
Feature Viewer

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Pfam ID	Name	% Frequency in 122 Family Scaffolds
PF03824	NicO	24.59
PF13386	DsbD_2	7.38
PF13795	HupE_UreJ_2	6.56
PF03773	ArsP_1	4.92
PF01717	Meth_synt_2	3.28
PF02683	DsbD	2.46
PF07452	CHRD	1.64
PF13145	Rotamase_2	1.64
PF00296	Bac_luciferase	1.64
PF00753	Lactamase_B	1.64
PF04392	ABC_sub_bind	0.82
PF14885	GHL15	0.82
PF03150	CCP_MauG	0.82
PF01471	PG_binding_1	0.82
PF02630	SCO1-SenC	0.82
PF13546	DDE_5	0.82
PF01551	Peptidase_M23	0.82
PF04909	Amidohydro_2	0.82
PF13358	DDE_3	0.82
PF10282	Lactonase	0.82
PF01548	DEDD_Tnp_IS110	0.82
PF01266	DAO	0.82
PF13442	Cytochrome_CBB3	0.82
PF02899	Phage_int_SAM_1	0.82
PF13577	SnoaL_4	0.82
PF03466	LysR_substrate	0.82

COG ID	Name	Functional Category	% Frequency in 122 Family Scaffolds
COG0701	Uncharacterized membrane protein YraQ, UPF0718 family	Function unknown [S]	4.92
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	3.28
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	1.64
COG1225	Peroxiredoxin	Posttranslational modification, protein turnover, chaperones [O]	0.82
COG1858	Cytochrome c peroxidase	Posttranslational modification, protein turnover, chaperones [O]	0.82
COG1999	Cytochrome oxidase Cu insertion factor, SCO1/SenC/PrrC family	Posttranslational modification, protein turnover, chaperones [O]	0.82
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.82
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.82
COG4973	Site-specific recombinase XerC	Replication, recombination and repair [L]	0.82
COG4974	Site-specific recombinase XerD	Replication, recombination and repair [L]	0.82

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.36 %
Unclassified	root	N/A	1.64 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.36 %
Unclassified	root	N/A	1.64 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.36 %
Unclassified	root	N/A	1.64 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	30.33 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	29.51 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.64 %
Unclassified	root	N/A	1.64 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	30.33 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	18.03 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.64 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.64 %
Unclassified	root	N/A	1.64 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	30.33 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	13.93 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	1.64 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	1.64 %
Unclassified	root	N/A	1.64 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.82 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	16.39 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	13.11 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.64 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.64 %
Unclassified	root	N/A	1.64 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.82 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	16.39 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	13.11 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.64 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.64 %
Unclassified	root	N/A	1.64 %
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	0.82 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	16.39 %
Bradyrhizobium arachidis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium arachidis	4.92 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.64 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.64 %
Unclassified	root	N/A	1.64 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.82 %
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	0.82 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	16.39 %
Bradyrhizobium arachidis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium arachidis	4.92 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.64 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.64 %
Unclassified	root	N/A	1.64 %
Bradyrhizobium sp. ARR65	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ARR65	0.82 %
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	0.82 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000550\|F24TB_10423636	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1390	Open in IMG/M
3300000956\|JGI10216J12902_105878810	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	530	Open in IMG/M
3300004643\|Ga0062591_100459538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium arachidis	1077	Open in IMG/M
3300005176\|Ga0066679_10847740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	580	Open in IMG/M
3300005177\|Ga0066690_10058631	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2371	Open in IMG/M
3300005180\|Ga0066685_10550071	All Organisms → cellular organisms → Bacteria	796	Open in IMG/M
3300005186\|Ga0066676_10390883	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ARR65	936	Open in IMG/M
3300005330\|Ga0070690_101255163	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium arachidis	592	Open in IMG/M
3300005364\|Ga0070673_102180806	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	526	Open in IMG/M
3300005446\|Ga0066686_10074701	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2132	Open in IMG/M
3300005447\|Ga0066689_10715564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	626	Open in IMG/M
3300005536\|Ga0070697_102066361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	510	Open in IMG/M
3300005540\|Ga0066697_10700908	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	554	Open in IMG/M
3300005549\|Ga0070704_101042057	All Organisms → cellular organisms → Bacteria → Proteobacteria	741	Open in IMG/M
3300005555\|Ga0066692_10776203	All Organisms → cellular organisms → Bacteria → Proteobacteria	590	Open in IMG/M
3300005575\|Ga0066702_10633970	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium arachidis	640	Open in IMG/M
3300005617\|Ga0068859_100490034	All Organisms → cellular organisms → Bacteria → Proteobacteria	1324	Open in IMG/M
3300005719\|Ga0068861_100902431	All Organisms → cellular organisms → Bacteria	837	Open in IMG/M
3300005764\|Ga0066903_100355408	All Organisms → cellular organisms → Bacteria	2372	Open in IMG/M
3300005843\|Ga0068860_101220807	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	772	Open in IMG/M
3300005844\|Ga0068862_101830731	All Organisms → cellular organisms → Bacteria → Proteobacteria	616	Open in IMG/M
3300006049\|Ga0075417_10150815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium arachidis	1082	Open in IMG/M
3300006755\|Ga0079222_10635780	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium arachidis	825	Open in IMG/M
3300006794\|Ga0066658_10188362	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium arachidis	1083	Open in IMG/M
3300006845\|Ga0075421_101624414	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300006852\|Ga0075433_10021546	All Organisms → cellular organisms → Bacteria	5405	Open in IMG/M
3300006852\|Ga0075433_11334945	All Organisms → cellular organisms → Bacteria → Proteobacteria	621	Open in IMG/M
3300006854\|Ga0075425_101965462	Not Available	654	Open in IMG/M
3300006871\|Ga0075434_100501668	All Organisms → cellular organisms → Bacteria → Proteobacteria	1234	Open in IMG/M
3300007255\|Ga0099791_10118503	All Organisms → cellular organisms → Bacteria	1226	Open in IMG/M
3300009038\|Ga0099829_10302360	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1312	Open in IMG/M
3300009088\|Ga0099830_11011618	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300009090\|Ga0099827_10571661	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	974	Open in IMG/M
3300009137\|Ga0066709_100233650	All Organisms → cellular organisms → Bacteria	2446	Open in IMG/M
3300009147\|Ga0114129_10080449	All Organisms → cellular organisms → Bacteria → Proteobacteria	4529	Open in IMG/M
3300009147\|Ga0114129_10501326	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1586	Open in IMG/M
3300009162\|Ga0075423_11172217	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	819	Open in IMG/M
3300009176\|Ga0105242_12237606	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	592	Open in IMG/M
3300009177\|Ga0105248_10781114	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1078	Open in IMG/M
3300009553\|Ga0105249_13269178	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	521	Open in IMG/M
3300009678\|Ga0105252_10008013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3802	Open in IMG/M
3300009810\|Ga0105088_1074473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	601	Open in IMG/M
3300010303\|Ga0134082_10562797	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300010336\|Ga0134071_10718786	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	530	Open in IMG/M
3300010358\|Ga0126370_10389089	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1141	Open in IMG/M
3300010359\|Ga0126376_10475298	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1149	Open in IMG/M
3300010360\|Ga0126372_10233374	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1563	Open in IMG/M
3300010360\|Ga0126372_10592363	All Organisms → cellular organisms → Bacteria	1062	Open in IMG/M
3300010360\|Ga0126372_12997137	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300010361\|Ga0126378_11878608	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300010366\|Ga0126379_12951970	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300010376\|Ga0126381_104061190	Not Available	569	Open in IMG/M
3300010403\|Ga0134123_11933767	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	647	Open in IMG/M
3300011416\|Ga0137422_1006366	All Organisms → cellular organisms → Bacteria	2674	Open in IMG/M
3300012096\|Ga0137389_11033811	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	704	Open in IMG/M
3300012096\|Ga0137389_11236412	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300012189\|Ga0137388_10493771	All Organisms → cellular organisms → Bacteria → Proteobacteria	1137	Open in IMG/M
3300012199\|Ga0137383_10345516	All Organisms → cellular organisms → Bacteria	1090	Open in IMG/M
3300012202\|Ga0137363_11132009	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	666	Open in IMG/M
3300012205\|Ga0137362_11079727	All Organisms → cellular organisms → Bacteria → Proteobacteria	682	Open in IMG/M
3300012207\|Ga0137381_10053093	All Organisms → cellular organisms → Bacteria	3351	Open in IMG/M
3300012349\|Ga0137387_10509593	All Organisms → cellular organisms → Bacteria	873	Open in IMG/M
3300012350\|Ga0137372_10362207	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1107	Open in IMG/M
3300012359\|Ga0137385_11009214	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	686	Open in IMG/M
3300012360\|Ga0137375_11311766	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	545	Open in IMG/M
3300012582\|Ga0137358_10703990	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	675	Open in IMG/M
3300012918\|Ga0137396_10233283	All Organisms → cellular organisms → Bacteria	1356	Open in IMG/M
3300012927\|Ga0137416_10653000	All Organisms → cellular organisms → Bacteria	921	Open in IMG/M
3300012929\|Ga0137404_11369850	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	653	Open in IMG/M
3300013306\|Ga0163162_12882771	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	553	Open in IMG/M
3300014325\|Ga0163163_12993911	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	527	Open in IMG/M
3300015356\|Ga0134073_10235724	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	625	Open in IMG/M
3300015373\|Ga0132257_100456224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1562	Open in IMG/M
3300016341\|Ga0182035_10341564	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1241	Open in IMG/M
3300016357\|Ga0182032_10671794	All Organisms → cellular organisms → Bacteria	867	Open in IMG/M
3300016404\|Ga0182037_10642084	All Organisms → cellular organisms → Bacteria	904	Open in IMG/M
3300016404\|Ga0182037_11569949	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	585	Open in IMG/M
3300016445\|Ga0182038_10536435	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1003	Open in IMG/M
3300017657\|Ga0134074_1070179	All Organisms → cellular organisms → Bacteria → Proteobacteria	1191	Open in IMG/M
3300018433\|Ga0066667_12007198	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	532	Open in IMG/M
3300021078\|Ga0210381_10411486	All Organisms → cellular organisms → Bacteria → Proteobacteria	501	Open in IMG/M
3300021559\|Ga0210409_10944376	All Organisms → cellular organisms → Bacteria	736	Open in IMG/M
3300021560\|Ga0126371_11856229	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	723	Open in IMG/M
3300025900\|Ga0207710_10485456	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	640	Open in IMG/M
3300025910\|Ga0207684_11367502	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300025930\|Ga0207701_11121133	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300026298\|Ga0209236_1091372	All Organisms → cellular organisms → Bacteria	1389	Open in IMG/M
3300026313\|Ga0209761_1037900	All Organisms → cellular organisms → Bacteria	2819	Open in IMG/M
3300026318\|Ga0209471_1151619	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	957	Open in IMG/M
3300026324\|Ga0209470_1335865	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	545	Open in IMG/M
3300026326\|Ga0209801_1171546	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	899	Open in IMG/M
3300026538\|Ga0209056_10070026	All Organisms → cellular organisms → Bacteria	3015	Open in IMG/M
3300027527\|Ga0209684_1013607	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1281	Open in IMG/M
3300027655\|Ga0209388_1058280	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1114	Open in IMG/M
3300027875\|Ga0209283_10223359	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1251	Open in IMG/M
3300027882\|Ga0209590_10774892	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	610	Open in IMG/M
3300028381\|Ga0268264_12165587	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	564	Open in IMG/M
3300028536\|Ga0137415_11006675	All Organisms → cellular organisms → Bacteria → Proteobacteria	645	Open in IMG/M
3300028587\|Ga0247828_10155862	All Organisms → cellular organisms → Bacteria	1149	Open in IMG/M
3300030336\|Ga0247826_10008743	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4029	Open in IMG/M
3300031170\|Ga0307498_10111883	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	857	Open in IMG/M
3300031561\|Ga0318528_10125884	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1357	Open in IMG/M
3300031720\|Ga0307469_10703408	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	916	Open in IMG/M
3300031720\|Ga0307469_11210972	All Organisms → cellular organisms → Bacteria	714	Open in IMG/M
3300031720\|Ga0307469_11992100	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	563	Open in IMG/M
3300031720\|Ga0307469_12346002	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300031723\|Ga0318493_10179151	All Organisms → cellular organisms → Bacteria	1111	Open in IMG/M
3300031740\|Ga0307468_100167823	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1437	Open in IMG/M
3300031744\|Ga0306918_10303097	All Organisms → cellular organisms → Bacteria	1231	Open in IMG/M
3300031747\|Ga0318502_10213685	All Organisms → cellular organisms → Bacteria	1118	Open in IMG/M
3300031771\|Ga0318546_10181611	All Organisms → cellular organisms → Bacteria	1430	Open in IMG/M
3300031793\|Ga0318548_10601188	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300031796\|Ga0318576_10335309	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	714	Open in IMG/M
3300031944\|Ga0310884_10113281	All Organisms → cellular organisms → Bacteria	1348	Open in IMG/M
3300032001\|Ga0306922_10456253	All Organisms → cellular organisms → Bacteria	1365	Open in IMG/M
3300032017\|Ga0310899_10407721	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300032065\|Ga0318513_10355233	All Organisms → cellular organisms → Bacteria	714	Open in IMG/M
3300032076\|Ga0306924_11505883	All Organisms → cellular organisms → Bacteria	713	Open in IMG/M
3300032094\|Ga0318540_10195189	All Organisms → cellular organisms → Bacteria	975	Open in IMG/M
3300032180\|Ga0307471_101262448	All Organisms → cellular organisms → Bacteria	902	Open in IMG/M
3300033158\|Ga0335077_12011518	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300034115\|Ga0364945_0218309	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	81.97%
Host-Associated	Host-Associated	18.03%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.51%
Plants	Host-Associated → Plants	18.03%
Aquatic	Environmental → Aquatic	2.46%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	78.69%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.48%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.74%
Sediment	Environmental → Aquatic → Sediment	1.64%
Freshwater	Environmental → Aquatic → Freshwater	0.82%
Floodplain	Environmental → Terrestrial → Floodplain	0.82%
Roots	Host-Associated → Plants → Roots	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	71.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.66%
Loam	Environmental → Terrestrial → Soil → Loam	5.74%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.64%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.82%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.82%
Sand	Environmental → Terrestrial → Soil → Sand	0.82%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.82%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.82%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.15%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	18.85%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	16.39%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.66%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.92%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.28%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.28%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.64%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.64%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.64%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.82%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.82%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.82%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.82%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.82%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	18.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	12.30%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.38%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.56%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.10%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.28%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.28%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.28%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.46%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.46%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.64%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.64%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.82%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.82%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.82%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.82%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.82%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.82%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.82%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.82%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009678	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100	Environmental	Open in IMG/M
3300009810	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_20_30	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011416	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT551_2	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017657	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026318	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300027527	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300034115	Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.57
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.57
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F071106

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F24TB_104236363	3300000550	Soil	GIVREFPLPRRDARPFGVAVDPANNVWYTDLSGWLGKLRADRARNE*
JGI10216J12902_1058788101	3300000956	Soil	GRVHAAAITEFVLPRDDARPFGIAVDAANNVWYTDLSGWLGRLDAERARVR*
Ga0062591_1004595382	3300004643	Soil	AHKLGRVRGGVIKEFALPRRDARPFGVAVDGANNVWYTDLSGWLGMLRGDRARAE*
Ga0066679_108477402	3300005176	Soil	HDGVMAEFPLPRSDARPFDVAVDAANNVWYTDLSGWLGRLSAERARVR*
Ga0066690_100586311	3300005177	Soil	VMAEFPLPRSDARPFDVAVDAANNVWYTDLSGWLGRLSAERARVR*
Ga0066685_105500712	3300005180	Soil	EFRLPRPDARPFGVAVDRANNVWYTDLGGWLGMLRADRARFG*
Ga0066676_103908832	3300005186	Soil	FRLPRPDARPFGVTVDRANNVWYTDLGGWLGMLRADHATSR*
Ga0070690_1012551632	3300005330	Switchgrass Rhizosphere	TEYVLPRADARPFGITVDTGNNVWYTDLSGWLGRLDAERARAR*
Ga0070673_1021808062	3300005364	Switchgrass Rhizosphere	ITEFVLPRADARPFGIAVDVANNVWYTDLSGWLGRLDADQARVR*
Ga0066686_100747013	3300005446	Soil	EFRLPRPDARPFGVTVDRANNVWYTDLGGWLGMLRADHATSR*
Ga0066689_107155641	3300005447	Soil	RLRDGVMAEFPLPRADARPFDVAVDAANNVWYTDLSGWVGTLSAERARAR*
Ga0070697_1020663612	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	FRLPRADARPFGVAVDTANNVWYTDLSGWLGMLPAVAAKAP*
Ga0066697_107009081	3300005540	Soil	PDARPFGITVDAGNNVWYTDLGGWLGRLDADRARAR*
Ga0070704_1010420573	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	ELSRPNARPFGITVDGANNVWYSDLSGWLGRLDASRARGR*
Ga0066692_107762031	3300005555	Soil	IPRDGARPFGVAVDAANNVWYTDLSGWLGMLPAASATSR*
Ga0066702_106339701	3300005575	Soil	VTEFRLPRAEGRPFGVAVDMANNVWYTDLSGWLGMLPADRAKAR*
Ga0068859_1004900341	3300005617	Switchgrass Rhizosphere	ETRAHKLGRVRGGVIKEFALPRRDARPFGVAVDGANNVWYTDLSGWLGMLRGDRARAE*
Ga0068861_1009024312	3300005719	Switchgrass Rhizosphere	RLRDGTITEFPLPRSDARPFGIAVDASGNVWFTDLSGGLGRLSAERTRGR*
Ga0066903_1003554081	3300005764	Tropical Forest Soil	RSDARPFGIAVDAAGNVWYTDLSGTLGRLSAQRARRR*
Ga0068860_1012208072	3300005843	Switchgrass Rhizosphere	PRADARPFGIAVDAGNNVWYTDLSGWLGRLDADRARAR*
Ga0068862_1018307312	3300005844	Switchgrass Rhizosphere	LGRVQGSTIREFVLPREDARPFGIAVDAANNVWYTDLTGWVGRLDADRARGR*
Ga0075417_101508152	3300006049	Populus Rhizosphere	RLGRVHGGAITEYVLPRADARPFGIAVDAGNNVWYTDLSGWLGRLDADRARAR*
Ga0079222_106357801	3300006755	Agricultural Soil	SRPFAVAVDAANNVWYTDLSGRLGMLPAAAAKAP*
Ga0066658_101883621	3300006794	Soil	PRSDARPFDVAVDAANNVWYTDLTGWVGTLSAERARAR*
Ga0075421_1016244141	3300006845	Populus Rhizosphere	SGARPFGIAVDGSGNVWYTDLNGGLGRLSAERARGR*
Ga0075433_100215461	3300006852	Populus Rhizosphere	LGRVHAGTITELVLPRVDARPFGIAVDAGNNVWYTDLSGWLGRLDAERARVR*
Ga0075433_113349451	3300006852	Populus Rhizosphere	DARPFGIAVDAAGNIWYTDLSGALGRLSAERARGR*
Ga0075425_1019654621	3300006854	Populus Rhizosphere	PRVDARPFGIAVDAGNNVWYTDLSGWLGRLDAERARVR*
Ga0075434_1005016683	3300006871	Populus Rhizosphere	ARPFGVAVDGAGNVWYTDLSGWLGRLSAERARGR*
Ga0099791_101185033	3300007255	Vadose Zone Soil	RLPRPDARPFGVTVDRANNVWYTDLGGWLGMLRADYATGG*
Ga0099829_103023602	3300009038	Vadose Zone Soil	TEFALPRRDARPFGITVDAGNNVWYTDLSGWLGRLDADRARVR*
Ga0099830_110116181	3300009088	Vadose Zone Soil	HRLGRAHAGAITEFVLPRADARPVGVNVDAGNNVWYTDLSGWLGRLAADRARVR*
Ga0099827_105716611	3300009090	Vadose Zone Soil	ALPRRDARPFGITVDARNNVWYTDLSGWLGRLDADRARVR*
Ga0066709_1002336501	3300009137	Grasslands Soil	ARPFGVAVDRANNVWYTDLGGWLGMLRADRARFG*
Ga0114129_100804491	3300009147	Populus Rhizosphere	HDGVITEFVLPRPDARPFGITVDARNNVWYTDLGGWLGRLGADRARVDGRHDGG*
Ga0114129_105013264	3300009147	Populus Rhizosphere	HDGVITEFVLPRPDARPFGITVDARNNVWYTDLGGWLGRLDADRARVDGRHDGG*
Ga0075423_111722171	3300009162	Populus Rhizosphere	VLPRPDARPFGIAVDAGNNVWYTDLSGWIGRLDADRARVR*
Ga0105242_122376063	3300009176	Miscanthus Rhizosphere	HAGAITEFVLPRGDARPFGIAVDAANNVWYTDLSGWVGRLEADRARVR*
Ga0105248_107811141	3300009177	Switchgrass Rhizosphere	ITEFALPRPDARPFGIAVDARNNVWYTDLSGWIGRLAAERARGG*
Ga0105249_132691781	3300009553	Switchgrass Rhizosphere	ITEYVLPRADARPFGIAVDAGNNVWYTDLSGWLGRLDADRARAR*
Ga0105252_100080131	3300009678	Soil	IKEFALPRPDARPFGITVDGANNVWYSDLSGWLGRLDASRARDR*
Ga0105088_10744732	3300009810	Groundwater Sand	FTELRAHKLGRVRGGVVKEFPLARRDARPFGVAVDAANNVWYTDLSGWLGMLPADRARGN
Ga0134082_105627972	3300010303	Grasslands Soil	RDAARPFGVAVDAANNVWYTDLGGWLGVLPAASATSR*
Ga0134071_107187862	3300010336	Grasslands Soil	GRVRAGEITEYVLPRPDARPFGITVDAGNNVWYTDLGGWLGRLAADRARAR*
Ga0126370_103890891	3300010358	Tropical Forest Soil	ARPFGIAVDGAGNVWYTDLSGWLGRLSAERARAR*
Ga0126376_104752981	3300010359	Tropical Forest Soil	HADARPYSVAVDAAGNIWYTDISGWLGMLPAHRARSQ*
Ga0126372_102333741	3300010360	Tropical Forest Soil	RPDARPIGIAVDAGNNVWYADLSGWLGRLDAGRARVR*
Ga0126372_105923631	3300010360	Tropical Forest Soil	SRPFGVAVDAADNVWYTDLSGWLGMLPASAAQAP*
Ga0126372_129971371	3300010360	Tropical Forest Soil	RSDARPFGIAVDAAGNVWYTDLSGRLGRLSAQRALRR*
Ga0126378_118786081	3300010361	Tropical Forest Soil	FRLPRTERRPFGVAVDAANNVWYTDLSGWLGMLPAIAATGR*
Ga0126379_129519703	3300010366	Tropical Forest Soil	PRPNSRPFGVAVDAANNVWYTDLAGWLGMLPASAAKAP*
Ga0126381_1040611902	3300010376	Tropical Forest Soil	DARPFGIAVDAAGNVWYTDLSGTLGRLSAQRARRR*
Ga0134123_119337672	3300010403	Terrestrial Soil	ARPFSVAVDGEGNVWYTDLHGWLGKLSAERARAR*
Ga0137422_10063662	3300011416	Soil	PDARPFGITVDSANNVWYSDLSGWLGRLDASRARDR*
Ga0137389_110338112	3300012096	Vadose Zone Soil	VRDGIITEFTLPRSDARPFGIAVDARNNVWYTDLSGWIGRLAAERARGG*
Ga0137389_112364121	3300012096	Vadose Zone Soil	GRVAEFRLPRADGRPFGVAVDAANNVWYTDLSGWFGMLPAGRAKAR*
Ga0137388_104937711	3300012189	Vadose Zone Soil	HRLGRLHGGAITEFDLPRPDARPFGITVDAGNNVWYTDLSGWLGRLDAHRARVR*
Ga0137383_103455163	3300012199	Vadose Zone Soil	VMEFRLPRTESRPFGVAVDAANNVWYTDLSGWLGMLPAVRAKAP*
Ga0137363_111320091	3300012202	Vadose Zone Soil	IITEFALPRPDARPFGIAVDARNNVWYTDLSGWIGRLAAERARGG*
Ga0137362_110797271	3300012205	Vadose Zone Soil	GRVRDGIITEFALPRPDARPFGIAVDARNNVWYTDLSGWIGRLAAERARGG*
Ga0137381_100530932	3300012207	Vadose Zone Soil	VRDGVITEFALPRGDARPFGITVDASNNVWYTDLSGWLGRLAADRARGR*
Ga0137387_105095931	3300012349	Vadose Zone Soil	ADSRPFGVMVDKANNVWYTDLSGWLGMLPAVAAQAP*
Ga0137372_103622071	3300012350	Vadose Zone Soil	ISRLHGGAITEFALPRRDARPFGITVDAGNNVWYTDLSGWLGRLDADRARVR*
Ga0137385_110092142	3300012359	Vadose Zone Soil	RDGVITEFALPRGDARPFGIAVDASNNVWYTDLSGWLGRLAADRARGR*
Ga0137375_113117661	3300012360	Vadose Zone Soil	DARPFGITVDASNNVWYTDLSGWLGRLAADRARGR*
Ga0137358_107039902	3300012582	Vadose Zone Soil	FVLPRADARPFGITVDAGNTVWYTDLSGWLGRLDASHARTRERR*
Ga0137396_102332833	3300012918	Vadose Zone Soil	RRDARPFGVAVDRANNVWYTDLGGWLGMLRAAQATSR*
Ga0137416_106530002	3300012927	Vadose Zone Soil	ARPFGVAVDAANNVWYTDLSGWLGMLPAASATSR*
Ga0137404_113698501	3300012929	Vadose Zone Soil	ARPFGITVDASNNVWYTDLSGWLGRLAADRARGR*
Ga0163162_128827711	3300013306	Switchgrass Rhizosphere	RGDARPFGITVDASNNVWYTDLSGWLGRLSADRARGR*
Ga0163163_129939111	3300014325	Switchgrass Rhizosphere	ALPRRDARPFGVAVDGANNVWYTDLSGWLGMVRGERARAE*
Ga0134073_102357241	3300015356	Grasslands Soil	SRPFGVAVDAANNVWYTDLSGSLGMLPAARAKAP*
Ga0132257_1004562241	3300015373	Arabidopsis Rhizosphere	ARPFGVAVDAANNVWYTDRSGWLGRLDADRARVR*
Ga0182035_103415641	3300016341	Soil	FRLPRADGRPFGVGTDAANNVWYTDLTGWLGMLPAGRARAP
Ga0182032_106717941	3300016357	Soil	LPQSDARPFGIAVDGAGNVWYTDLSGRLGRLSAEQARGR
Ga0182037_106420842	3300016404	Soil	VAEFRLPRADGRPFAVAVDRANNVWYTDLSGWLGMLPAGRAKAP
Ga0182037_115699492	3300016404	Soil	RDGRITEFRLPRADGRPFGVGTDAANNVWYTDLTGWLGMLPAGRARAP
Ga0182038_105364352	3300016445	Soil	RLPRADGRPFGVGTDAANNVWYTDLTGWLGMLPAGRARAP
Ga0134074_10701791	3300017657	Grasslands Soil	ITEYVLPRSDARPFGITVDAGNNVWYTDLSGWLGRLDADRARVR
Ga0066667_120071981	3300018433	Grasslands Soil	SDARPFGITVDAGNNVWYTDLSGWLGRLDADRARAR
Ga0210381_104114861	3300021078	Groundwater Sediment	HRLGRVQATTIREFVLPRDDARPFGIAVDAGNNVWYTDLSGWVGRLDAKRARAR
Ga0210409_109443762	3300021559	Soil	PRSDARPFGIAVDAAANVWYTDLSGALGRLSAQRARSR
Ga0126371_118562291	3300021560	Tropical Forest Soil	VQEFALPRRDARPFGVAIDRANNVWYTDLSGWIGRLAAERARGR
Ga0207710_104854561	3300025900	Switchgrass Rhizosphere	RGGRVKEFALPRRDARPFGVAVDGANNVWYTDLSGWLGMVRGERARAE
Ga0207684_113675021	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	DGRVTEFRLPRADARPFGVAVDRANNVWYTDLGGWLGMLRAASATSR
Ga0207701_111211331	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	PLPRSDARPFGIAVDGSGNVWFTDLSGGLGRLSAERTRGR
Ga0209236_10913721	3300026298	Grasslands Soil	VLPRSDARPFGITVDAANNVWYTDLSGWVGRLDASRAQIR
Ga0209761_10379001	3300026313	Grasslands Soil	AGAITEFVLPRADARPFGVNVDAGNNVWYTDLSGWLGRLAADRARVR
Ga0209471_11516192	3300026318	Soil	MAEFPLPRSDARPFDVAVDAANNVWYTDLSGWLGRLSAERARVR
Ga0209470_13358652	3300026324	Soil	KLGRVRDGVITEFALPRGDARPFGITVDASNNVWYTDLSGWLGRLDADRARVR
Ga0209801_11715462	3300026326	Soil	GGVTEFVLPRSDARPFGITVDADNNVWYTDLSGWLGRLDADRARAR
Ga0209056_100700264	3300026538	Soil	DGRVTEFRLPRADARPFGVAVDRANNVWYTDLGGWLGMLRAAQATSR
Ga0209684_10136071	3300027527	Tropical Forest Soil	SDARPFGIAVDDAGNVWYTDLSGRLGRLSAEQARGR
Ga0209388_10582802	3300027655	Vadose Zone Soil	VLPRPDARPFGITVDAGNNVWYTDLGGWLGRLAADRARAR
Ga0209283_102233591	3300027875	Vadose Zone Soil	GRVRDGIITEFTLPRSDARPFGIAVDARNNVWYTDLSGWIGRLAAERARGG
Ga0209590_107748923	3300027882	Vadose Zone Soil	ALPRRDARPFGITVDARNNVWYTDLSGWLGRLDADRARVR
Ga0268264_121655871	3300028381	Switchgrass Rhizosphere	YVLPRADARPFGIAVDAGNNVWYTDLSGWLGRLDADRARAR
Ga0137415_110066752	3300028536	Vadose Zone Soil	RLRDGTITEFELPRPDARPFGITVDGANNVWYSDLSGWLGRLDAGPARGR
Ga0247828_101558622	3300028587	Soil	NAPEAITEFALPRAEARPFGIAVDAGNNVWYTDLSGWLGRLDAERARVR
Ga0247826_100087435	3300030336	Soil	HAGAITEFALPRAEARPFGIAVDAGNNVWYTDLSGWLGRLDAERARVR
Ga0307498_101118831	3300031170	Soil	GTIKEFALPRPDARPFGITVDGANNVWYSDLSGWLGRLDASRARDR
Ga0318528_101258842	3300031561	Soil	TEFRLPRADGRPFGVGTDAANNVWYTDLTGWLGMLPAGRARAP
Ga0307469_107034082	3300031720	Hardwood Forest Soil	LPRPDARPFGITVDAGNNVWYTDLSGWLGRLDADRARIR
Ga0307469_112109722	3300031720	Hardwood Forest Soil	GRVRDGRVTEFRLPRPDARPFGIAVDRANNVWYTDLSGWLGMLRAGHARSR
Ga0307469_119921002	3300031720	Hardwood Forest Soil	DGVITEFALPRGDARPFGITVDASNNVWYTDLSGWLGRLSADRARGR
Ga0307469_123460022	3300031720	Hardwood Forest Soil	RVRDGIVREFPLPRRDARPFGVAVDRANNVWYTDLSGWLGMFRADRARNE
Ga0318493_101791512	3300031723	Soil	PQSDARPFGIAVDGAGNVWYTDLSGRLGRLSAEQARGG
Ga0307468_1001678231	3300031740	Hardwood Forest Soil	LPRPDARPFGIAVDVGNNVWYTDLSGWIGRLDADRARVR
Ga0306918_103030971	3300031744	Soil	RVAEFRLPRADGRPFAVAVDRANNVWYTDLSGWLAMLPAVRAKAP
Ga0318502_102136852	3300031747	Soil	RLPRPDGRPFAVAVDRANNVWYTDLSGWLAMLPAVRAKAP
Ga0318546_101816113	3300031771	Soil	ERHPFGVAVDAANNVWYTDLSGWLGMLPASAAETP
Ga0318548_106011881	3300031793	Soil	DGRPFAVAVDRANNVWYTDLSGWLAMLPAVRAKAP
Ga0318576_103353091	3300031796	Soil	GKVAEFRLPRTERRPFGVAVDAANNVWYTDLSGWLGMLPASAAETP
Ga0310884_101132811	3300031944	Soil	AGAITEFALPRAEARPFGIAVDAGNNVWYTDLSGWLGRLDAERARVR
Ga0306922_104562531	3300032001	Soil	GRVAEFRLPRADGRPFAVAVDRANNVWYTDLSGWLAMLPAVRAKAP
Ga0310899_104077212	3300032017	Soil	SLGRVHAGAITEFALPRAEARPFGIAVDAGNNVWYTDLSGWLGRLDAERARGR
Ga0318513_103552331	3300032065	Soil	SLPRASARPFGVTVDSANNVWYTDLSGWLGMLPATVAKAP
Ga0306924_115058832	3300032076	Soil	AEFRLPRTERRPFGVAVDAANNVWYTDLSGWLGMLPASAAKAP
Ga0318540_101951891	3300032094	Soil	PRPGSRPFAVAVDPSNNVWYTDLSGWLGMLPAAQAKAP
Ga0307471_1012624482	3300032180	Hardwood Forest Soil	GHKLGRVHAGRITEFVLPRAEARPFGIAVDAANNVWYTDLSGWLGRLDADRARVR
Ga0335077_120115182	3300033158	Soil	PDARPFGIAVDDGGNVWFTDLTGRLGRLSAQRARGW
Ga0364945_0218309_3_185	3300034115	Sediment	FTETRAQKLGRVRGGVIKEFALPRRDARPFGVAVDEANNVWYTDLSGWLGMLGSDRARAE

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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