Metagenome / Metatranscriptome Family F071301

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F071301
Family Type	Metagenome / Metatranscriptome
Number of Sequences	122
Average Sequence Length	50 residues
Representative Sequence	MNSLSKIFEPSKERLINNARTMMLTAQDPWFKSYWEKVYKHLLKVYGRLN
Number of Associated Samples	103
Number of Associated Scaffolds	122

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	77.59 %
% of genes near scaffold ends (potentially truncated)	31.97 %
% of genes from short scaffolds (< 2000 bps)	46.72 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.67

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (63.934 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine (36.066 % of family members)
Environment Ontology (ENVO)	Unclassified (62.295 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (94.262 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 44.87% β-sheet: 0.00% Coil/Unstructured: 55.13%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.67
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.67
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 122 Family Scaffolds
PF02675	AdoMet_dc	16.39
PF00012	HSP70	13.11
PF00118	Cpn60_TCP1	6.56
PF00155	Aminotran_1_2	3.28
PF02622	DUF179	3.28
PF04304	DUF454	2.46
PF01555	N6_N4_Mtase	0.82
PF04773	FecR	0.82
PF13640	2OG-FeII_Oxy_3	0.82
PF01832	Glucosaminidase	0.82
PF01883	FeS_assembly_P	0.82
PF03783	CsgG	0.82
PF01176	eIF-1a	0.82
PF13759	2OG-FeII_Oxy_5	0.82

COG ID	Name	Functional Category	% Frequency in 122 Family Scaffolds
COG1586	S-adenosylmethionine decarboxylase	Amino acid transport and metabolism [E]	16.39
COG0443	Molecular chaperone DnaK (HSP70)	Posttranslational modification, protein turnover, chaperones [O]	13.11
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	6.56
COG1678	Putative transcriptional regulator, AlgH/UPF0301 family	Transcription [K]	3.28
COG2832	Uncharacterized membrane protein YbaN, DUF454 family	Function unknown [S]	2.46
COG0361	Translation initiation factor IF-1	Translation, ribosomal structure and biogenesis [J]	0.82
COG0863	DNA modification methylase	Replication, recombination and repair [L]	0.82
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	0.82
COG1462	Curli biogenesis system outer membrane secretion channel CsgG	Cell wall/membrane/envelope biogenesis [M]	0.82
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	0.82

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.93 %
All Organisms	root	All Organisms	36.07 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.93 %
cellular organisms	root	All Organisms → cellular organisms	20.49 %
Viruses	superkingdom	All Organisms → Viruses	15.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.93 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	16.39 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.93 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	3.28 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	0.82 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	9.84 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	3.28 %
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	0.82 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	8.20 %
unclassified Euryarchaeota	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota	3.28 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	0.82 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.82 %
Alveolata	clade	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.93 %
Rickettsiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales	6.56 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	3.28 %
Dinophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	0.82 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.82 %
Pelagibacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	0.82 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.93 %
unclassified Rickettsiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales	6.56 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	3.28 %
Betaproteobacteria bacterium TMED41	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	0.82 %
Pelagibacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae	0.82 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	0.82 %
Syndiniales	order	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Syndiniales	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.93 %
Rickettsiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	6.56 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	3.28 %
Candidatus Pelagibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	0.82 %
Myoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	0.82 %
Amoebophryaceae	family	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Syndiniales → Amoebophryaceae	0.82 %
Betaproteobacteria bacterium TMED41	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.93 %
Rickettsiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	6.56 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	3.28 %
unclassified Candidatus Pelagibacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter	0.82 %
Amoebophrya	genus	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Syndiniales → Amoebophryaceae → Amoebophrya	0.82 %
unclassified Myoviridae	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae	0.82 %
Betaproteobacteria bacterium TMED41	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.93 %
Rickettsiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	6.56 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	3.28 %
Candidatus Pelagibacter sp. TMED273	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED273	0.82 %
unclassified Amoebophrya	no rank	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Syndiniales → Amoebophryaceae → Amoebophrya → unclassified Amoebophrya	0.82 %
Pelagibacter phage HTVC008M	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae → Pelagibacter phage HTVC008M	0.82 %
Betaproteobacteria bacterium TMED41	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.93 %
Rickettsiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	6.56 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	3.28 %
Amoebophrya sp. A120	species	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Syndiniales → Amoebophryaceae → Amoebophrya → unclassified Amoebophrya → Amoebophrya sp. A120	0.82 %
Candidatus Pelagibacter sp. TMED273	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED273	0.82 %
Pelagibacter phage HTVC008M	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae → Pelagibacter phage HTVC008M	0.82 %
Betaproteobacteria bacterium TMED41	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	0.82 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001344\|JGI20152J14361_10020536	Not Available	2437	Open in IMG/M
3300001349\|JGI20160J14292_10087747	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1165	Open in IMG/M
3300001460\|JGI24003J15210_10000426	Not Available	18165	Open in IMG/M
3300001748\|JGI11772J19994_1036759	Not Available	618	Open in IMG/M
3300001832\|ACM6_1012741	Not Available	892	Open in IMG/M
3300003477\|nap3_10041566	All Organisms → Viruses → Predicted Viral	1025	Open in IMG/M
3300003580\|JGI26260J51721_1011535	All Organisms → Viruses → Predicted Viral	2251	Open in IMG/M
3300005432\|Ga0066845_10014353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	2752	Open in IMG/M
3300005433\|Ga0066830_10124297	Not Available	555	Open in IMG/M
3300005510\|Ga0066825_10004205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	4659	Open in IMG/M
3300005738\|Ga0076926_112929	All Organisms → cellular organisms → Bacteria	10218	Open in IMG/M
3300005837\|Ga0078893_10085986	Not Available	5977	Open in IMG/M
3300005837\|Ga0078893_10103625	Not Available	2789	Open in IMG/M
3300005837\|Ga0078893_10121852	All Organisms → Viruses → Predicted Viral	2273	Open in IMG/M
3300005837\|Ga0078893_10171845	Not Available	752	Open in IMG/M
3300005837\|Ga0078893_10993369	Not Available	548	Open in IMG/M
3300005912\|Ga0075109_1000397	Not Available	30609	Open in IMG/M
3300005960\|Ga0066364_10000614	Not Available	8641	Open in IMG/M
3300005960\|Ga0066364_10005992	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Syndiniales → Amoebophryaceae → Amoebophrya → unclassified Amoebophrya → Amoebophrya sp. A120	3489	Open in IMG/M
3300005960\|Ga0066364_10044226	Not Available	1430	Open in IMG/M
3300006025\|Ga0075474_10022466	Not Available	2274	Open in IMG/M
3300006334\|Ga0099675_1758848	Not Available	578	Open in IMG/M
3300006337\|Ga0068495_1091374	Not Available	829	Open in IMG/M
3300006735\|Ga0098038_1216944	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	614	Open in IMG/M
3300006737\|Ga0098037_1039972	Not Available	1711	Open in IMG/M
3300006737\|Ga0098037_1201493	Not Available	651	Open in IMG/M
3300006867\|Ga0075476_10007890	All Organisms → cellular organisms → Bacteria → Proteobacteria	4859	Open in IMG/M
3300006868\|Ga0075481_10053723	Not Available	1538	Open in IMG/M
3300006868\|Ga0075481_10330187	Not Available	529	Open in IMG/M
3300007114\|Ga0101668_1028840	Not Available	1102	Open in IMG/M
3300009000\|Ga0102960_1007409	Not Available	4189	Open in IMG/M
3300009409\|Ga0114993_10416086	All Organisms → Viruses → Predicted Viral	1008	Open in IMG/M
3300009476\|Ga0115555_1098706	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1256	Open in IMG/M
3300012920\|Ga0160423_10344606	All Organisms → Viruses → Predicted Viral	1022	Open in IMG/M
3300012936\|Ga0163109_10069533	Not Available	2579	Open in IMG/M
3300016747\|Ga0182078_10225478	All Organisms → Viruses → Predicted Viral	2237	Open in IMG/M
3300017697\|Ga0180120_10020254	All Organisms → Viruses → Predicted Viral	3117	Open in IMG/M
3300017733\|Ga0181426_1001024	Not Available	5505	Open in IMG/M
3300017744\|Ga0181397_1001205	Not Available	9478	Open in IMG/M
3300017755\|Ga0181411_1216429	Not Available	534	Open in IMG/M
3300017756\|Ga0181382_1037670	Not Available	1436	Open in IMG/M
3300017765\|Ga0181413_1000435	Not Available	13053	Open in IMG/M
3300017769\|Ga0187221_1057296	All Organisms → Viruses → Predicted Viral	1241	Open in IMG/M
3300017769\|Ga0187221_1060050	Not Available	1206	Open in IMG/M
3300017949\|Ga0181584_10213953	Not Available	1262	Open in IMG/M
3300017962\|Ga0181581_10002757	Not Available	13769	Open in IMG/M
3300017967\|Ga0181590_10740135	Not Available	659	Open in IMG/M
3300018416\|Ga0181553_10331428	Not Available	840	Open in IMG/M
3300018417\|Ga0181558_10031597	All Organisms → Viruses → Predicted Viral	3773	Open in IMG/M
3300020056\|Ga0181574_10352419	Not Available	875	Open in IMG/M
3300020174\|Ga0181603_10032437	Not Available	2886	Open in IMG/M
3300020175\|Ga0206124_10027915	Not Available	2676	Open in IMG/M
3300020247\|Ga0211654_1052495	Not Available	619	Open in IMG/M
3300020248\|Ga0211584_1037215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	750	Open in IMG/M
3300020257\|Ga0211704_1033658	Not Available	753	Open in IMG/M
3300020264\|Ga0211526_1001308	All Organisms → Viruses → Predicted Viral	4499	Open in IMG/M
3300020267\|Ga0211648_1001922	Not Available	6552	Open in IMG/M
3300020267\|Ga0211648_1105715	Not Available	515	Open in IMG/M
3300020278\|Ga0211606_1001526	Not Available	9280	Open in IMG/M
3300020278\|Ga0211606_1071466	Not Available	682	Open in IMG/M
3300020280\|Ga0211591_1004151	All Organisms → cellular organisms → Bacteria	3502	Open in IMG/M
3300020283\|Ga0211482_1004695	All Organisms → Viruses → Predicted Viral	1639	Open in IMG/M
3300020288\|Ga0211619_1004327	All Organisms → cellular organisms → Bacteria	2654	Open in IMG/M
3300020294\|Ga0211520_1004267	All Organisms → cellular organisms → Bacteria	2475	Open in IMG/M
3300020296\|Ga0211474_1003940	Not Available	3258	Open in IMG/M
3300020301\|Ga0211650_1005959	Not Available	2360	Open in IMG/M
3300020305\|Ga0211513_1000149	Not Available	11490	Open in IMG/M
3300020336\|Ga0211510_1015731	All Organisms → cellular organisms → Bacteria	2019	Open in IMG/M
3300020337\|Ga0211508_1043655	All Organisms → cellular organisms → Bacteria	1063	Open in IMG/M
3300020340\|Ga0211594_1028418	Not Available	1218	Open in IMG/M
3300020345\|Ga0211706_1105735	Not Available	565	Open in IMG/M
3300020348\|Ga0211600_1080238	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	749	Open in IMG/M
3300020367\|Ga0211703_10182606	Not Available	548	Open in IMG/M
3300020368\|Ga0211674_10008573	All Organisms → Viruses → Predicted Viral	3304	Open in IMG/M
3300020371\|Ga0211500_1101869	Not Available	854	Open in IMG/M
3300020378\|Ga0211527_10065965	Not Available	1098	Open in IMG/M
3300020380\|Ga0211498_10017533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2626	Open in IMG/M
3300020401\|Ga0211617_10005033	All Organisms → cellular organisms → Bacteria	6122	Open in IMG/M
3300020403\|Ga0211532_10011639	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED273	5405	Open in IMG/M
3300020404\|Ga0211659_10192429	Not Available	917	Open in IMG/M
3300020406\|Ga0211668_10396255	Not Available	516	Open in IMG/M
3300020411\|Ga0211587_10253250	Not Available	729	Open in IMG/M
3300020433\|Ga0211565_10042410	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	1937	Open in IMG/M
3300020433\|Ga0211565_10134946	Not Available	1069	Open in IMG/M
3300020433\|Ga0211565_10410428	Not Available	591	Open in IMG/M
3300020438\|Ga0211576_10001831	Not Available	15809	Open in IMG/M
3300020438\|Ga0211576_10002061	Not Available	14823	Open in IMG/M
3300020440\|Ga0211518_10057343	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	2201	Open in IMG/M
3300020445\|Ga0211564_10003552	Not Available	7833	Open in IMG/M
3300020448\|Ga0211638_10016844	Not Available	3082	Open in IMG/M
3300020457\|Ga0211643_10019890	All Organisms → cellular organisms → Bacteria	3459	Open in IMG/M
3300020461\|Ga0211535_10433607	Not Available	598	Open in IMG/M
3300020469\|Ga0211577_10015889	Not Available	6032	Open in IMG/M
3300020475\|Ga0211541_10214905	Not Available	944	Open in IMG/M
3300021364\|Ga0213859_10009863	Not Available	4319	Open in IMG/M
3300021365\|Ga0206123_10003662	Not Available	12570	Open in IMG/M
3300021368\|Ga0213860_10008767	Not Available	4132	Open in IMG/M
3300021958\|Ga0222718_10027416	All Organisms → Viruses → Predicted Viral	3858	Open in IMG/M
3300021958\|Ga0222718_10051242	Not Available	2620	Open in IMG/M
3300021959\|Ga0222716_10028640	All Organisms → Viruses → Predicted Viral	4079	Open in IMG/M
3300021959\|Ga0222716_10041460	All Organisms → Viruses → Predicted Viral	3305	Open in IMG/M
3300021959\|Ga0222716_10065839	Not Available	2528	Open in IMG/M
3300021960\|Ga0222715_10029371	Not Available	3978	Open in IMG/M
3300022825\|Ga0222669_1001792	Not Available	5400	Open in IMG/M
3300022865\|Ga0222668_1005568	All Organisms → Viruses → Predicted Viral	3319	Open in IMG/M
3300022929\|Ga0255752_10342202	Not Available	614	Open in IMG/M
3300024346\|Ga0244775_11085581	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	628	Open in IMG/M
3300025086\|Ga0208157_1092613	Not Available	737	Open in IMG/M
3300025610\|Ga0208149_1045687	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41	1148	Open in IMG/M
3300025694\|Ga0209406_1158091	All Organisms → Viruses	712	Open in IMG/M
3300026081\|Ga0208390_1000752	Not Available	11726	Open in IMG/M
3300026081\|Ga0208390_1015746	All Organisms → Viruses → Predicted Viral	2269	Open in IMG/M
3300026201\|Ga0208127_1027922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	1868	Open in IMG/M
3300027906\|Ga0209404_10073877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	1971	Open in IMG/M
3300031596\|Ga0302134_10184210	Not Available	853	Open in IMG/M
3300031774\|Ga0315331_10693653	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae → Pelagibacter phage HTVC008M	720	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	95.90%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	4.10%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Unclassified	42.62%
Oceanic	Environmental → Aquatic → Marine → Oceanic	18.85%
Coastal	Environmental → Aquatic → Marine → Coastal	11.48%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	10.66%
Strait	Environmental → Aquatic → Marine → Strait	5.74%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	4.10%
Pelagic	Environmental → Aquatic → Marine → Pelagic	3.28%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	2.46%
Volcanic	Environmental → Aquatic → Marine → Volcanic	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	42.62%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	15.57%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	11.48%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	8.20%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	5.74%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	3.28%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	3.28%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	3.28%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	2.46%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	2.46%
Unclassified	Environmental → Aquatic → Marine → Volcanic → Unclassified	0.82%
Epilimnion	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion	0.82%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	36.07%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	14.75%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	8.20%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	5.74%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	4.92%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	4.92%
Marine Surface Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water	4.10%
Marine	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine	1.64%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	1.64%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	1.64%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	1.64%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	1.64%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	1.64%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	1.64%
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	1.64%
Marine Plankton	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton	0.82%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.82%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	0.82%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	0.82%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	0.82%
Estuarine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Estuarine	0.82%
Volcanic Co2 Seep Seawater	Environmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seep Seawater	0.82%
Saline Lake	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake	0.82%
Pond Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water	0.82%
Saline Water And Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment	0.82%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001344	Pelagic Microbial community sample from North Sea - COGITO 998_met_02	Environmental	Open in IMG/M
3300001349	Pelagic Microbial community sample from North Sea - COGITO 998_met_10	Environmental	Open in IMG/M
3300001460	Marine viral communities from the Pacific Ocean - LP-28	Environmental	Open in IMG/M
3300001748	Saline surface water microbial communities from Etoliko Lagoon, Greece - surface water (0 m)	Environmental	Open in IMG/M
3300001832	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM6, ROCA_DNA131_0.2um_27b	Environmental	Open in IMG/M
3300003477	Estuarine microbial communities from the Sarno estuary, Gulf of Naples, Italy - Sample Station 3	Environmental	Open in IMG/M
3300003580	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNA	Environmental	Open in IMG/M
3300005432	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV78	Environmental	Open in IMG/M
3300005433	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF45B	Environmental	Open in IMG/M
3300005510	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV45	Environmental	Open in IMG/M
3300005738	Seawater microbial communities from Vineyard Sound, MA, USA - sterilised with crude oil T0	Environmental	Open in IMG/M
3300005837	Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18	Environmental	Open in IMG/M
3300005912	Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKD	Environmental	Open in IMG/M
3300005960	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_SurfaceA_ad_6m_LV_A	Environmental	Open in IMG/M
3300005971	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_SurfaceA_ad_5m_LV_A	Environmental	Open in IMG/M
3300006025	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA	Environmental	Open in IMG/M
3300006334	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0025m	Environmental	Open in IMG/M
3300006337	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT237_3_0025m	Environmental	Open in IMG/M
3300006735	Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG	Environmental	Open in IMG/M
3300006737	Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG	Environmental	Open in IMG/M
3300006867	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNA	Environmental	Open in IMG/M
3300006868	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA	Environmental	Open in IMG/M
3300007114	Seawater microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'bubble', waterEBis4	Environmental	Open in IMG/M
3300009000	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MG	Environmental	Open in IMG/M
3300009409	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150	Environmental	Open in IMG/M
3300009476	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110407	Environmental	Open in IMG/M
3300012920	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG	Environmental	Open in IMG/M
3300012936	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaG	Environmental	Open in IMG/M
3300016747	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071409BT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017697	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)	Environmental	Open in IMG/M
3300017733	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 49 SPOT_SRF_2013-12-23	Environmental	Open in IMG/M
3300017744	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 20 SPOT_SRF_2011-02-23	Environmental	Open in IMG/M
3300017755	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 34 SPOT_SRF_2012-07-09	Environmental	Open in IMG/M
3300017756	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 5 SPOT_SRF_2009-10-22	Environmental	Open in IMG/M
3300017765	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 36 SPOT_SRF_2012-09-28	Environmental	Open in IMG/M
3300017769	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 5 SPOT_SRF_2009-10-22 (version 2)	Environmental	Open in IMG/M
3300017949	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017962	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071404AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017967	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018416	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018417	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011507BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300020056	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101410AT metaG (spades assembly)	Environmental	Open in IMG/M
3300020174	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041409US metaG (spades assembly)	Environmental	Open in IMG/M
3300020175	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160321_2	Environmental	Open in IMG/M
3300020247	Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556048-ERR598962)	Environmental	Open in IMG/M
3300020248	Marine microbial communities from Tara Oceans - TARA_B100000123 (ERX556118-ERR599141)	Environmental	Open in IMG/M
3300020257	Marine microbial communities from Tara Oceans - TARA_B100000508 (ERX555911-ERR599048)	Environmental	Open in IMG/M
3300020264	Marine microbial communities from Tara Oceans - TARA_B100000066 (ERX556116-ERR599158)	Environmental	Open in IMG/M
3300020267	Marine microbial communities from Tara Oceans - TARA_B100000927 (ERX556026-ERR599108)	Environmental	Open in IMG/M
3300020269	Marine microbial communities from Tara Oceans - TARA_A100001035 (ERX556080-ERR599041)	Environmental	Open in IMG/M
3300020278	Marine microbial communities from Tara Oceans - TARA_B100000674 (ERX556076-ERR599151)	Environmental	Open in IMG/M
3300020280	Marine microbial communities from Tara Oceans - TARA_B100001121 (ERX556044-ERR599114)	Environmental	Open in IMG/M
3300020283	Marine microbial communities from Tara Oceans - TARA_A100001035 (ERX556066-ERR599155)	Environmental	Open in IMG/M
3300020288	Marine microbial communities from Tara Oceans - TARA_B100000161 (ERX556132-ERR599045)	Environmental	Open in IMG/M
3300020294	Marine microbial communities from Tara Oceans - TARA_E500000331 (ERX556124-ERR599153)	Environmental	Open in IMG/M
3300020296	Marine microbial communities from Tara Oceans - TARA_A100000164 (ERX556002-ERR599140)	Environmental	Open in IMG/M
3300020301	Marine microbial communities from Tara Oceans - TARA_B100000925 (ERX556086-ERR598997)	Environmental	Open in IMG/M
3300020305	Marine microbial communities from Tara Oceans - TARA_X000000263 (ERX556024-ERR599003)	Environmental	Open in IMG/M
3300020336	Marine microbial communities from Tara Oceans - TARA_E500000081 (ERX289008-ERR315860)	Environmental	Open in IMG/M
3300020337	Marine microbial communities from Tara Oceans - TARA_E500000075 (ERX289009-ERR315861)	Environmental	Open in IMG/M
3300020340	Marine microbial communities from Tara Oceans - TARA_B100001121 (ERX555960-ERR599119)	Environmental	Open in IMG/M
3300020345	Marine microbial communities from Tara Oceans - TARA_B100000427 (ERX556079-ERR599137)	Environmental	Open in IMG/M
3300020348	Marine microbial communities from Tara Oceans - TARA_B100000676 (ERX556089-ERR599161)	Environmental	Open in IMG/M
3300020367	Marine microbial communities from Tara Oceans - TARA_B100000508 (ERX556112-ERR599005)	Environmental	Open in IMG/M
3300020368	Marine microbial communities from Tara Oceans - TARA_B100001027 (ERX556049-ERR599093)	Environmental	Open in IMG/M
3300020371	Marine microbial communities from Tara Oceans - TARA_B100000003 (ERX555978-ERR598991)	Environmental	Open in IMG/M
3300020378	Marine microbial communities from Tara Oceans - TARA_B100000066 (ERX556006-ERR599102)	Environmental	Open in IMG/M
3300020380	Marine microbial communities from Tara Oceans - TARA_B000000565 (ERX555945-ERR599058)	Environmental	Open in IMG/M
3300020397	Marine microbial communities from Tara Oceans - TARA_B100000123 (ERX556052-ERR599075)	Environmental	Open in IMG/M
3300020401	Marine microbial communities from Tara Oceans - TARA_B100000212 (ERX555985-ERR599139)	Environmental	Open in IMG/M
3300020403	Marine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145)	Environmental	Open in IMG/M
3300020404	Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)	Environmental	Open in IMG/M
3300020406	Marine microbial communities from Tara Oceans - TARA_B100000886 (ERX555926-ERR599024)	Environmental	Open in IMG/M
3300020411	Marine microbial communities from Tara Oceans - TARA_B100000131 (ERX556098-ERR599130)	Environmental	Open in IMG/M
3300020433	Marine microbial communities from Tara Oceans - TARA_B100001989 (ERX556106-ERR599030)	Environmental	Open in IMG/M
3300020438	Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)	Environmental	Open in IMG/M
3300020440	Marine microbial communities from Tara Oceans - TARA_E500000178 (ERX555952-ERR599043)	Environmental	Open in IMG/M
3300020445	Marine microbial communities from Tara Oceans - TARA_B100001996 (ERX555961-ERR599087)	Environmental	Open in IMG/M
3300020448	Marine microbial communities from Tara Oceans - TARA_B100000941 (ERX555919-ERR598954)	Environmental	Open in IMG/M
3300020457	Marine microbial communities from Tara Oceans - TARA_B100001113 (ERX555941-ERR599014)	Environmental	Open in IMG/M
3300020461	Marine microbial communities from Tara Oceans - TARA_B100000401 (ERX556127-ERR599150)	Environmental	Open in IMG/M
3300020469	Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)	Environmental	Open in IMG/M
3300020475	Marine microbial communities from Tara Oceans - TARA_B100002029 (ERX555951-ERR599001)	Environmental	Open in IMG/M
3300021364	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304	Environmental	Open in IMG/M
3300021365	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160316_1	Environmental	Open in IMG/M
3300021368	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550	Environmental	Open in IMG/M
3300021958	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D	Environmental	Open in IMG/M
3300021959	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D	Environmental	Open in IMG/M
3300021960	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D	Environmental	Open in IMG/M
3300022825	Saline water microbial communities from Ace Lake, Antarctica - #730	Environmental	Open in IMG/M
3300022865	Saline water microbial communities from Ace Lake, Antarctica - #728	Environmental	Open in IMG/M
3300022929	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG	Environmental	Open in IMG/M
3300023173	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071413AT metaG	Environmental	Open in IMG/M
3300024346	Whole water sample coassembly	Environmental	Open in IMG/M
3300025086	Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)	Environmental	Open in IMG/M
3300025610	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025694	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120426 (SPAdes)	Environmental	Open in IMG/M
3300025701	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_DNA (SPAdes)	Environmental	Open in IMG/M
3300026081	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_SurfaceA_ad_6m_LV_A (SPAdes)	Environmental	Open in IMG/M
3300026201	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV45 (SPAdes)	Environmental	Open in IMG/M
3300027906	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)	Environmental	Open in IMG/M
3300031596	Marine microbial communities from Western Arctic Ocean, Canada - CB9_SCM	Environmental	Open in IMG/M
3300031774	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI20152J14361_100205369	3300001344	Pelagic Marine	MNRLAKMFEPSKDRLINNARTMMQTAHDPWFKSYWEKVYKHLLKEYGRLN*
JGI20160J14292_100877475	3300001349	Pelagic Marine	MNRLAKMFEPSKDRLINNARTMMQTAHDPWFKSYWEKVYKHLLKEYG
JGI24003J15210_1000042631	3300001460	Marine	MNRLAKMFEPSKERLINNARTMMQTAHDPWFKSYWEKVYKHLLKEYGRLN*
JGI11772J19994_10367594	3300001748	Saline Water And Sediment	MSSLSKIFEPSKDRLIRNARNCMNSAQDPWFRAYWEKVLNH
ACM6_10127413	3300001832	Marine Plankton	MKDLIDPSVWTKMFEPSKERLIKNARTMMLNAQDPWFKKYWEKVYKHLLKVYGRLN*
nap3_100415663	3300003477	Estuarine	MSNQLTKMFEPSKDRLIRNARTSMMNAQDPWFKAYWEKVLKHLLKVYGRLN*
JGI26260J51721_10115357	3300003580	Marine	MNNLSKMFEPSKERLIRNARNSMLSAQDPWFKSYWEGVLNHLLTVYKRHD*
Ga0066845_100143537	3300005432	Marine	MKNLIDPDVLTKMFEPSKERLIKNARTMMLNAQDPWFKSYWEKVYKHLLKVYGRLN*
Ga0066830_101242972	3300005433	Marine	MNSLSKIFEPSKERLINNARTMMLTAQDPWFKSYWEKVYKHLLKVYGRLN*
Ga0066825_1000420510	3300005510	Marine	MKNLINPDVLTKMFEPSKERLIKNARTMMLNAQDPWFKSYWEKVYQHLLKAYGRLN*
Ga0076926_1129296	3300005738	Marine	MNNLSKMFEPSKERLIRNARNSMLSAQDPWFRSYWEKVLNHLLKVYKRYD*
Ga0078893_100859869	3300005837	Marine Surface Water	MYSQLTKMFEPSKERLIRNARTSMMNAQDPWFKAYWEKVLKHLLKVYGRLN*
Ga0078893_1010362510	3300005837	Marine Surface Water	MNSLSKIFEPSKDRLIKNARTMMLTAQDPWFKSYWEKVYKHLLKVYGRLN*
Ga0078893_101218526	3300005837	Marine Surface Water	MNDLIEPSVWTKMYEPSKERLIKNAERMMQNAQDPWFKSYWEKVYQHLLKVYGRLN*
Ga0078893_101718453	3300005837	Marine Surface Water	MNRLAKIFEPSKERLMNNARTMMLSAQDPWFKSYWEKVYKHLLKEYGRLT*
Ga0078893_109933692	3300005837	Marine Surface Water	MNDLFEPSVWTKMYEPSKERLIKNAERMMQSAQDPWFKSYWEKVYTHLLKVYGRLN*
Ga0075109_100039721	3300005912	Saline Lake	MNRLAKMFEPSKERLIRNARNSMLTAHDPWFKSYWERVLNHLLTVYKRHD*
Ga0066364_100006148	3300005960	Marine	MKDLIDPNVWTKMFEPSKERLIKNARTMMLNAQDPWFKEYWEKVYQHLLKVYGRLN*
Ga0066364_100059923	3300005960	Marine	MSNQLTKMFEPSKERLIRNARTSMMNAQDPWFKAYWEKVLQHLLKAYKRLD*
Ga0066364_100442262	3300005960	Marine	MNSLSKLFEPSKDRLIKNARSMMLTAQDPWFKSYWEKVYKHLLKVYGRLN*
Ga0066370_102727473	3300005971	Marine	KERLIRNARTCMMNAQDPWFKKYWEKVLQHLLKAYKRLD*
Ga0075474_100224661	3300006025	Aqueous	MTDLAKLFEASQDRLIKNAKTMMENAQHQWFRDYWEKVYLHLLKQYDRLN*
Ga0099675_17588483	3300006334	Marine	MSNQLTKMFEPSKERLIRNARNSMMNAQDPWFKAYWEKVLQHLLKAYK
Ga0068495_10913743	3300006337	Marine	MSNQLIKMFVPSKERLIRNARTCMMNAQDPWFKKYWEKVLQHLLKAYKRLD*
Ga0098038_12169443	3300006735	Marine	MNRLAKMFEPSKERLINNARAMMQTANDPWFKSYWEKVYKHLLKQYGRLN*
Ga0098037_10399724	3300006737	Marine	MNRLAKIFEPSKERLMKNARTMMLNAQDPWFKSYWEKVYKHLLKEYGRLN*
Ga0098037_12014933	3300006737	Marine	MNNLIDPNVLTKMFEPSKERLIRNARSMMLTAQDPWFKSYWEKVYQHLLKVYGRLN*
Ga0075476_1000789011	3300006867	Aqueous	DLAKLFEASQDRLIKNAKTMMENAQHQWFRDYWEKVYLHLLKQYDRLN*
Ga0075476_102326461	3300006867	Aqueous	LIRNARNCMNSAQDPWFKAYWEKVLNHLLTVYKRYD*
Ga0075481_100537232	3300006868	Aqueous	MNNLSKIFEPSKDRLIRNARNCMNSAQDPWFKAYWEKVLNHLLTVYKRYD*
Ga0075481_103301872	3300006868	Aqueous	MSSLSKIFEPSKDRLIRNARNCMNSAQDPWFRAYWEKVLNHLLKVYKRYD*
Ga0101668_10288404	3300007114	Volcanic Co2 Seep Seawater	MSNQLTKMFEPSKERLIRNARTCMMNAQDTWFKKYWEKVLQHLLKAYKRLD*
Ga0102960_10074098	3300009000	Pond Water	MSKLSKIFEPSKDRLIRNARNCMNTAQDPSFRAYWERVLNHLLKVYKRYD*
Ga0114993_104160864	3300009409	Marine	MNNLSKMFEPSKERLIRNARNSMLSAQDPWFKSYWEGVLNHLLTVY
Ga0115555_10987064	3300009476	Pelagic Marine	MNRLAKMFEPSKDRLINNARTMMQTAHDPWFKSYWEKVYKHLLKEYRRLN*
Ga0160423_103446064	3300012920	Surface Seawater	MKDLIDPSVWTKMFEPSKERLIKNARTMMLNAQDPWFKEYWEKVYKHLLKVYGRLN*
Ga0163109_100695331	3300012936	Surface Seawater	VLTKMFEPSKERLIKNARTMMVNAQDPWFKSYWEKVYQHLLKAYGRLN*
Ga0182078_102254782	3300016747	Salt Marsh	MEKLKRWTMSSLSKIFEPSKDRLIRNARNCMNSAQDPWFRAYWEKVLNHLLKVYKRYD
Ga0180120_100202541	3300017697	Freshwater To Marine Saline Gradient	MFEPSKERLIRNARNSMLSAQDPWFKSYWEGVLNHLLTVY
Ga0181426_10010241	3300017733	Seawater	SKERLINNARAMMQTANDPWFKSYWEKVYKHLLKEYGRLN
Ga0181397_10012055	3300017744	Seawater	MNRLAKMFEPSKERLINNARAMMQTANDPWFKAYWEKVYKHLLKEYGRLN
Ga0181411_12164293	3300017755	Seawater	RMNNLIDPNVLTKMFEPSKERLMRNARSMMLTAQDPWFKSYWEKVYQHLLKVYGRLN
Ga0181382_10376702	3300017756	Seawater	MNKSNALTKMFEPSKERLMRNARSMMLTAQDPWFKSYWEKVYQHLLKVYGRLN
Ga0181413_100043519	3300017765	Seawater	MFEPSKERLINNARTMMQTAHDPWFKSYWEKVYKHLLKEYGRLN
Ga0187221_10572961	3300017769	Seawater	MNNLIDPNVLTKMFEPSKERLMRNARSMMLTAQDPW
Ga0187221_10600501	3300017769	Seawater	KNYPIKKLLKEMKMNKSNALTKMFEPSKERLMRNARSMMLTAQDPWFKSYWEKVYQHLLKVYGRLN
Ga0181584_102139531	3300017949	Salt Marsh	MNSLSKIFEPSKDRLIRNARNCMNTAQDPWFRSYWEKVLNHLLK
Ga0181581_1000275736	3300017962	Salt Marsh	MNRLAKIFEPSKERLMKNARTMMLNAQDPWFKSYWEKVYKHLLKEYGRLN
Ga0181590_107401354	3300017967	Salt Marsh	MTELSKIFEPSKERLINNARTMMLTAQDPWFKSYWEKVYKHLLKVYGRL
Ga0181553_103314285	3300018416	Salt Marsh	MTELSKIFEPSKERLINNARTMMLTAQDPWFKSYWEKVYQHLLKVYGRLN
Ga0181558_100315979	3300018417	Salt Marsh	MNRIAKIFEPSKERLMKNARTMMLNAQDPWFKSYWEKVYKHLLKEYGRLN
Ga0181574_103524194	3300020056	Salt Marsh	MNRLAKIFEPSKERLMKNARTMMLNAQDPWFKSYWEKVYKHLLKE
Ga0181603_100324377	3300020174	Salt Marsh	MNNLSKIFEPSKDRLIRNARNCMNSAQDPWFKAYWEKVLNHLLTVYKRYD
Ga0206124_100279155	3300020175	Seawater	MLSKMHNQESFDSEITRGQIMNRLAKMFEPSKDRLINNARTMMQTAHDPWFKSYWEKVYKHLLKEYGRLN
Ga0211654_10524953	3300020247	Marine	MKNLINPDVLTKMFEPSKERLIKNARTMMLNAQDPWFKSYWEKVYKHLLKVYGRLN
Ga0211584_10372151	3300020248	Marine	MKDLIDPSVWTKMFEPSKERLIKNARTMMLNAQDPWFKEYWEKVYKHLLKV
Ga0211704_10336583	3300020257	Marine	MKDLIDPSVWTKMFEPSKERLIKNARTMMLNAQDPWFKEYWEKVYKHLLKVYGRLN
Ga0211526_100130811	3300020264	Marine	MTELSKIFEPSKERLINNARTMMLTAQDPWFKSYWEKVYKHLLKVYGRLN
Ga0211648_100192210	3300020267	Marine	MKNLINPDVLTKMFEPSKERLIKNARTMMLNAQDPWFKSYWEKVYQHLLKAYGRLN
Ga0211648_11057152	3300020267	Marine	MKDLIDPSVWTKMFEPSKERLIKNARTMMLNAQDPWFKSYWEKVYKHLLK
Ga0211484_10019311	3300020269	Marine	KDRLINNARTMMLTAQDPWFKKYWEKVYKHLLKVYGRLN
Ga0211606_100152613	3300020278	Marine	MSNQLTKMFEPSKDRLIKNARTCMENATDPWFKTYWEKVYKHLLKVYNRLN
Ga0211606_10714662	3300020278	Marine	MIKDIVDPKVITKMFEPSKERLIKNARTCMLNAQDPWFKEYWEKVYQHLLKVYGRLN
Ga0211591_10041519	3300020280	Marine	MSNQLTKMFAPSKDRLIKNARTMMLTAQDPWFKSYWEKVYKHLLKVYGRLN
Ga0211482_10046957	3300020283	Marine	MYNQLTKMFEPSKDRLINNARTMMLTAQDPWFKKYWEKVYKHLLKVYGRLN
Ga0211619_10043275	3300020288	Marine	MSNQLTKMFEPSKDRLINNARTMMLTAQDPWFKKYWEKVYKHLLKVYGRLN
Ga0211520_10042674	3300020294	Marine	MNSLSKLFEPSKDRLIKNARAMMLTAQDPWFKSYWEKVYKHLLKVYGRLN
Ga0211474_100394010	3300020296	Marine	MNSLSKLFEPSKDRLIKNARSMMLTAQDPWFKSYWEKVYKHLLKVYGRLN
Ga0211650_100595910	3300020301	Marine	MKDLIDPSVWTKMFEPSKERLIKNARTMMLNAQDPWFKSYWEKVYQHLLKAYGRLN
Ga0211513_100014910	3300020305	Marine	MSNQLTKMFEPSKDRLIRNARTSMMNAQDPWFKAYWEKVLKHLLKVYGRLN
Ga0211510_10157317	3300020336	Marine	MSSQLTKMFEPSKERLIRNARTSMMNAQDPWFKAYWEKVLQHLLKAYKRLD
Ga0211508_10436554	3300020337	Marine	MSSQLTKMFEPSKERLIRNARTSMMNAQDPWFKAYWEKVLQH
Ga0211594_10284181	3300020340	Marine	PKVITKMFEPSKERLIKNARTCMLNAQDPWFKEYWEKVYQHLLKVYGRLN
Ga0211706_11057353	3300020345	Marine	MNSLSKIFEPSKDRLIKNARTMMLTAQDPWFKSYWEKVYKHLLKVY
Ga0211600_10802383	3300020348	Marine	MIKDIVDPKVITKMFEPSKERLIKNARTCMLNAQDPWFKEYWEKVYQHL
Ga0211703_101826062	3300020367	Marine	MKNLIDQDVLTKMFEPSKERLIKNARTMMLNAQDPWFKSYWEKVYQHLLKAYGRLN
Ga0211674_100085739	3300020368	Marine	MSNQLTKMFEPSKERLIHNARTSMMNAQDPWFKAYWEKVLQHLLKAYKRLD
Ga0211500_11018691	3300020371	Marine	KMFEPSKDRLINNARTMMLTAQDPWFKKYWEKVYKHLLKVYGRLN
Ga0211527_100659656	3300020378	Marine	TKMYEPSKERLIKNAERMMQNAQDPWFKSYWEKVYQHLLKVYGRLN
Ga0211498_100175331	3300020380	Marine	MKDLIDPSVWTKMFEPSKERLIKNARTMMLNAQDPWFKEYWEKVYKHL
Ga0211583_100068631	3300020397	Marine	INNARTMMLTAQDPWFKKYWEKVYKHLLKVYGRLN
Ga0211617_100050339	3300020401	Marine	MNSLSKIFEPSKDRLIKNARTMMLTAQDPWFKSYWEKVYKHLLKVYGRLN
Ga0211532_100116391	3300020403	Marine	MNDLIEPSVWTKMYEPSKERLIKNAERMMQNAQDPWFKSYWEKVYQHLLKVYGRLN
Ga0211659_101924291	3300020404	Marine	MKDLIDPSVWTKMFEPSKERLIKNARTMMLNAQDPWFKEYWEKVY
Ga0211668_103962553	3300020406	Marine	MMSNQLTKMFEPSKDRLIKNARTCMENATDPWFKTYWEKVYKHLLKVYNRLN
Ga0211587_102532503	3300020411	Marine	MYNQLTKMFEPSKDRLINNARTMMLTAQDPWFKKYWEKVYKHLLKVY
Ga0211565_100424109	3300020433	Marine	MIKDIVDPKVITKMFEPSKERLIKNARTCMLNAQDPWFKEYWEKV
Ga0211565_101349464	3300020433	Marine	MSNQLTKMFEPSKERLIRNARTCMMNAKDPWFKKYWEKVLQHLLKAYKRLD
Ga0211565_104104283	3300020433	Marine	DPKVITKMFEPSKERLIKNARTCMLNAQDPWFKEYWEKVYQHLLKVYGRLN
Ga0211576_1000183117	3300020438	Marine	MNRLAKMFEPSKERLINNARAMMQTANDPWFKSYWEKVYKHLLKEYGRLN
Ga0211576_1000206119	3300020438	Marine	MNNLIDPNVLTKMFEPSKERLMRNARSMMLTAQDPWFKSYWEKVYQHLLKVYGRLN
Ga0211518_100573434	3300020440	Marine	MNNLIDSNALIKMFEPSKERLMRNARSMMLTAQDPWFKSYWEKVYQHLLKVYGRLN
Ga0211564_100035528	3300020445	Marine	MNRLAKMFEPSKERLINNARTMMQTANDPWFKSYWEKVYKHLLKEYGRLN
Ga0211638_100168442	3300020448	Marine	MKDLVDPNVWTKMFEPSKERLIKNARTMMLNAQDPWFKEYWEKVYQHLLKVYGRLN
Ga0211643_100198907	3300020457	Marine	MNSLSKIFEPSKERLINNARTMMLTAQDPWFKSYWEKVYKHLLKVYGRLN
Ga0211535_104336073	3300020461	Marine	LSKIFEPSKDRLIKNARTMMLTAQDPWFKSYWEKVYKHLLKVYGRLN
Ga0211577_100158894	3300020469	Marine	MSNQLTKMFEPSKERLIRNARTSMMNAQDPWFKAYWEKVLKHLLKVYGRLN
Ga0211541_102149051	3300020475	Marine	TKMFEPSKDRLIRNARTSMMNAQDPWFKAYWEKVLKHLLKVYGRLN
Ga0213859_100098631	3300021364	Seawater	MEKLKRRMMNSLSKIFEPSKDRLIRNARNCMNTAQDPWFRAYWERVLNHLLKVYKRYD
Ga0206123_1000366213	3300021365	Seawater	MNRLAKMFEPSKDRLINNARTMMQTAHDPWFKSYWEKVYKHLLKEYGRLN
Ga0213860_100087676	3300021368	Seawater	MNSLSKIFEPSKDRLIRNARNCMNTAQDPWFRSYWERVLNHLLKVYKRYD
Ga0222718_1002741610	3300021958	Estuarine Water	MMNNLSKMFEPSKERLIRNARNSMLSAQDPWFKSYWEGVLNHLLTVYKRHD
Ga0222718_100512429	3300021958	Estuarine Water	MSSLSKIFEPSKDRLIRNARNCMNTAQDPWFRAYWEKVLNHLLTVYKRYD
Ga0222716_100286401	3300021959	Estuarine Water	MNNLSKMFEPSKERLIRNARNSMLSAQDPWFKSYWEGVLNHLLTVYKRHD
Ga0222716_100414605	3300021959	Estuarine Water	MSKLSKIFEPSKDRLIRNARNCMNTAQDPSFRAYWERVLNHLLKVYKRYD
Ga0222716_100658399	3300021959	Estuarine Water	MSSLSKIFEPSKDRLIRNARNCMNTAQDPWFRAYWEKVLNHLLKVYKRYD
Ga0222715_100293718	3300021960	Estuarine Water	MNSLSKMFEPSKDRLICNARRMMMTAQDPWFKAYWEKVLNHLLTVYKRYD
Ga0222669_100179210	3300022825	Saline Water	MNRLAKMFEPSKERLIRNARNSMLTAHDPWFKSYWERVLNHLLTVYKRHD
Ga0222668_10055689	3300022865	Saline Water	RGQIMNRLAKMFEPSKERLIRNARNSMLTAHDPWFKSYWERVLNHLLTVYKRHD
Ga0255752_103422021	3300022929	Salt Marsh	MNSLSKIFEPSKDRLIRNARNCMNTAQDPWFRSYWEKVLNHLLKVYKRYD
Ga0255776_100863518	3300023173	Salt Marsh	IRNARNCMNSAQDPWFKAYWEKVLNHLLKVYKRYD
Ga0244775_110855813	3300024346	Estuarine	MNRLAKMFEPSKERLINNARTMMQTAHDPWFKSYWEKVYKHLLKEYGRLN
Ga0208157_10926131	3300025086	Marine	TRGSIVNRLAKMFEPSKERLINNARAMMQTANDPWFKSYWEKVYKHLLKQYGRLN
Ga0208149_10456873	3300025610	Aqueous	MTDLAKLFEASQDRLIKNAKTMMENAQHQWFRDYWEKVYLHLLKQYDRLN
Ga0209406_11580911	3300025694	Pelagic Marine	SFDSEITRGQIMNRLAKMFEPSKDRLINNARTMMQTAHDPWFKSYWEKVYKHLLKEYGRL
Ga0209771_11927473	3300025701	Marine	KERLIRNARNSMLSAQDPWFKSYWEKVLNHLLKVYKRYD
Ga0208390_10007529	3300026081	Marine	MSNQLTKMFEPSKERLIRNARTSMMNAQDPWFKAYWEKVLQHLLKAYKRLD
Ga0208390_10157468	3300026081	Marine	MKDLIDPNVWTKMFEPSKERLIKNARTMMLNAQDPWFKEYWEKVYQHLLKVYGRLN
Ga0208127_10279221	3300026201	Marine	MKNLINPDVLTKMFEPSKERLIKNARTMMLNAQDPWFKSYWEKVYQHLLKAYGR
Ga0209404_100738773	3300027906	Marine	MNRLAKIFEPSKERLMKNAKTMMLNAQDPWFKSYWEKVYKHLLKEYGRLN
Ga0302134_101842101	3300031596	Marine	FEPSKERLIRNARNSMLSAQDPWFKSYWEGVLNHLLTVYKRHD
Ga0315331_106936533	3300031774	Seawater	FEPSKERLINNAKAMMQTAHDPWFKSYWEKVYKHLLKEYGRLN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F071301

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences