NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F071392

Metagenome / Metatranscriptome Family F071392

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F071392
Family Type Metagenome / Metatranscriptome
Number of Sequences 122
Average Sequence Length 77 residues
Representative Sequence VSLRRRRLPEHLEAPARAFDDLLPPLERARAALTGSVPGTRLPGRPLAETLSEFEDGLREVRDGMDAWRSPDVEPEWE
Number of Associated Samples 118
Number of Associated Scaffolds 122

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 40.59 %
% of genes near scaffold ends (potentially truncated) 81.97 %
% of genes from short scaffolds (< 2000 bps) 71.31 %
Associated GOLD sequencing projects 110
AlphaFold2 3D model prediction Yes
3D model pTM-score0.61

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (80.328 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(13.115 % of family members)
Environment Ontology (ENVO) Unclassified
(29.508 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(34.426 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 48.11%    β-sheet: 0.00%    Coil/Unstructured: 51.89%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.61
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 122 Family Scaffolds
PF03009GDPD 86.89
PF10576EndIII_4Fe-2S 9.02
PF10079BshC 0.82
PF08281Sigma70_r4_2 0.82
PF06480FtsH_ext 0.82
PF03575Peptidase_S51 0.82
PF13490zf-HC2 0.82

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 122 Family Scaffolds
COG0584Glycerophosphoryl diester phosphodiesteraseLipid transport and metabolism [I] 86.89
COG0465ATP-dependent Zn proteasesPosttranslational modification, protein turnover, chaperones [O] 0.82

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms80.33 %
UnclassifiedrootN/A19.67 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2067725002|GPICC_F5MS3JC01EK9DLAll Organisms → cellular organisms → Bacteria550Open in IMG/M
3300000033|ICChiseqgaiiDRAFT_c0766516All Organisms → cellular organisms → Bacteria506Open in IMG/M
3300000550|F24TB_10031876All Organisms → cellular organisms → Bacteria1517Open in IMG/M
3300000890|JGI11643J12802_11644853All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium617Open in IMG/M
3300001978|JGI24747J21853_1019222All Organisms → cellular organisms → Bacteria736Open in IMG/M
3300002123|C687J26634_10226829All Organisms → cellular organisms → Bacteria635Open in IMG/M
3300004157|Ga0062590_102225598All Organisms → cellular organisms → Bacteria575Open in IMG/M
3300004463|Ga0063356_106003994All Organisms → cellular organisms → Bacteria521Open in IMG/M
3300005105|Ga0066812_1012215All Organisms → cellular organisms → Bacteria626Open in IMG/M
3300005159|Ga0066808_1020314All Organisms → cellular organisms → Bacteria649Open in IMG/M
3300005332|Ga0066388_107941872All Organisms → cellular organisms → Bacteria531Open in IMG/M
3300005334|Ga0068869_102137175All Organisms → cellular organisms → Bacteria503Open in IMG/M
3300005345|Ga0070692_10982360All Organisms → cellular organisms → Bacteria589Open in IMG/M
3300005467|Ga0070706_100754480All Organisms → cellular organisms → Bacteria901Open in IMG/M
3300005539|Ga0068853_102368376All Organisms → cellular organisms → Bacteria514Open in IMG/M
3300005564|Ga0070664_100619648All Organisms → cellular organisms → Bacteria1004Open in IMG/M
3300005577|Ga0068857_101311814All Organisms → cellular organisms → Bacteria703Open in IMG/M
3300005937|Ga0081455_10171998All Organisms → cellular organisms → Bacteria1649Open in IMG/M
3300005937|Ga0081455_10756181All Organisms → cellular organisms → Bacteria614Open in IMG/M
3300005981|Ga0081538_10139308All Organisms → cellular organisms → Bacteria1122Open in IMG/M
3300006196|Ga0075422_10104235All Organisms → cellular organisms → Bacteria1092Open in IMG/M
3300006576|Ga0074047_10001545All Organisms → cellular organisms → Bacteria807Open in IMG/M
3300006580|Ga0074049_13178956All Organisms → cellular organisms → Bacteria522Open in IMG/M
3300006581|Ga0074048_10092524All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia5938Open in IMG/M
3300006844|Ga0075428_100024627All Organisms → cellular organisms → Bacteria6661Open in IMG/M
3300006845|Ga0075421_100873813All Organisms → cellular organisms → Bacteria1028Open in IMG/M
3300006846|Ga0075430_100363177All Organisms → cellular organisms → Bacteria1195Open in IMG/M
3300006852|Ga0075433_11609888All Organisms → cellular organisms → Bacteria560Open in IMG/M
3300009011|Ga0105251_10161381All Organisms → cellular organisms → Bacteria1010Open in IMG/M
3300009094|Ga0111539_10259642All Organisms → cellular organisms → Bacteria2022Open in IMG/M
3300009100|Ga0075418_10571625All Organisms → cellular organisms → Bacteria1216Open in IMG/M
3300009147|Ga0114129_11566755All Organisms → cellular organisms → Bacteria808Open in IMG/M
3300009156|Ga0111538_13567913All Organisms → cellular organisms → Bacteria539Open in IMG/M
3300009545|Ga0105237_11694859All Organisms → cellular organisms → Bacteria639Open in IMG/M
3300009809|Ga0105089_1017028All Organisms → cellular organisms → Bacteria953Open in IMG/M
3300009811|Ga0105084_1055040All Organisms → cellular organisms → Bacteria708Open in IMG/M
3300009815|Ga0105070_1077842All Organisms → cellular organisms → Bacteria636Open in IMG/M
3300009818|Ga0105072_1140775All Organisms → cellular organisms → Bacteria503Open in IMG/M
3300009837|Ga0105058_1026080All Organisms → cellular organisms → Bacteria1248Open in IMG/M
3300010029|Ga0105074_1036591All Organisms → cellular organisms → Bacteria846Open in IMG/M
3300010038|Ga0126315_10029622All Organisms → cellular organisms → Bacteria2837Open in IMG/M
3300010041|Ga0126312_10014999All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia5178Open in IMG/M
3300010375|Ga0105239_13620489All Organisms → cellular organisms → Bacteria502Open in IMG/M
3300010399|Ga0134127_11732843All Organisms → cellular organisms → Bacteria700Open in IMG/M
3300010400|Ga0134122_10125508All Organisms → cellular organisms → Bacteria2062Open in IMG/M
3300010403|Ga0134123_11531647All Organisms → cellular organisms → Bacteria712Open in IMG/M
3300011398|Ga0137348_1010030All Organisms → cellular organisms → Bacteria1423Open in IMG/M
3300011432|Ga0137428_1221005All Organisms → cellular organisms → Bacteria561Open in IMG/M
3300013297|Ga0157378_10862830All Organisms → cellular organisms → Bacteria934Open in IMG/M
3300013306|Ga0163162_11663383All Organisms → cellular organisms → Bacteria729Open in IMG/M
3300014318|Ga0075351_1049752All Organisms → cellular organisms → Bacteria775Open in IMG/M
3300014326|Ga0157380_11071220All Organisms → cellular organisms → Bacteria844Open in IMG/M
3300017792|Ga0163161_11559730All Organisms → cellular organisms → Bacteria581Open in IMG/M
3300017965|Ga0190266_10528467Not Available695Open in IMG/M
3300017997|Ga0184610_1044498All Organisms → cellular organisms → Bacteria1294Open in IMG/M
3300018031|Ga0184634_10023810All Organisms → cellular organisms → Bacteria2355Open in IMG/M
3300018067|Ga0184611_1168038All Organisms → cellular organisms → Bacteria779Open in IMG/M
3300018071|Ga0184618_10427097All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium559Open in IMG/M
3300018075|Ga0184632_10362448All Organisms → cellular organisms → Bacteria617Open in IMG/M
3300018078|Ga0184612_10085347All Organisms → cellular organisms → Bacteria1650Open in IMG/M
3300018465|Ga0190269_10370969All Organisms → cellular organisms → Bacteria871Open in IMG/M
3300018476|Ga0190274_10022302All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4182Open in IMG/M
3300019356|Ga0173481_10392514All Organisms → cellular organisms → Bacteria676Open in IMG/M
3300020005|Ga0193697_1021693All Organisms → cellular organisms → Bacteria1596Open in IMG/M
3300021081|Ga0210379_10167877All Organisms → cellular organisms → Bacteria938Open in IMG/M
3300021510|Ga0222621_1005976All Organisms → cellular organisms → Bacteria2167Open in IMG/M
3300022756|Ga0222622_11035199All Organisms → cellular organisms → Bacteria603Open in IMG/M
3300025326|Ga0209342_10734793All Organisms → cellular organisms → Bacteria786Open in IMG/M
3300025938|Ga0207704_10238976All Organisms → cellular organisms → Bacteria1356Open in IMG/M
3300025945|Ga0207679_11652422All Organisms → cellular organisms → Bacteria587Open in IMG/M
3300026116|Ga0207674_10057245All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3952Open in IMG/M
3300026929|Ga0207461_1000743Not Available1046Open in IMG/M
3300027163|Ga0209878_1011577All Organisms → cellular organisms → Bacteria1233Open in IMG/M
3300027277|Ga0209846_1015378All Organisms → cellular organisms → Bacteria1274Open in IMG/M
3300027907|Ga0207428_10945864All Organisms → cellular organisms → Bacteria607Open in IMG/M
(restricted) 3300028043|Ga0233417_10425872All Organisms → cellular organisms → Bacteria615Open in IMG/M
3300028381|Ga0268264_10062200All Organisms → cellular organisms → Bacteria3134Open in IMG/M
3300028381|Ga0268264_11394331All Organisms → cellular organisms → Bacteria711Open in IMG/M
3300028589|Ga0247818_11260255All Organisms → cellular organisms → Bacteria530Open in IMG/M
3300028592|Ga0247822_11150528All Organisms → cellular organisms → Bacteria646Open in IMG/M
3300028708|Ga0307295_10132648All Organisms → cellular organisms → Bacteria685Open in IMG/M
3300028711|Ga0307293_10150477All Organisms → cellular organisms → Bacteria740Open in IMG/M
3300028719|Ga0307301_10248829All Organisms → cellular organisms → Bacteria580Open in IMG/M
3300028784|Ga0307282_10197431All Organisms → cellular organisms → Bacteria961Open in IMG/M
3300028791|Ga0307290_10038230All Organisms → cellular organisms → Bacteria1715Open in IMG/M
3300028793|Ga0307299_10113063All Organisms → cellular organisms → Bacteria1017Open in IMG/M
3300028796|Ga0307287_10172013All Organisms → cellular organisms → Bacteria823Open in IMG/M
3300028803|Ga0307281_10353187All Organisms → cellular organisms → Bacteria556Open in IMG/M
3300028819|Ga0307296_10517996All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium652Open in IMG/M
3300030336|Ga0247826_10807519All Organisms → cellular organisms → Bacteria735Open in IMG/M
3300031740|Ga0307468_100036174All Organisms → cellular organisms → Bacteria2422Open in IMG/M
3300031943|Ga0310885_10747453All Organisms → cellular organisms → Bacteria552Open in IMG/M
3300031949|Ga0214473_10089414All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3598Open in IMG/M
3300031965|Ga0326597_10024324All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria7775Open in IMG/M
3300032013|Ga0310906_11447703All Organisms → cellular organisms → Bacteria505Open in IMG/M
3300032075|Ga0310890_10756992All Organisms → cellular organisms → Bacteria766Open in IMG/M
3300032122|Ga0310895_10329282All Organisms → cellular organisms → Bacteria730Open in IMG/M
3300033417|Ga0214471_10387185All Organisms → cellular organisms → Bacteria1129Open in IMG/M
3300033815|Ga0364946_057721All Organisms → cellular organisms → Bacteria815Open in IMG/M
3300034147|Ga0364925_0210058All Organisms → cellular organisms → Bacteria718Open in IMG/M
3300034149|Ga0364929_0190740Not Available675Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil13.11%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere8.20%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment7.38%
Groundwater SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand7.38%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil5.74%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil5.74%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil4.92%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil3.28%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil3.28%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.28%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil2.46%
SoilEnvironmental → Terrestrial → Soil → Loam → Unclassified → Soil2.46%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment2.46%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere2.46%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere2.46%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil1.64%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.64%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil1.64%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere1.64%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.64%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere1.64%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.64%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.64%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere1.64%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.82%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment0.82%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.82%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands0.82%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.82%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.82%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.82%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere0.82%
Corn, Switchgrass And Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.82%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere0.82%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.82%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.82%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.82%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2067725002Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000033Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000550Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemlyEnvironmentalOpen in IMG/M
3300000890Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000955Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300001978Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6Host-AssociatedOpen in IMG/M
3300002123Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_3EnvironmentalOpen in IMG/M
3300002530Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_3EnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004157Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2EnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300004480Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4EnvironmentalOpen in IMG/M
3300004643Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3EnvironmentalOpen in IMG/M
3300005105Soil and rhizosphere microbial communities from Laval, Canada - mgHPCEnvironmentalOpen in IMG/M
3300005159Soil and rhizosphere microbial communities from Laval, Canada - mgLPBEnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005334Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2Host-AssociatedOpen in IMG/M
3300005345Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaGEnvironmentalOpen in IMG/M
3300005441Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaGEnvironmentalOpen in IMG/M
3300005466Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaGEnvironmentalOpen in IMG/M
3300005467Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaGEnvironmentalOpen in IMG/M
3300005539Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2Host-AssociatedOpen in IMG/M
3300005549Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaGEnvironmentalOpen in IMG/M
3300005564Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaGHost-AssociatedOpen in IMG/M
3300005577Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2Host-AssociatedOpen in IMG/M
3300005937Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1Host-AssociatedOpen in IMG/M
3300005981Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1Host-AssociatedOpen in IMG/M
3300006196Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1Host-AssociatedOpen in IMG/M
3300006576Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPA (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006580Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPC (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006581Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006844Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2Host-AssociatedOpen in IMG/M
3300006845Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5Host-AssociatedOpen in IMG/M
3300006846Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4Host-AssociatedOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300009011Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaGHost-AssociatedOpen in IMG/M
3300009094Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009545Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaGHost-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300009809Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_30_40EnvironmentalOpen in IMG/M
3300009811Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30EnvironmentalOpen in IMG/M
3300009815Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10EnvironmentalOpen in IMG/M
3300009818Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40EnvironmentalOpen in IMG/M
3300009823Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_40_50EnvironmentalOpen in IMG/M
3300009837Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30EnvironmentalOpen in IMG/M
3300009840Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105AEnvironmentalOpen in IMG/M
3300010029Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_10_20EnvironmentalOpen in IMG/M
3300010038Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106EnvironmentalOpen in IMG/M
3300010041Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104AEnvironmentalOpen in IMG/M
3300010042Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105BEnvironmentalOpen in IMG/M
3300010375Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaGHost-AssociatedOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300011398Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT600_2EnvironmentalOpen in IMG/M
3300011432Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT718_2EnvironmentalOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300014318Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D1_rdEnvironmentalOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300017792Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaGHost-AssociatedOpen in IMG/M
3300017965Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 TEnvironmentalOpen in IMG/M
3300017997Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coexEnvironmentalOpen in IMG/M
3300018031Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1EnvironmentalOpen in IMG/M
3300018052Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2EnvironmentalOpen in IMG/M
3300018054Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1EnvironmentalOpen in IMG/M
3300018067Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coexEnvironmentalOpen in IMG/M
3300018071Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1EnvironmentalOpen in IMG/M
3300018075Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1EnvironmentalOpen in IMG/M
3300018078Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coexEnvironmentalOpen in IMG/M
3300018083Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1EnvironmentalOpen in IMG/M
3300018465Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 ISEnvironmentalOpen in IMG/M
3300018476Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 TEnvironmentalOpen in IMG/M
3300019356Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)EnvironmentalOpen in IMG/M
3300020005Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m2EnvironmentalOpen in IMG/M
3300021081Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redoEnvironmentalOpen in IMG/M
3300021510Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_coexEnvironmentalOpen in IMG/M
3300022756Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1EnvironmentalOpen in IMG/M
3300025326Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_2 (SPAdes)EnvironmentalOpen in IMG/M
3300025937Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025938Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025945Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025961Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026116Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026929Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05.2A3w-12 (SPAdes)EnvironmentalOpen in IMG/M
3300026933Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10K4-12 (SPAdes)EnvironmentalOpen in IMG/M
3300027163Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_40_50 (SPAdes)EnvironmentalOpen in IMG/M
3300027277Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_20_30 (SPAdes)EnvironmentalOpen in IMG/M
3300027907Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300028043 (restricted)Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_0.5_MGEnvironmentalOpen in IMG/M
3300028381Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028589Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1EnvironmentalOpen in IMG/M
3300028592Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30EnvironmentalOpen in IMG/M
3300028708Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152EnvironmentalOpen in IMG/M
3300028711Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150EnvironmentalOpen in IMG/M
3300028719Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182EnvironmentalOpen in IMG/M
3300028784Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121EnvironmentalOpen in IMG/M
3300028791Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144EnvironmentalOpen in IMG/M
3300028793Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159EnvironmentalOpen in IMG/M
3300028796Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141EnvironmentalOpen in IMG/M
3300028803Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120EnvironmentalOpen in IMG/M
3300028811Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149EnvironmentalOpen in IMG/M
3300028819Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153EnvironmentalOpen in IMG/M
3300030336Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031943Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2EnvironmentalOpen in IMG/M
3300031949Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197EnvironmentalOpen in IMG/M
3300031965Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185EnvironmentalOpen in IMG/M
3300032013Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3EnvironmentalOpen in IMG/M
3300032075Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3EnvironmentalOpen in IMG/M
3300032122Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4EnvironmentalOpen in IMG/M
3300033417Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT142D155EnvironmentalOpen in IMG/M
3300033815Sediment microbial communities from East River floodplain, Colorado, United States - 31_s17EnvironmentalOpen in IMG/M
3300034147Sediment microbial communities from East River floodplain, Colorado, United States - 44_j17EnvironmentalOpen in IMG/M
3300034149Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
GPICC_037084302067725002SoilLPEHLEAPAKAFDDLLPRLERARPPLHRVRCPARASPGRPLAETLSEFEDGLREVREGMDAWRSADVEPEWEACSRVSTRRSSSPTG
ICChiseqgaiiDRAFT_076651623300000033SoilVSLRRRRLPEHLEAPAKAFDDLLPPLERAKAALTGSVPGTRLPGRPLAETLSEFEXGLREVREGMDAWRSADV
F24TB_1003187613300000550SoilVSLRRRRLPEHLESPARAFDDLLPPLERARAALTGSVPGTRLPGRPLAETLSEFEDGLREVRDGMDAWRSADVEPEWEACSRGLDEALA
JGI11643J12802_1164485313300000890SoilRSVSLRRRRLPEHLEGPARAFDDLLPPLERARAALTGSVPGTRLPGRPLAETLSEFEGGLREVRHGMSAWRSPDVEPEWEACSRGLD
JGI1027J12803_10044982513300000955SoilVSLRRRRLPEHLEGPAREFDDLLPALERARAALTGSVPGTRLPGRPLAETL
JGI24747J21853_101922223300001978Corn, Switchgrass And Miscanthus RhizosphereVSPRRRRLPEHLEAPARAFDDLLPALERARAILTESVPGTRLPGRPLAETLSEFEEGLREVRGGMDAWRSPDLEPEWDACSRGLDQSLALADRVRTVGAHPEGFEG
C687J26634_1022682913300002123SoilMFRRRRLPGHLDGPYRAFEAIVPPLERAKAALTGSVPGTRLPGRPLAETLLGFENGLREVAAGMDAWRESEVEEVWLG
C687J35503_1011774613300002530SoilVIFRRRRLPEHLAAPFEAFQALVPMLERAKAALTESVPGTRLPGRPL
Ga0062593_10291366523300004114SoilVSPRRRRLPEHLEAPAKAFDDLLPALERARAVLTESVPGTRLPGRPLAET
Ga0062590_10222559823300004157SoilMAFDDLLPALEHARAVLTESVPGTRLPGRPLAETLSEFEDGLREV
Ga0063356_10600399413300004463Arabidopsis Thaliana RhizosphereVSLRRRRLPEHLEAPARAFDDLLPPLERARAALTGSVPGTRLPGRPLAETLSEFEDGLRE
Ga0062592_10164107213300004480SoilVSPRRRRLPEHLEAPAKAFDDLLPALERARAVLTESVPGTRLPGRPLAETLSEF
Ga0062592_10221616713300004480SoilVSLRRRRLPEHLEGAARAFDDLLPRLGRAEAVLTGSVPGTRLPGRPLAETLWEFEDG
Ga0062591_10196590123300004643SoilLPEHLEAPAKAFDDLLPALERARAVLTESVPGTRLPGRPLAETLSEFEDGLREVR
Ga0066812_101221513300005105SoilVSLRRRRLPEHLEGPARAFDDLLLPLGRAKAALTGAVPGTRLPGRPLAETLSEFEDGLREVHDGMDAWRSPD
Ga0066808_102031423300005159SoilVSLRRRRLPEHLEGPARAFDDLLLPLERAKAALTGAVPGTRLPGRPLAETLSEFEDGLREVRDGMDAWRSPGLESEWDACSRGLDESLALADRVR
Ga0066388_10794187213300005332Tropical Forest SoilVTLRRRRLPEELREPARAFDDLVPVLERAKAALTDAVPRTRLPGRPLAEALWAFEGGLRE
Ga0068869_10213717513300005334Miscanthus RhizosphereVLRRRRLPEELVAPASAFDAVIPHLERAKSALTSSVPGTRMPGRPLAETLHEFETALGVVRDGM
Ga0070692_1098236023300005345Corn, Switchgrass And Miscanthus RhizosphereVSPRRRRLPEHLEAPARAFDDLLPALERARAILTESVPGTRLPGRPLAETLSEFEEGLREVRGGMDAWRSPDLEPEWDACSRGLDQSLAL
Ga0070700_10198211413300005441Corn, Switchgrass And Miscanthus RhizosphereLPEHLEAPAKAFDDLLPALERARAVLTESVPGTRLPGRPLAETLSEFEDGLREV
Ga0070685_1151222123300005466Switchgrass RhizosphereVLRRRRLPEELVAPASAFDAVIPHLERARSALTSSVPGTRMPGRPLAETL
Ga0070706_10075448013300005467Corn, Switchgrass And Miscanthus RhizosphereVSLRRRRLPEHLEAPAKAFDDLLPPLEQARAALTGSVPGTRLPGRPLAETLSEFEDGLREVRDGMDAWRSADVEP
Ga0068853_10236837613300005539Corn RhizosphereVSPRRRRLPEGLEAPARAFDDLLPALERARAVLTESVPGTRLPGRPLAETLSEFEEGLR
Ga0070704_10167758623300005549Corn, Switchgrass And Miscanthus RhizosphereVLRRRRLPEELVAPASAFDALIPHLERAKAALTSSVPGTRLPGRP
Ga0070664_10061964813300005564Corn RhizosphereVLRRRRLPEELVAPASAFDALIPHLERAKAALTSSVPGTRLPGRPLAETLHEFETALGVVRD
Ga0068857_10131181423300005577Corn RhizosphereVSLRRRRLPEHLEAPARAFDDLLPPLERAKAALTGSVPGTRLPGRPLAETLSEFEDGLREVRDGMDAWRSPDLELEWEECSRGLDEA
Ga0081455_1017199833300005937Tabebuia Heterophylla RhizosphereVRLRRRRQPEALRAPARAFDDLLPALERAKAALADAVPGTRLPGRPLAEALWAFEAGLRQGEQRMATWRSP
Ga0081455_1075618113300005937Tabebuia Heterophylla RhizosphereVIGRRRRLPEELEGPARAFDELVPALERAKAALTESVPGTRLPGRPLAETLWEFETGLREVRAGMDA
Ga0081538_1013930823300005981Tabebuia Heterophylla RhizosphereVRSRRRRLAERLDGPARAFDDLVSVLERAKVALTESVPGTRLPGRPLAETLWEFEAGLREVRAAMDTWRAPEVEEAWIAASAGLDEALALAERVR
Ga0075422_1010423513300006196Populus RhizosphereVTLRRRRIPEELRAPARAFDDLVPVLERAKAALTDAVPGTRMPGRPLAEALWAFESGLREVEERMPAWRSPEVE
Ga0074047_1000154513300006576SoilVSLRRRRLPEHLEGPARAFDDLLLPLGRAKAALTGAVPGTRLPGRPLAETLSEFEDGLREVRDGMDAWRSPDVEPEWE
Ga0074047_1185481923300006576SoilLPEHLEGRARAFDEMLPALERARVVLTESVPGTRLPGRALAETLSEFE
Ga0074049_1317895623300006580SoilVSLRRRRLPEHLEAPARAFDDLLPPLERARAALTGSVPGTRLPGRPLAETLSEFEDGLREVRDGMDAWRSPDVEPEWE
Ga0074048_1009252493300006581SoilVSLRRRRLPEHLEGPARAFDDLLLPLGRAKAALTGAVPGTRLPGRPLAETLSEFEDGLREVRDGMDAWRSPDVEPEWEACSRGLDEALA
Ga0075428_100024627103300006844Populus RhizosphereVNLRRKRLPDHLEAPSRALDELIGSLERARAALTESVPGTRLPGRPLAESVSEFEDGLREVRARMDGWRAPEVEQAWLDAFAGLDDALGLAEGVRTEG
Ga0075421_10087381323300006845Populus RhizosphereVILRRKRLPDHLEAPSRALDELIPTLERARAALTESVPGTRLPGRPLAESLSEFEDGLREVRARMGEWRA
Ga0075430_10036317733300006846Populus RhizosphereVILRRKRLPDHLEAPSRALDELIPTLERARAALTESVPGTRLPGRPLAESLSEFEDGLREVRARMGEWRAQEVDQAWLDASAGLDDAMGLAERVRTEG
Ga0075433_1160988813300006852Populus RhizosphereVTLRRRGLPERLRGPARAFDDLVPVLERAKDALTDAVPGTRLPGRPLAEALWAFE
Ga0105251_1016138113300009011Switchgrass RhizosphereLPEHLEAPARAFDDLLPALERARAILTESVPGTRLPGRPLAETLSEFEEGLREVRGGMDAWRSPDLEPEWDACSRGLDQSLALADRVRTVGAHPEGFEGL
Ga0111539_1025964243300009094Populus RhizosphereVTLRRRRIPEELRAPARAFDDLVPVLERAKAALTDAVPGTRMPGRPLAEALWAFESGLREVEERMPAWRAPEV
Ga0075418_1057162533300009100Populus RhizosphereVNLRRKRLPDHLEAPSRALDELIGSLERARAALTESVPGTRLPGRPLAESVSEFEDGLREVRARMDGWRAPGVEQAWLDASAGLDEAMGLAERVRTEGV
Ga0114129_1156675513300009147Populus RhizosphereVILRRKRLPDHLEAPSRALDELIPTLERARAALTESVPGTRLPGRPLAESLSEFEDGLREVRARMDGWRAPEVEQAWLDAFAGLDDALGLAEGVRTEG
Ga0111538_1356791323300009156Populus RhizosphereVTLRRRRIPEELRAPARAFDDLVPVLERAKAALTDAVPGTRMPGRPLAEALWAFESGLR
Ga0105237_1169485923300009545Corn RhizosphereVLRRRRLPEELVAPASAFDAVIPHLERAKSALTSSVPGTRLPGRPLAETLHEFETALGVVRDGMD
Ga0105249_1005011113300009553Switchgrass RhizosphereLPEHLEAPAKAFDDLLPPLEQARAALTGSVPGTRLPGRPLAET
Ga0105089_101702823300009809Groundwater SandVILRRKRLPDHLEAPSRALDELIPSLERARAALTESVPGTRLPGRALAETLSEFEDGLREVRG
Ga0105084_105504023300009811Groundwater SandLPEHLEGPSRAFDDLLPPLGRAGAALTGSVPGTRLPGRPLAETLSEFEDGLREVRDGMDAWRSPDVEP
Ga0105070_107784223300009815Groundwater SandLPEHLEAPARAFDDLLPPLERAGTALTGSVPGTRLPGRPLAETLSEFEDGLREVREGMDAWRSPD
Ga0105072_114077513300009818Groundwater SandLPAHLEGAARAFDELLLRLGRAEAALTGTVPGTRLPGRPLAETLWEFEDGLREVRD
Ga0105078_104303623300009823Groundwater SandLPEHLEGAGRAFDDLLLRLGRAEAALTGSVPGTRLPGRPLAETLWEFE
Ga0105058_102608013300009837Groundwater SandVILRRRRLPDHLEAPSRAFDELIPSLERARAALTESVPGTRLPGRPLAESLSEFEDGLREVRARMEGWRAPEVEQAWLDASAGLDEALGLAERVRT
Ga0126313_1076839223300009840Serpentine SoilVSPRRRRLPEHLEGPASAFDDLLPPLGRAEAALTASVPGTRLPGRPLAE
Ga0105074_103659113300010029Groundwater SandVILRRKRLPDHLEAPSLALDELIPSLERARAALTESVPGTRLPGRPLAESLSEFEDGLREVRARMGGWRAPEV
Ga0126315_1002962253300010038Serpentine SoilLPEHLEGPASAFDDLLPPLGRAEAALTGSVPGTRLPGRPLAETLSEFEDGLREVRDGMDAWRSPDIEPEWEACSRGLDEALALADRVRTEGAQPE
Ga0126312_1001499983300010041Serpentine SoilVSPRRRRLPEHLEGPARAFDDLLPPLGRAEAALTGSVPGTRLPGRPLAETLSEFEDGLREVRDGMDAWRS
Ga0126314_1060318513300010042Serpentine SoilLPEHLEGAATAFDDLLPPLGRAEAALTGSVPGTRVPGRPLAETL
Ga0105239_1362048913300010375Corn RhizosphereLPEHLEAPASAFDDLLPPLERARAALTGSVPGTRLPGRPLAETLWEFEGGLREARHGMDAWRSPDVEPEWEACSRGLDEALALADR
Ga0134127_1173284313300010399Terrestrial SoilVLRRRRLPEELVAPASAFDALIPHLERAKAALTSSVPGTRMPGRPLAETLHEFETTLEVVRDGMDAWRAPAVEDVWRASNDGLGEALALAERIR
Ga0134122_1012550813300010400Terrestrial SoilLPEHLQAPARAFDDLLPALERARAVLTESVPGTRLPGRPLAETLSEFEDGLREVREGMDGWRSPDLEPEWDACSRGVEESLALADRVRTEGAHPEGFEGLIGLI
Ga0134123_1153164713300010403Terrestrial SoilVLRRRRLPEELVAPASAFDAVIPHLERAKSALTSSVPGTRMPGRPLAETLDQFETALGVVRDGMDAWRAPAVEDVWRASNDGLAEALALAERVRTDAPDPAGFEGLIALIGDLLAPLDAFTAADERFRE
Ga0137348_101003013300011398SoilVILRRKRLPDHLEAPSRAFDELLPSLERAKAALTESVPGTRLPGRPLAETLSEFEDGLREVRGRMDGWRAPEVEPAWLDASAGL
Ga0137428_122100523300011432SoilVNLRRRRLPEHLEAPARAFDDLLPALERAREVLTESVPGTRLPGRPLAETLSEFEDGLREVREGMGAWRSPDLEPEWDACSRGLDRSLALADRVRT
Ga0157378_1086283023300013297Miscanthus RhizosphereVLRRRRLPEELVALASAFDALIPHLERAKAALTSSVPGTRMPGRPLAETLHEFETALGVVREGMDAW
Ga0163162_1166338323300013306Switchgrass RhizosphereLPEHLEAPARAFDDLLPALERARAILTESVPGTRLPGRPLAETLSEFEDGLREVLEGMDGWRSPDLEPQWDACSRGLDESLALADRVRTQGAHPEDF
Ga0075351_104975223300014318Natural And Restored WetlandsVILRRRRLPEGLAGPYAAFEALIPVLERAKAALTSSVPGTRLPGRPLAETLFEFEEGLREVRAGMDAWRSPEVEQVWRDAARGLDAALALAERVRIEVPAPERHVAA
Ga0157380_1107122023300014326Switchgrass RhizosphereVLRRRRLPEELVAPASAFDAVIPHLERAKSALTSSVPGTRMPGRPLAETLDQFETALGVVRDGMDAWRAPAVEDVWRASNDGLGEALALAERIRTEAPEPAGFE
Ga0163161_1155973023300017792Switchgrass RhizosphereVSPRRRRLPEHLQAPATAFDDLLPALERARAVLTESVPGTRLPGRPLAETLSEFEDGLREVREGMDAWRS
Ga0190266_1052846713300017965SoilVILRRRRLPDHLESPSRAFDELIPSLERAKAALTESVPGTRLPGRALAETLSEFEDRLREVRGRMDGW
Ga0184610_104449813300017997Groundwater SedimentVSLRRRRLPEHLEGPARAFDDLLPPLERARAALTGSVPGTRLPGRPLAETLSEFEDGLREVRDGMDAWRSA
Ga0184634_1002381043300018031Groundwater SedimentVILRRKRLPDHLEAPSRAFDELIPSLERARAALTESVPGTRLPGRPLAETLSEFEDGLREVRERMDGWRAPEVERAWLDASAGLDESLELARRLRTEGAPP
Ga0184638_122298313300018052Groundwater SedimentVSLRRRRLPEHLEAPAKAFDDLLPPLEQARAALTGSVPGTRLPGRPLAETLSEFEDG
Ga0184621_1028815613300018054Groundwater SedimentVSLFRRRLPEHLEGPARAFDELLPPLERAQAALTASVPGTRLPGRPLAETLS
Ga0184611_116803823300018067Groundwater SedimentVSLRRRRLPEHLEGPARAFDDLLPPLERARAALTGSVPGTRLPGRPLAETLSEFEDGLREVREGMDTWRSPDLEPEWEACSRRLDEALALA
Ga0184618_1042709723300018071Groundwater SedimentVSLRRRRLPEHLEAPARAFDDLLPPLERARAALTGSVPGTRLPGRPLAETLSEFEDGLREVRDGMDAWRSPDVEPECEACSRGLDEALAFADRVRTEGVQP
Ga0184632_1036244813300018075Groundwater SedimentVILRRKRLPDHLEAPSRALDELIPSLERASAALTESVPGTRLPGRPLAESLSEFEDGLREVRARMDGWRAPEVERAWLDASAGLDEA
Ga0184612_1008534733300018078Groundwater SedimentVILRRKRLPDHLEAPSRALDELIPSLERASAALTESVPGTRLPGRPLAESLSEFEDGLREVRARMDGWRAPEVERAWLDASAGLDEALGLAERVRTEG
Ga0184628_1057846823300018083Groundwater SedimentVSPRRRRLPEHLEAPSRAFDDLLPALERAQAVLTESVPGTRLPGRPLAETLLEFEDGLR
Ga0190269_1037096913300018465SoilVILRRRRLPDHLESPSRAFDELIPSLERAKAALTESVPGTRLPGRPLAESLSEFEDGLREVRARMGGWRAPEVEQAWLDASAGLDEAM
Ga0190274_1002230213300018476SoilVSPGRRRLPEHLEGPARAFDDLLRPLGAAEAALTASVPGTRLPGRPLAETLSEFEEGLREVRDGMDAWRSPDIEPEWEACS
Ga0173481_1039251423300019356SoilVILRRKRLPEELREPARAFDDLVPFLERAKSALTEAVPGTRLPGRPLGEALSAFETGLGQVRD
Ga0193697_102169333300020005SoilVILRRKRLPDHLEAPSCAFEELIPSLERTKAALTESVPGTRLPGRPLAESLSEFEDGLREVRARMDGWRAPEVERAWL
Ga0210379_1016787713300021081Groundwater SedimentVILRRKRLPDHLEAPSCAFDELIPSLERTKAALTESVPGTRLPGRPLAETLSEFEDGLREVRGRMDGWRAPEVEPAWLDASAGLDESL
Ga0222621_100597613300021510Groundwater SedimentVSLRRRRLPEHLEAPARAFDYLLPPLEQARAALTGSVPGTRLPGRPLAETLSEFEDGLREVRDGMDAWRSPDVEPEWEACSRGLDEALAFADRVRTEGVQPEGFEGL
Ga0222622_1103519923300022756Groundwater SedimentVSLRRRRLPEHLEAPARAFDDLLPALERARAALTGSVPGTRLPGRPLAETLSEFEDGLGEVRDGMDAWRSPDVEPEWDACSRGLDETLA
Ga0209342_1073479323300025326SoilMFRRRRLPEHLEGLYRAFAAIVPPLERAKAALTESVPGTRLPGRPLAETLLEFEEGLREVAAGMDAWRGTEVEEVWVIASAGLD
Ga0207669_1027938033300025937Miscanthus RhizosphereVSPRRRRLPEHLQAPATAFDDLLPALERARAVLTESVPGTRLPGRPLAETLSEFE
Ga0207704_1023897613300025938Miscanthus RhizosphereVSLRRRRLPEHLEAPASAFDDLLPPLERARAALTGSVPGTRLPGRPLAETLWEFEGGLREARHGMDAWRSPDVEPEWEACSRGLDEALALADRVRTEGAQ
Ga0207679_1165242213300025945Corn RhizosphereVLRRRRLPEELVAPASAFDALIPHLERAKAALTSSVPGTRLPGRPLAETLHEFETALGVVRDGMDAWRAPAVEDVWRA
Ga0207712_1167508813300025961Switchgrass RhizosphereVSPRRRRLPEGLEAPARAFDDLLPALERARAVLTESVPGTRLPGRPLAETLS
Ga0207674_1005724563300026116Corn RhizosphereVSLRRRRLPEHLEAPARAFDDLLPPLERAKAALTGSVPGTRLPGRPLAETLSEFEDGLREVRDGMDAWRSPDLELEWEECSRGLDEALEFADRVR
Ga0207461_100074313300026929SoilVSLRRRRLPEHLEGPAREFDDLLPALERARAALTESVPGTRLPGRPLAETLSEFEDGLREVRDGMDAWRSPDVEPEWEACSRGLDEAVEFADRVRAIEGKRKNPKVTVTVL
Ga0207578_100051343300026933SoilVSLRRRRLPEHLEAPAKAFDDLLPPLEQARAALTGSVPGTRLPGRPLAETLSEFEEGL
Ga0209878_101157713300027163Groundwater SandVSLRRRRLPEHLEGAGRAFDDLLLRLGRAEAALTGSVPGTRLPGRPLAETLWEFEDGLREVRDGMDDWRSPDVELE
Ga0209846_101537833300027277Groundwater SandVILRRKRLPDHLEAPSRALDELIPSLERARAALTESVPGTRLPGRPLAGSLSEFEDGLREVRARM
Ga0207428_1094586423300027907Populus RhizosphereVSPRRRRLPEHLEAPARAFDDLLPALERARAVLTESVPGTRLPGRPLAETLSEFEEGLREVRGGMDAWRSPDLEPDWDACSRGLDESLALADRVR
(restricted) Ga0233417_1042587223300028043SedimentVLRRRRTPEQLEEPYRAFRALVPPLERAKAALTESVPGTRVPGRPLGETLYRFEEGLREV
Ga0268264_1006220053300028381Switchgrass RhizosphereVSLRRRRLPEHLEAPASAFDDLLPPLERARAALTGSVPGTRLPGRPLAETLWEFEGGLREARHGMDAWRSPDVEP
Ga0268264_1139433123300028381Switchgrass RhizosphereVLRRRRLPEELVAPASAFDALIPHLERAKAALTSSVPGTRLPGRPLAETLHEFETALGVVRDGMDAWRAPA
Ga0247818_1126025523300028589SoilVSPRRRRLPEHLEAPARAFDDLLPALERARAVLTESVPGTRLPGRPLAETLSEFEDGLREVRGGMDAWRSPDLEPEWDACSRGLGESLALADRVR
Ga0247822_1115052823300028592SoilVSPRRRRLPEHLEAPAGAFDDLLPALERARAVLTESVPGTRLPGRPLAETLSEFEDGLREVLEGMDGWRSPDLEPQWDACSRGLDESLALADRVRTQGAHPE
Ga0307295_1013264823300028708SoilVSPRRRRLPEHLVAPARAFDGLLPSLERARAVLTESVPGTRLPGRPLAETLSEFEDGLREVRGGMDAWRSPDLAPGWEAC
Ga0307293_1015047713300028711SoilVSLRRRRLPEHLEAPARAFDDLLPPLERARAALTGSVPGTRLPGRPLAETLSEFEDGLREVREGMDA
Ga0307301_1024882923300028719SoilVSPRRRRLPEHLVAPARAFDGLLPSLERARAVLTESVPGTRLPGRPLAETLSEFEEGLREVRG
Ga0307282_1019743123300028784SoilVSLRRRRLPEHLEAPARAFDDLLPPLERARAALTGSVPGTRLPGRPLAETLSEFEDGLREVRDGMDAWRSADVEPEW
Ga0307290_1003823013300028791SoilVSVRRRRLPEHLEGPARALDDLLPPLERARAALTGSVPGTRLPGRPLAETLSEFEDGLREVREGMDTWRSPDLEPEWEACSRRLDEALEFADGVR
Ga0307299_1011306313300028793SoilVSLRRRRLPEHLEAPARAFDDLLPALERARAALTGSVPGTRLPGRPLAETLSEFEDGLGEVRDGMDAWRSPDVEPEWDACSRGLDETLALADRVRTEGVQPEGFE
Ga0307287_1017201323300028796SoilVSLRRRRLTAHLEGAARAFDELLPRLGRAEAALTGSVPGTRLPGRPLAETLWEFEDGVREVRDGMDDWRSPDI
Ga0307281_1035318713300028803SoilVSPRRRRLPEHLEAPSRAFDDLLPALERARAVLTESVPGTRLTGRPLAETLSEFEDGLREVRGGMDAWRSPDLEPAWDACSRGLGESLALADRVRTEGAHPEGF
Ga0307292_1014371813300028811SoilVSLRRRRLPEHLEAPARAFDDLLPALERARAALTGSVPGTRLPGRPLAETLSEF
Ga0307296_1051799623300028819SoilVSLRRRRLPEHLEAPARAFDDVLPPLGRAKAALTGSVPGARLPGRPLAEALSEFEDGLREVRDGMDAWRSPDLEPEWDACSRGLDEALALADRVRTEG
Ga0247826_1080751913300030336SoilVSLRRRRLPAHLEGAARAFDELLPRLGRAEAALTGSVPGTRLPGRPFAETLWEFEDGLREVRDGMDDWRSPDIEPEWEVCSRGLDEALALADRVRTEGAHPE
Ga0307468_10003617413300031740Hardwood Forest SoilVSLRRRRLPEHLEAPARAFDDLLPTLERAGAALTASVPGTRLPGRPLAETLSEFEDELRELRDGMDDWRLPDVELEWEACSRGLDEALALA
Ga0310885_1074745313300031943SoilVSPRRRRLPEHLEAPARAFDDLLPALERARAVLTESVPGTRLPGRPLAETLWEFEEGLREVRGRMDAWRSPD
Ga0214473_1008941463300031949SoilVFRHRRLPEHLREAYEAFEGLVPPLERAKAALTESVPGTRLPGRPLAETLFEFEEGLREVDAGMDGWRVHEVEEVWLGASAGLAEARRLAERTRVE
Ga0326597_1002432413300031965SoilMFRRRRLPEHLDGPYRAFGAIVPPLERAKAALTESVPGTRMPGRPLAETLLEFEEGLREVAAGMDAWRTPEVEEAWAGASAGLEEARSLAERVRTEAPPPVGFEG
Ga0310906_1144770313300032013SoilVSPRRRRLPEHLEAPARAFDDLLPALERARAILTESVPGTRLPGRPLAETLSEFEEGLREVRGGMDAWR
Ga0310890_1075699223300032075SoilVSPRRRRFPEHLEEPASAFDELLPALERARSVLTESVPGTRLPGRPLAETLSEFEEGLREVRGRMDAWRSP
Ga0310895_1032928223300032122SoilVSPRRRRWPEHLEAPARAFDDLLPALERARAVLTESVPGTRLPGRPLAETLSEFEEGLREVLGRMDAWRSPDLESEWDACSRGLDGSLALADRVRTEGAHP
Ga0214471_1038718513300033417SoilVILRRKRLPDHLEAPSRALDELIPSLERARAALTESVPGARLPGRPLAESLSEFEDGLREVWPRMDGWRAPEVERAWLDAS
Ga0364946_057721_2_2413300033815SedimentVILRRKRLPDHLEAPSCAFDELIPSLERTKAALTESVPGTRLPGRPLAETLSEFEDGLREVRGRMDGWRAPEVEPAWLDA
Ga0364925_0210058_121_4413300034147SedimentVILRRKRLPDHLEAPSRALDELIPSLERARAALTESVPGTRLPGRPLAETLSEFEEGLCEVRGLMDGWRAQEVERAWLDASAGLDEALGLAERVRTEGAPPQGFEG
Ga0364929_0190740_1_2283300034149SedimentVILRRKRLPDHLEAPSRALDELIPSLERARAALTESVPGTRLPGRALAESLSEFEDGLREVRARMEGWRAPEVEQA

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.