Metagenome / Metatranscriptome Family F071476

Basic Information
Family ID	F071476
Family Type	Metagenome / Metatranscriptome
Number of Sequences	122
Average Sequence Length	86 residues
Representative Sequence	MKTIEARITKNIKEDPSIKECDIWNIEATFLDPLPDDAMRITADPGEIGVNQLEAARTDSTRTAITIRTQRKSRLQPGEVIHLGFE
Number of Associated Samples	83
Number of Associated Scaffolds	122

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	54.10 %
% of genes near scaffold ends (potentially truncated)	24.59 %
% of genes from short scaffolds (< 2000 bps)	83.61 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.83

Most Common Taxonomy
Group	Unclassified (71.311 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (23.770 % of family members)
Environment Ontology (ENVO)	Unclassified (36.066 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (73.770 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 3.51% β-sheet: 32.46% Coil/Unstructured: 64.04%
Feature Viewer

Powered by Feature Viewer

SCOP family	SCOP domain	Representative PDB	TM-score
b.43.4.1: NADPH-cytochrome p450 reductase FAD-binding domain-like	d1f20a1	1f20	0.67212
b.43.4.1: NADPH-cytochrome p450 reductase FAD-binding domain-like	d3qfta1	3qft	0.66986
b.43.4.1: NADPH-cytochrome p450 reductase FAD-binding domain-like	d1ddga1	1ddg	0.66436
b.43.4.0: automated matches	d2rc5a1	2rc5	0.65551
b.43.4.2: Ferredoxin reductase FAD-binding domain-like	d1tvca1	1tvc	0.6519

Pfam ID	Name	% Frequency in 122 Family Scaffolds
PF03631	Virul_fac_BrkB	8.20
PF03747	ADP_ribosyl_GH	5.74
PF01594	AI-2E_transport	4.92
PF09917	DUF2147	3.28
PF05532	CsbD	1.64
PF03807	F420_oxidored	1.64
PF07638	Sigma70_ECF	1.64
PF02656	DUF202	0.82
PF01145	Band_7	0.82
PF01370	Epimerase	0.82
PF01458	SUFBD	0.82
PF00005	ABC_tran	0.82
PF00702	Hydrolase	0.82
PF00690	Cation_ATPase_N	0.82
PF08808	RES	0.82

COG ID	Name	Functional Category	% Frequency in 122 Family Scaffolds
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	8.20
COG1397	ADP-ribosylglycohydrolase	Posttranslational modification, protein turnover, chaperones [O]	5.74
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	4.92
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	1.64
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	1.64
COG0474	Magnesium-transporting ATPase (P-type)	Inorganic ion transport and metabolism [P]	0.82
COG0719	Fe-S cluster assembly scaffold protein SufB	Posttranslational modification, protein turnover, chaperones [O]	0.82
COG2149	Uncharacterized membrane protein YidH, DUF202 family	Function unknown [S]	0.82
COG5654	Predicted toxin component of a toxin-antitoxin system, contains RES domain	Defense mechanisms [V]	0.82

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.31 %
All Organisms	root	All Organisms	28.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.31 %
cellular organisms	root	All Organisms → cellular organisms	28.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.31 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	28.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.31 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.82 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.82 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.82 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.31 %
Acidithiobacillia	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia	0.82 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.82 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.82 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.31 %
Acidithiobacillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales	0.82 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.82 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.31 %
Acidithiobacillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae	0.82 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.82 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.31 %
Acidithiobacillus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae → Acidithiobacillus	0.82 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.82 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.82 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_100609856	Not Available	1750	Open in IMG/M
3300001593\|JGI12635J15846_10101668	Not Available	2061	Open in IMG/M
3300001661\|JGI12053J15887_10009175	All Organisms → cellular organisms → Bacteria	5372	Open in IMG/M
3300002245\|JGIcombinedJ26739_100597100	Not Available	981	Open in IMG/M
3300003219\|JGI26341J46601_10004227	All Organisms → cellular organisms → Bacteria	4743	Open in IMG/M
3300003219\|JGI26341J46601_10114350	Not Available	776	Open in IMG/M
3300003368\|JGI26340J50214_10008099	All Organisms → cellular organisms → Bacteria	3381	Open in IMG/M
3300003368\|JGI26340J50214_10009553	All Organisms → cellular organisms → Bacteria	3098	Open in IMG/M
3300003368\|JGI26340J50214_10020252	All Organisms → cellular organisms → Bacteria	2047	Open in IMG/M
3300003505\|JGIcombinedJ51221_10110553	All Organisms → cellular organisms → Bacteria	1098	Open in IMG/M
3300004080\|Ga0062385_10452708	Not Available	781	Open in IMG/M
3300004082\|Ga0062384_100205503	Not Available	1164	Open in IMG/M
3300004092\|Ga0062389_100543661	Not Available	1317	Open in IMG/M
3300004092\|Ga0062389_101536354	Not Available	849	Open in IMG/M
3300004092\|Ga0062389_102504105	Not Available	684	Open in IMG/M
3300004152\|Ga0062386_101608120	Not Available	542	Open in IMG/M
3300005434\|Ga0070709_10399957	Not Available	1025	Open in IMG/M
3300005436\|Ga0070713_101305734	Not Available	703	Open in IMG/M
3300005548\|Ga0070665_102213865	Not Available	553	Open in IMG/M
3300005602\|Ga0070762_10139996	All Organisms → cellular organisms → Bacteria	1439	Open in IMG/M
3300005602\|Ga0070762_10474810	Not Available	816	Open in IMG/M
3300005921\|Ga0070766_10653979	Not Available	709	Open in IMG/M
3300006162\|Ga0075030_101593858	Not Available	511	Open in IMG/M
3300006175\|Ga0070712_101403643	Not Available	609	Open in IMG/M
3300006176\|Ga0070765_100798433	Not Available	892	Open in IMG/M
3300006176\|Ga0070765_101650808	Not Available	602	Open in IMG/M
3300006893\|Ga0073928_10336060	All Organisms → cellular organisms → Bacteria	1123	Open in IMG/M
3300009545\|Ga0105237_10680779	Not Available	1035	Open in IMG/M
3300010154\|Ga0127503_10007763	Not Available	525	Open in IMG/M
3300010154\|Ga0127503_10315318	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1071	Open in IMG/M
3300010154\|Ga0127503_11037925	Not Available	888	Open in IMG/M
3300010339\|Ga0074046_10017232	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5151	Open in IMG/M
3300010341\|Ga0074045_10680685	Not Available	654	Open in IMG/M
3300010343\|Ga0074044_10045119	All Organisms → cellular organisms → Bacteria	3047	Open in IMG/M
3300010379\|Ga0136449_100136994	All Organisms → cellular organisms → Bacteria	4854	Open in IMG/M
3300010401\|Ga0134121_11075338	Not Available	795	Open in IMG/M
3300010937\|Ga0137776_1344403	All Organisms → cellular organisms → Bacteria	757	Open in IMG/M
3300010937\|Ga0137776_1354964	All Organisms → cellular organisms → Bacteria	876	Open in IMG/M
3300011120\|Ga0150983_11725634	Not Available	1469	Open in IMG/M
3300011120\|Ga0150983_13209040	Not Available	705	Open in IMG/M
3300011120\|Ga0150983_13221336	Not Available	753	Open in IMG/M
3300011120\|Ga0150983_13528872	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae → Acidithiobacillus	878	Open in IMG/M
3300011120\|Ga0150983_13634272	Not Available	622	Open in IMG/M
3300011120\|Ga0150983_13658797	Not Available	621	Open in IMG/M
3300011120\|Ga0150983_14872752	Not Available	539	Open in IMG/M
3300011120\|Ga0150983_15980738	Not Available	1931	Open in IMG/M
3300012089\|Ga0153924_1100388	Not Available	585	Open in IMG/M
3300012177\|Ga0153943_1065113	All Organisms → cellular organisms → Bacteria	766	Open in IMG/M
3300012202\|Ga0137363_10259830	Not Available	1414	Open in IMG/M
3300012922\|Ga0137394_11045022	Not Available	678	Open in IMG/M
3300012989\|Ga0164305_10666186	Not Available	846	Open in IMG/M
3300013306\|Ga0163162_10944386	Not Available	974	Open in IMG/M
3300013306\|Ga0163162_13222839	Not Available	523	Open in IMG/M
3300014165\|Ga0181523_10136528	All Organisms → cellular organisms → Bacteria	1452	Open in IMG/M
3300014165\|Ga0181523_10511805	Not Available	663	Open in IMG/M
3300016404\|Ga0182037_11424485	Not Available	613	Open in IMG/M
3300020062\|Ga0193724_1057515	Not Available	819	Open in IMG/M
3300020579\|Ga0210407_10088497	All Organisms → cellular organisms → Bacteria	2341	Open in IMG/M
3300020579\|Ga0210407_10137147	Not Available	1880	Open in IMG/M
3300020579\|Ga0210407_10866571	Not Available	694	Open in IMG/M
3300020580\|Ga0210403_10899076	Not Available	698	Open in IMG/M
3300020580\|Ga0210403_11111690	Not Available	613	Open in IMG/M
3300020581\|Ga0210399_10114397	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2213	Open in IMG/M
3300020582\|Ga0210395_10372455	Not Available	1074	Open in IMG/M
3300020583\|Ga0210401_10199751	All Organisms → cellular organisms → Bacteria	1857	Open in IMG/M
3300020583\|Ga0210401_11226923	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300021046\|Ga0215015_11027838	All Organisms → cellular organisms → Bacteria	2687	Open in IMG/M
3300021170\|Ga0210400_10942361	Not Available	704	Open in IMG/M
3300021171\|Ga0210405_10472846	Not Available	984	Open in IMG/M
3300021178\|Ga0210408_11021037	Not Available	639	Open in IMG/M
3300021180\|Ga0210396_10649078	All Organisms → cellular organisms → Bacteria	915	Open in IMG/M
3300021180\|Ga0210396_10793629	All Organisms → cellular organisms → Bacteria	813	Open in IMG/M
3300021180\|Ga0210396_11276371	Not Available	612	Open in IMG/M
3300021403\|Ga0210397_10131764	Not Available	1728	Open in IMG/M
3300021405\|Ga0210387_10043175	All Organisms → cellular organisms → Bacteria	3605	Open in IMG/M
3300021405\|Ga0210387_11110248	Not Available	689	Open in IMG/M
3300021405\|Ga0210387_11712063	Not Available	532	Open in IMG/M
3300021406\|Ga0210386_11687159	Not Available	524	Open in IMG/M
3300021420\|Ga0210394_10270905	Not Available	1487	Open in IMG/M
3300021420\|Ga0210394_11728940	Not Available	523	Open in IMG/M
3300021432\|Ga0210384_11740157	Not Available	529	Open in IMG/M
3300021474\|Ga0210390_10826283	Not Available	766	Open in IMG/M
3300021477\|Ga0210398_11253894	Not Available	584	Open in IMG/M
3300021478\|Ga0210402_10239652	All Organisms → cellular organisms → Bacteria	1673	Open in IMG/M
3300021479\|Ga0210410_11838971	Not Available	500	Open in IMG/M
3300022557\|Ga0212123_10182630	All Organisms → cellular organisms → Bacteria	1576	Open in IMG/M
3300025906\|Ga0207699_11141697	Not Available	577	Open in IMG/M
3300025914\|Ga0207671_11579484	Not Available	505	Open in IMG/M
3300027565\|Ga0209219_1027449	Not Available	1410	Open in IMG/M
3300027651\|Ga0209217_1005253	All Organisms → cellular organisms → Bacteria	4312	Open in IMG/M
3300027727\|Ga0209328_10235612	Not Available	548	Open in IMG/M
3300027812\|Ga0209656_10004180	All Organisms → cellular organisms → Bacteria	9284	Open in IMG/M
3300027812\|Ga0209656_10025396	All Organisms → cellular organisms → Bacteria	3574	Open in IMG/M
3300027812\|Ga0209656_10026139	All Organisms → cellular organisms → Bacteria	3515	Open in IMG/M
3300027812\|Ga0209656_10068046	Not Available	1948	Open in IMG/M
3300027812\|Ga0209656_10160825	Not Available	1117	Open in IMG/M
3300027812\|Ga0209656_10223529	Not Available	902	Open in IMG/M
3300027884\|Ga0209275_10502288	Not Available	691	Open in IMG/M
3300028047\|Ga0209526_10345437	Not Available	998	Open in IMG/M
3300028047\|Ga0209526_10540201	Not Available	754	Open in IMG/M
3300028047\|Ga0209526_10765419	Not Available	601	Open in IMG/M
3300028746\|Ga0302233_10197709	Not Available	769	Open in IMG/M
3300028759\|Ga0302224_10320203	Not Available	624	Open in IMG/M
3300028906\|Ga0308309_10660601	Not Available	908	Open in IMG/M
3300029636\|Ga0222749_10781520	Not Available	522	Open in IMG/M
3300029999\|Ga0311339_10923463	Not Available	826	Open in IMG/M
3300030007\|Ga0311338_10629923	Not Available	1098	Open in IMG/M
3300030057\|Ga0302176_10119625	Not Available	1036	Open in IMG/M
3300030618\|Ga0311354_10620691	Not Available	1047	Open in IMG/M
3300031000\|Ga0074035_10857667	Not Available	535	Open in IMG/M
3300031525\|Ga0302326_11260369	Not Available	1011	Open in IMG/M
3300031708\|Ga0310686_110955934	All Organisms → cellular organisms → Bacteria	11475	Open in IMG/M
3300031708\|Ga0310686_117158256	Not Available	579	Open in IMG/M
3300031718\|Ga0307474_11338785	Not Available	565	Open in IMG/M
3300031754\|Ga0307475_10310381	Not Available	1267	Open in IMG/M
3300031962\|Ga0307479_11672129	Not Available	591	Open in IMG/M
3300032160\|Ga0311301_10186605	All Organisms → cellular organisms → Bacteria	3603	Open in IMG/M
3300032160\|Ga0311301_10346420	All Organisms → cellular organisms → Bacteria	2329	Open in IMG/M
3300032515\|Ga0348332_10045176	Not Available	1115	Open in IMG/M
3300032756\|Ga0315742_10692468	All Organisms → cellular organisms → Bacteria	927	Open in IMG/M
3300032756\|Ga0315742_11720457	Not Available	684	Open in IMG/M
3300032756\|Ga0315742_13082619	Not Available	537	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.26%
Host-Associated	Host-Associated	5.74%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	72.13%
Aquatic	Environmental → Aquatic	22.13%
Plants	Host-Associated → Plants	4.10%
Fungi	Host-Associated → Fungi	1.64%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	65.57%
Freshwater	Environmental → Aquatic → Freshwater	18.03%
Peat	Environmental → Terrestrial → Peat	5.74%
Thermal Springs	Environmental → Aquatic → Thermal Springs	3.28%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.46%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.64%
Mycelium	Host-Associated → Fungi → Mycelium	1.64%
Sediment	Environmental → Aquatic → Sediment	0.82%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	39.34%
Loam	Environmental → Terrestrial → Soil → Loam	23.77%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	15.57%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	5.74%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	3.28%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	2.46%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.46%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.64%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	1.64%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.82%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.82%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.82%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	29.51%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	20.49%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	15.57%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	9.02%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	5.74%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.28%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	2.46%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.46%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment	1.64%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.64%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.64%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	1.64%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.82%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.82%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	23.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	14.75%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	13.93%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	5.74%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	5.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.10%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.28%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	2.46%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.46%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.46%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.46%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	2.46%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.64%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment	1.64%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.64%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.64%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.64%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.64%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	1.64%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.82%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.82%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.82%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010937	Fumarole sediment microbial communities, Furnas, Sao Miguel, Azores. Combined Assembly of Gp0156138, Gp0156139	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012089	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ008 MetaG	Host-Associated	Open in IMG/M
3300012177	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ027 MetaG	Host-Associated	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300020062	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a1	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027565	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027651	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028746	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_1	Environmental	Open in IMG/M
3300028759	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_1	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030057	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_1	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300031000	Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Mineral C1 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032756	Forest Soil Metatranscriptomics Site 2 Humus Litter Mineral Combined Assembly	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1006098562	3300000364	Soil	MKTIEARITKNIKEDPSVEACDIWNIEATFLDPLPSNAMGITADPIEIGVEQIAXARMDGTRTAITIRTHKKSPLQPGEMIXXGFE*
JGI12635J15846_101016684	3300001593	Forest Soil	MKIIKALVTKNIKEDPSIEECDIWNIQATFLDPLPQDAMGLATDPVEIGVKQLEAARTDSTRTAITIRTQQESPLRPGEVIHVSFE*
JGI12053J15887_100091753	3300001661	Forest Soil	MKMIEARVTKISKEDPSIEECDIWNIEATFLNTLPENAMCITADPCEIGVDQLEAARTDSTRTALTIRTQQKSRLEPGEVIHLAFE*
JGIcombinedJ26739_1005971001	3300002245	Forest Soil	MKIIKALVTKNIKEDPSIEECDIWNIQATFLDPLPQDAMGLATDPVEIGVKQLEAARTDSTRTAITIRTQQKSPLRPGEVIHVSFE*
JGI26341J46601_100042276	3300003219	Bog Forest Soil	MKTIQARVTKNIKEDPSVEECDIWNIEATLLETLPDDAMRITTDPAEIGVSQLEEARADSTRSSITIRTQSKSRLQPGEVIHLGYQQS*
JGI26341J46601_101143502	3300003219	Bog Forest Soil	MKTIEARITKNIKEDPSIAECDIWNIEATFLAPLPGDAIRIAADPEEIGVQQLEVARTDGTRTAITIRTQQKSRLQPGETIHVGFE*
JGI26340J50214_100080991	3300003368	Bog Forest Soil	MKTIEARITKNIKEDPSIAECDIWNIEATFLAPLPGDAIRIAADPEEIGVQQLEVARTDGTRTAITIRTQQKSRLQPGETIHVNFE*
JGI26340J50214_100095534	3300003368	Bog Forest Soil	MKTIEARITKNIKEDPSIEECDIWNIEATFLDPLPDDAMRITADPGEIGVNQLEAARTDSTRTVVTIRTQRKSRLQPGEVIHLGFE*
JGI26340J50214_100202522	3300003368	Bog Forest Soil	MKTIQARVTKNIKEDPSVEECDIWNXEATXLETLPDDAMRITTDPAEIGVSQLEEARADSTRSSITIRTQSKSRLQPGEVIHLGYQQS*
JGIcombinedJ51221_101105532	3300003505	Forest Soil	MKTIQARVTKNIKEDPSVEECDIWNIEATFLETLPDDAMRITTDPAEIGVNQLEEARADSTRSSITIRTQSKSRLQPGEVI
Ga0062385_104527082	3300004080	Bog Forest Soil	MKTIQARVTKNIKEDPSVEECDIWNIEATFLERLPDDAMRITTDPAEIGVNQLEEARADSMRSSITIRTQSKSRLQPGEVIHLGYQQS*
Ga0062384_1002055032	3300004082	Bog Forest Soil	MKTIEARVIRNIKEQPGIEECNIWNIEATFLDNPPREAMSFTTDPLEIGVEQIAQARTDSSRTAITIRTLCKSRLQPGETIHLSFD*
Ga0062389_1005436612	3300004092	Bog Forest Soil	MKTIEARVTRNIKEQPGIEECNIWNIEATFLDNPPREAMSFTTDPLEIGVEQIAQARTDSSRTAITIRTLCKSRLQPGETIHLSFD*
Ga0062389_1015363542	3300004092	Bog Forest Soil	MKTIEARVIRNIKEQPGIEECNIWNIEAAFLDNPPHEAMSFITDPLEIGVKQIAQARTDSSRTAITIRT
Ga0062389_1025041051	3300004092	Bog Forest Soil	MKIIEARITKNIKEDPSIEECDIWNIEATFLNPLPSEATGLTADPVEIGVRQLETARIDSTRTTVTIRTQKKSPLRPGEMIHLGFE*
Ga0062386_1016081201	3300004152	Bog Forest Soil	IKEDPSVEECDIWNIEATFLETLPNDAMRITTDPAEIGVDQLEEARVDSTRSSITIRTQSRSRLQPGEVIHLGYQQS*
Ga0070709_103999571	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MKTIEARITKNIKEDPSVEACDIWNIEATFLDPLPSNAMGVTADPIEIGVEQIAAARMDGTRTAITIRTHKKSPLQPGEMIHLGFK*
Ga0070713_1013057341	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	NIKEDPSVEACDIWNIEATFLDPLPSNAMGVTADPIEIGVEQIAAARMDGTRTAITIRTHKKSPLQPGEMIHLGFK*
Ga0070665_1022138652	3300005548	Switchgrass Rhizosphere	VGRKDKTKDSEMKTIEARVTKNIKEDPSIEECNVWNIQATFLNPLPKDALVINTDPVEIGVRQLEAARTDSTRTAITIRTEKKSRLQPGEMIHLRFE*
Ga0070762_101399961	3300005602	Soil	MKTIQARVTKNIKEDPSVEECDIWNIEATFLETLPDDAMRITTDPAEIGVNQLEEARADSTRSSITIRTQSKSRLQPGEVIHLGY*
Ga0070762_104748101	3300005602	Soil	MKTIEARITTNIKEDPSIEECDIWNIQATFLDPLPSDATDIMADPIEIGVKQLEAARTDGTRTAVTIRTQQKSRLQPGELIHLGFEQE*
Ga0070766_106539792	3300005921	Soil	MKTIHARVTKNIKEDPSIEECDIWNVEATFLDPLPEDAIHITADPGEIGVNQLEAARTDSTRTAITIRTQRKSRLQPGEVIHLRFE*
Ga0075030_1015938581	3300006162	Watersheds	MKTIQARVTKNIKEDPSVEECDIWNIEATFLETLPNDAMRITTDPAEIGVNQLEEARADSTRSSITIRTQSKSRLQPGDVIHLGYQQS*
Ga0070712_1014036431	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MKIIEARITKNIKEDPSIEECDIWNVQATFLNPLPSEATGLTADPIEIGVTQLETVRMDSTRTTVTIRTQKKSPLRPGEMIHLGFE*
Ga0070765_1007984332	3300006176	Soil	MKTIQARVTKNIKEDPSIEECDIWNIEATFLDALPDGATQITADPVEIGVNQLEEARADSTRTSVTIRTQAKSRLQPGAVIHLSYQES*
Ga0070765_1016508081	3300006176	Soil	MKTIEARVTKNIKEDPSIEECNVWNIEATFLDPLPSNAVHITADPTEIGVEQLEAARTDSTWTAITIRTQCKSRLCPG
Ga0073928_103360602	3300006893	Iron-Sulfur Acid Spring	MKTIQARVTKNIKEDPSVEQCDIWNIEATFLETLPDDAMRITTDPAEIGVNQLEEARADSTRSSITIRTQSKSRLQPGEVIHLGYQQS*
Ga0105237_106807792	3300009545	Corn Rhizosphere	MKTIEARITKNIKEDPSVEACDIWNIEATFLDPLPSNAMGVTADPIEIGVEQIAAARMDGTRTAITIRTHKKSPLQ
Ga0127503_100077631	3300010154	Soil	MKTIQARVTKNIKEDPSIEECDIWNVEATFLDPLPEDAMHITADPGEIGVNQLEAARTDSTHTAITIRTQRKSRLQPGEVIHLRFE*
Ga0127503_103153181	3300010154	Soil	MKTIEARITKNIKEDPSIEQCDIWNIQATFLDRLPDDATCITADPDEIGVDQLETARTDSTRTAVTIRTQRKSRLAPGEVIHLGFQ*
Ga0127503_110379251	3300010154	Soil	MKTIHARVTKNIKEDPSIEKCNIWNIQATFLDPLPLDAVHITADPVEIGVNQLEIARTDATRTAITIRTQCKSRLQPGEVIHLGFE*
Ga0074046_100172322	3300010339	Bog Forest Soil	MKTIEARITKNIKEDPSIEECDIWNIEATFLDPLPDDAMRITADPGEIGVNQLEAARTDSTRTVVTIRTQRKSRLQPGEVLHLGLE*
Ga0074045_106806851	3300010341	Bog Forest Soil	KNIKEDPSVEECNIWNIEATFLEALPDDAMRITTDPAEIGVNQLEEARVDSTRSSITIRTQSKSRLQPGEVIHLGYQPS*
Ga0074044_100451191	3300010343	Bog Forest Soil	SIAECDIWNIEATFLAPLPGDAIRIAADPEEIGVQQLEVARTDGTRTAITIRTQQKSRLQPGETIHVNFE*
Ga0136449_1001369943	3300010379	Peatlands Soil	MYMTKEPAHMKTIEARVTKNIKEDPSIQECDIWNIQAMFLNALPIDAKHITTDPIEIGVVQLEAGRTDSMRTAITVRTQGKSRLQPGELIHLGFE*
Ga0134121_110753381	3300010401	Terrestrial Soil	MKTIEARITKNIKEDPSVEACDIWNIEATFLDPLPSNAMGVTADPIEIGVEQIAAARMDGTRTASTSRTHKKSPLQPGEMIHLGFK*
Ga0137776_13444032	3300010937	Sediment	MKTIQARVTKNIKEDPSIEECDIWNVQATFLNPLPSDVTRITADPGEIGVHQLETPRTDCTRTAITIRTQQKSRLQPGETIHLGFE*
Ga0137776_13549641	3300010937	Sediment	MKTIEARVTRNIKEEPSVEECNIWNIEASFLDTLRGDAMRLSAGPVEIGVYQLGAARMDSTRTAITIRTQRKSR*
Ga0150983_117256342	3300011120	Forest Soil	MVIGSTAPGFDFTDRQALVTKNIKEDPSIEECDIWNIQATFLDPLPQDAMGLATDPVEIGVKQLEAARTDSTRTAITIRTHQKSPLRPGEVIHVSFE*
Ga0150983_132090401	3300011120	Forest Soil	MKTIEARITKNIKEDPSIEACDIWNIEATFLDPLPSNATGITADPIEIGVEQIAAARMDGTRTAITIRTQQKSRLQPGEMIHLAFK*
Ga0150983_132213362	3300011120	Forest Soil	MKTIKALVTKNIKEDPGIEECDIWNIQATFLDPLPHDATGITTDPVEIGVNQLEAARTDSTGTAITIRTQQKSRLHPGEVIHVSFE*
Ga0150983_135288722	3300011120	Forest Soil	MKTIQARVTRNIKEQPGIEECNIWNIQATFLDNPPDEAMSFTTDPLEIGVEQIAQARTDSSRTAITIRTLCKSRLQPGETIHLSFD*
Ga0150983_136342721	3300011120	Forest Soil	MKTIEARITKNIKEDPSVEACDIWNIEATFLDLLPSDAMGITADPIEIGVEQIAAARMDGTRTAITIRTHKKSRLQPGEMIHLGFE*
Ga0150983_136587971	3300011120	Forest Soil	MKTIQARVTKNIKEDPSIEECDIWNIEATFLDALPNGATQITADPVEIGVNQLEEARADSTRTSVTIRTQAKSRLQPGAVIHLSYQES*
Ga0150983_148727521	3300011120	Forest Soil	MKTIHARVTKNIKEDPSIEECNIWNIQATFLDPLPLDAVHITADPVEIGVEQLEITRTDRTRTAITIRTQCKSRLQPGEVIHLGFE*
Ga0150983_159807384	3300011120	Forest Soil	MKTIHARVTKNIKEDPSIEECNIWNIQATFLDPLPLGAVHITADPVEIGVNQLEIARTDGTRTAITIRTQCKSRLQPGEVIHLGFE*
Ga0153924_11003881	3300012089	Attine Ant Fungus Gardens	MKTIEARVTKNIKEDPSNEECDIWNVQATFLNSLPSDAIRITADPGEIGVHQLETPRTDSTRTAITIRTQQKSRLQPGETIHLGFE*
Ga0153943_10651131	3300012177	Attine Ant Fungus Gardens	MKTIEARVTKNIKEDPSIEECDIWNVQATFLNPLPSDAIRITADPGEIGVHQLETPRTDSTRTAITIRTQQKSRLQPGETIHLGFE*
Ga0137363_102598303	3300012202	Vadose Zone Soil	MKTIQARVTKNIKEDPSIEECDIWNIEATFLDALPDGATQITADPVEIGVNQLEEARTDSTRTSVTIRTQAKSRLQPGAVIHLSYQES*
Ga0137394_110450221	3300012922	Vadose Zone Soil	MKTIEARITRNIKEDPSVEACEIWNIEATFLDPLPSNATGITADPIEIGVEQIAAARMDGTRTAITIRTKKKSRLQPGEMIHLGFE*
Ga0164305_106661861	3300012989	Soil	MKTIEARVTKNIKEDPSIEECNVWNIQATFLNPLPKDALVINTDPVEIGVRQLEAARTDSTRTAITIRTETKSRLQPGEMIHLRFE*
Ga0163162_109443862	3300013306	Switchgrass Rhizosphere	MKTIEARITKNIKEDPSVEACDIWNIEATFLDPLPSNAMGVTADPIEIGVEQIAAARMDGTRTAITIRTHKKS
Ga0163162_132228391	3300013306	Switchgrass Rhizosphere	MKTIEARVTKNIKEDPSIEECNVWNIQATFLNPLPNDALVISTDPVEIGVRQLEAARTDSTRTAITIRTEKKSRLQPGEMIHLRFE*
Ga0181523_101365282	3300014165	Bog	MKTVRARVTKNIKEEPSNEAFDVWNIEATFLDKIPEDAVRITADPDEIGVNQLEAARTDSTRAVITIRTDRKSRFQPGEVIHLTFE*
Ga0181523_105118051	3300014165	Bog	MKTIQARVTKNIKEDPSVEECDIWNIEATFLEALPDDAMRITTDPAEIGVNQLEEARVDSTRSSITIRTESKSRLQPGEVIHLGYQQS*
Ga0182037_114244853	3300016404	Soil	KPRPSHMKTIEAQVTKNIKEDPSNEDFDVWNIEATFLDKLPQEVICITADPVEMQVDQVAAARTDKTRTTVTIRTRRKSGLQAGDVIHLSFE
Ga0193724_10575151	3300020062	Soil	MKTIEARITKNIKEDPSVEACEVWNIEATFLDPLPSNAVGITADPIEIGVEQIAAARMDGTRTAITIRTKKKSRLQPGEMIHLGFE
Ga0210407_100884973	3300020579	Soil	MKTIQARVTKNIKEDPSVEECDIWNIEATFLETLPDDAMRITTDPAEIGVNQLEEARADSTRSSITIRTQSKSRLQPGEVIHLGY
Ga0210407_101371474	3300020579	Soil	MKTIHARVTKNIKEDPSIEECNIWNIQATFLDPLPLGAVHITADPVEIGVNQLEIARTDGTRTAITIRTQCKSRLQPGEVIHLGFE
Ga0210407_108665711	3300020579	Soil	MKTIHARVTKNIKEDPSIEECNIWNIQATFLDPLPLDAVHITADPVEIGVEQLEITRTDRTRTAITIRTQCKSRLQPGEVIHLGFE
Ga0210403_108990761	3300020580	Soil	KSKGPAYMKTIQARVTKNIKEDPSVEECDIWNIEATFLETLPDDAMRITTDPAEIGVKQLEEARADSTRSSITIRTQSKSRLQPGEVIHLGY
Ga0210403_111116901	3300020580	Soil	DPSIEECNIWNIQATFLDPLPLGAVHITADPVEIGVNQLEIARTDGTRTAITIRTQCKSRLQPGEVIHLGFE
Ga0210399_101143974	3300020581	Soil	MKTIQARVTKNIKEDPSVEECDIWNIEATFLETLPDDAMRITTDPAEIGVKQLEEARADSTRSSITIRTQSKSRLQPGEVIHLGY
Ga0210395_103724552	3300020582	Soil	MKTIQARVTRNIKEQPGIEECNIWNIQATFLDNPPDEAMSFTTDPLEIGVEQIAQARTDSSRTAITIRTLCKSRLQPGETIHLSFD
Ga0210401_101997511	3300020583	Soil	LYMKTIQARVTKNIKEDPSVEECDIWNIEATFLETLPDDAMRITTDPAEIGVKQLEEARADSTRSSITIRTQSKSRLQPGEVIHLGY
Ga0210401_112269231	3300020583	Soil	MKTIEARITKNIKEDPSIEACDIWNIEATFLDPLPSNATGITADPIEIGVEQIAAARMDGTRTAITIRTQQKSRLQPGEMIHLAFK
Ga0215015_110278382	3300021046	Soil	MKTIQARVTKNIKEDPSIEECDIWNIEATFLDPLPDDAMRITPDPGEFGVNQLEVARTDSTRTAITIRTQRKSRLQPGEVIHLGLE
Ga0210400_109423611	3300021170	Soil	MKTIEARITKNIKEDPSVEACDIWNIEATFLDPLPSNATGITADPTEIGVEQIAAARIDGTRTAITIRTQQKSRLQPGEMIHLAFK
Ga0210405_104728461	3300021171	Soil	MKTIEARITKNIKEDPSIEACDIWNIEATFLDPLPSNATGITADPTEIGVEQIAAARIDGTRTAITIRTQQKSRLQPGEMIHLAFK
Ga0210408_110210372	3300021178	Soil	MKTIEARITKNIKEDPSIETCDIWNIEATFLDPLPSNATGITADPTEIGVEQIAAARIDGTRTAITIRTQQKSRLQPGEMIHLAFK
Ga0210396_106490781	3300021180	Soil	MKTIEARVIRNIKEQPGIEECNIWNIQATFLDNPPDEAMSFTTDPLEIGVEQIAQARTDSSRTAITIRTLCKSRLQPGETIHLSFD
Ga0210396_107936292	3300021180	Soil	MKTIQARVTKNIKEDPSVEECDIWNIEATFLETLPDDAMRITTDPAEIGVNQLEEARADSTRSSITIRTQSKSRLQPGEVIHLGYQQSS
Ga0210396_112763711	3300021180	Soil	MKTIHARVTKNIKEDPSIEECDIWNIQATFLDPLPLDAVHITADPVEIGVEQLEITRTDRTRTAITIRTQCKSRLQPGEVIHLGFE
Ga0210397_101317642	3300021403	Soil	MKTIEARVIRNIKEQPGIEECNIWNIQATFLDSLPQEAVSFTTDPLEIGVEQIAQARTDSSRTAITIRTLCKSRLQPGETIHLSFD
Ga0210387_100431754	3300021405	Soil	MKTIEARVTRNIKEQPGIEECNIWNIQATFLDSLPHDAIGLTADPVEIGVEQIAQARMDSSRTAITIRTQCKSRLQPGETIHLGFE
Ga0210387_111102481	3300021405	Soil	MKTIHARVTKNIKEDPSIEECNIWNIQATFLDPLPLDAVHITADPVEIGVNQLELARTDGTRTAITIRTRCKSRLQPGEVIHLGFE
Ga0210387_117120632	3300021405	Soil	MKTIEARVTKNIKEQPGYEECNIWNIEATFLDSLPHEAMHLTAEPVEIGVEQIAPARTDISRSTVTIRTYCKSSLQPGEMIHLGFE
Ga0210386_116871591	3300021406	Soil	MKTIQARVTRNIKEQPGIEECNIWNIQATFLDSLPQEAVSFTTDPLEIGVEQIAQARTDSSRTAITIRTLC
Ga0210394_102709052	3300021420	Soil	MKTIEARITKNIKEDPSVEACDIWNIEATFLDLLPSDAMGITADPIEIGVEQIAAARMDGTRTAITIRTHKKSRLQPGEMIHLGFE
Ga0210394_117289401	3300021420	Soil	DPSVEACDIWNIEATFLDPLPSNATGITADPTEIGVEQIAAARIDGTRTAITIRTQQKSRLQPGEMIHLAFK
Ga0210384_117401571	3300021432	Soil	MKIIEARITKNIKEDPSVEECDIWNIEATFLDPLPSDATRITADPIEIGVRQLEAARTDSTRTAVTIRTQKKSRLLPGEMIHLGFEQSAVV
Ga0210390_108262831	3300021474	Soil	MKTIQARVTKNIKEDPSVEECDIWNIEATFLETLPDDAMRITTDPAEIGVKQLEEARADSTRSSITIRTQSKSRLQPVEVIHLGY
Ga0210398_112538942	3300021477	Soil	MKTIEARVTRNIKEQPGIEECNIWNIQATFLDSLPQEAVSFTTDPLEIGVEQIAQARTDSSRTAITIRTLCKSRLQPGETIHLSFD
Ga0210402_102396524	3300021478	Soil	AGILSRPNLNEIVHKSKGPAYMKTIQARVTKNIKEDPSVEECDIWNIEATFLETLPDDAMRITTDPAEIGVKQLEEARADSTRSSITIRTQSKSRLQPGEVIHLGY
Ga0210410_118389711	3300021479	Soil	RPNLNEIVHKSKGPAYMKTIQARVTKNIKEDPSVEECDIWNIEATFLETLPDDAMRITTDPAEIGVKQLEEARADSTRSSITIRTQSKSRLQPGEVIHLGY
Ga0212123_101826301	3300022557	Iron-Sulfur Acid Spring	MKTIQARVTKNIKEDPSVEQCDIWNIEATFLETLPDDAMRITTDPAEIGVNQLEEARADSTRSSITIRTQSKSRLQPGEVIHLGYQQS
Ga0207699_111416972	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MKTIEARITKNIKEDPSVEACDIWNIEATFLDPLPSNAMGVTADPIEIGVEQIAAARMDGTRTAITIRTHKKSPLQPGEMIHLGFK
Ga0207671_115794841	3300025914	Corn Rhizosphere	MKTIEARVTKNIKEDPSIEECNVWNIQATFLHPLPKDALVINTDPVEIGVRQLEAARTDSTRTAITIRTEKKSR
Ga0209219_10274493	3300027565	Forest Soil	MKTIKALVTRNIKEDPSIEECDIWNIQATFLDLLPQDAMGLATDPVEIGVKQLEAARTDSTRTAITIRTQQESPLRPGEVIHVSFE
Ga0209217_10052536	3300027651	Forest Soil	MKTIQARVTKNIKEDPSIEECDIWNVEATFLDPLPEDAMHITADPGEIGVNQLEAARTDSTRTAITIRTQRKSRLQPGEVIHLRFE
Ga0209328_102356121	3300027727	Forest Soil	MKTIQARVTKNIKEDPSIEECDIWNIEATFLDALPDGATQISADPVEIGVNQLEEARADSTRTSVTIRTQAKSRLQPGAVIHLSYQES
Ga0209656_1000418016	3300027812	Bog Forest Soil	MKTIEARITKNIKEDPSIEECDIWNIEATFLDPLPDDAMRITADPGEIGVNQLEAARTDSTRTVVTIRTQRKSRLQPGEVLHLGLE
Ga0209656_100253961	3300027812	Bog Forest Soil	MKTIEARITKNIKEDPSIAECDIWNIEATFLAPLPGDAIRIAADPEEIGVQQLEVARTDGTRTAITIRTQQKSRLQPGETIHVNFE
Ga0209656_100261392	3300027812	Bog Forest Soil	MKTIEARITKNIKEDPSIKECDIWNIEATFLDPLPDDAMRITADPGEIGVNQLEAARTDSTRTAITIRTQRKSRLQPGEVIHLGFE
Ga0209656_100680462	3300027812	Bog Forest Soil	MKTIQARVTKNIKEDPSVEECDIWNIEATLLETLPDDAMRITTDPAEIGVSQLEEARADSTRSSITIRTQSKSRLQPGEVIHLGYQQS
Ga0209656_101608253	3300027812	Bog Forest Soil	IVHKSKGPAYMKTIQARVTKNIKEDPSVEECDIWNIEATFLETLPDDAMRITTDPAEIGVNQLEEARADSTRSSITIRTQSKSRLQPGEVIHLGYQ
Ga0209656_102235291	3300027812	Bog Forest Soil	LSGLNLNEIVHKSKGPAYMKTIQARVTKNIKEDPSVEECDIWNIEATFLERLPDDAMRITTDPAEIGVNQLEEARANSTRSSITIRTQSKSRLQPGEVIHLGYQQS
Ga0209275_105022881	3300027884	Soil	MKTIQARVTKNIKEDPSVEECDIWNIEATFLETLPDDAMRITTDPAEIGVNQLEEARTDGTRTSITIRTERKSRLEPGAVIHLSYQQS
Ga0209526_103454372	3300028047	Forest Soil	MKTIRARVTKNIKEDPSIEECDIWNVEATFLDPLPEDAMHITADPGEIGVNQLEAARTDSTRTAITIRTQRKSRLQPGEVIHLRFE
Ga0209526_105402012	3300028047	Forest Soil	MKIIKALVTKNIKEDPSIEECDIWNIQATFLDPLPQDAMGLATDPVEIGVKQLEAARTDSTRTAITIRTQQKSPLRPGEVIHVSFE
Ga0209526_107654192	3300028047	Forest Soil	MKIIEARITKNIKEDPSVEECDIWNIQATFLDPLPSDATRITADPIEIGVRQLEAARTDSTRTAITIRTQKKSRLLPGEMIHLGFEQSAVV
Ga0302233_101977091	3300028746	Palsa	MKTIEARITTNIKEDPSIEQCDIWNIQATFLDPLPSDAIRIIADPIEIGVKQLESARMDKTRTAITIRTQQKSRLQPGEMIHLGFEQDS
Ga0302224_103202031	3300028759	Palsa	EDPSIEQCDIWNIQATFLDPLPSDAIRIIADPIEIGVKQLESARMDKTRTAITIRTQQKSRLQPGEMIHLGFEQDS
Ga0308309_106606011	3300028906	Soil	MKTIEARVTRNIKEQPGIVECNIWNIQATFLDSLPDDVMRLTADPVEIGVEQIAPARTDSSRTEINIRTQCKSRLQPGETIHLGFE
Ga0222749_107815201	3300029636	Soil	TIQARVTKNIKEDPSIEECDIWNVEATFLDPLPEDAMHITADPGEIGVNQLEAARTDSTRTAITIRTQRKSRLQPGEVIHLRFE
Ga0311339_109234632	3300029999	Palsa	MNREIDGTLMKTIEARVIKNIKEEPSNEHCDVWNVEATFLDKIPDDTNRILADPHELQVDQIEGARTDCTRTSVTIRTQRKSGLEPGDVIHLRLD
Ga0311338_106299232	3300030007	Palsa	MKTIEARITTNIKEDPSIEECDVWNIQATFLDPLPSDATDIMADPIEIGVKQLEAARTDRTRTAVTIRTQRKSRLQPGELIHLGFEQE
Ga0302176_101196251	3300030057	Palsa	MKTIEARITTNIKEDPSIEECDIWNIQATFLDPLPSDATQITTDPIEIGVKQLEMARTDRTRTAVTIRTQRKSRLQPGELIHLGFEQE
Ga0311354_106206913	3300030618	Palsa	DPSIEECDVWNIQATFLDPLPSDATDIMADPIEIGVKQLEAARTDRTRTAVTIRTQRKSRLQPGELIHLGFEQE
Ga0074035_108576671	3300031000	Soil	SLFSLPFDPSVEQCDIWNIEATFLETLPDDAMRITTDPAEIGVNQLEEARADSTRSSITIRTQSKSRLQPGEVIHLGYQQSS
Ga0302326_112603693	3300031525	Palsa	KEDPSIEECDVWNIQATFLDPLPSDATDIMADPIEIGVKQLEAARTDRTRTAVTIRTQRKSRLQPGELIHLGFEQE
Ga0310686_11095593413	3300031708	Soil	MKTIEARVIKNIKEDPSVEECNIWNIEASFLDTLPGDAMRMTADPVEIGVDQLGAARMDSTRTAITIRTQRKSRLMPGELIHLGFE
Ga0310686_1171582561	3300031708	Soil	MKTIQARVTKNIKEDPSVEECDIWNIEATFLETLPDDARRITTDPAEIGVNQLEEARADSTRSSITIRTQSKSRLQPGEVIHLGYQQS
Ga0307474_113387851	3300031718	Hardwood Forest Soil	MKTIHARVTKNIKEDPSIEECNIWNIQATFLDPLPLDAVHITADPVEIGVDQLEITRTDRTRTAITIRTQCKSRLQPGEVIHLGFE
Ga0307475_103103812	3300031754	Hardwood Forest Soil	MKTIQARVTKNIKEDPSIEECDIWNIEATFLDALPDDATQITADPVEIGVNQLEEARADGTRTSVTIRTQAKSRLQPGAVIHLSYQES
Ga0307479_116721291	3300031962	Hardwood Forest Soil	RVTKNIKEDPSIEECDIWNIEATFLDALPDDATQITADPVEIGVNQLEEARADGTRTSVTIRTQAKSRLQPGAVIHLSYQES
Ga0311301_101866053	3300032160	Peatlands Soil	MTKEPAHMKTIEARVTKNIKEDPSIQECDIWNIQAMFLNALPIDAKHITTDPIEIGVVQLEAGRTDSMRTAITVRTQGKSRLQPGELIHLGFE
Ga0311301_103464204	3300032160	Peatlands Soil	MKTIQARVTKNIKEDPSVEECDIWNIEATFLETLPDDAMRITTDPAEIGVNQLEEARADSTRSSITIRTQSKSRLQPGEVIHLGYQQS
Ga0348332_100451761	3300032515	Plant Litter	HAWSGSRFQFKSEGGLDKGHAHMKTIEARVIKNIKEDPSVEECNIWNIEASFLDTLPGDAMRMTADPVEIGVDQLGAARMDSTRTAITIRTQRKSRLMPGELIHLGFE
Ga0315742_106924682	3300032756	Forest Soil	MKTIEARITKNIKEDPSIETCNIWNIEATFLDPLPSNATGLTADPIEIGVEQIAAARMDGTRTAITIRTQQKSRLQPGEKIHLAFK
Ga0315742_117204572	3300032756	Forest Soil	EARITTNIKEDPSIEECDIWNIQATFLDPLPSDATEIMADPIEIGVKQLEAARTDRTRTAVTIRTQQKSRLQPGELIHLGFDQE
Ga0315742_130826191	3300032756	Forest Soil	MKTMKALVTKNIKEDPSIEECDIWNVQATFLDPLPYEATGITADPVEIGVNQLEAARTDSTRTAITIRTRQKSRLQPGEVIHVSFE

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.83
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.83
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F071476

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign