Metagenome / Metatranscriptome Family F071533

Basic Information
Family ID	F071533
Family Type	Metagenome / Metatranscriptome
Number of Sequences	122
Average Sequence Length	45 residues
Representative Sequence	MSRKNSQNNSRRKSRNKSRINRLRPLAGLLAAGLSLPGLAAA
Number of Associated Samples	104
Number of Associated Scaffolds	122

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	90.16 %
% of genes from short scaffolds (< 2000 bps)	83.61 %
Associated GOLD sequencing projects	98
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.26

Most Common Taxonomy
Group	Bacteria (63.934 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (22.951 % of family members)
Environment Ontology (ENVO)	Unclassified (25.410 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (56.557 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 48.57% β-sheet: 0.00% Coil/Unstructured: 51.43%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 122 Family Scaffolds
PF13469	Sulfotransfer_3	20.49
PF02518	HATPase_c	10.66
PF00108	Thiolase_N	1.64
PF00903	Glyoxalase	1.64
PF01522	Polysacc_deac_1	0.82
PF05569	Peptidase_M56	0.82
PF13414	TPR_11	0.82
PF01610	DDE_Tnp_ISL3	0.82
PF01551	Peptidase_M23	0.82
PF08818	DUF1801	0.82
PF02371	Transposase_20	0.82
PF08534	Redoxin	0.82
PF06964	Alpha-L-AF_C	0.82
PF04072	LCM	0.82
PF00685	Sulfotransfer_1	0.82
PF13011	LZ_Tnp_IS481	0.82
PF00578	AhpC-TSA	0.82
PF07681	DoxX	0.82

COG ID	Name	Functional Category	% Frequency in 122 Family Scaffolds
COG0183	Acetyl-CoA acetyltransferase	Lipid transport and metabolism [I]	1.64
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	0.82
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.82
COG3315	O-Methyltransferase involved in polyketide biosynthesis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.82
COG3464	Transposase	Mobilome: prophages, transposons [X]	0.82
COG3534	Alpha-L-arabinofuranosidase	Carbohydrate transport and metabolism [G]	0.82
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.82
COG4270	Uncharacterized membrane protein	Function unknown [S]	0.82
COG4430	Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family	Function unknown [S]	0.82
COG5646	Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis)	Posttranslational modification, protein turnover, chaperones [O]	0.82
COG5649	Uncharacterized conserved protein, DUF1801 domain	Function unknown [S]	0.82

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	63.93 %
Unclassified	root	N/A	36.07 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	63.93 %
Unclassified	root	N/A	36.07 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	63.93 %
Unclassified	root	N/A	36.07 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.07 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	9.02 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.07 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	7.38 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.82 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.07 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	5.74 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.82 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.07 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4.10 %
unclassified Terriglobales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales	1.64 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.82 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.07 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	1.64 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	0.82 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	0.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.82 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.07 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	1.64 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	0.82 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	0.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.82 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.82 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10112184	Not Available	1142	Open in IMG/M
3300001082\|JGI12664J13189_1003222	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	1496	Open in IMG/M
3300001593\|JGI12635J15846_10076465	All Organisms → cellular organisms → Bacteria	2461	Open in IMG/M
3300001593\|JGI12635J15846_10274318	All Organisms → cellular organisms → Bacteria	1069	Open in IMG/M
3300001867\|JGI12627J18819_10420364	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300005332\|Ga0066388_103493784	All Organisms → cellular organisms → Bacteria	802	Open in IMG/M
3300005434\|Ga0070709_10727085	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	774	Open in IMG/M
3300005533\|Ga0070734_10000243	All Organisms → cellular organisms → Bacteria	143436	Open in IMG/M
3300005542\|Ga0070732_10197878	All Organisms → cellular organisms → Bacteria	1201	Open in IMG/M
3300005569\|Ga0066705_10618272	Not Available	662	Open in IMG/M
3300005602\|Ga0070762_11258724	Not Available	513	Open in IMG/M
3300005610\|Ga0070763_10466828	All Organisms → cellular organisms → Bacteria	718	Open in IMG/M
3300005921\|Ga0070766_10587443	Not Available	747	Open in IMG/M
3300005921\|Ga0070766_11101187	Not Available	548	Open in IMG/M
3300005995\|Ga0066790_10264850	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	733	Open in IMG/M
3300006050\|Ga0075028_100185886	All Organisms → cellular organisms → Bacteria	1115	Open in IMG/M
3300006052\|Ga0075029_100007359	All Organisms → cellular organisms → Bacteria → Proteobacteria	6058	Open in IMG/M
3300006086\|Ga0075019_10063329	All Organisms → cellular organisms → Bacteria	2095	Open in IMG/M
3300006102\|Ga0075015_100291129	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	896	Open in IMG/M
3300006162\|Ga0075030_100459896	All Organisms → cellular organisms → Bacteria	1013	Open in IMG/M
3300006173\|Ga0070716_101699565	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300006174\|Ga0075014_100736652	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	577	Open in IMG/M
3300006176\|Ga0070765_101231608	All Organisms → cellular organisms → Bacteria	707	Open in IMG/M
3300007982\|Ga0102924_1354592	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300009525\|Ga0116220_10116874	All Organisms → cellular organisms → Bacteria	1135	Open in IMG/M
3300009683\|Ga0116224_10160432	Not Available	1082	Open in IMG/M
3300009700\|Ga0116217_10813448	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300009839\|Ga0116223_10779712	Not Available	547	Open in IMG/M
3300010048\|Ga0126373_11375707	All Organisms → cellular organisms → Bacteria	771	Open in IMG/M
3300010379\|Ga0136449_101783219	Not Available	922	Open in IMG/M
3300012948\|Ga0126375_12084480	Not Available	503	Open in IMG/M
3300012971\|Ga0126369_10085470	All Organisms → cellular organisms → Bacteria	2812	Open in IMG/M
3300012971\|Ga0126369_10712031	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1082	Open in IMG/M
3300014155\|Ga0181524_10202464	All Organisms → cellular organisms → Bacteria	970	Open in IMG/M
3300014493\|Ga0182016_10134240	Not Available	1690	Open in IMG/M
3300016357\|Ga0182032_10291808	All Organisms → cellular organisms → Bacteria	1284	Open in IMG/M
3300016371\|Ga0182034_10898086	All Organisms → cellular organisms → Bacteria	762	Open in IMG/M
3300016422\|Ga0182039_11075656	Not Available	723	Open in IMG/M
3300016445\|Ga0182038_10324290	Not Available	1267	Open in IMG/M
3300017932\|Ga0187814_10124042	Not Available	958	Open in IMG/M
3300017933\|Ga0187801_10497635	Not Available	514	Open in IMG/M
3300017970\|Ga0187783_10615648	All Organisms → cellular organisms → Bacteria	785	Open in IMG/M
3300017973\|Ga0187780_11454941	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300018007\|Ga0187805_10594010	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300018013\|Ga0187873_1270840	Not Available	626	Open in IMG/M
3300018034\|Ga0187863_10090732	All Organisms → cellular organisms → Bacteria	1715	Open in IMG/M
3300018037\|Ga0187883_10000611	All Organisms → cellular organisms → Bacteria	21952	Open in IMG/M
3300018038\|Ga0187855_10877045	Not Available	524	Open in IMG/M
3300018047\|Ga0187859_10334588	Not Available	824	Open in IMG/M
3300018047\|Ga0187859_10346688	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300018060\|Ga0187765_11027446	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300018060\|Ga0187765_11289914	Not Available	516	Open in IMG/M
3300019786\|Ga0182025_1028675	Not Available	527	Open in IMG/M
3300020582\|Ga0210395_11325244	Not Available	526	Open in IMG/M
3300021171\|Ga0210405_10284225	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	1308	Open in IMG/M
3300021181\|Ga0210388_11072886	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300021181\|Ga0210388_11202729	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300021401\|Ga0210393_10342240	All Organisms → cellular organisms → Bacteria	1217	Open in IMG/M
3300021401\|Ga0210393_11188285	Not Available	614	Open in IMG/M
3300021402\|Ga0210385_10649937	Not Available	806	Open in IMG/M
3300021402\|Ga0210385_10689312	All Organisms → cellular organisms → Bacteria	782	Open in IMG/M
3300021406\|Ga0210386_11427833	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300021420\|Ga0210394_10868029	Not Available	786	Open in IMG/M
3300021420\|Ga0210394_11196446	All Organisms → cellular organisms → Bacteria	652	Open in IMG/M
3300021433\|Ga0210391_10319853	All Organisms → cellular organisms → Bacteria	1217	Open in IMG/M
3300021474\|Ga0210390_10650140	All Organisms → cellular organisms → Bacteria	881	Open in IMG/M
3300021477\|Ga0210398_10400660	All Organisms → cellular organisms → Bacteria	1119	Open in IMG/M
3300021478\|Ga0210402_10929522	All Organisms → cellular organisms → Bacteria	796	Open in IMG/M
3300021478\|Ga0210402_11019066	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
3300021478\|Ga0210402_11240874	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
3300021559\|Ga0210409_10342804	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1343	Open in IMG/M
3300021560\|Ga0126371_13612166	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300021861\|Ga0213853_10179965	All Organisms → cellular organisms → Bacteria	1061	Open in IMG/M
3300023090\|Ga0224558_1142045	All Organisms → cellular organisms → Bacteria	780	Open in IMG/M
3300023090\|Ga0224558_1199570	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300023101\|Ga0224557_1229696	All Organisms → cellular organisms → Bacteria	626	Open in IMG/M
3300024271\|Ga0224564_1049537	Not Available	817	Open in IMG/M
3300025898\|Ga0207692_10285601	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1000	Open in IMG/M
3300025906\|Ga0207699_10313490	All Organisms → cellular organisms → Bacteria	1098	Open in IMG/M
3300025939\|Ga0207665_11342304	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300027173\|Ga0208097_1035615	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300027334\|Ga0209529_1051935	All Organisms → cellular organisms → Bacteria	699	Open in IMG/M
3300027609\|Ga0209221_1128773	Not Available	639	Open in IMG/M
3300027783\|Ga0209448_10210045	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300027854\|Ga0209517_10549191	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300027911\|Ga0209698_10412428	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	1054	Open in IMG/M
3300027986\|Ga0209168_10396009	All Organisms → cellular organisms → Bacteria	672	Open in IMG/M
3300028560\|Ga0302144_10033260	Not Available	1655	Open in IMG/M
3300031040\|Ga0265754_1034175	Not Available	535	Open in IMG/M
3300031090\|Ga0265760_10097829	All Organisms → cellular organisms → Bacteria → Acidobacteria	925	Open in IMG/M
3300031474\|Ga0170818_112824563	Not Available	558	Open in IMG/M
3300031546\|Ga0318538_10834815	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300031680\|Ga0318574_10799114	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300031711\|Ga0265314_10121585	Not Available	1643	Open in IMG/M
3300031718\|Ga0307474_10355040	All Organisms → cellular organisms → Bacteria	1136	Open in IMG/M
3300031753\|Ga0307477_10049493	All Organisms → cellular organisms → Bacteria	2889	Open in IMG/M
3300031820\|Ga0307473_10591175	All Organisms → cellular organisms → Bacteria	765	Open in IMG/M
3300031859\|Ga0318527_10354110	All Organisms → cellular organisms → Bacteria	626	Open in IMG/M
3300031893\|Ga0318536_10341825	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300032001\|Ga0306922_10280314	All Organisms → cellular organisms → Bacteria	1791	Open in IMG/M
3300032160\|Ga0311301_10919382	All Organisms → cellular organisms → Bacteria	1174	Open in IMG/M
3300032180\|Ga0307471_100165796	All Organisms → cellular organisms → Bacteria	2153	Open in IMG/M
3300032180\|Ga0307471_103779599	Not Available	535	Open in IMG/M
3300032770\|Ga0335085_12580419	Not Available	502	Open in IMG/M
3300032828\|Ga0335080_10307840	All Organisms → cellular organisms → Bacteria	1719	Open in IMG/M
3300032828\|Ga0335080_11875968	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300032892\|Ga0335081_10553865	Not Available	1431	Open in IMG/M
3300032892\|Ga0335081_11696093	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300032898\|Ga0335072_11710139	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300033158\|Ga0335077_11154810	All Organisms → cellular organisms → Bacteria	761	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.18%
Host-Associated	Host-Associated	0.82%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.15%
Aquatic	Environmental → Aquatic	18.03%
Plants	Host-Associated → Plants	0.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	77.87%
Freshwater	Environmental → Aquatic → Freshwater	11.48%
Sediment	Environmental → Aquatic → Sediment	5.74%
Peat	Environmental → Terrestrial → Peat	3.28%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.82%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	51.64%
Loam	Environmental → Terrestrial → Soil → Loam	14.75%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	11.48%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	10.66%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.74%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.28%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.82%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.82%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.82%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	32.79%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.03%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.66%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	9.02%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	6.56%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.74%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	4.10%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.10%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.28%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.46%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.82%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.82%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	22.95%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	7.38%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	5.74%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	5.74%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.74%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	4.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.92%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	4.10%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.10%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.10%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.10%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.28%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.28%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.46%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	2.46%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.82%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.82%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.82%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.82%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.82%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.82%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.82%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.82%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.82%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.82%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.82%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300001082	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300007982	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014155	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaG	Environmental	Open in IMG/M
3300014493	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018013	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_100	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300019786	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300023090	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24	Environmental	Open in IMG/M
3300023101	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 10-14	Environmental	Open in IMG/M
3300024271	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU5	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027173	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF036 (SPAdes)	Environmental	Open in IMG/M
3300027334	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O2 (SPAdes)	Environmental	Open in IMG/M
3300027609	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027986	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028560	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_2	Environmental	Open in IMG/M
3300031040	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE6 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031711	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG	Host-Associated	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_101121841	3300000567	Peatlands Soil	MSQKNKFRNKSRTRNKSRNRLRPLAGLLAAGLSLPGLAAAQSKPYP
JGI12664J13189_10032223	3300001082	Forest Soil	MSSNKIRNKSRKKSRKNLRPLAGLLAAGLSLPGLAAAQSQ
JGI12635J15846_100764654	3300001593	Forest Soil	MSRKIQARNKSRNRSRINRLRPLGGVLAAGLSLSGLAAAQSKEYPTYF
JGI12635J15846_102743181	3300001593	Forest Soil	MSRKASRNRPRNRSRNKSRINRLSPLAGVLAAGLCLPGLAS
JGI12627J18819_104203642	3300001867	Forest Soil	MSRKTSRQTFRRMFRNKTGNKSRINGLSPLAGLVAAAGLSLPGLAAAQSVPYPTY
Ga0066388_1034937842	3300005332	Tropical Forest Soil	MSRKASKYKFRNRSRNKSRINRLRPLAGLLAAGLGIPGVAAAQGSPYYP
Ga0070709_107270851	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MSRKASQKTFRNRSRNKSRINRLRPLTGLLAAGLGLPALAGAQSVP
Ga0070734_100002431	3300005533	Surface Soil	MSRKTSRKTFRKMFRDKSRNKSRINSLRPLAGLLAAGLSLPGLAAAQSKPYPTYVTG
Ga0070732_101978782	3300005542	Surface Soil	MSRKASRNKFRTRRKHLRPLASLLAAGLSLPGLAAAQSKEYP
Ga0066705_106182721	3300005569	Soil	MARKRYRNHFRDKSRKRRLHPLTSLVAAGLTLPGVAAAQSKLY
Ga0070762_112587242	3300005602	Soil	MSRKNSQNNSRRKSRSKSRINGLRPLAGLLAAGLSLPGLA
Ga0070763_104668281	3300005610	Soil	MSRKTSKFRKTFRVKSRNKSKINHLRPLAGLLAMGLGLPGVAAAQGNQYYP
Ga0070766_105874431	3300005921	Soil	MSRKAYRYKSRNRSRNKNRMKQLRPLAGLLAAGLSLPGLAAAQSKYYPTYFTG
Ga0070766_111011871	3300005921	Soil	MSRKNSQNNSRKKSRNKSRINSLRPLAGLLAAGLSLPGLAAAQSSKEFPTYFTGPQ
Ga0066790_102648501	3300005995	Soil	MSRKASQKPFRNRPRNKSKMNRLRPLAGLLAAGLSFP
Ga0075028_1001858861	3300006050	Watersheds	MSQKSSRNKSRNKSRTQRLRPLAGLLATGLSCATFASGQSVPYPKYH
Ga0075029_1000073597	3300006052	Watersheds	MSRKASRNRPRSRSRNKSRINRLSPLAGVLAAGLCVPGLAAGQSKEYPKYV
Ga0075019_100633293	3300006086	Watersheds	MSRRNKPRNRSRNKSRINRLSPLAGLLAAGLSLPGLAAAQSKPYPTYV
Ga0075015_1002911291	3300006102	Watersheds	MSRKTSRNRSRNKSRINRMRPLAGVLAAGLSLPGLA
Ga0075030_1004598962	3300006162	Watersheds	MSRKRIRNNSRKKSRINRLRPLAGLLAAGLSLPGLA
Ga0070716_1016995651	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MSRKTSRKTFRKMFRDKSRNKSRINPLRPLAGLLAAGLSFPGLAAAQSK
Ga0075014_1007366521	3300006174	Watersheds	MSRKASRNKPRNRSRDKSQINRLSPLAGVLAAGLSLPLLAGAQS
Ga0070765_1012316082	3300006176	Soil	MSRKNKFRNRSRNKTRNKSRMNRMGPLTGLLAAGL
Ga0102924_13545921	3300007982	Iron-Sulfur Acid Spring	MSRKTSPNNARNKSRNKSRINRLRPLAGLLAAGLSFPGLAA
Ga0116220_101168742	3300009525	Peatlands Soil	MSRKTSQNKARNRSRNRSRINRIRPLAGVLAAGLSFPLLAGAQSK
Ga0116224_101604322	3300009683	Peatlands Soil	MSQKNKFRNKSRTRNKSRNRLRPLAGLLAAGLSLPGLA
Ga0116217_108134482	3300009700	Peatlands Soil	MSRKTSRKAFRKTFRNKSRNKSRSCLRPLAGLLAAGLSLPGLAAAQS
Ga0116223_107797121	3300009839	Peatlands Soil	MSRKRSRNNSRNKSRTKNRLCSLTGLLAAGLSLPGLAAGQSKEY
Ga0126373_113757071	3300010048	Tropical Forest Soil	MPPKASRNKPQNRSRNKSRINRLRPLSGLVAAGLSLPGLAA
Ga0136449_1017832192	3300010379	Peatlands Soil	MSRKTAQNNSRKKSRNKSRINRWRPLAGLLAAGLSLPGLAAAQSQEFPTYV
Ga0126375_120844801	3300012948	Tropical Forest Soil	MSRKTSGKTFRKMFREKSRNKSRINRLRPLAGLVAA
Ga0126369_100854701	3300012971	Tropical Forest Soil	MSRKASRNKFRTRSRNKSQINRLRPLAGLVAAGLSV
Ga0126369_107120313	3300012971	Tropical Forest Soil	MSRKTSRKTFRKMFRDKDKSRINRLRPLAGLVAAGLSLPGLAAAQS
Ga0181524_102024641	3300014155	Bog	MSRKASRNKPRNRSRNKSRINHLSPLAGVLAAGLCLP
Ga0182016_101342403	3300014493	Bog	MSRKASRNKPRNRSRNKSKINHLSPLAGVLAAGMCLPGLAAGQSKEYPT
Ga0182032_102918081	3300016357	Soil	MSPKNFRKTFRNKFRNKSRNKSRIDPLRPLAGLVAAGALSLPAPAA
Ga0182034_108980862	3300016371	Soil	MPRRASYHKPRNRSRNKSRINPLRPLASLVAAGLTLPGIAAAQSKL
Ga0182037_120561682	3300016404	Soil	MSRNKSRHKSRHKSRNKSRINRLRPLAGLRSGLLAAGLGLPALAGAQSV
Ga0182039_110756562	3300016422	Soil	MSRQTSRKTFRKMFREKSRNKSRINHLRPLAGLVAAGLSLPGLAAAQSK
Ga0182038_103242901	3300016445	Soil	MSRKASRKTFRSRDKSRRKSLRPLAGLLAAGLSLPGLAAAQSKPYPTYVT
Ga0187814_101240421	3300017932	Freshwater Sediment	MSRKTSQFRKMFRIKSRNKSRINRLRPLAGLLAAGLSLP
Ga0187801_104976351	3300017933	Freshwater Sediment	MSRKASRSNPRRKFRNKSLTNRLRPLAGLLAAGLSLPGLA
Ga0187817_105616231	3300017955	Freshwater Sediment	MARKNKSRNRFRTRNKSRINHLRPLAGVLAAGLSLPGLAAAQSKPYPTYVTGPQP
Ga0187817_109014452	3300017955	Freshwater Sediment	MSRKTSKFRKMFRNKSRSKSLINRLRPISGVLAAGLSFPGLAAAQSVPYPTYFTGP
Ga0187783_106156481	3300017970	Tropical Peatland	MAGSKSRNISRNKARKSRISRLRPLVGLVTTGLGCAGLAAAQSQEFPTYVTGP
Ga0187780_114549412	3300017973	Tropical Peatland	MSRKASRYNSRKKSRNKSRINRLRPLAGLLAAGLSLPGLAT
Ga0187805_105940102	3300018007	Freshwater Sediment	MSRKTSKFRRTFRTNSRNKSRTKHLRPLAGLLATGLSCAGFAAAQS
Ga0187873_12708401	3300018013	Peatland	MSRKNSQNNSRRKSRNKSRINRLRPLAGLLAAGLSLPGLAAA
Ga0187863_100907321	3300018034	Peatland	MSGKASRNKPRNKSRCKSRINRMRPLAGLLAAGLSLPGLA
Ga0187883_100006111	3300018037	Peatland	MSRRTSRNKPRNRSRNKSRINRMRPIAGVLAAGLSFPL
Ga0187855_108770451	3300018038	Peatland	MSRKTSKFRKTFRIKSRNKSQINRLRPLAGLLAVGLSVPGV
Ga0187859_103345881	3300018047	Peatland	MSRKTARNQSRITSRNKSTISRIRPLAVLAVAMGLSILVLAQ
Ga0187859_103466882	3300018047	Peatland	MSGKASRNKPQKKSRNKSRINRLRPLTGVLAAGLSLSTLAAGQSKEYPTYLVGPQAN
Ga0187765_110274461	3300018060	Tropical Peatland	MSRKTSRKMFRKMFRNKPRHKSRINSLRPLAGLLAAGL
Ga0187765_112899141	3300018060	Tropical Peatland	MSRKASRNKPQKRSRSKSRLSRLRPLAGLLAAGLSLPTLA
Ga0182025_10286752	3300019786	Permafrost	MSRKTSQKTFRNKSRINRMRPLAGVLAAGLTLPVLAS
Ga0210395_113252442	3300020582	Soil	MSRKTSQFRKMFRIKSRNKSRINRLRPLAGLLAAGLSLPGLAVAQSK
Ga0210405_102842253	3300021171	Soil	MSRKTSQFRKMFRIKSRNKSRINRLRPLAGLLAAG
Ga0210388_110728862	3300021181	Soil	MSRKTARNNSRQKSRNKSRINRLRPLAGLLAAGLSLPGLA
Ga0210388_112027291	3300021181	Soil	MSRKTSQFRKMFRIKSRNKSRINRLRPLAGLLAAGLSLPGLAAAQSKYYPT
Ga0210393_103422401	3300021401	Soil	MSRKNSQNNSRKKSRNKSRINSLRPLAGLLAAGLSLPG
Ga0210393_111882851	3300021401	Soil	MSRRTSKFRKMFRIKSRNKSRINGLRPLAGLLAAGLSLPGLAA
Ga0210385_106499372	3300021402	Soil	MSRKNSQNNSRKKSRNKSRINSLRPLAGLLAAGLSLPGLAAAQSSKEFPTYFTGPQP
Ga0210385_106893121	3300021402	Soil	MSRKTSQFRKMFRIKSRNKSRINRLRPLAGLLAAGLSLPGLAAAQSKY
Ga0210386_114278331	3300021406	Soil	MSRKRSRNNSRSKSHTQRVSPLAGLLAAGLGFQGLATAQSVPYP
Ga0210394_108680291	3300021420	Soil	MSRKIQARNKSRNRSRINRLRPLAGLLATGLSCAGLATAQSK
Ga0210394_111964461	3300021420	Soil	MSRKKSRNNFRNRSRINRLRPLAGLVAAGLSFPALAVAQSK
Ga0210391_103198532	3300021433	Soil	MSRKIQARNKSRNKSRINRLRPLAGLLATGLGCAGLATAQSKEY
Ga0210390_106501401	3300021474	Soil	MSRKNKARNKSRNRSRTNLRPLASVLAAGLSFPALA
Ga0210398_104006602	3300021477	Soil	MSRKISKFRKMFRIKSRNKSRINRLRPLAGLLAAGLSLPGLAAAQSKYYP
Ga0210402_109295221	3300021478	Soil	MSRKTSKFRRMFRNKPGKKSGVNRLRPLTGLLAAG
Ga0210402_110190661	3300021478	Soil	MSRKNKSRNKFRTRNKSRINRLSPLAGLLAAGLSLPGLAAA
Ga0210402_112408741	3300021478	Soil	MARKASRNKPQTRARHKSRINHLRPLAGLLAAGMCLPGLAAAQSKEYPKYVAGPQ
Ga0210409_103428043	3300021559	Soil	MSRKNKARNKFRTRNKSRINRLRPLNGLLAAGLSLPLL
Ga0126371_100938054	3300021560	Tropical Forest Soil	MPPKASRNKPQNRSRNKSRINRLRPLSGLVAAGLSLPGLAAGQSKEYPKYFTGPQKN
Ga0126371_136121662	3300021560	Tropical Forest Soil	MSRNKSRSNFRNRSRTKPLRPLAGLVAAGLSLPGLAAAQS
Ga0213853_101799651	3300021861	Watersheds	MSRKASRNKPRNRSRNKSQINRLSPLAGVLAAGLCVPGLAAGQ
Ga0224558_11420451	3300023090	Soil	MSGKTSRNNPRRKSRNKSRINRLRPLTGLLAAGLSFSTLAAAQSKEYPTYFTG
Ga0224558_11995701	3300023090	Soil	MSRKASRTKPRNKSRINRMRPLAGVLAAGLSLPLLADAQSKEYPTYVT
Ga0224557_12296961	3300023101	Soil	MSRKTSRNNPRRKSRNKSRINRLRPLTGLLAAGLSFSTLAGA
Ga0224564_10495372	3300024271	Soil	MSRRTSKFRKMFRIKTRNKSRINRLRPLAGLLAAGLSLPGLAAAQSK
Ga0207692_102856012	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MSRRTSRKMFRKMFRDKTRINRLRPLAGIVAAGLSLPGLAAQSQQF
Ga0207699_103134901	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MARKRSRNNFRNKSRKEHLRPLAGLLAAGLSLPGVAAAQSRYYPTY
Ga0207665_113423041	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MSRKTSRKTFRKMFRDKSRNKSRINPLRPLAGLLAAGLSFPGLAAAQSKPYPTY
Ga0208097_10356151	3300027173	Forest Soil	MSRKTAHNNSRNKSRNKSRINRLRPLAGLLAAGLSLPGLAAAQSKEF
Ga0209529_10519351	3300027334	Forest Soil	MSGKASRNKPQKKSRNKTRPNRLRPLAGVLAAGMCLPGLAAGQSKEYPKYFTGPQPNGSW
Ga0209221_11287733	3300027609	Forest Soil	MSRKIQARNKSRNRSRINRLRPLGGVLAAGLSLSGLAAA
Ga0209448_102100452	3300027783	Bog Forest Soil	MSGKASRNKPQKKSRNKSRLNRLRPLAGVLAAGMCIPGLAAAQSKEYPTYFTGPQ
Ga0209517_105491911	3300027854	Peatlands Soil	MSRKTSQNKARNRSRNRSRINRIRPLAGVLAAGLSFPLLAGAQSKEYPTYVAGPQKNGS
Ga0209698_104124283	3300027911	Watersheds	MSRKASRNRPRNRSRNKSRIDRVRPLAGVLAAGMCLPGLAAGQSKEYPTYVTGPQKNGSW
Ga0209168_103960092	3300027986	Surface Soil	MSRKTSKFRKTFRVKSRNKSRVNRLRPLTGLLAAG
Ga0302144_100332601	3300028560	Bog	MSRKASRNKPRNRSRNKSKINHLSPLAGVLAAGMCLPGLAAGQSKEYPTYFTGPQK
Ga0265754_10341751	3300031040	Soil	MSHKTSKFRKMFRIKTRNKSRINRLRPLAGLLAAGL
Ga0265760_100978291	3300031090	Soil	MSRKASRNKPRNRSRNKSRINRLRPLTGLLAAGLSLPMLAAAQSK
Ga0307497_107421061	3300031226	Soil	MSRKTSRKMFRDKSRNKSRINHLRPLTGLLAAGLSLPGLAAAQSKPFPTYVTGPQ
Ga0170818_1128245632	3300031474	Forest Soil	MSRKTSKFRRMFRIKSRNKSRTNRLSPLTGLLAAGLSLSTLAGAQ
Ga0318538_108348151	3300031546	Soil	MSRNKSRNKSRHKSRNKSRINRLRPLAGLGTGLLAAGLSVPPRAAAQSS
Ga0318561_108186551	3300031679	Soil	MSRRTRKRLRNKSRNDSQINRLRPLAGLRSGLLAAGLGLPALA
Ga0318574_107991142	3300031680	Soil	MSRKTSRKTSRKTFRNKSRINRLRPFAGVVAAGLSLPGLAVAQSELYPTYV
Ga0265314_101215851	3300031711	Rhizosphere	MSRKIRNKSRSKSRNKSRLNHLRPLTGLLAAGLGLTGLA
Ga0307474_103550402	3300031718	Hardwood Forest Soil	MSRNKYRSRSRSKSRNKSRINHLRPLAGVLAMGLGLPGVAAAQGNQ
Ga0307477_100494931	3300031753	Hardwood Forest Soil	MSRKNKFRNKSRTRNKSRMNRLRPLAGLLAAGLSLPG
Ga0318509_105139211	3300031768	Soil	MSRNKSRHKSRNKSRINRLRPLAGLRSGLLAAGLGLPALAGAQSVPY
Ga0307473_105911751	3300031820	Hardwood Forest Soil	MSRKTSRKTFRKMFRDKSRNKSRINPLRPLAGLLAAGLSFPGLAAAQSKP
Ga0318527_103541102	3300031859	Soil	MSRNKSRHKSRNKSRINRLRPLAGLRSGLLAAGLGLPALAG
Ga0318536_103418251	3300031893	Soil	MSRKASRKTYRSRDKSRKKSLRPLAGLLAAGLSLPGLAAAQSKPYPTYVT
Ga0310912_105962612	3300031941	Soil	MSPKNFRKTFRNKSRNKSRNKSRNKSRINPLRPLAGLVAAGALSLPAPAAAQSVPY
Ga0306922_102803141	3300032001	Soil	MPRRASYHKPRNRSRNKSRINPLRPLASLVAAGLTLPGIAAA
Ga0318569_104110542	3300032010	Soil	MSRRTRKRLRNKSRNDSQINRLRPLAGLRSGLLAAGLGLPALAGA
Ga0318575_105545913	3300032055	Soil	MSRNKSRHKSRNKSRINRLRPLAGLGTGLLAAGLSVPPRAAAQSSPYYPKYV
Ga0318505_103695421	3300032060	Soil	MSRNKSRHKSRHKSRNKSRINRLRPLAGLGTGLLAAGLSVPPRAAAQSSPYYPK
Ga0311301_109193821	3300032160	Peatlands Soil	MSRKTSKFRKMFRMKSRNKLRINRLRPLAGLLAAGLSLPG
Ga0311301_114609931	3300032160	Peatlands Soil	MSRKIKLRNKSRNKSRINRLRPLSGVLAAGLSLSGLAAAQSKPYPTYLTGP
Ga0307471_1001657962	3300032180	Hardwood Forest Soil	MARKSRKTFRRMFRDKSRNKSRINHLRPLAGLLAAG
Ga0307471_1037795991	3300032180	Hardwood Forest Soil	MARKNKSRYKFRTRNKSRINRLSPLAGLLAAGLSLPGLAAAQSKP
Ga0335085_125804191	3300032770	Soil	MSRKASRNKPRNRSRNNSRINRLRPLAGLVAAGLSFPAAAAAQSVPY
Ga0335080_103078402	3300032828	Soil	MSRKTSKYKFRNRSRTKSRINRLRPLAGLLAAGLGLPGVAAAQGSQYYPT
Ga0335080_118759682	3300032828	Soil	MSRKASRNKPRSRSRNKSRINHLHPLAGLVAAGLSLP
Ga0335081_105538652	3300032892	Soil	MSRKASKFRKMFRIKSRDKSRTNRLRPLNTLLAAGL
Ga0335081_116960931	3300032892	Soil	MSRKTSRKTFRRMFRNKSRSNSPINSLRPLAGLLAAGL
Ga0335072_117101392	3300032898	Soil	MSRIKSRNHSRNKRRIGRLRPLAGLVAAAGLSLPT
Ga0335077_111548102	3300033158	Soil	MSRKASKYKYGNRSRNKSRISRLRPLAGLLAAGLGLPGVAAAQGNPYYPTYVTG

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.26
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.26
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F071533

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign