Metagenome / Metatranscriptome Family F071678

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F071678
Family Type	Metagenome / Metatranscriptome
Number of Sequences	122
Average Sequence Length	96 residues
Representative Sequence	NDHPMDIRIKAQSVSGLFISSPGTSCPATPGSKHAKFTGMAAVIRSTGTTTEPFTVDVDDCGEPGTADTFGIKTTTYSNGPSVLIGGNIQIHK
Number of Associated Samples	90
Number of Associated Scaffolds	122

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.46 %
% of genes near scaffold ends (potentially truncated)	94.26 %
% of genes from short scaffolds (< 2000 bps)	95.08 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.81

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.361 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (26.230 % of family members)
Environment Ontology (ENVO)	Unclassified (47.541 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.098 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 43.80% Coil/Unstructured: 56.20%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.81
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.81
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
f.4.4.0: OMPT-like	d2x55a1	2x55	0.64
f.4.1.1: OMPA-like	d1qjpa_	1qjp	0.62
f.4.1.1: OMPA-like	d1p4ta_	1p4t	0.59
f.4.1.0: OMPA-like	d3qraa_	3qra	0.58
f.4.5.1: Autotransporter	d1uynx_	1uyn	0.57

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 122 Family Scaffolds
PF00501	AMP-binding	3.28
PF01850	PIN	3.28
PF13243	SQHop_cyclase_C	3.28
PF12706	Lactamase_B_2	2.46
PF00892	EamA	1.64
PF13229	Beta_helix	1.64
PF00106	adh_short	0.82
PF02604	PhdYeFM_antitox	0.82
PF00196	GerE	0.82
PF02390	Methyltransf_4	0.82
PF13359	DDE_Tnp_4	0.82
PF16363	GDP_Man_Dehyd	0.82
PF13565	HTH_32	0.82
PF13620	CarboxypepD_reg	0.82
PF01315	Ald_Xan_dh_C	0.82
PF00563	EAL	0.82
PF00248	Aldo_ket_red	0.82
PF04909	Amidohydro_2	0.82
PF00082	Peptidase_S8	0.82
PF07638	Sigma70_ECF	0.82
PF12838	Fer4_7	0.82
PF02738	MoCoBD_1	0.82
PF01266	DAO	0.82
PF01370	Epimerase	0.82
PF02653	BPD_transp_2	0.82

COG ID	Name	Functional Category	% Frequency in 122 Family Scaffolds
COG0030	16S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1 (may also have DNA glycosylase/AP lyase activity)	Translation, ribosomal structure and biogenesis [J]	0.82
COG0220	tRNA G46 N7-methylase TrmB	Translation, ribosomal structure and biogenesis [J]	0.82
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.82
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	0.82
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	0.82
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	0.82
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	0.82
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	0.82
COG4122	tRNA 5-hydroxyU34 O-methylase TrmR/YrrM	Translation, ribosomal structure and biogenesis [J]	0.82
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	0.82
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	0.82

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.36 %
Unclassified	root	N/A	1.64 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.36 %
Unclassified	root	N/A	1.64 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.36 %
Unclassified	root	N/A	1.64 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	40.16 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	21.31 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	21.31 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.64 %
Unclassified	root	N/A	1.64 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	40.16 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	19.67 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	17.21 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3.28 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.64 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	1.64 %
Unclassified	root	N/A	1.64 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	39.34 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	18.85 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	17.21 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	3.28 %
unclassified Blastocatellia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia	1.64 %
Unclassified	root	N/A	1.64 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.82 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.82 %
Candidatus Poribacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria	0.82 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	38.52 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	18.85 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	17.21 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	3.28 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1.64 %
Unclassified	root	N/A	1.64 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.82 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.82 %
Candidatus Poribacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria	0.82 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	34.43 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	18.85 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	17.21 %
Candidatus Rokubacteria bacterium 13_1_40CM_2_68_8	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_2_68_8	4.10 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	3.28 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1.64 %
Unclassified	root	N/A	1.64 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.82 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.82 %
Candidatus Poribacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria	0.82 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.82 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000789\|JGI1027J11758_11683613	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	581	Open in IMG/M
3300004114\|Ga0062593_102848061	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	552	Open in IMG/M
3300004156\|Ga0062589_101241282	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	716	Open in IMG/M
3300005166\|Ga0066674_10237875	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	865	Open in IMG/M
3300005172\|Ga0066683_10342963	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	927	Open in IMG/M
3300005172\|Ga0066683_10843316	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300005176\|Ga0066679_10922167	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	549	Open in IMG/M
3300005178\|Ga0066688_10704603	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	641	Open in IMG/M
3300005180\|Ga0066685_10189178	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1410	Open in IMG/M
3300005180\|Ga0066685_10530922	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	813	Open in IMG/M
3300005180\|Ga0066685_10575091	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	776	Open in IMG/M
3300005181\|Ga0066678_10406179	All Organisms → cellular organisms → Bacteria	903	Open in IMG/M
3300005340\|Ga0070689_101066496	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300005365\|Ga0070688_100889021	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	702	Open in IMG/M
3300005438\|Ga0070701_11046265	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	572	Open in IMG/M
3300005450\|Ga0066682_10638483	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	663	Open in IMG/M
3300005471\|Ga0070698_100914391	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	823	Open in IMG/M
3300005536\|Ga0070697_101749450	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300005546\|Ga0070696_101795780	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300005549\|Ga0070704_100163903	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1761	Open in IMG/M
3300005559\|Ga0066700_11014401	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_2_68_8	545	Open in IMG/M
3300005560\|Ga0066670_11006257	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	509	Open in IMG/M
3300005568\|Ga0066703_10641446	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	615	Open in IMG/M
3300005575\|Ga0066702_10106949	All Organisms → cellular organisms → Bacteria	1607	Open in IMG/M
3300005576\|Ga0066708_11043218	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	507	Open in IMG/M
3300005598\|Ga0066706_11143005	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_2_68_8	593	Open in IMG/M
3300005615\|Ga0070702_100080534	All Organisms → cellular organisms → Bacteria	1949	Open in IMG/M
3300006031\|Ga0066651_10512812	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	635	Open in IMG/M
3300006034\|Ga0066656_10303555	All Organisms → cellular organisms → Bacteria	1030	Open in IMG/M
3300006034\|Ga0066656_10872724	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	576	Open in IMG/M
3300006049\|Ga0075417_10580502	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	569	Open in IMG/M
3300006163\|Ga0070715_10673859	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	615	Open in IMG/M
3300006797\|Ga0066659_10457482	All Organisms → cellular organisms → Bacteria	1016	Open in IMG/M
3300006797\|Ga0066659_10571186	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	915	Open in IMG/M
3300006797\|Ga0066659_10984146	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_2_68_8	705	Open in IMG/M
3300006797\|Ga0066659_11123212	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	657	Open in IMG/M
3300006797\|Ga0066659_11127352	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	656	Open in IMG/M
3300006797\|Ga0066659_11167198	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_2_68_8	644	Open in IMG/M
3300006797\|Ga0066659_11218770	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	628	Open in IMG/M
3300006797\|Ga0066659_11556531	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	554	Open in IMG/M
3300006847\|Ga0075431_100664982	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1021	Open in IMG/M
3300006854\|Ga0075425_101413641	All Organisms → cellular organisms → Bacteria	787	Open in IMG/M
3300006871\|Ga0075434_101805693	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	618	Open in IMG/M
3300006903\|Ga0075426_10084450	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2270	Open in IMG/M
3300006903\|Ga0075426_10125331	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1847	Open in IMG/M
3300006904\|Ga0075424_100260849	All Organisms → cellular organisms → Bacteria	1843	Open in IMG/M
3300006904\|Ga0075424_102664451	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	522	Open in IMG/M
3300007258\|Ga0099793_10402070	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	673	Open in IMG/M
3300009012\|Ga0066710_100703727	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1541	Open in IMG/M
3300009012\|Ga0066710_100909726	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1354	Open in IMG/M
3300009012\|Ga0066710_101403787	Not Available	1082	Open in IMG/M
3300009012\|Ga0066710_101783755	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	930	Open in IMG/M
3300009012\|Ga0066710_101962325	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	871	Open in IMG/M
3300009012\|Ga0066710_102609177	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	726	Open in IMG/M
3300009012\|Ga0066710_103703649	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	575	Open in IMG/M
3300009012\|Ga0066710_103705614	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	575	Open in IMG/M
3300009012\|Ga0066710_104144453	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	542	Open in IMG/M
3300009012\|Ga0066710_104144900	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	542	Open in IMG/M
3300009137\|Ga0066709_103542510	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	566	Open in IMG/M
3300009137\|Ga0066709_103578220	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	564	Open in IMG/M
3300009137\|Ga0066709_103715173	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	554	Open in IMG/M
3300009148\|Ga0105243_10864321	All Organisms → cellular organisms → Bacteria	897	Open in IMG/M
3300009156\|Ga0111538_10024713	All Organisms → cellular organisms → Bacteria	7832	Open in IMG/M
3300009162\|Ga0075423_10541548	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1225	Open in IMG/M
3300009177\|Ga0105248_12642420	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	572	Open in IMG/M
3300010107\|Ga0127494_1077548	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	508	Open in IMG/M
3300010303\|Ga0134082_10151180	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	938	Open in IMG/M
3300010337\|Ga0134062_10547731	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	588	Open in IMG/M
3300010399\|Ga0134127_12856545	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	562	Open in IMG/M
3300010400\|Ga0134122_10840597	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	881	Open in IMG/M
3300010401\|Ga0134121_12713601	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	540	Open in IMG/M
3300010403\|Ga0134123_12326988	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	600	Open in IMG/M
3300012189\|Ga0137388_10674844	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	960	Open in IMG/M
3300012198\|Ga0137364_10589211	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	838	Open in IMG/M
3300012198\|Ga0137364_10902689	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	669	Open in IMG/M
3300012199\|Ga0137383_10882418	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	653	Open in IMG/M
3300012200\|Ga0137382_10494867	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	868	Open in IMG/M
3300012200\|Ga0137382_10905788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	635	Open in IMG/M
3300012202\|Ga0137363_10784766	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	808	Open in IMG/M
3300012203\|Ga0137399_10029416	All Organisms → cellular organisms → Bacteria	3757	Open in IMG/M
3300012205\|Ga0137362_11551422	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	549	Open in IMG/M
3300012205\|Ga0137362_11637260	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	530	Open in IMG/M
3300012206\|Ga0137380_10114509	Not Available	2463	Open in IMG/M
3300012207\|Ga0137381_10184655	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria	1804	Open in IMG/M
3300012208\|Ga0137376_11515195	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	562	Open in IMG/M
3300012208\|Ga0137376_11788929	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	505	Open in IMG/M
3300012209\|Ga0137379_11229535	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	656	Open in IMG/M
3300012212\|Ga0150985_117393302	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	682	Open in IMG/M
3300012361\|Ga0137360_11150896	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	671	Open in IMG/M
3300012362\|Ga0137361_11918242	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	509	Open in IMG/M
3300012925\|Ga0137419_10640961	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	857	Open in IMG/M
3300012927\|Ga0137416_10123826	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1983	Open in IMG/M
3300012944\|Ga0137410_11844288	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	535	Open in IMG/M
3300012972\|Ga0134077_10521172	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	529	Open in IMG/M
3300012972\|Ga0134077_10565191	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	511	Open in IMG/M
3300012975\|Ga0134110_10191776	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_2_68_8	855	Open in IMG/M
3300014154\|Ga0134075_10105561	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1192	Open in IMG/M
3300014154\|Ga0134075_10436019	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	581	Open in IMG/M
3300015245\|Ga0137409_11080512	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	641	Open in IMG/M
3300015264\|Ga0137403_10846625	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	767	Open in IMG/M
3300018027\|Ga0184605_10534983	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	507	Open in IMG/M
3300018061\|Ga0184619_10192772	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	936	Open in IMG/M
3300018076\|Ga0184609_10483090	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	566	Open in IMG/M
3300018431\|Ga0066655_11029111	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	571	Open in IMG/M
3300018431\|Ga0066655_11149293	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300018433\|Ga0066667_10409010	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1099	Open in IMG/M
3300019279\|Ga0184642_1571060	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	503	Open in IMG/M
3300020002\|Ga0193730_1182632	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	527	Open in IMG/M
3300020170\|Ga0179594_10429912	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	501	Open in IMG/M
3300021445\|Ga0182009_10322584	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	783	Open in IMG/M
3300025922\|Ga0207646_11853527	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	515	Open in IMG/M
3300026297\|Ga0209237_1258398	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	534	Open in IMG/M
3300026301\|Ga0209238_1276392	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	505	Open in IMG/M
3300026313\|Ga0209761_1006247	All Organisms → cellular organisms → Bacteria	7869	Open in IMG/M
3300026342\|Ga0209057_1202958	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	564	Open in IMG/M
3300026532\|Ga0209160_1162970	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	989	Open in IMG/M
3300026540\|Ga0209376_1246793	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	767	Open in IMG/M
3300026552\|Ga0209577_10397487	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	993	Open in IMG/M
3300028381\|Ga0268264_10029429	All Organisms → cellular organisms → Bacteria	4498	Open in IMG/M
3300028884\|Ga0307308_10133559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1187	Open in IMG/M
3300031058\|Ga0308189_10107613	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	895	Open in IMG/M
3300031058\|Ga0308189_10406304	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	564	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	88.52%
Host-Associated	Host-Associated	11.48%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.25%
Plants	Host-Associated → Plants	11.48%
Aquatic	Environmental → Aquatic	3.28%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	85.25%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.84%
Sediment	Environmental → Aquatic → Sediment	2.46%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.64%
Freshwater	Environmental → Aquatic → Freshwater	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	77.05%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.84%
Loam	Environmental → Terrestrial → Soil → Loam	8.20%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.46%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.82%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.82%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	41.80%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	33.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.84%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.20%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.46%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.64%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	26.23%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	19.67%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	15.57%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.20%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	6.56%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.28%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.28%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.64%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.64%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.82%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.82%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300010107	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019279	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental	Open in IMG/M
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental	Open in IMG/M
3300026540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J11758_116836131	3300000789	Soil	ASASNPAAQATFGFVAKCCDPSGNLDYNDHASDVRIKAQSIDGFFISTGPCGLNTHATFTGTAQVIRSTGTMMEPFTVEVDDCGEPGLADTFGIRTTTYVNGPSPLIGGNIEIHKSP*
Ga0062593_1028480611	3300004114	Soil	FSVQCCPEKGNLEYNDHDAGVRIKVISIDGLVISNGLCGTNTHARFTGMAQVIQSTGTTTEAFTVEVDDCGEPGTTDTFGIQTASYANGPKPLIGGNIQIHR*
Ga0062589_1012412821	3300004156	Soil	SSPDGKATFGFVVRCCPANGNLEYKDHEMDVRIKAQSIDSLVISDGPCGPNTHATFTGMASVIRPTGTTTEFFVVEVDDCGEPGTLDTFSIQAETYSNGPSPLVGGNIQIH*
Ga0066674_102378752	3300005166	Soil	KAESINGLVIRSPGDSCMPAGGKHATFTGMAAVIRSTGTTDEAFTVDVDDCGEPGTADTFGIETATYSNPPIPLPPSTLIGGNIQIKN*
Ga0066683_103429631	3300005172	Soil	GNLEYNDHQADVRIKAQSISGLNISSPATACAATPGSQHATFFGTAEVIRPTGTTTEEFTVDVDDCGEPGTADTFGIKTMSYSNGPSTLIGGNIQIHK*
Ga0066683_108433162	3300005172	Soil	TRLIITGQATTLCPTVAGSKHAMIEGTASVIRSTGTDEEGFTVLVDDCGEPGTSDTFGISTDTYANPPQTLLGGNIQIR*
Ga0066679_109221672	3300005176	Soil	QSVIALVISSPGTLCPATPGSKHAKFTGMAAVIQSTGTTMESYTVDVDDCGEPGTADTFGIKTDTYSNPSIPLAPSTLIGGNIQIKN*
Ga0066688_107046031	3300005178	Soil	QSISGLNISSPGSCASTPGSKHATFRGTASVIRPAGTTTEPFTVDVDDCGEPGTADTFSIKTTTYSAGPETLIGGNIQIH*
Ga0066685_101891781	3300005180	Soil	IRSQRPGDSCPTIPGSKHATIGGRATVISSTGTETEDFTVEVDDCGEPGTADRFGIKTETYSNGWPIPSTLTGGNIQIKN*
Ga0066685_105309222	3300005180	Soil	TGNLEYNDHQAGVRIKAESISGLFISSPGTSCPATPGSKRAKFTGMAEVIRSTGTTTEPFTVDVDDCGEPGMADTFAITTTTYSNGPSTLIGGNIQIHK*
Ga0066685_105750911	3300005180	Soil	KCCPATGNLEYNDHQADVRIKAQSFDGLFISPSTSCSTPGSKHAKFTGTAAVIRSTGTTTEPFTVDVDDCGEPGTADKFGIKTTTYSNGPSTLTGGNIQIHK*
Ga0066678_104061791	3300005181	Soil	ATFGLAVKCCPATGNLDYNDHGAGVRIKAQSVSGLFISSPGQSCPTAPGSKHARITGSASVIRSTGTTTQDFTVDVDDCSEPGTNDTFSIQTFGTTPYSSGPPTTLIGGNIQIH*
Ga0070689_1010664961	3300005340	Switchgrass Rhizosphere	GFSAKCCAPSGNLEYNDHASDVRIKAQSIDGFFISTGACGANTHATFTGMAKVIRSTGTTTERFTVEVDDCGEPGTADTFGIRTESYVNGPGPLIGGNIQIHN*
Ga0070688_1008890211	3300005365	Switchgrass Rhizosphere	VRIKAQTVDGLFISSPGTSCPTTPGSKHATFTGVASVIRSIGTTSERYTVDVDDCGEPGSADTFGIKTDTYANGPSPLIGGNVQIHK*
Ga0070701_110462652	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	VRIKAQTVDGFFISRPGVSCPAVPGSAHVTFTGVAAVIRPVGTTNERYTVDADDCGEPGSADTFGIKTTTYSNGPSPLIGGNIQIHK*
Ga0066682_106384832	3300005450	Soil	QQADVRIKAESIDGLFISGAGMSCRAPGGKHATFTGTAQVIRSTGTITEPFTVDVDDCGEPGTADTFGIKTTTYSNGPSTLIGGNIQIK*
Ga0070698_1009143911	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	RIKAQTVDGLFISNVACTTTTGKHATFTGIAAVIRPTGTATERYTVDVDDCGEPGTEDTFGIKTTTYANGPTPLIAGNIQIHK*
Ga0070697_1017494501	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	NLEYNDHQADVRIKARTVDGLFISSPGNSCPLTPGSKHATFTGIASVIRSTGPNDERYTVDVDDCGEPGSADTFGIKTDTYANGPSTLIGGNIQIHK*
Ga0070696_1017957801	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	NLEYKDQGADVRIKGTSIDGLSISSPTTACSANPEGKHATITGTADVIRSTGTLTDQPFTVEVDDCGEPGSADTFGIRTTGYSNGPSTLIGGNIQIH*
Ga0070704_1001639031	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	ARCCSPTGNLEYNDHAANVRIKAQTVDGFFISRPGVSCPAVPGSAHVTFTGMAAVIRPVGTTNERYTVDADDCGEPGSADTFGIKTTTYSNGPSPLIGGNIQIHK*
Ga0066700_110144012	3300005559	Soil	FISSPGTSCPLTPGSKHAKFTGTAAVIRSTGTTTEPLTVDVDDCGEPGTGDSFGIKTTTYSNGPSTLIAGNIQIH*
Ga0066670_110062571	3300005560	Soil	NLEYNDHQADVRIKAQSIDGPVIRSQRPGDSCPTIPGSKHATIGGRATVISSTGTETEDFTVEVDDCGEPGTADRFGIKTETYSNGWPIPSTLTGGNIQIKN*
Ga0066703_106414462	3300005568	Soil	GNLEYNDHEADVRIKAESFDGLFISSPGMSCPTITGSKHATFTGMAAVIRPTGTTHEHLTVDVDDCGEPGTMDMFGIKVDTYMNGPSKLIGGNIQIH*
Ga0066702_101069491	3300005575	Soil	PATMRSRAGPNSKATFGLAVKCCPASGNLDYNDHDAGVRIKAQSINNLFITSGSCGPNTHATFSGTAQVIRSTGTTTEPFTVEVDDCGEPGTADTFGIRTTTYSNGPSPLLGGNIQIRRQ
Ga0066708_110432182	3300005576	Soil	IKAQSIDQLIISGPLDTSCPTLPGAKHAFIHGTASVIRSSETTNETFTVDVDDCGEPGTNDTFGIKAESYQNGPSKLLSGNIQIH*
Ga0066706_111430052	3300005598	Soil	DHQADVRIKAQSFDRLFISSPGTSCPLTPGSKHAKFTGTAAVIRSTGTTTEPLTVDVDDCGEPGTGDSFGIKTTTYSNGPSTLIAGNIQIH*
Ga0070702_1000805343	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	ATFGFTARCCTPSGNLEYNDHPADVRIKAQTVDGLFISSPGTSCPTTPGSKHATFTGVASVIRSIGTTSERYTVDVDDCGEPGSADTFGIKTDTYTNGPSPLIGGNVQIHK*
Ga0066651_105128121	3300006031	Soil	AGVRIKAQSIDQLIISGPLDTSCPTLPGAKHAFIHGTASVIRSSETTNETFTVDVDDCGEPGTNDTFGIKAASYQNGPSKLLGGNIQIH*
Ga0066656_103035551	3300006034	Soil	DHQAGVRIKSESVGGLLISSPGASCPAIPGSRHASFNGVAVVIRSTGTTTEPVTVDVDDCGEPGKSDTFGISTTSYSNGPSTLAGGNIQIHQ*
Ga0066656_108727241	3300006034	Soil	NLEYNDHQADVRIKAQSISGLNISSPGTFCPTTPGSKHATFFGTADVIRPTGTTTEEFTVDVDDCGEPGTADTFGIKTTTYSNGPSTLIGVNIQIHK*
Ga0075417_105805021	3300006049	Populus Rhizosphere	GNLEYNDHQADVRIKAQTVDGLFISSPGTSCSSTPGSQHATFTGIASVIRSVGTTTERYTVDVDDCGEPGSADTFGIKTATYSNVPSTLIGGNVQIHK*
Ga0070715_106738592	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	NLEYNDHEAGVRIKATSVDNFAVSSPGTSCPATPGSKHATFTGTAQVIRSAGTTNEPYTVDVDDCGEPGTQDTFAIKTTSYANGPKTLMGGNIQIH*
Ga0066659_104574822	3300006797	Soil	GFVATCCTARGNLDYNDHPMDVRIKAQSVDGLSISSPGASCTATPGSKHATFRGMASVIRSTGTTTEPFTVDVDDCGEPGTGASFSIKTTTYSNGPSLLIGGNIQIH*
Ga0066659_105711861	3300006797	Soil	CCPATGNLEYNDHQADVRIKAQSVEGPVIRSPGDSCPTTPGSKHATIGGTATVIRSTGTATEDFTVEVDDCGEPGTADTFGIKTETYSNGWPIPSTLTGGNIQIKN*
Ga0066659_109841462	3300006797	Soil	GFVATCCTARGNLDYNDHPMDVRIKAQSVDGLSISSPGASCPATPGSKHATFRGMAAVIRSTGTTTEPFTVDVDDCGEPGTGDTFGIKTTTYSNGPSPLIGGNIQIH*
Ga0066659_111232122	3300006797	Soil	MDGLFISSPGTSCPAIPGSKHATFTGTAQVIRSTGTTTEPFTVDVDDCGEPGTTDKLGIQTTTYSNGPSTLIGGNIQIHK*
Ga0066659_111273522	3300006797	Soil	AKCCPATGNLEYNDHQADVRIKAQSVEGPVIRSPGDSCPTIPGSKHATIGGTATVIRSTGTETEDFTVEVDDCGEPGTADTFGIRTDTYSNGWPFPSTLTGGNIQIHK*
Ga0066659_111671982	3300006797	Soil	GFVVKCCSATGNLEYNDHQADVRIKAQSFDRLFISSPGTSCPLTPGSKHAKFTGTAAVIRSTGTTTEPLTVDVDDCGEPGTGDSFGIKTTTYSNGPSTLIAGNIQIH*
Ga0066659_112187702	3300006797	Soil	APVIRSPGDSCPTTFGSKHATIGGTATVIRSTGTATEDFTVEVDDCGEPGTADTFGIKTDTYSNGWPMPSTLTGGNIQIKN*
Ga0066659_115565312	3300006797	Soil	AKCCAPSGNLEYQDSSAGVRIKAQSVDALQISSPGSSCPMTPESKHAKFGGTASVIRSTATTTEPYTVDVDDCGEPGTSDTFGIKTTTYSNGPSTLIGGNIQIKQ*
Ga0075431_1006649822	3300006847	Populus Rhizosphere	SGNLQYDDHQAEVRIKSQFIDGLLITSPGTTCPATPGSKHATFSGMANVIRPTGTTNERFTVEVDDCGEPGTTDTFGITTDTYANGPSVLIGGNIQIHR*
Ga0075425_1014136411	3300006854	Populus Rhizosphere	IKAQSIDHLIISSPGVFCPLTPGSKHATFSGTASVIRSTGTTTESFTVDVDDCGEPGTSDTFGIKTASYANGPSTLLGGNIQIH*
Ga0075434_1018056932	3300006871	Populus Rhizosphere	SVGGLFISSPGMSCPATPGSKHARFTGSASVIRSTGTTTEPFTVDVDDCGEPGSADTFGIKTTTYSNGPSTLIGGNIQIQ*
Ga0075426_100844502	3300006903	Populus Rhizosphere	ADVRIKAQSVDGLSISSPGASCTATPGSKHATFTGMAEVIRSTGTTMERFTADVDDCGEPGTMDTFGIRTLSYIHAPSTLIGGNIQIH*
Ga0075426_101253313	3300006903	Populus Rhizosphere	VVRCCAPTGNLEYNDHQADVRIKAQSFDGLFISSPGTACPGTPGSMHATFHGMAAVIRSTGTNNEPFTVDVDDCGEPGTADTFGIKTLTYSNGPSTLIGGNIQIHK*
Ga0075424_1002608493	3300006904	Populus Rhizosphere	SLAGGNSKATLGFTVRCCAPAGNLEYDDHDAGVRIKAQTIDGLSISNGTCGPNTHATFTGTAQVIRSTGTTTESFTVDVDDCGEPGTMDKFGIHATTYSNPPTGESTLIGGNIQIHK*
Ga0075424_1026644511	3300006904	Populus Rhizosphere	LMVTSSNPNGRATFGFVARCCAPSGNLEYNDHAENVRIKAISVDGFNISPSGACIGGKHAQFVGDASVIRSTGTTTERYTVDVDDCGEPGTSDMFGIKTASYANGPSVLLGGNIQIKQ*
Ga0099793_104020701	3300007258	Vadose Zone Soil	TGNLEYNDHQADVRIKAQSFDGLSITSPGTSCPATPGSKHATFGGTAAVIRSTGTTTEPFTVDVDDCGEPGTADSFGIKTTTYSNGPSTLIGGNIQIHGSSAGGN*
Ga0066710_1007037271	3300009012	Grasslands Soil	NDHPMDIRIKAQSVSGLFISSPGTSCPATPGSKHAKFTGMAAVIRSTGTTTEPFTVDVDDCGEPGTADTFGIKTTTYSNGPSVLIGGNIQIHK
Ga0066710_1009097261	3300009012	Grasslands Soil	GNLEYNDHSMDVRIKAQSIDALSITSPGVSCPATPGSKHATFTGTASVIRSTGTTTEPFTVEVDDCGEPGSADTFSIKTTTYSNGPSPLIGGNIQIH
Ga0066710_1014037873	3300009012	Grasslands Soil	LSITSPGTSCMPVGGKHATFTGMADVIRSTGTSPQRFTVDVDDCGEPGTMDTFGIRTFGTLPYANGPSTLIGGNIQIKQ
Ga0066710_1017837552	3300009012	Grasslands Soil	FGFVKCCPATGNLEYNDHQTDVRIKAQSFDGLSITSPGTFCPATPGSKHATFGGTAAVIRSTGTTTEPFTVDVDDCGEPGTADSFGIKATTYSNGPSTLIGGNIQIHRSRAVGD
Ga0066710_1019623252	3300009012	Grasslands Soil	IRSQRPGDSCPTIPGSKHATIGGRATVISSTGTETEDFTVEVDDCGEPGTADRFGIKTETYSNGWPIPSTLTGGNIQIKN
Ga0066710_1026091772	3300009012	Grasslands Soil	CPASGNLEYNDHDADVRIKAQSIDALSISAGLCGPNTHHATFTGTAQVIRSTGTTTEPFTVDVDDCGEPGANDTFGIKTTTYSNGPNKLIGGNIQIHPQ
Ga0066710_1037036492	3300009012	Grasslands Soil	PPAIVPSVTGGQSNATFGFSVRCCPAAGNLQYNDHGADTRIKAESIDGLFISSPGVSCPAVPGSKHARFTGMAAVTRPAGTTHERFTADADDCGEPGTADAFGIQTETYDKPQSTLVGGNIQIHKS
Ga0066710_1037056141	3300009012	Grasslands Soil	TGNLEYNDHAMDVRIKAQSVEGPVIRTPGDSCPGTPGSKHATFGGTAAVIRSSGTATEDFTVEVDDCGEPGTADTFGIKTTTYSNGWPVPRTLIGGNIQIKN
Ga0066710_1041444531	3300009012	Grasslands Soil	CCPVTGNLEYNDHSMDIRIKAQSIDALSITSPGSSCPATPGSKHATFTGMASVIRSTGTTTEPFTVDVDDCGEPGTADTFSIKTTTYSNGPSPLIGGNIQIH
Ga0066710_1041449002	3300009012	Grasslands Soil	YNDHSADVRIKAESIDKLFISNSSSCPSPGGKHAQFTGTASVIRSTGTTTEPFTVDVNDCGEPGTADTFGIKTTTYSNGPSTLIGGNIQIH
Ga0066709_1035425101	3300009137	Grasslands Soil	RAQATFGFVVKCCDPTGNLEYNDHQAGVRIKAQSISGLFISSPGTSCPATPGSKHAKFTGTAAVIRSTGTTTESFTVDVDDCGEPGMADTFGITTTTYSNGPSTLIGGNVQIHK*
Ga0066709_1035782202	3300009137	Grasslands Soil	ISSPGTFCAPMTGKHAKVTGMAAVIRSTGTTTEPFTVDVDDCGEPGTMDTFGIKTTTYSNGPSTLIGGNIQIKQ*
Ga0066709_1037151732	3300009137	Grasslands Soil	FGFTVKCCAATGNLEYNDHAADVRIKAQAIDGLVIGSPGTSCPATPGSQHARFTGTAEVIRSIGTTMEPFTVDVDDCGEPGTSDTFGIKTCEHQLACKRLTFVQAIHF*
Ga0105243_108643212	3300009148	Miscanthus Rhizosphere	VQCCAPRGNLAYNDHAAGVLIRSKSIDGLFISSPGATCPAVPGSQHARFTGTAKVIHADGTTTTERFTANADDCGEPGTADTFGIQTVTYSNGPSVLIGGNIQIHR*
Ga0111538_100247136	3300009156	Populus Rhizosphere	VRIKAQTVDGLFISTPGTSCPATPGSKHATFTGMASVIRSIGTTNERYTVDVDDCGEPGSADTFGIKTDTYANGPSPLIGGNIQIHK*
Ga0075423_105415482	3300009162	Populus Rhizosphere	SKATFGFTVRCCAPAGNLEYDDHDAGVRIKARTIDGLSISNGTCGPNTHATFTGTAQVIRSTGTTTESFTVDVDDCGEPGTMDKFGIHATTYSNPPTGESTLIGGNIQIHK*
Ga0105248_126424202	3300009177	Switchgrass Rhizosphere	GFVAKCCPGSGNLEYKDPGADVRIKAKSIDGLSISRPTAACPANPDGKHATFTGTADVIRSTGTLTDQPFTVEVDDCGEPGTSDTFGIRTTGYSNGPSTLIGGNIQIQ*
Ga0127494_10775482	3300010107	Grasslands Soil	AQSVEGPVIRSPGDSCPTTPGSKHATIGGTATVIRSTGTATEDFTVEVDDCGEPGTADTFGIKTDTYSNGWPIPSTLTGGNIQIKN*
Ga0134082_101511802	3300010303	Grasslands Soil	CCPATGNLEYYDHQADVRIKAQSVEGPVIRSPGDSCPTIPGSKHATIGGTATVIRSTGTETEDFTVEVDDCGEPGTADRFGIKTETYSNGWPIPSTLTGGNIQIKN*
Ga0134062_105477312	3300010337	Grasslands Soil	EYNDKPGGVRIKAASYSGLFISNPGTSCPATPGSKHAKFTGMAAVIRSTGTTTEPFTVDVDDCGEPGTGDSFSIKTTTYSNGPSPLIGGNIQIH*
Ga0134127_128565452	3300010399	Terrestrial Soil	GNLEYNDHAADVRIKVQSIDGFFISTGLCGPNTHATFSGTAQVIRPTGTTTEPFTVEVDDCGEPGTADTFGISTTTYSNGPSPLLGGNIQIHR*
Ga0134122_108405972	3300010400	Terrestrial Soil	DHPADVRIKAQTVDGLFISSPGTSCPTTPGSKHATFTGIAAVIRSIGTTSERYTVDVDDCGEPGSADTFGIKTDTYANGPSPLIGGNVQIHK*
Ga0134121_127136011	3300010401	Terrestrial Soil	TFGFVARCCAPSGNLDYTDHEMDVRIKAQSIDGFFISTGPCGPNTHATFTGTAQVIRSTGTTTEPFAVEVDDCGEPGVTDTFGIRTTTYFNGPSPLIGGNIQIHKSP*
Ga0134123_123269882	3300010403	Terrestrial Soil	ASGNLEYNDHEAGVRIKAQSIDNLIITAGTCGANTHATFTGTAQVIRSSGTTTEPLTVEVDDCGEPGTADKFEIRTTTYSNGPSTLVGGNIKIHRQ*
Ga0137388_106748441	3300012189	Vadose Zone Soil	KAQSISGLFISSPGLACTAIPGSKHARFTGTAAVIRSTGTTNEPFTVNVDDCGEPGTSDTFSINTTSYASGPNTLIGGNIQIH*
Ga0137364_105892112	3300012198	Vadose Zone Soil	MINEGSPPTGNLEYNDHPADVRIKVLSYSTLFISSPGTSCPLTLGSKHAKFTGTASVIRPTGTTSEPITVEVDDCGEPGTADTFGIQTTTYVNMPPKALIGGNIKIHKG*
Ga0137364_109026892	3300012198	Vadose Zone Soil	FVVKCCAPTGNLEYNDHQADVRIKAQSISGLNISSPATACAATPGSQHATFFGTAEVIRPTGTTTEEFTVDVDDCGEPGMADTFAITTTTYSNGPSALIGGNIQIHK*
Ga0137383_108824181	3300012199	Vadose Zone Soil	DHPMDIRIKAQSVSGLFISSPGTSCPATPGSKHAKFTGMAAVIRSTGTTTEPFTVDVDDCGEPGTADTFGIKTTTYLIGQSVLIGGNIQIHK*
Ga0137382_104948671	3300012200	Vadose Zone Soil	AATGNLEYNDQQADVRIKTESIDGLFISGAGMSCPAPGGKHATFTGTAQVIRSTGTITEPFTVDVDDCGEPGNADTFGIKTTTYSNGPSTLIGGNIQIK*
Ga0137382_109057882	3300012200	Vadose Zone Soil	ADVRIKAESFDRLIISSPGKSCPAVFGSKHATITGTARVIRSGSNPTTESLTVEVDDCGEPGTADTFGITTTTYSNGPSTLIGGNIQIH*
Ga0137363_107847662	3300012202	Vadose Zone Soil	YNDHSTDIRIKAQSIDALKISSPGTSCPTTPGSQHATFGGMASVIRSTGTTSEPFTVDVDDCGEPGTADTFGIKTTTYSNGPKPLTGGNIQIHK*
Ga0137399_100294164	3300012203	Vadose Zone Soil	VKCCAATGNLEYNDHAADVRIKAQAIDGLVIGSPGTSCPATPGSQHARFTGTAEVIRSIGTTTEPFTVDVDDCGEPGTSDTFGIKTTTYSNGPSPLIGGNIQIH*
Ga0137362_115514221	3300012205	Vadose Zone Soil	STDIRIKAQSIDALKISSPGTSCPTTPGSQHATFGGMASVIRSTGTTSEPFTVDVDDCGEPGTADTFGIKTTTYADGPKPLTGGNIQIHK*
Ga0137362_116372602	3300012205	Vadose Zone Soil	GNLEYYDHQADVRIKAQSISGLLISSPGISCSATPGSKHAKVTGTAEVIRSTGTTTESFTVDVDDCGEPGMADTFGITTTTYSNGPSTLIGGNIQIHK*
Ga0137380_101145091	3300012206	Vadose Zone Soil	MDIRIKAQSVSGLFISSPGTSCPATPGSKHAKFTGMAAVIRSTGTTTEPFTVDVDDCGEPGTADTFGIKTTTYSNGPSVLIGGNIQIHK*
Ga0137381_101846552	3300012207	Vadose Zone Soil	MDIRIKAQSVSGLFISSPGTSCPATPGSKHAKFTGMAAVIRSTGTTTEPFTVEVDDCGEPGTADTFGIKTTTYSNGPSVLIGGNIQIHK*
Ga0137376_115151952	3300012208	Vadose Zone Soil	GLFISSPGTSCPLAPGSKHARFTGSAKVIRPTGTTTEPFTVDVDDCGEPGTMDNFGIKTDTYSNGPSTLIGGNIQIHKQ*
Ga0137376_117889292	3300012208	Vadose Zone Soil	SGLFISSPGTSCPATPGSKRAKFTGMAEVIRSTGTTTEPFTVDVDDCGEPGTMDTFGIKTTTYSNGPSTLIGGNIQIHK*
Ga0137379_112295351	3300012209	Vadose Zone Soil	ALATDGLIGINSNDHPMDIRIKAQSVSGLFISSPGTSCPATPGSKHAKFTGMAAVIRSTGTTTEPFTVDVDDCGEPGTADTFGIKTTTYSNGPSVLIGGNIQIHK*
Ga0150985_1173933021	3300012212	Avena Fatua Rhizosphere	LEYNDHGMNVRIKAQSIDRFFISPGACGANTHATFTGMAQVIRSTGTTTEPFTVEVDDCGEPGTADTFGIRTTSYVNGPSPLIGGNIQIHP*
Ga0137360_111508961	3300012361	Vadose Zone Soil	YNDHQADVRIKAQSVEGPVIRSPGDSCPMTPGSKHATIGGRATVIQSTGTTTEDFTVEVDDCGEPGTADTFGIKTETYSNGWPIPSTLTGGNIQIH*
Ga0137361_119182421	3300012362	Vadose Zone Soil	ISSPGTSCPATPGSKHAKFTGMAAVIRSTGTTTESFTVDVDDCGEPGMADTFGITTTTYSNGPSTLIGGNIQIHK*
Ga0137419_106409614	3300012925	Vadose Zone Soil	NLEYNDHDAGVRIKAQSIDNLFIGSGSCGPNTHATFIGTAQVIRSTGTTTEPFTVDVDDCGESGTADTFGIKTTTYSNGPSPLIGGNIQIHSQ*
Ga0137416_101238265	3300012927	Vadose Zone Soil	VKCCAATGNLEYNDHAADVRIKAQAIDGLVIGSPGTSCPATPGSQHARFTGTAEVIRSIGTTTEPFTVDVDDCGEPGTSDTFGIKTTTYSNGPSTLIGGNIQIH*
Ga0137410_118442882	3300012944	Vadose Zone Soil	AQSIDALKISSPGTSCPATPGSQHATFGGMASVIRSTGTTSEPFTVDVDDCGEPGTADTFGIKTTTYSNGPKPLTGGNIQIHKLSEISWRYHGAS*
Ga0134077_105211721	3300012972	Grasslands Soil	AGVRIKAQSIDTLVIGLGSCGADTHATFTGTAAVIRSVGTTTEPFTVEVDDCGEPGTVDKFGIKTASYSNGPTTLIGGNIQIHR*
Ga0134077_105651911	3300012972	Grasslands Soil	ESISGLFISSPGTSCPATPGSKRAKFTGMAEVIRSTGTTTEPFTVDVDDCGEPGMADTFAITTTTYSNGPSTLIGGNIQIHK*
Ga0134110_101917761	3300012975	Grasslands Soil	TFGFVATCCTARGNLDYNDHPMDVRIKAQSVDGLSISSPGASCTATPGSKHATFRGMASVIRSTGTTTEPFTVDVDDCGEPGTGDSFSIKTTTYSNGPSPLIGGNIQIH*
Ga0134075_101055613	3300014154	Grasslands Soil	GFVAKCCALSGNLEYNDHQADVRIKAQTVDGLFISSPGTSCPSTPGSKHATFTGMASVIRPIDTTNERYTVDVDDCGEPGTADTFGLKTATYSNPAIPLPPSTLIGGNIQIKN*
Ga0134075_104360191	3300014154	Grasslands Soil	EYNDHQADVRIKAQSVEGPVIRSPGDSCPTISGSKHATIGGRATVISSTGTETEDFTVEVDDCGEPGTADRFGIKTETYSNGWPIPSTLTGGNIQIKN*
Ga0137409_110805121	3300015245	Vadose Zone Soil	SVEGPVIRSPGDSCPATPGSKHATIGGTAKVIRSTGTTMEDFTVEVDDCGEPGTADTFGIKTDSYSNGWPVPSTLTGGNIQIHK*
Ga0137403_108466251	3300015264	Vadose Zone Soil	PVIRSPGDSCPTTPGSKHATIGGTATVIRSTGTATEDFTVEVDDCGEPGTADTFGIKTETYSNGWPMPSTLTGGNIQIKN*
Ga0184605_105349832	3300018027	Groundwater Sediment	GNLEYNDHGADVRIKSQSITRLIISNGPCGVNTHATFTGSASVIRSTGTTTQDFQVDVDDCTEPGKMDTFGIKTFGVPPYSSGPSTLMGGNIQIH
Ga0184619_101927721	3300018061	Groundwater Sediment	ATFGFVVKCCAATGNLEYQDQGADVRIKAESFDRLIISSPGRSCPLAPGSKHATITGMARVIQSGSTTTEPLTVEVDDCGEPGTADTFGIKTTTYSNGPSTLIGGNIQIH
Ga0184609_104830902	3300018076	Groundwater Sediment	NDHQAKVRIKAQTVDGLLISDVVCTTTPGKHATFTGIAKVIRPTGTTTERYTVDVDDCGEPGTEDTLGIKTTTYANGPSPLIAGNIQIHK
Ga0066655_110291112	3300018431	Grasslands Soil	ASFVFVILPGSPPTGNLDYKDHPMDVRIKALSYSSLSITNGSCGPLTHATFTGMASVIRSTGTTTEPFTVKADDCGEPGTGVDKFGITTTSYSNGPFTLISGNVQIH
Ga0066655_111492931	3300018431	Grasslands Soil	PGSKHAEFTGMASVISPTGTTTEPFTVKVDDCGEPGTADAFGIQTTGSTSYCNPIVCGTTTTLIGGNIQIR
Ga0066667_104090101	3300018433	Grasslands Soil	IKAQSISGLNISSPATACAATPGSQHATFFGTAEVIRPTGTTTEEFTVDVDDCGEPGTADTFGIKTMSYSNGPSTLIGGNIQIHK
Ga0184642_15710601	3300019279	Groundwater Sediment	LSVPALVVSSANPAANCTFGFTVKCCAPSGNLEYNDHTMDVRIKAQTIDGFFISTGACGPNTHATFTGTAQVIRSTGTTTEPFTVEVDDCGEPGTADTFGIRTTTYINGPTPLIGGNIQIHH
Ga0193730_11826322	3300020002	Soil	AKCCDPSGNLEYDDHGMGVRIKAQSIDGFFISTGPCGPNTHATFTGTAQVIRATGTTVERFTVDVDDCGEPGTADTFGIRTTSYVNGPSPLIGGNIQIHQ
Ga0179594_104299122	3300020170	Vadose Zone Soil	GLSITSPGTSCPGTPGSKHATFAGMAAVIRSTGTTDELFTVDVDDCGEPGTSDTFGIKTDTYSNPPFPLPPSTLIGGNIQIHN
Ga0182009_103225841	3300021445	Soil	GFTAKCCDPSGNLEYNDHTQDVRIKAQSVDGFFLSAGPCGPNTHATITGMAKVIRSTGTTVERFTVEVDDCGEPGTGDTFGIRTESYVNGPSPLIGGNIQIHP
Ga0207646_118535272	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	LEYNDHGMNVRIKAESITGLNISSPGSCASTPGSKHATFRGTAAVIRPTGTTHEPFTVDVDDCGEPGTSDTFGIKTTTYTSGPSTLIGGNIQIH
Ga0209237_12583981	3300026297	Grasslands Soil	IKAQSVDGLSISSPGASCTATPGSKHATFTGMAAVIRSTGTTMERFTVDVDDCGEPGTMDTFGIRTVSYVHPPSTLIGGNIQIH
Ga0209238_12763922	3300026301	Grasslands Soil	GFVVKCCPATGNLEYNDHQADVRIKAQSIDGLLISSPGDSCSATPGSKHATFTGMAAVIRSTGTTDEPFTVDVDDCGEPGTADTFGIKTDTYSNPPFPLPPSTLIGGNIKIHN
Ga0209761_100624710	3300026313	Grasslands Soil	VAKCCPATGNLEYNDHQADVRIKAQSVEGPVIRSPGDSCRTTPGSKHATIGGTATVIRSTGTATEDFTVEVDDCGEPGTADTFGIKTNTYSNGWPIPSTLTGGNIQIKN
Ga0209057_12029582	3300026342	Soil	SVEGPIIRSQRPGDSCPTIPGSKHATIGGRATVISSTGTETEDFTVEVDDCGEPGTADRFGIKTETYSNGWPIPSTLTGGNIQIKN
Ga0209160_11629701	3300026532	Soil	LITSPGTSCPAAAGTKHATFGGTAAVIRSSGTTHETFTVDVDDCGEPGTADTFGIKTDTYSNPPFPLPPSTLIGGNIKIHN
Ga0209376_12467931	3300026540	Soil	KAESISGLFISSPGTSCPATPGSKRAKFTGMAEVIRSTGTTTEPLTVDVDDCGEPGMADTFAITTTTYSNGPSTLIGGNIQIHK
Ga0209577_103974872	3300026552	Soil	SKATFGFVAKCCPASGNLDYNDHDAGVRIKAQSINNLFITSGSCGPNTHATFSGTAQVIRSTGTTTEPFTVEVDDCGEPGTADTFGIRTTTYSNGPSPLLGGNIQIRGQ
Ga0268264_100294295	3300028381	Switchgrass Rhizosphere	CCAASGNLEYDDHGANVRIKAQTINGLFISAGGCGPNTHATFTGTAQVIRSTGTTTESFTVDVDDCGEPGTADKFGIETATYSNASKTLIGGNIQIHK
Ga0307308_101335591	3300028884	Soil	DVRIKAQSIDGPVIRSQRPGDSCPTIPGSKHATIGGRATVISSTGTNTEDFTVEVDDCGEPGTADRFGIKTESYSNGWPIPSTLTGGNIQIH
Ga0308189_101076132	3300031058	Soil	MEVRTKVQSIDALSITTPGKSCPATPGSEHATFGGMADVIRPSVTTSEPFTVDVDDCGEPGTSDTFEIRTTGYSNGPRTLIGGNIQIH
Ga0308189_104063041	3300031058	Soil	NDKAADVRIKAESIDGLFISSSGVSCPTVPGSKHATFTGTAQVIRSTGTTTESFTVEVDDCGEPGTADTFGIRTTTYANGPSTLIGGNIQIK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F071678

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences