Metagenome Family F071704

Basic Information
Family ID	F071704
Family Type	Metagenome
Number of Sequences	122
Average Sequence Length	43 residues
Representative Sequence	MDRKLRNRTLLFLALAAIVAFVLVRLSGRQPVAKISATTPVRQ
Number of Associated Samples	111
Number of Associated Scaffolds	122

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	77.97 %
% of genes near scaffold ends (potentially truncated)	95.90 %
% of genes from short scaffolds (< 2000 bps)	90.98 %
Associated GOLD sequencing projects	107
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Most Common Taxonomy
Group	Bacteria (62.295 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (13.934 % of family members)
Environment Ontology (ENVO)	Unclassified (29.508 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.639 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 40.85% β-sheet: 0.00% Coil/Unstructured: 59.15%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 122 Family Scaffolds
PF00005	ABC_tran	54.92
PF13545	HTH_Crp_2	0.82
PF01894	UPF0047	0.82
PF12698	ABC2_membrane_3	0.82
PF03061	4HBT	0.82
PF02518	HATPase_c	0.82
PF16576	HlyD_D23	0.82

COG ID	Name	Functional Category	% Frequency in 122 Family Scaffolds
COG0432	Thiamin phosphate synthase YjbQ, UPF0047 family	Coenzyme transport and metabolism [H]	0.82

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.30 %
Unclassified	root	N/A	37.70 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.30 %
Unclassified	root	N/A	37.70 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.30 %
Unclassified	root	N/A	37.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.70 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	6.56 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	4.10 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.70 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	6.56 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	4.10 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.70 %
Opitutae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	5.74 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.10 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.70 %
Opitutales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales	5.74 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.10 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.70 %
Opitutaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	5.74 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.10 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.70 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.10 %
Opitutus	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus	3.28 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.70 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.10 %
Opitutus terrae	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → Opitutus terrae	3.28 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2199352024\|deeps_contig43132.27117	All Organisms → cellular organisms → Bacteria	1044	Open in IMG/M
3300002245\|JGIcombinedJ26739_100267275	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → Opitutus terrae	1597	Open in IMG/M
3300002245\|JGIcombinedJ26739_100440734	All Organisms → cellular organisms → Bacteria	1180	Open in IMG/M
3300003370\|JGI26337J50220_1036878	Not Available	557	Open in IMG/M
3300004080\|Ga0062385_10374553	All Organisms → cellular organisms → Bacteria	843	Open in IMG/M
3300004152\|Ga0062386_100579703	All Organisms → cellular organisms → Bacteria	916	Open in IMG/M
3300005332\|Ga0066388_106062973	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300005332\|Ga0066388_107778762	Not Available	537	Open in IMG/M
3300005445\|Ga0070708_100974452	All Organisms → cellular organisms → Bacteria	795	Open in IMG/M
3300005553\|Ga0066695_10087864	All Organisms → cellular organisms → Bacteria	1895	Open in IMG/M
3300006028\|Ga0070717_10827916	All Organisms → cellular organisms → Bacteria	842	Open in IMG/M
3300006050\|Ga0075028_100432681	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300006052\|Ga0075029_100287061	All Organisms → cellular organisms → Bacteria	1047	Open in IMG/M
3300006163\|Ga0070715_10239892	All Organisms → cellular organisms → Bacteria	942	Open in IMG/M
3300006176\|Ga0070765_101103122	All Organisms → cellular organisms → Bacteria	750	Open in IMG/M
3300006176\|Ga0070765_101326932	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300006176\|Ga0070765_102245973	Not Available	509	Open in IMG/M
3300006871\|Ga0075434_100416100	All Organisms → cellular organisms → Bacteria	1365	Open in IMG/M
3300006903\|Ga0075426_11461423	Not Available	519	Open in IMG/M
3300007076\|Ga0075435_100823886	All Organisms → cellular organisms → Bacteria	808	Open in IMG/M
3300009143\|Ga0099792_10363064	All Organisms → cellular organisms → Bacteria	877	Open in IMG/M
3300009522\|Ga0116218_1389210	Not Available	622	Open in IMG/M
3300009523\|Ga0116221_1275730	Not Available	727	Open in IMG/M
3300010043\|Ga0126380_10393790	All Organisms → cellular organisms → Bacteria	1026	Open in IMG/M
3300010043\|Ga0126380_10790671	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
3300010048\|Ga0126373_12862151	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	538	Open in IMG/M
3300010333\|Ga0134080_10222793	All Organisms → cellular organisms → Bacteria	824	Open in IMG/M
3300010359\|Ga0126376_10890112	All Organisms → cellular organisms → Bacteria	879	Open in IMG/M
3300010360\|Ga0126372_10159339	All Organisms → cellular organisms → Bacteria	1818	Open in IMG/M
3300010360\|Ga0126372_12077356	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300010361\|Ga0126378_12981746	Not Available	540	Open in IMG/M
3300010361\|Ga0126378_13323555	Not Available	511	Open in IMG/M
3300010366\|Ga0126379_10641464	All Organisms → cellular organisms → Bacteria	1151	Open in IMG/M
3300010401\|Ga0134121_12929305	Not Available	524	Open in IMG/M
3300011271\|Ga0137393_11618341	Not Available	537	Open in IMG/M
3300012202\|Ga0137363_11274107	Not Available	623	Open in IMG/M
3300012205\|Ga0137362_10454887	All Organisms → cellular organisms → Bacteria	1108	Open in IMG/M
3300012206\|Ga0137380_10779200	Not Available	826	Open in IMG/M
3300012363\|Ga0137390_10108686	All Organisms → cellular organisms → Bacteria	2744	Open in IMG/M
3300012917\|Ga0137395_10730435	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300012922\|Ga0137394_10920772	Not Available	729	Open in IMG/M
3300012925\|Ga0137419_10521351	All Organisms → cellular organisms → Bacteria	946	Open in IMG/M
3300012930\|Ga0137407_11069040	Not Available	765	Open in IMG/M
3300012931\|Ga0153915_10295583	All Organisms → cellular organisms → Bacteria	1807	Open in IMG/M
3300012931\|Ga0153915_12238214	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300012944\|Ga0137410_10307136	All Organisms → cellular organisms → Bacteria	1258	Open in IMG/M
3300015053\|Ga0137405_1204851	All Organisms → cellular organisms → Bacteria	738	Open in IMG/M
3300015167\|Ga0167661_1046655	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300015197\|Ga0167638_1031542	All Organisms → cellular organisms → Bacteria	1211	Open in IMG/M
3300015264\|Ga0137403_10155467	All Organisms → cellular organisms → Bacteria	2250	Open in IMG/M
3300016270\|Ga0182036_10708490	All Organisms → cellular organisms → Bacteria	815	Open in IMG/M
3300016319\|Ga0182033_11177116	Not Available	686	Open in IMG/M
3300016387\|Ga0182040_10791478	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	781	Open in IMG/M
3300016404\|Ga0182037_11664298	Not Available	568	Open in IMG/M
3300016422\|Ga0182039_10040237	All Organisms → cellular organisms → Bacteria	3097	Open in IMG/M
3300016422\|Ga0182039_11853914	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300017822\|Ga0187802_10455031	Not Available	508	Open in IMG/M
3300017930\|Ga0187825_10420192	Not Available	516	Open in IMG/M
3300017933\|Ga0187801_10171964	All Organisms → cellular organisms → Bacteria	850	Open in IMG/M
3300017934\|Ga0187803_10156469	All Organisms → cellular organisms → Bacteria	896	Open in IMG/M
3300017947\|Ga0187785_10732992	Not Available	521	Open in IMG/M
3300017955\|Ga0187817_10196958	All Organisms → cellular organisms → Bacteria	1284	Open in IMG/M
3300017959\|Ga0187779_10971299	Not Available	588	Open in IMG/M
3300017973\|Ga0187780_10734069	Not Available	713	Open in IMG/M
3300017974\|Ga0187777_10527545	All Organisms → cellular organisms → Bacteria	827	Open in IMG/M
3300018062\|Ga0187784_10735656	All Organisms → cellular organisms → Bacteria	788	Open in IMG/M
3300018085\|Ga0187772_10141359	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → Opitutus terrae	1585	Open in IMG/M
3300018088\|Ga0187771_10052954	All Organisms → cellular organisms → Bacteria	3168	Open in IMG/M
3300020170\|Ga0179594_10133390	All Organisms → cellular organisms → Bacteria	911	Open in IMG/M
3300020580\|Ga0210403_11059527	Not Available	632	Open in IMG/M
3300020581\|Ga0210399_11079356	Not Available	643	Open in IMG/M
3300020582\|Ga0210395_11136186	Not Available	576	Open in IMG/M
3300021168\|Ga0210406_11134048	Not Available	573	Open in IMG/M
3300021178\|Ga0210408_10257920	All Organisms → cellular organisms → Bacteria	1389	Open in IMG/M
3300021178\|Ga0210408_11044369	Not Available	631	Open in IMG/M
3300021407\|Ga0210383_10516043	All Organisms → cellular organisms → Bacteria	1031	Open in IMG/M
3300021477\|Ga0210398_10024071	All Organisms → cellular organisms → Bacteria	5159	Open in IMG/M
3300021478\|Ga0210402_10519783	All Organisms → cellular organisms → Bacteria	1105	Open in IMG/M
3300024271\|Ga0224564_1116129	Not Available	547	Open in IMG/M
3300025409\|Ga0208321_1009088	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2070	Open in IMG/M
3300025419\|Ga0208036_1015404	All Organisms → cellular organisms → Bacteria	1662	Open in IMG/M
3300026324\|Ga0209470_1380605	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	504	Open in IMG/M
3300026555\|Ga0179593_1145939	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	1723	Open in IMG/M
3300026557\|Ga0179587_10503802	All Organisms → cellular organisms → Bacteria	794	Open in IMG/M
3300026890\|Ga0207781_1015943	Not Available	772	Open in IMG/M
3300026979\|Ga0207817_1006129	All Organisms → cellular organisms → Bacteria	1438	Open in IMG/M
3300027014\|Ga0207815_1005986	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	1642	Open in IMG/M
3300027024\|Ga0207819_1041075	Not Available	563	Open in IMG/M
3300027334\|Ga0209529_1026368	All Organisms → cellular organisms → Bacteria	990	Open in IMG/M
3300027376\|Ga0209004_1013349	All Organisms → cellular organisms → Bacteria	1246	Open in IMG/M
3300027812\|Ga0209656_10167636	All Organisms → cellular organisms → Bacteria	1087	Open in IMG/M
3300027857\|Ga0209166_10335201	All Organisms → cellular organisms → Bacteria	792	Open in IMG/M
3300027910\|Ga0209583_10158796	All Organisms → cellular organisms → Bacteria	931	Open in IMG/M
3300028021\|Ga0265352_1012400	Not Available	567	Open in IMG/M
3300028381\|Ga0268264_10428593	All Organisms → cellular organisms → Bacteria	1277	Open in IMG/M
3300028906\|Ga0308309_10409912	All Organisms → cellular organisms → Bacteria	1163	Open in IMG/M
3300029882\|Ga0311368_10328561	All Organisms → cellular organisms → Bacteria	1148	Open in IMG/M
3300030013\|Ga0302178_10481583	Not Available	543	Open in IMG/M
3300030687\|Ga0302309_10289074	Not Available	816	Open in IMG/M
3300031564\|Ga0318573_10381714	Not Available	757	Open in IMG/M
3300031713\|Ga0318496_10505204	Not Available	668	Open in IMG/M
3300031715\|Ga0307476_10663168	Not Available	773	Open in IMG/M
3300031718\|Ga0307474_11631479	Not Available	506	Open in IMG/M
3300031720\|Ga0307469_10139078	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1795	Open in IMG/M
3300031823\|Ga0307478_10554668	All Organisms → cellular organisms → Bacteria	960	Open in IMG/M
3300031833\|Ga0310917_10876660	Not Available	604	Open in IMG/M
3300031890\|Ga0306925_11477560	Not Available	666	Open in IMG/M
3300031946\|Ga0310910_10117805	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → Opitutus terrae	1995	Open in IMG/M
3300031946\|Ga0310910_10715960	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300031959\|Ga0318530_10232110	Not Available	759	Open in IMG/M
3300031962\|Ga0307479_10351031	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	1458	Open in IMG/M
3300032041\|Ga0318549_10382254	Not Available	635	Open in IMG/M
3300032180\|Ga0307471_102067964	All Organisms → cellular organisms → Bacteria	715	Open in IMG/M
3300032261\|Ga0306920_101236776	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1077	Open in IMG/M
3300032783\|Ga0335079_10064988	All Organisms → cellular organisms → Bacteria	4156	Open in IMG/M
3300032892\|Ga0335081_11420066	Not Available	774	Open in IMG/M
3300033289\|Ga0310914_11895487	Not Available	501	Open in IMG/M
3300033402\|Ga0326728_10270003	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → Opitutus terrae	1592	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.90%
Host-Associated	Host-Associated	4.10%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	82.79%
Aquatic	Environmental → Aquatic	13.11%
Plants	Host-Associated → Plants	4.10%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	79.51%
Freshwater	Environmental → Aquatic → Freshwater	10.66%
Peat	Environmental → Terrestrial → Peat	3.28%
Sediment	Environmental → Aquatic → Sediment	2.46%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.46%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.64%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	57.38%
Loam	Environmental → Terrestrial → Soil → Loam	14.75%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	10.66%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.38%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.28%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.46%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.46%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.64%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.51%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	26.23%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.48%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.38%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	4.10%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.28%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	3.28%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.28%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.28%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.46%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.46%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.64%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.64%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.93%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	13.11%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.20%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.56%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	5.74%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.92%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	4.10%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.28%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.28%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.28%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.28%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.46%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	2.46%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.46%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.64%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	1.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.64%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	1.64%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.64%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.64%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.82%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.82%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.82%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.82%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.82%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.82%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2199352024	Bare-fallow DEEP SOIL	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003370	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015167	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-11b, vegetated hydrological feature)	Environmental	Open in IMG/M
3300015197	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G6B, Proglacial plain, adjacent to northern proglacial tributary)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300024271	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU5	Environmental	Open in IMG/M
3300025409	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_150 (SPAdes)	Environmental	Open in IMG/M
3300025419	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_100 (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300026890	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 51 (SPAdes)	Environmental	Open in IMG/M
3300026979	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 13 (SPAdes)	Environmental	Open in IMG/M
3300027014	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 4 (SPAdes)	Environmental	Open in IMG/M
3300027024	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 42 (SPAdes)	Environmental	Open in IMG/M
3300027334	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O2 (SPAdes)	Environmental	Open in IMG/M
3300027376	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300028021	Soil microbial communities from Maridalen valley, Oslo, Norway - NSE5	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029882	III_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030013	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_3	Environmental	Open in IMG/M
3300030687	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_1	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
deeps_00063490	2199352024	Soil	MDQRKVRNRILIFLVLAGVVAYVLVRLSGREPVAKIAAVSPVRDNLVSSIS
JGIcombinedJ26739_1002672751	3300002245	Forest Soil	MDQRKLRNRILLFLVVAAIVAYVLVRLSGREPVVKIAAVTPVRD
JGIcombinedJ26739_1004407341	3300002245	Forest Soil	MDKRFRNRTILLLIGAAVLAFVLVRLSGRQPVAKISAMIPGRQNIISSVTSNG
JGI26337J50220_10368781	3300003370	Bog Forest Soil	MDRRLRNRIVIFLVLAGVAAFVLVKLSGRQPVAKISAVAPIREDLASSI
Ga0062385_103745531	3300004080	Bog Forest Soil	MEKKLRNRVLLFLALAAIAAFVLVKISGRQPVAKIAATRPLRENIISSVSS
Ga0062386_1005797031	3300004152	Bog Forest Soil	MDKKLRNRTLLFLLLVGIVVFVLIHWSGRQPVAKISAVRPVRQNVVASITSN
Ga0066388_1060629732	3300005332	Tropical Forest Soil	MDRRLRNRILLFLLAAGILAYVLVLLSGRQPVTKLSATFPTREN
Ga0066388_1077787622	3300005332	Tropical Forest Soil	MERKLRNRILIFLALAAVVAFVLVKLSGRQPVAKIMAVKPVRENLVASVSSN
Ga0070708_1009744521	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MDRRLRNRILLFLLAAGILAYVLVLLSGRQPVAKLSATYP
Ga0066695_100878644	3300005553	Soil	MDRRLRNRILLFLVLAAAAAYGLYRLSGRQPAAKIAA
Ga0070717_108279162	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MDRRLRNRILLILLAAGILAYVLLLLSGRQPVAKLSA
Ga0075028_1004326812	3300006050	Watersheds	MDRKLRNRILIFLAIAGVVAYGLVRLSGRQPVAKISVIQPIRETLVS
Ga0075029_1002870611	3300006052	Watersheds	MDKKFRNRTLLLLLLAGILAFFLIRASGKQPVAKISAMQPVREDIVSSIS
Ga0070715_102398922	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MERKLRNRILIFLAAAGIVAYLLVRLSGRQPVARIMAVKPVRENLVASVSTNG
Ga0070765_1011031221	3300006176	Soil	MDRRLRNRIVILLLLAGAAAPFLVWLSGRKPAAKI
Ga0070765_1013269322	3300006176	Soil	MDRKLRNRILIFLVLAGIVAFALIRFSGRQPVAKIFAV
Ga0070765_1022459731	3300006176	Soil	MDRRLRNRILIFLALAGASALVLIKVSGRQPLAKISAVTPV
Ga0075434_1004161001	3300006871	Populus Rhizosphere	VDRRLRNRILIFLLLAGIAAIVLISLSGRQPVAKISAVMPV
Ga0075426_114614231	3300006903	Populus Rhizosphere	MERKLRNRILIFLVAAGIVAFLLVRLSGRQPIAKIMAVKPV
Ga0075435_1008238861	3300007076	Populus Rhizosphere	MERKLRNRVLIFLLVAGIVAFVLVRISGRQPVAKISAMTPKRQN
Ga0099792_103630641	3300009143	Vadose Zone Soil	MDRRLRNRIVIFLVLAAIVAFVLVRLSGRQPVAKISAVTP
Ga0116218_13892102	3300009522	Peatlands Soil	MDRKLRNRTLLLLGLAAVVAFVLIRVSGHQPVAKISATSPVRQNITLLIS
Ga0116221_12757303	3300009523	Peatlands Soil	MDKKLRNRVLVFLLLAGIVAFLLVRVSGRQPVAKIS
Ga0126380_103937902	3300010043	Tropical Forest Soil	MDRRLRNRILVFLLAAGILAYVLVLMSGRQPVAKLSATYATRE
Ga0126380_107906711	3300010043	Tropical Forest Soil	MERKLRNRILIFLALAAVVAFVLVRLSGRQPVARIMVVKPVRENLVASV
Ga0126373_128621511	3300010048	Tropical Forest Soil	MDRRLRNRILLFLLAAGISAYVLVLLSGRQPVAKLSATVPTRENIVSSVS
Ga0134080_102227931	3300010333	Grasslands Soil	MERKLRNRILIFLAAAGIVAYLLVRLSGRQPVAKVMAVRP
Ga0126376_108901121	3300010359	Tropical Forest Soil	MDRKLRNRILLFLVLAAIAATALISLSGRQPVAKISAVLPVRENI
Ga0126372_101593391	3300010360	Tropical Forest Soil	MDRKLRNRTLLFLALAAIVAFVLVRLSGRQPVAKISATTPVRQNIVSSIISN
Ga0126372_120773561	3300010360	Tropical Forest Soil	MERKLRNRILIFLALAAVVAFVLVKLSGRQPVAKIMAVKPVREN
Ga0126378_129817462	3300010361	Tropical Forest Soil	MDRKLRNRTLLLLVLAGIIAFVLVRISGRQPVAKIAATRPVRQ
Ga0126378_133235551	3300010361	Tropical Forest Soil	MDRRLRNRILIFLFAAGVLAYVLVLLSGRQPVAKLSATYPTREN
Ga0126377_124396871	3300010362	Tropical Forest Soil	MDRRLRNRILFYLLGAGVLAYVLFLLSGRQPVAKLSAV
Ga0126379_106414643	3300010366	Tropical Forest Soil	MDKKLRNRTLLFLLAAGIVAFVLIKISERQPVAKIAAVRPFRQ
Ga0134121_129293051	3300010401	Terrestrial Soil	MDRRLRNKIVLFLLAAALVAYGLVWLSGRQPVAKIAAVTPM
Ga0137393_116183412	3300011271	Vadose Zone Soil	MDRRLRNRIVIFLILAAVVAIVLVRLSGRQPVAKISAVTP
Ga0137363_112741071	3300012202	Vadose Zone Soil	MDRRFRNRILIFLLLATVAAFALVELSGRKPVAKISAVTPTREN
Ga0137362_104548871	3300012205	Vadose Zone Soil	MDRRLRNRIILFLALAAVAAVILVRLSGRQPVAKISAVTPV
Ga0137380_107792003	3300012206	Vadose Zone Soil	MDRRLRNRILLFLVLAAAAAYGLYRLSGRQPAAKIA
Ga0137390_101086861	3300012363	Vadose Zone Soil	MDRRLRNRIVILLVLAGIVAYALVRLTGRQPVAKISAVTPVREN
Ga0137395_107304352	3300012917	Vadose Zone Soil	MDRRLRNRILIFLALAAIVAFALVRLSGRQPVAKISAVTPIRENVISSISS
Ga0137394_109207721	3300012922	Vadose Zone Soil	MDRRLRNRILLILLAAGILAYMLLLLSGRQPVAKLSAVTPTRENIVS
Ga0137419_105213511	3300012925	Vadose Zone Soil	MDRRLRNRILLILLAAGILAYLLLLLSGRQPVAKLSAVKPT
Ga0137407_110690402	3300012930	Vadose Zone Soil	MIGFQEFMDKKLRNRTLLFLLLAGIVAFVLIKVSGRQPVAKIS
Ga0153915_102955831	3300012931	Freshwater Wetlands	MERKLRNRILLFLLLAGVIAYLLVRISGRQPVAKI
Ga0153915_122382142	3300012931	Freshwater Wetlands	MERKLRNRILLFLLLAGVIAYLLVRISGRQPVAKIAAVLPARENLVASISSN
Ga0137410_103071361	3300012944	Vadose Zone Soil	MDRRLRNRVLIFLALAAIVAFALVRLSGRQPVAKISAVTPIRENVISSI
Ga0137405_12048511	3300015053	Vadose Zone Soil	MERKLRNRILIFLAAAGIVIFLAAAGIVAYLLVRLSGRQP
Ga0167661_10466551	3300015167	Glacier Forefield Soil	MDQRKVRNRILIFLALAAIVAYALVRLSGREPVVKIAAVMPVL
Ga0167638_10315422	3300015197	Glacier Forefield Soil	MDQRKLRNRILLFLLVAGIVAYALVRLSGREPVVKIAAVTPV
Ga0137403_101554674	3300015264	Vadose Zone Soil	LIFLLLAGIAAIVLISLSGRQPVAKISAVMPVRENIVASL
Ga0182036_107084902	3300016270	Soil	MDRRLRNRILIFLFAAGVLAYLLVLLSGRQPVAKLSA
Ga0182033_111771161	3300016319	Soil	MDRKLRNRTLLFLALAAVVAFVLVRLSGRQPVAKISATTPVRQNIVSSVS
Ga0182040_107914781	3300016387	Soil	MERKLRNRVLIFLLVAGIVAFVLVRMSGRQPVAKISAMTPKRQNIVSSISSN
Ga0182037_116642982	3300016404	Soil	MDRKLRNRTLLFLALAAVVAFALVRLSGRQPVAKISATTPVRQNIVSSV
Ga0182039_100402374	3300016422	Soil	MDRKLRNRALLFLALAGIVAFALVRLSGRQPVAKISAT
Ga0182039_118539141	3300016422	Soil	MDRRLRNRILVFLLAAGILAYVLILLSGRQPVAKLSATY
Ga0187802_104550312	3300017822	Freshwater Sediment	MDRKLRNRTLLLLGLAAVVAFVLVRVSGRQPIAKISAARPVRQNIVSSTSSN
Ga0187825_104201922	3300017930	Freshwater Sediment	MDRRLTRRTLLLLALAAVVAFVLIRVSGRQPVAKISATSPV
Ga0187801_101719643	3300017933	Freshwater Sediment	MDERLQLIMDRKLRNRTLLLLGLAAVVAFVLIRVSGRQPVAKISATSPVRQNIMSSIG
Ga0187803_101564691	3300017934	Freshwater Sediment	MDRRLTRRTLLLLALAAVVAFVLIRVSGRQPVAKISATSPVRQ
Ga0187785_107329922	3300017947	Tropical Peatland	MDKTLRNRTLLFLLLAGIVAFVLVRVSGRQPVAKISAVRPVRQNIVSSI
Ga0187817_101969581	3300017955	Freshwater Sediment	MDKTLRNRLLVFLLVAGIVAYYLVWVSGRQPVAKISATTPV
Ga0187779_109712992	3300017959	Tropical Peatland	MAAQLQDFMERKLRNRVLIFLLVAGIVAFVLVRISGRQPVAKISAMTPMRQNIV
Ga0187780_107340691	3300017973	Tropical Peatland	MDKKLRNRLVVFLLLAGIVAFVLVRISGRQPVAKVSATTP
Ga0187777_105275452	3300017974	Tropical Peatland	MDKKLRNRTLFLLVLAGIVAFVLVRISGRQPVAKIAATRPVRQNIAS
Ga0187784_107356561	3300018062	Tropical Peatland	MDKKLRNRTISLLVLAALLAFVLIHVSGRQPVAKISASRP
Ga0187772_101413591	3300018085	Tropical Peatland	MDRKLRNWTLLLLGLAAVVAFVLVRVSGRQPVAKI
Ga0187771_100529544	3300018088	Tropical Peatland	MDKRWRNRTLLLLGLAALAVIVLMRVSGRQPVAKISVTAPVRQDIVSSIIS
Ga0179594_101333902	3300020170	Vadose Zone Soil	MDQRKVRNRILICLVLAGVVAYVLVRLSGREPVAKIAAVSPVRDNV
Ga0210403_110595271	3300020580	Soil	MDRRLRNRILIFLVLAAVVAFALVRLSGRQPVAKISAVSPIRENVISSISS
Ga0210399_110793561	3300020581	Soil	MDRKLRNRILIFLVLAGIVAFTLIRFSGRQPVAKILAVTPIRANVVSSISSN
Ga0210395_111361862	3300020582	Soil	MLRNRVLILLGLAAIIAFVLVKVSGRQPVAKISATTPV
Ga0210406_111340481	3300021168	Soil	MDRRLRNRIVIFLVLAAIVAFVLVRLTGRQPVAKIAAVTP
Ga0210408_102579203	3300021178	Soil	MDKKLRNRTLLFLLLAGIVAFALIKYSGHQPVAKISA
Ga0210408_110443691	3300021178	Soil	MDRRLRNRIVIFLVLAAVVAFALVRLSGRQPVAKISAVTPVRENLISS
Ga0210383_105160432	3300021407	Soil	MDKKLRNRTLLFLLLVVIVVIVFIKVSGRQPAAKISAVKPFRENI
Ga0210398_100240711	3300021477	Soil	MDQRKLRNRILLFLVVAGIVAYVLVRLSGREPVAKIAAVTPVRDNLVSS
Ga0210402_105197832	3300021478	Soil	MLRNRVLILLGLAAIIAFVLVRVSGRQPVAKISATT
Ga0224564_11161291	3300024271	Soil	MDRRLRNRIVILLLLAGAAAPLLVWLSGRKPAAKISAMTP
Ga0208321_10090881	3300025409	Peatland	MDKKLRNRVFAFLLLAGIVAFLLVRISGRPPVAKISATTPVRRNIVASIS
Ga0208036_10154041	3300025419	Peatland	MDKKLRNRVFAFLLLAGIVAFLLVRISGRPPVAKIS
Ga0207693_109915712	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MDRRLRNRILLILLAAGILAYVLLLLSGRQPVAKL
Ga0207641_105940661	3300026088	Switchgrass Rhizosphere	MDRRLRNRILLFLLAAGILAYVLVLLSGRKPVAKLSATYPTRENIV
Ga0209470_13806051	3300026324	Soil	MDRRLRNRLLFFLLAAAILAYLLFLLSGRQPVTKLSAVVPSHE
Ga0179593_11459391	3300026555	Vadose Zone Soil	MDKKLRNRTLLLLLLAGIVAFVLIKVSGRQPVAKISAVKPFRHNI
Ga0179587_105038021	3300026557	Vadose Zone Soil	MDRRLRNRILIFLALAAIAAFILVRLSGRQPVAKISAVLPIREN
Ga0207781_10159431	3300026890	Tropical Forest Soil	MDRKLRNRTLLFLALAGIVAFVLVRLSGRQPVAKISATTPVRQNIVSS
Ga0207817_10061292	3300026979	Tropical Forest Soil	MDRKLRNRTLLFLALAGIVAFVLVRLSGRQPVAKISATTPVRQNI
Ga0207815_10059861	3300027014	Tropical Forest Soil	MDRKLRNRTLLFLALAAIVAFVLVRLSGRQPVAKISAT
Ga0207819_10410751	3300027024	Tropical Forest Soil	MDRKLRNRTILFLLLAGIVAFILVRASGRQPVAKISAMRPARENIVSSV
Ga0209529_10263681	3300027334	Forest Soil	MDRRLRNRILIFLLAATVLALILIKVSGRQPVAKISAVTPIRQNIIASIS
Ga0209004_10133491	3300027376	Forest Soil	MDKKLRNRTLLFLLLAGIVAFVLIKVSGRQPAAKISA
Ga0209656_101676361	3300027812	Bog Forest Soil	MEKKLRNRVLIFLLVAGIVAYVLVRVSGRQPVAKIT
Ga0209166_103352013	3300027857	Surface Soil	MERKLRNRILIFLVAAGIVAYLLVRLSGRQPVARIMAVKPVRENLVASVST
Ga0209583_101587961	3300027910	Watersheds	MDKKLRNRTLLFLLLAGFVAFVLIKVSGRQPVAKISAVKPFRQN
Ga0265352_10124002	3300028021	Soil	MERRLRNRIVISLLLAVVAAIFLVWLSGRKPAAKISAV
Ga0268264_104285931	3300028381	Switchgrass Rhizosphere	MDRRLRNRILVFLLAAGILAYVLVLLSGRQPVAKL
Ga0308309_104099122	3300028906	Soil	MDRRLRNRIVIFLLLAGVLALVLIKVSGRQPVAKISAVTPVRENI
Ga0311368_103285612	3300029882	Palsa	MERVLRNRILIFLVLAAVGAVVLIRLSGRQPVAKITAVRPVRQNIVAFI
Ga0302178_104815831	3300030013	Palsa	MERVLRNRILIFLVLAAVGAVVLIRLSGRQPVAKITAVRPVR
Ga0302309_102890742	3300030687	Palsa	MDHRLRNRILIFLALAAVAAYALVRLSGRQPVAKISAVTPIREN
Ga0170818_1092418153	3300031474	Forest Soil	MDRRLRNRILLILLAAGILAYMLLLLSGRQPVAKLSAVKP
Ga0318573_103817141	3300031564	Soil	MDRKLRNRTLVLLVVAGVIAFILVKLSGKQPVAKIAATVPVR
Ga0318496_105052042	3300031713	Soil	MDRKLRNRTLLFLALAAVVAFVLVRLSGRQPVAKISATTPVRQNIVSSVSS
Ga0307476_106631681	3300031715	Hardwood Forest Soil	MDRKLRNRTLLFLALAAIVAFVLVRLSGRQPVAKISATTPVRQ
Ga0307474_116314791	3300031718	Hardwood Forest Soil	MDRRLRNRILIFLVLAGATALVLIRVSGRQPVAKISAVTPVRENIIASI
Ga0307469_101390781	3300031720	Hardwood Forest Soil	MDRRLRNRIVIFLVLAGIVAFALVRLSGRQPVAKISAVSPMRE
Ga0307478_105546681	3300031823	Hardwood Forest Soil	MDRRLRNRIVIFLALAAVAVFVLVRLTGRQPVAKIAAV
Ga0310917_108766601	3300031833	Soil	MDRKLRNRTLLFLALAAVVAFALVRLSGRQPVAKI
Ga0306925_114775601	3300031890	Soil	MDRKLRNRTLLFLALAAVVAFALVRLSGRQPVAKIS
Ga0310910_101178053	3300031946	Soil	MDRKLRNRTLVLLALAAVTAFILIRVSGRQPVAKIAATR
Ga0310910_107159601	3300031946	Soil	MDKKLRNRTLLFLLLAGIAVFAFIRLSNRQPVAKIAAVLPVRQNIV
Ga0318530_102321101	3300031959	Soil	MDRKLRNRTLLFLALAAVVAFALVRLSGRQPVAKISATTPVRQNIVSSVSSN
Ga0307479_103510311	3300031962	Hardwood Forest Soil	MDRRLRNRIVIFLVLAAIVAFVLVRLTGRQPVAKIAA
Ga0318549_103822541	3300032041	Soil	MDRRLRNRILIFLFASGVLAYVLVLLSGRQPVAKL
Ga0307471_1020679642	3300032180	Hardwood Forest Soil	MDRRLRNRIVIFLVLAAVAVIVLVRLTGRQPVAKI
Ga0306920_1012367762	3300032261	Soil	MDRRLRNRILIFLFAAGVLAYLLVLLSGRQPVAKLSATYPPAKISSPP
Ga0335079_100649885	3300032783	Soil	MDRKLRNRIVFFLLGAGVVAFVLVKLSGRQPVAKISAVTPMREN
Ga0335081_114200662	3300032892	Soil	MDRKLRNRALILLGFAAIIAFALVRLSGRQPVAKIAATR
Ga0310914_118954871	3300033289	Soil	MDRKLRNRTLVLLALAAVTAFILIRVSGRQPVAKIA
Ga0326728_102700033	3300033402	Peat Soil	MDKKLRNRVLVFLLLAGIVAYLLVRISGRQPVAKISA

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F071704

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign