Metagenome Family F071823

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F071823
Family Type	Metagenome
Number of Sequences	121
Average Sequence Length	41 residues
Representative Sequence	VAQLVKNLPAMWETWVRSLGWEDPLEKGTATHSSILAWRIP
Number of Associated Samples	10
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	0.83 %
% of genes from short scaffolds (< 2000 bps)	0.83 %
Associated GOLD sequencing projects	9
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.28

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (99.174 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Unclassified → Unclassified → Continental Margin Sediment (90.909 % of family members)
Environment Ontology (ENVO)	Unclassified (90.909 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Sediment (saline) (90.909 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.83% β-sheet: 0.00% Coil/Unstructured: 52.17%
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Predicted 3D Structure

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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.28
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.28
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF00078	RVT_1	0.83
PF01965	DJ-1_PfpI	0.83
PF00528	BPD_transp_1	0.83

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.17 %
All Organisms	root	All Organisms	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.17 %
cellular organisms	root	All Organisms → cellular organisms	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.17 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.17 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.17 %
Metazoa	kingdom	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.17 %
Eumetazoa	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.17 %
Bilateria	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.17 %
Deuterostomia	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.17 %
Chordata	phylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.17 %
Craniata	subphylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.17 %
Vertebrata	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.17 %
Gnathostomata	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.17 %
Teleostomi	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.17 %
Euteleostomi	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.17 %
Sarcopterygii	superclass	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.17 %
Dipnotetrapodomorpha	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.17 %
Tetrapoda	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.17 %
Amniota	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.17 %
Mammalia	class	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.17 %
Theria	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.17 %
Eutheria	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.17 %
Boreoeutheria	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.17 %
Laurasiatheria	superorder	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Laurasiatheria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.17 %
Artiodactyla	order	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Laurasiatheria → Artiodactyla	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300016461\|Ga0126362_10400635	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Laurasiatheria → Artiodactyla	541	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.91%
Engineered	Engineered	5.79%
Host-Associated	Host-Associated	3.31%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	90.91%
Bioreactor	Engineered → Bioreactor	4.96%
Mammals	Host-Associated → Mammals	3.31%
Wastewater	Engineered → Wastewater	0.83%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	90.91%
Digestive System	Host-Associated → Mammals → Digestive System	3.31%
Aerobic	Engineered → Bioreactor → Aerobic	3.31%
Anaerobic	Engineered → Bioreactor → Anaerobic	1.65%
Activated Sludge	Engineered → Wastewater → Activated Sludge	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Unclassified	90.91%
Unclassified	Engineered → Bioreactor → Aerobic → Unclassified	3.31%
Large Intestine	Host-Associated → Mammals → Digestive System → Large Intestine	1.65%
Foregut	Host-Associated → Mammals → Digestive System → Foregut	1.65%
Unclassified	Engineered → Bioreactor → Anaerobic → Unclassified	1.65%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	90.91%
Unclassified	Engineered → Bioreactor → Aerobic → Unclassified → Unclassified	3.31%
Fecal	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal	1.65%
Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen	1.65%
Unclassified	Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified	1.65%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Continental Margin Sediment	Environmental → Aquatic → Marine → Unclassified → Unclassified → Continental Margin Sediment	90.91%
Food Waste	Engineered → Bioreactor → Aerobic → Unclassified → Unclassified → Food Waste	3.31%
Goat Feces	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces	1.65%
Cattle And Sheep Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen	0.83%
Sheep Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Sheep Rumen	0.83%
Activated Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge	0.83%
Anaerobic Digester Digestate	Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Digester Digestate	0.83%
Food Waste	Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Food Waste	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300012007	Sheep rumen microbial communities from Wyoming, USA - O_aries_Forg_1009	Host-Associated	Open in IMG/M
3300014833	Activated sludge microbial communities from Shanghai, China - wastewater treatment plant - influent sewage	Engineered	Open in IMG/M
3300016461	Continental margin sediment microbial communities from China - ANME2c_DSS_Sorted metaG	Environmental	Open in IMG/M
3300018493	Goat fecal pellet fungal communities from Santa Barbara, California, USA ? pellet 3	Host-Associated	Open in IMG/M
3300020818	Food waste and fibre mixture microbial community, University of Toronto, Ontario, Canada - LBfeed2	Engineered	Open in IMG/M
3300021426	Sheep rumen microbial communities from New Zealand - Tag 1435 SPADES assembly	Host-Associated	Open in IMG/M
3300021982	Food waste microbial community from Durham, Ontario, Canada - FW1 spades	Engineered	Open in IMG/M
3300023280	Combined Assembly of Gp0238881, Gp0242115	Engineered	Open in IMG/M
3300023291	Food waste and fibre mixture microbial community, University of Toronto, Ontario, Canada. Combined Assembly of Gp0242115, Gp0242119	Engineered	Open in IMG/M
3300029799	Metagenomes from anaerobic digester of solid waste, Toronto, Canda. Combined Assembly of Gp0238878, Gp0238879, Gp0242100, Gp0242119	Engineered	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0120382_10615692	3300012007	Sheep Rumen	VVKNQPAMPETQEVQVGSLGQEDPLEEDIATHSSILAWRIPIDRAA*
Ga0119870_10398412	3300014833	Activated Sludge	LVKNLPAIQETLVRFLGQEDPLEKGKATHSSILAWRIP*
Ga0126362_100098142	3300016461	Continental Margin Sediment	MAQIVKNLPAIQETRIRTLGGEDPPEKGMATLSSILAWRIP
Ga0126362_100152833	3300016461	Continental Margin Sediment	MAQLVKNLPAMQETHVRFLGCEDPLEKEMATHSSILAWRIPWT
Ga0126362_100274771	3300016461	Continental Margin Sediment	LVKNLLAMWETWVQPLHWEDPLEKGTSSHSSILAWRIPWTV
Ga0126362_100284411	3300016461	Continental Margin Sediment	LALKGSLVAQLVKNPPAMQETWVRSLGWEGLLEKGKAPHSSI
Ga0126362_100323303	3300016461	Continental Margin Sediment	VAQTVKNLPAMQETRVQSLGWEDLLENGMATHSSILAWTDEPG
Ga0126362_100491652	3300016461	Continental Margin Sediment	SFVAQLVKNPPAMQETWVQSLGWKDPLEKGTATHSSILAWRIPWTV
Ga0126362_100493341	3300016461	Continental Margin Sediment	AQLVKNPPAMQETWVRSLGWEDPLEKGKAIHFNILGWIIPWTV
Ga0126362_100540904	3300016461	Continental Margin Sediment	AQLVKNLPAMWETWVQSLGWENALEKGKATHSNILA
Ga0126362_100541862	3300016461	Continental Margin Sediment	SLMAQIVKNLPAMKDTRVQSLGWEDSLEKGMATHSIILA
Ga0126362_100549181	3300016461	Continental Margin Sediment	VAQLVKNLPAVRETWVLLLGWEDALEKIKATHSSILAWRIPWTV
Ga0126362_100568281	3300016461	Continental Margin Sediment	MVKNLPAVQETWVRSLGQKDPLEEVMATHCSIFAW
Ga0126362_100615162	3300016461	Continental Margin Sediment	VAQLVKNPPAMRETWVRSLGWEKPLEKGKATHSSVLAWRNPWTVQSMR
Ga0126362_100643592	3300016461	Continental Margin Sediment	VAQLVKNLPAMWETWVRSLGWEDPLEKGTATHSSILAWRIP
Ga0126362_100657961	3300016461	Continental Margin Sediment	MVKWLPAMRETRVRFLGQEDPLEKEMAIHSSTLAWKIPW
Ga0126362_100666901	3300016461	Continental Margin Sediment	QVALVVKNPPAMQEMWVRSLGREDPLEEEMATHSSILAWRIP
Ga0126362_100684852	3300016461	Continental Margin Sediment	ASLVAQLVKNPPAMRETWVRSLDWDDPLEKGKATHSSILAWRIH
Ga0126362_100817961	3300016461	Continental Margin Sediment	VAQSVKSLPTIWEIWVRSVGWEDPLEKEMATHSSILAWRNPWTEEP
Ga0126362_100818341	3300016461	Continental Margin Sediment	VAQLVKNPPAMRETWVRSLGWEDPLEKGKATHSSILAW
Ga0126362_100845861	3300016461	Continental Margin Sediment	GKNPPAMQEAWVGSLSREDLLETRMATHSSILAWRIP
Ga0126362_100850361	3300016461	Continental Margin Sediment	MAQMVKNLPAMQETWVQSLGWEDPLGKGMTIHSSI
Ga0126362_100874321	3300016461	Continental Margin Sediment	MVENLPGIQETQAASLDEDPLEKGMATHSSILAWRIP
Ga0126362_100987861	3300016461	Continental Margin Sediment	MVKNLPAVQETQVQSLGKEDHLEKAMATYSRILSWKIPWTE
Ga0126362_101021001	3300016461	Continental Margin Sediment	VAQLVKNLPAMQGIWVPSLGWEDPLEKGKATHSSILA
Ga0126362_101109022	3300016461	Continental Margin Sediment	VVKIPPAMQEAWVRSLGWEDPLEKEMATHSSILAW
Ga0126362_101191501	3300016461	Continental Margin Sediment	RAQLVKNLPAMKETPVQFLGRDDTLEKGKATHSSILAWGTPWTV
Ga0126362_101221541	3300016461	Continental Margin Sediment	KNLLAVLETQVQSLGWEDPLEKGIATHSSILAWRIPWTEETSWL
Ga0126362_101233022	3300016461	Continental Margin Sediment	AQLVKNPPAMSETWVRSLGWEGPLEKGKATLSSILAWRIPWTV
Ga0126362_101233641	3300016461	Continental Margin Sediment	VAKLVKNPPAMRETWVRSLDWEDPLEKGKATHSSIL
Ga0126362_101284492	3300016461	Continental Margin Sediment	MVKNLPETWETWVQSLGQEDPLEKGMATHSSVLAWEIPWTKEPGSV
Ga0126362_101336612	3300016461	Continental Margin Sediment	YSWASLVAQLVKNSPALQETWVQSLGWKDPLEKGKATHSGILAWRIP
Ga0126362_101385481	3300016461	Continental Margin Sediment	TVKNLPAMQESWVQSLGREDPLEKGMATHSSILTWRIP
Ga0126362_101459241	3300016461	Continental Margin Sediment	VAQLVKNPAVQEIWVHSLGWEDPLEKGKATHSSILAWRIPWTIPWG
Ga0126362_101480431	3300016461	Continental Margin Sediment	MTQMMKNPPAMQETLAPSLGWEDPLEKGMSTCSSVLAWRI
Ga0126362_101510251	3300016461	Continental Margin Sediment	VAQTVKNLLAMQEAWVRSLGQKDPPEKEMATHFSILAWSS
Ga0126362_101719541	3300016461	Continental Margin Sediment	VAQTVKNLPAMQETWVQSLGQEDPLEKGTATHSSILA
Ga0126362_101735481	3300016461	Continental Margin Sediment	RRKEIVAQQVKNLPAMWETWVRSLGWEHPLVKGKATHSSILA
Ga0126362_101783321	3300016461	Continental Margin Sediment	KNLPAMGEIWVRSLGWEDPLEKRMATHSSILAWKVPWTV
Ga0126362_101786661	3300016461	Continental Margin Sediment	VAQLVKNPPAMRETWVRSLGWEDPLEKRKATRSSILAWRIPWAV
Ga0126362_101819211	3300016461	Continental Margin Sediment	AQLVKNLPAMWETWVRSLDWEEPLEEGKATHSSSLAWRIP
Ga0126362_101820451	3300016461	Continental Margin Sediment	MVNNLPAVRETWVQSLCWEDPLEKGIATHSSILAWRIPWTEE
Ga0126362_101872641	3300016461	Continental Margin Sediment	MGASIVAQTVKNQPAMWETWVRPLGWEDPLEKEMATHSS
Ga0126362_101898652	3300016461	Continental Margin Sediment	MAQLLKNPPAMWETWVQSLGWEDPLEKGKATHSSILAWRIPWTV
Ga0126362_101909292	3300016461	Continental Margin Sediment	MAQSVKNLPAMQVNWVQSLGQEDPLEKGMTTHSSILAWRIP
Ga0126362_101977951	3300016461	Continental Margin Sediment	LVKNLPAMRETWVRSLGWEDPLEKGKATHSSILAWRIPWTV
Ga0126362_101983811	3300016461	Continental Margin Sediment	VIKNPPAMQETWALSLGQEDPLEKEMATHCSILAREIP
Ga0126362_102076081	3300016461	Continental Margin Sediment	MQGTRLPAAQENWVQSLGQEDPLEKEMATHSSILAWKIPC
Ga0126362_102205541	3300016461	Continental Margin Sediment	MAQLVKNPPAVWETWVRSLGWDDPLEKGAATHCSILA
Ga0126362_102224591	3300016461	Continental Margin Sediment	MLFFKWASLVAKLVKNLAAMWQTWVQSLGWEDPLEKAATTHSSILTWRIP
Ga0126362_102345052	3300016461	Continental Margin Sediment	MVKNLPAIQETWIPSLGREDPLEEEMATHSSILAWKKSPS
Ga0126362_102350541	3300016461	Continental Margin Sediment	MVKILPAMQKTWVQPLGQEDPLEKRMAAHSSILAW
Ga0126362_102359971	3300016461	Continental Margin Sediment	MAQLVKNLPAMWETWEPSLGWEDPLEKETATHSSILAWKIP
Ga0126362_102434882	3300016461	Continental Margin Sediment	MYPSLMAQLVKNPPAMQETWVPSLGWEETLEKGKATHSSILA
Ga0126362_102453911	3300016461	Continental Margin Sediment	MVAQLVKNLPAVRETWVRSLGWDEPLEEGMVTHSSILA
Ga0126362_102479731	3300016461	Continental Margin Sediment	MEKNLPVTQEVQETKLRSLGWEDPLEKGMASHSSILAWR
Ga0126362_102585912	3300016461	Continental Margin Sediment	VAQLVKNLPAMQETWVQSLGWEDPLEKGKTTHSSILAWRIP
Ga0126362_102663591	3300016461	Continental Margin Sediment	MAQLVENPPAVWETWVQSLGWEDPLEKGKATHSSI
Ga0126362_102670133	3300016461	Continental Margin Sediment	VAQIVKNLPAVQETQVQSLGQEDSLEKGVATHFSTLAWRIL
Ga0126362_102716282	3300016461	Continental Margin Sediment	VGYMVKKLAAMWETEVKYLDQEDPLEEGMATHSSILAWRIP
Ga0126362_102842011	3300016461	Continental Margin Sediment	MTRGFPGGSAVKNLPALQKLQEMQVQILGQEDALEEGIATHSSILVWRNP
Ga0126362_102844931	3300016461	Continental Margin Sediment	VVKNLPAMQEIQVQSLGWEDPLEKGMATHSSILAWLPSLS
Ga0126362_102878601	3300016461	Continental Margin Sediment	LVKNPPATQEIRVLSPGQEDPLEKEMATHSSVLAR
Ga0126362_102891762	3300016461	Continental Margin Sediment	GEVAELVKNPPAMRETWVRSLGWEDPLEKGKATHSSILAWRIPWTI
Ga0126362_102954821	3300016461	Continental Margin Sediment	LVTQLVKNLPAMWETWVRSLGWEDPLEKGKATHSGILAWTIPWTL
Ga0126362_102979492	3300016461	Continental Margin Sediment	LPAIQETRVQFLGQEDPLEKEMAIPSSILAWRTPWTEILF
Ga0126362_102983401	3300016461	Continental Margin Sediment	MSFPGGSDHKNLAAMQETRVQSLGREDPLEKGMATHSSILAWRIP
Ga0126362_103019921	3300016461	Continental Margin Sediment	VAQLVKNMPVMWETWVQSLGWEDPLEKGKATHSSILAWRIPWTV
Ga0126362_103035092	3300016461	Continental Margin Sediment	VVKNQPAMQETQVQSLGWEDPLEKGMTTHFFILAWRIPMT
Ga0126362_103117332	3300016461	Continental Margin Sediment	MVKNLPAMQETWVQSLGQEDALEKGMATHSSILAWR
Ga0126362_103128581	3300016461	Continental Margin Sediment	AQLVKNLPAMWETWVPSLGWEDALEKGKATHLSILAWRIPWTV
Ga0126362_103253761	3300016461	Continental Margin Sediment	VVIFLPAMQETWVQSLGQEDPLEESIATHSSILAWKIPMDQVAWQAI
Ga0126362_103338811	3300016461	Continental Margin Sediment	MVKNTPAVQETWVRSLGQKDPLEKGMAIHSSILAWRIPWTEEP
Ga0126362_103406693	3300016461	Continental Margin Sediment	MGVSLVAQLVKNPPAMRETWVRSLGWEDLLEKGTATHSHTLAWRIP
Ga0126362_103443131	3300016461	Continental Margin Sediment	MVKNLPAMQETWVQSLGQEDPLENKMATHSNILAWELPW
Ga0126362_103447341	3300016461	Continental Margin Sediment	LAQLVKNQPAKQETWVRSLGWEDSLEKGKATHSSILA
Ga0126362_103486561	3300016461	Continental Margin Sediment	MVKNLPAVRETWVRSLGWEDPLEEGMTAHSSILAWRIPMD
Ga0126362_103551761	3300016461	Continental Margin Sediment	VVKNLPAMQETQTLRVQSLGQEDPLEKEMVTHSSILAWEIP
Ga0126362_103551841	3300016461	Continental Margin Sediment	GSVVKNLPAVQETWVRSLGWEDPLEKGMATHSSILA
Ga0126362_103564902	3300016461	Continental Margin Sediment	MAQTVKNLPAMQGACVQSLGGEDPLEKGMAAHPSILAWR
Ga0126362_103694042	3300016461	Continental Margin Sediment	GRSLVVQLVKNLPAMWGTWIQALGWEDPLEKGKTTHSRILA
Ga0126362_103698301	3300016461	Continental Margin Sediment	NLPAMWETWVRSLGWEDPLEKGTATHTSILAWRIPWTV
Ga0126362_103701581	3300016461	Continental Margin Sediment	MVKNLPAMQETHFQSLGQEDPLEKGMATHSSILAWRIPWAEK
Ga0126362_103730421	3300016461	Continental Margin Sediment	GRELIKNLPAVREPWVRSLGWEDPLEKGKATPSSVLA
Ga0126362_103766131	3300016461	Continental Margin Sediment	ITQLVKNTPAMRETWVQSLGWEDPLDKGKATHSSILAWRIP
Ga0126362_103809481	3300016461	Continental Margin Sediment	AQLVKNPPAMQETWVQSLGWEDPLEKGTATHSNILAWRIP
Ga0126362_103824131	3300016461	Continental Margin Sediment	LVAQLVKNPPAMWETWVQSLGWEDPLEKGKTTHSSILAWRIPWTV
Ga0126362_103825712	3300016461	Continental Margin Sediment	VAKNPSARLETQETWVTSLGQGDPLEERMATHSSILARRIPRTEESDRL
Ga0126362_103838301	3300016461	Continental Margin Sediment	VASLVAQLVKNPPAIQETWVPSLGWEDPLEKGKATHSSLLAWRIPWTI
Ga0126362_103950922	3300016461	Continental Margin Sediment	MVKNLPAVEEIRVQSLGQEDPVEEAMATHSSILAWRIPWTEEPVRK
Ga0126362_103967701	3300016461	Continental Margin Sediment	MVKNLPAIQETCVRSLGREDPLEKGMVHSSILAWRI
Ga0126362_103982781	3300016461	Continental Margin Sediment	VAQMVKNLAAMQGTWVRSLARENTLEKGMATHSSILAWRI
Ga0126362_104006351	3300016461	Continental Margin Sediment	VIKNPHAMQETWVRSLGQEDPLEKEMATHSSVLAWEIPWI
Ga0126362_104043632	3300016461	Continental Margin Sediment	MVKNLPAIQEAQVQSLGQEDPLEKEMVTCSSILTWKIPWKEEPGK
Ga0126362_104115821	3300016461	Continental Margin Sediment	SLVAQLVKNPPAMRETWVRSLGWEDPLEKGKATHSSILAWRIPWTV
Ga0126362_104189791	3300016461	Continental Margin Sediment	VAQQVKNLPAVQETLVQFLGLEDPLEKGKATHSSILAWRI
Ga0126362_104191311	3300016461	Continental Margin Sediment	VAQMVKNLPVIQETRVQSLGREDPLEKEMATHSSIPAWRIPWTEEP
Ga0126362_104232891	3300016461	Continental Margin Sediment	VMGKNPPAMWETCVRYLGWEDPLGKGKATHSSILAWRIAW
Ga0126362_104299061	3300016461	Continental Margin Sediment	NPPAIRETWVLSLGWEDLLEEGMVTHSSILAWRILEDRGA
Ga0126362_104329191	3300016461	Continental Margin Sediment	VAQTVKNLPAMQENWVRSLGQKDPLEKGMANHSSILA
Ga0126362_104352901	3300016461	Continental Margin Sediment	GVLGGSDDKNLPAMQENRVQSLGWEDPLEKGMVTHSSILA
Ga0126362_104399821	3300016461	Continental Margin Sediment	PAMQETWVQSLGWEDPLEKGKTTHSSILARRIPWPV
Ga0126362_104413132	3300016461	Continental Margin Sediment	MAQLVKNLPAIWETWVPSLGWEEPLEKGRATDASIL
Ga0126362_104464071	3300016461	Continental Margin Sediment	VAQLVKNPPTMWGTWVQYLGREDPLEKGKDMHSSILAWRI
Ga0126362_104490821	3300016461	Continental Margin Sediment	MVKNLPAMQETWVQSLGQEDPLEKGMAIHSRILTWRIP
Ga0126362_104512611	3300016461	Continental Margin Sediment	VKNLPAMQKMWVPSLGQEDPLEEGIATHSSILAWRIPMDREAWWVTAH
Ga0126362_104545402	3300016461	Continental Margin Sediment	VAQLVKNPLAMWGTWVQSLGWEDSLEKGKATHSSILAWRILW
Ga0126362_104576881	3300016461	Continental Margin Sediment	VAQLVKNPPAMRETGVRSQGSEDPLEKGKATHSSILAWRIPG
Ga0126362_104623171	3300016461	Continental Margin Sediment	GGEENLPAVQETLVQFLGWEDPLEKGKATHSSILVWRIP
Ga0126362_104641841	3300016461	Continental Margin Sediment	VAQLVQNLPAMWETWVRSLGWEDPLEKGTATHSSILTS
Ga0126362_104745331	3300016461	Continental Margin Sediment	VVKNLPVIQQRCIQSLGQEDPLEKDMATHSSILAWKIPK
Ga0126362_104761191	3300016461	Continental Margin Sediment	GMIKHPPAMRETWVRSLCWEDPLEKGKATHSSILA
Ga0187909_113660382	3300018493	Goat Feces	QLVKKLPAMWETWGPSLGWEEPLEQGTATYSRILPWRIPWTV
Ga0187909_116169601	3300018493	Goat Feces	QLAKNLPAMWETWVQYLGWVDPLEKGKATHSSMGSQRVGH
Ga0214277_113095001	3300020818	Food Waste	SLVAQMVKNPPAMWENWVRSLGWKDPIEKEMATHSSVLA
Ga0224482_112097911	3300021426	Cattle And Sheep Rumen	VLKNQPAMPETQEVQVGSLGQEDPLEEDIATHSSILAWRIPIDRAA
Ga0226661_107904061	3300021982	Food Waste	LRASLVAQLVKNPPAMKETWVRSLGWEDPPEKGKATQSSILAKKI
Ga0255813_113788771	3300023280	Food Waste	VALEVKNPPAMQETWVPSPGQEDALAEGMATHSSILAW
Ga0256703_109187891	3300023291	Food Waste	VSQLVKNPPATWDPPLGWEDPLEKGKATHSSILAWRVPW
Ga0256703_109226511	3300023291	Food Waste	ARLVKNQPAMWETGARSLGWEDPLENGKATHSSILTWRIPWTV
Ga0311022_134779631	3300029799	Anaerobic Digester Digestate	LVKNLPAVQETQVQSLGQKDPLEKGMATHSDILAWRIP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F071823

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences