Metagenome Family F071995

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F071995
Family Type	Metagenome
Number of Sequences	121
Average Sequence Length	74 residues
Representative Sequence	MPRTSTTTPAGLSLDLYSLQGLSMNPNIDSFSFIPDPTSLYNMRVGELLKEDLGHMRQFQGKVMSGGDGMGS
Number of Associated Samples	18
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	72.50 %
% of genes near scaffold ends (potentially truncated)	20.66 %
% of genes from short scaffolds (< 2000 bps)	57.85 %
Associated GOLD sequencing projects	10
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.22

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (95.041 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater (84.297 % of family members)
Environment Ontology (ENVO)	Unclassified (84.298 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (84.298 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 27.00% β-sheet: 0.00% Coil/Unstructured: 73.00%
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Predicted 3D Structure

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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.22
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.22
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF01139	RtcB	1.65
PF02493	MORN	1.65
PF02338	OTU	0.83
PF04193	PQ-loop	0.83
PF00910	RNA_helicase	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	Translation, ribosomal structure and biogenesis [J]	1.65
COG2849	Antitoxin component YwqK of the YwqJK toxin-antitoxin module	Defense mechanisms [V]	1.65
COG4642	Uncharacterized conserved protein	Function unknown [S]	1.65

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.04 %
All Organisms	root	All Organisms	4.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.04 %
cellular organisms	root	All Organisms → cellular organisms	4.13 %
Viruses	superkingdom	All Organisms → Viruses	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.04 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	4.13 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.04 %
Cryptophyceae	class	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	1.65 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.04 %
Pyrenomonadales	order	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales	0.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.04 %
Geminigeraceae	family	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae	0.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300007516\|Ga0105050_10495374	Not Available	722	Open in IMG/M
3300007519\|Ga0105055_10018454	Not Available	8019	Open in IMG/M
3300007519\|Ga0105055_10019122	Not Available	7850	Open in IMG/M
3300007519\|Ga0105055_10021622	Not Available	7282	Open in IMG/M
3300007519\|Ga0105055_10022108	Not Available	7191	Open in IMG/M
3300007519\|Ga0105055_10023142	Not Available	7000	Open in IMG/M
3300007519\|Ga0105055_10055435	Not Available	4249	Open in IMG/M
3300007519\|Ga0105055_10059732	All Organisms → cellular organisms → Eukaryota	4074	Open in IMG/M
3300007519\|Ga0105055_10061215	All Organisms → cellular organisms → Eukaryota	4017	Open in IMG/M
3300007519\|Ga0105055_10064678	Not Available	3893	Open in IMG/M
3300007519\|Ga0105055_10075141	Not Available	3571	Open in IMG/M
3300007519\|Ga0105055_10084094	Not Available	3346	Open in IMG/M
3300007519\|Ga0105055_10088466	Not Available	3249	Open in IMG/M
3300007519\|Ga0105055_10095474	Not Available	3107	Open in IMG/M
3300007519\|Ga0105055_10113518	Not Available	2805	Open in IMG/M
3300007519\|Ga0105055_10123325	Not Available	2670	Open in IMG/M
3300007519\|Ga0105055_10135366	Not Available	2522	Open in IMG/M
3300007519\|Ga0105055_10146680	Not Available	2398	Open in IMG/M
3300007519\|Ga0105055_10156138	Not Available	2305	Open in IMG/M
3300007519\|Ga0105055_10178436	Not Available	2118	Open in IMG/M
3300007519\|Ga0105055_10223741	Not Available	1824	Open in IMG/M
3300007519\|Ga0105055_10231175	Not Available	1783	Open in IMG/M
3300007519\|Ga0105055_10253657	Not Available	1672	Open in IMG/M
3300007519\|Ga0105055_10457079	Not Available	1089	Open in IMG/M
3300007519\|Ga0105055_10484552	Not Available	1042	Open in IMG/M
3300007519\|Ga0105055_10940963	Not Available	633	Open in IMG/M
3300007519\|Ga0105055_10990897	Not Available	610	Open in IMG/M
3300007519\|Ga0105055_11074633	Not Available	575	Open in IMG/M
3300007519\|Ga0105055_11274585	Not Available	509	Open in IMG/M
3300007520\|Ga0105054_10016688	All Organisms → cellular organisms → Eukaryota	8587	Open in IMG/M
3300007520\|Ga0105054_10185706	Not Available	2023	Open in IMG/M
3300007520\|Ga0105054_10204557	Not Available	1896	Open in IMG/M
3300007520\|Ga0105054_10213241	Not Available	1845	Open in IMG/M
3300007520\|Ga0105054_10240876	All Organisms → Viruses → Predicted Viral	1698	Open in IMG/M
3300007520\|Ga0105054_10417393	Not Available	1135	Open in IMG/M
3300007520\|Ga0105054_10469677	Not Available	1037	Open in IMG/M
3300007520\|Ga0105054_11080814	Not Available	550	Open in IMG/M
3300007522\|Ga0105053_10037992	Not Available	5149	Open in IMG/M
3300007522\|Ga0105053_10544128	Not Available	929	Open in IMG/M
3300007522\|Ga0105053_10981158	Not Available	593	Open in IMG/M
3300007522\|Ga0105053_10985138	Not Available	591	Open in IMG/M
3300007523\|Ga0105052_10016699	Not Available	5955	Open in IMG/M
3300007523\|Ga0105052_10062485	Not Available	2603	Open in IMG/M
3300007523\|Ga0105052_10115137	Not Available	1844	Open in IMG/M
3300007523\|Ga0105052_10436275	Not Available	854	Open in IMG/M
3300007523\|Ga0105052_10530107	Not Available	760	Open in IMG/M
3300007523\|Ga0105052_10583730	Not Available	717	Open in IMG/M
3300007523\|Ga0105052_10771451	Not Available	606	Open in IMG/M
3300007523\|Ga0105052_10855686	Not Available	570	Open in IMG/M
3300007523\|Ga0105052_10989142	Not Available	523	Open in IMG/M
3300007722\|Ga0105051_10036377	Not Available	4036	Open in IMG/M
3300007722\|Ga0105051_10042925	Not Available	3671	Open in IMG/M
3300007722\|Ga0105051_10064936	Not Available	2895	Open in IMG/M
3300007722\|Ga0105051_10077458	Not Available	2624	Open in IMG/M
3300007722\|Ga0105051_10151468	Not Available	1796	Open in IMG/M
3300007722\|Ga0105051_10440943	Not Available	969	Open in IMG/M
3300007722\|Ga0105051_10660887	Not Available	765	Open in IMG/M
3300007722\|Ga0105051_10800200	Not Available	683	Open in IMG/M
3300007722\|Ga0105051_10881121	Not Available	645	Open in IMG/M
3300007722\|Ga0105051_11076599	Not Available	574	Open in IMG/M
3300011188\|Ga0136587_1033071	Not Available	1255	Open in IMG/M
3300011188\|Ga0136587_1054465	Not Available	979	Open in IMG/M
3300011188\|Ga0136587_1055882	Not Available	967	Open in IMG/M
3300011188\|Ga0136587_1068975	Not Available	871	Open in IMG/M
3300012037\|Ga0136559_1006726	Not Available	3164	Open in IMG/M
3300012037\|Ga0136559_1127648	Not Available	690	Open in IMG/M
3300012037\|Ga0136559_1165166	Not Available	610	Open in IMG/M
3300012037\|Ga0136559_1226370	Not Available	525	Open in IMG/M
3300012269\|Ga0136560_1076480	Not Available	621	Open in IMG/M
3300012272\|Ga0136586_1027015	Not Available	1292	Open in IMG/M
3300012272\|Ga0136586_1057816	Not Available	888	Open in IMG/M
3300012272\|Ga0136586_1151866	Not Available	569	Open in IMG/M
3300012272\|Ga0136586_1183991	Not Available	522	Open in IMG/M
3300027832\|Ga0209491_10017079	Not Available	7940	Open in IMG/M
3300027832\|Ga0209491_10027770	Not Available	5905	Open in IMG/M
3300027832\|Ga0209491_10035587	Not Available	5108	Open in IMG/M
3300027832\|Ga0209491_10035837	Not Available	5086	Open in IMG/M
3300027832\|Ga0209491_10046325	Not Available	4383	Open in IMG/M
3300027832\|Ga0209491_10067095	Not Available	3520	Open in IMG/M
3300027832\|Ga0209491_10072436	Not Available	3362	Open in IMG/M
3300027832\|Ga0209491_10073621	Not Available	3328	Open in IMG/M
3300027832\|Ga0209491_10100084	Not Available	2750	Open in IMG/M
3300027832\|Ga0209491_10128479	Not Available	2337	Open in IMG/M
3300027832\|Ga0209491_10133099	Not Available	2282	Open in IMG/M
3300027832\|Ga0209491_10168666	Not Available	1938	Open in IMG/M
3300027832\|Ga0209491_10169446	Not Available	1932	Open in IMG/M
3300027832\|Ga0209491_10191172	Not Available	1772	Open in IMG/M
3300027832\|Ga0209491_10224563	Not Available	1569	Open in IMG/M
3300027832\|Ga0209491_10438335	Not Available	900	Open in IMG/M
3300027848\|Ga0209390_10038787	Not Available	4810	Open in IMG/M
3300027848\|Ga0209390_10056299	Not Available	3879	Open in IMG/M
3300027848\|Ga0209390_10058093	Not Available	3810	Open in IMG/M
3300027848\|Ga0209390_10068444	Not Available	3461	Open in IMG/M
3300027848\|Ga0209390_10115737	Not Available	2505	Open in IMG/M
3300027848\|Ga0209390_10195264	Not Available	1754	Open in IMG/M
3300027848\|Ga0209390_10259766	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae	1414	Open in IMG/M
3300027848\|Ga0209390_10289285	Not Available	1299	Open in IMG/M
3300027848\|Ga0209390_10630212	Not Available	652	Open in IMG/M
3300027976\|Ga0209702_10217441	Not Available	806	Open in IMG/M
3300027976\|Ga0209702_10449762	Not Available	501	Open in IMG/M
3300027983\|Ga0209284_10027057	Not Available	3412	Open in IMG/M
3300027983\|Ga0209284_10097012	Not Available	1570	Open in IMG/M
3300027983\|Ga0209284_10161856	Not Available	1170	Open in IMG/M
3300028369\|Ga0306896_1027272	Not Available	866	Open in IMG/M
3300028413\|Ga0306870_1009475	Not Available	1835	Open in IMG/M
3300028413\|Ga0306870_1017683	Not Available	1296	Open in IMG/M
3300028413\|Ga0306870_1034261	Not Available	911	Open in IMG/M
3300028413\|Ga0306870_1055063	Not Available	714	Open in IMG/M
3300028413\|Ga0306870_1078393	Not Available	595	Open in IMG/M
3300032435\|Ga0335398_10029444	Not Available	5729	Open in IMG/M
3300032435\|Ga0335398_10074278	Not Available	3409	Open in IMG/M
3300032435\|Ga0335398_10232268	Not Available	1643	Open in IMG/M
3300032435\|Ga0335398_10541673	Not Available	828	Open in IMG/M
3300032435\|Ga0335398_10565784	Not Available	795	Open in IMG/M
3300032462\|Ga0335396_10030662	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	3775	Open in IMG/M
3300032462\|Ga0335396_10039359	Not Available	3239	Open in IMG/M
3300032462\|Ga0335396_10448374	Not Available	826	Open in IMG/M
3300032462\|Ga0335396_10617772	Not Available	673	Open in IMG/M
3300032462\|Ga0335396_10638509	Not Available	659	Open in IMG/M
3300032462\|Ga0335396_10713514	Not Available	613	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	84.30%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	15.70%

Habitat	Taxonomy	Distribution
Ice	Environmental → Aquatic → Freshwater → Ice	84.30%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	15.70%

Habitat	Taxonomy	Distribution
Glacial Lake	Environmental → Aquatic → Freshwater → Ice → Glacial Lake	84.30%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	15.70%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater	84.30%
Saline Lake	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake	15.70%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300007516	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01	Environmental	Open in IMG/M
3300007519	Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-03	Environmental	Open in IMG/M
3300007520	Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-02 (megahit assembly)	Environmental	Open in IMG/M
3300007522	Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-01	Environmental	Open in IMG/M
3300007523	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-03	Environmental	Open in IMG/M
3300007722	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-02 (megahit assembly)	Environmental	Open in IMG/M
3300011188	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 1 #563	Environmental	Open in IMG/M
3300012037	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Hop E1 #496	Environmental	Open in IMG/M
3300012269	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Hop E1 #497	Environmental	Open in IMG/M
3300012272	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 1 #562	Environmental	Open in IMG/M
3300027832	Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-02 (SPAdes)	Environmental	Open in IMG/M
3300027848	Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-01 (SPAdes)	Environmental	Open in IMG/M
3300027976	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01 (SPAdes)	Environmental	Open in IMG/M
3300027983	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-03 (SPAdes)	Environmental	Open in IMG/M
3300028369	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 1 #562 (v2)	Environmental	Open in IMG/M
3300028413	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Hop E1 #496 (v2)	Environmental	Open in IMG/M
3300032435	Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-03 (spades assembly)	Environmental	Open in IMG/M
3300032462	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-02 (spades assembly)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0105050_104953742	3300007516	Freshwater	MRIPRTSTTIPAGLSLDLYSLEGLSMNTNISSFSFILDPTTLYNTRVGELLLKEDLGHMRHFQGKVMSWRGRMGS*
Ga0105055_100184544	3300007519	Freshwater	MPRTSTTTPAGFSLDLYSLQELSMNTNIDSFSFIPDPTSLYNMRAGELLKKDLGHKRQFRGQVMGGDRMGSWQRYFLGMT*
Ga0105055_100191225	3300007519	Freshwater	MPRTSATAPAGLSLDLYFLQGMSTNTNIDSFSFIPDPTSLYNMRVGELLKEDLGHMRQFQGKVMSGGDRMDS*
Ga0105055_100216223	3300007519	Freshwater	MPKTSTTTPAKLSLDMYCLQGLSMNTNIDSFFSIPDPTSLHNIEIGGLLKEDLEHMRHFQEKVMGGGDRTGLAKELLWYDLTVT*
Ga0105055_100221082	3300007519	Freshwater	MPRTSTTTLVGLSFDLYSLQGLSMNTNINSLSFIPDPTSLYNMRVGELLKENLGHMRQFQGTVMSGEDGMAS*
Ga0105055_100231428	3300007519	Freshwater	MPRTSTTSPAGLSLDLYSLQGLSMNPNIHSFSFIPDPTSLHNMRVGEFLKEDLGHMRQFQGKVMSGGDRMSS*
Ga0105055_100554354	3300007519	Freshwater	VEYANAENSTTTPARLSLDLYSLQGLSMSTKIDSFSFIPDPTSLYNMRVGELLKEDLGHMRQFQGKVMSGGDGMGSLQRYYLGMT*
Ga0105055_100597321	3300007519	Freshwater	MPRTSTTTPAGLFLDLYSLQGLSMTTNINSFSSIPDHMNNMNVGELWKEGLGHMWQFQGKVMTHEWGGQNGVLTEEQKGKKRKKRDREEQSC*
Ga0105055_100612151	3300007519	Freshwater	MPKTSTTTPAGLPLDLYSIQGLSMNTNIDIFTFIPDPTSWYNMRVGELLKKDLGHMRQFQGKVMSGGDGMGS*
Ga0105055_100646781	3300007519	Freshwater	MPRTSNVTPARLSLDLYTLEGLSMSTNIDSSSFIPDRTSFYNMRVGELLKEDLGHMRQFQGKVISGGDRMGS*
Ga0105055_100751413	3300007519	Freshwater	MPRTSTTTLAGLFLDLYSLQGLSMNTDIDSFSFIPDPTSLCNMRVGELLKEDLGHMRQFQGKVISGGDGMGS*
Ga0105055_100840943	3300007519	Freshwater	MPGTSNTTPAGLYLDLYSLEGLSLNKNIDSSSFIPDLTSLYNMRVGEVLKEDLGHMKQFQGQVMSGGDRMVLSRGTP*
Ga0105055_100884661	3300007519	Freshwater	MPRTSTTTPAGLSLDLYCLQGLSMNTNIDRFSFIADPTVLCNMRLGELLKEDLGHMRQFQGKVMSGGDGMGS*
Ga0105055_100954742	3300007519	Freshwater	MPRTASTTPAGLSLDLYSRQGLSMNINIGSHNFFFIPDPTSLYIMRVGELLKEDLGHMWQSQGKVMSGGDTMGS*
Ga0105055_101135182	3300007519	Freshwater	MQMPRTSTTTPDGLSLDLYFLQGLSMNPNIDRFSFILDPASLCNMSVGELLKEDLGHMRHFQGKVMSGGDGMGS*
Ga0105055_101233253	3300007519	Freshwater	MPRTSTTTPAGLSLDLYSVEGLSMNTNIDSFSFIPDPTSLYKMRVGELLKEDLGHMRQFQGKVMSGGDRMSS*
Ga0105055_101353662	3300007519	Freshwater	MPRTSTTIPAGLSLDLYSLQGLSMNPHIDSFSFIPDPTSLYNMRVGELLREDLGHMRQFQGKVMSWGDGMGS*
Ga0105055_101466802	3300007519	Freshwater	MPRTSTTTPAGLLIDPHSLQGLSMNTNIDSFSRIPVATTLYNMRVGELFKEDLGHMRQFLVKVMSGGDGMGS*
Ga0105055_101561382	3300007519	Freshwater	MPRTSTTTPAGLSLDMYSLQGLSMNTNIDSFSFIPDPTSLYNMRVGELLKEDLGHVRQFQEKVMSGGDGMGS*
Ga0105055_101784364	3300007519	Freshwater	GLSFDLYSLRKLPMDTNMDSFSSIPDPTSLHNMKVGKLLKEDFGHMRQFQVKVIMGGGGRTGF*
Ga0105055_101973112	3300007519	Freshwater	MNTNIDSSSFIPRPTSLYTMRFGELLKKDLGQMSQFQGKVMSGGDRMGSYQRYHFGMTFYSRSATVAIHIG*
Ga0105055_102237411	3300007519	Freshwater	MPRTSTATPARPSLDLCCFQGLTKNPHIDSFSFIPDPASLYNKRVDELLKEDLGHMRQFQRKVMSGGDGVGS*
Ga0105055_102311751	3300007519	Freshwater	VEYANAENLNYHPAGLFLDLCSLPGLQMNPNIDSFSFIPYPTSLYNMRVGELLKEDLGHMRQFQGKVMSGVDGMGS*
Ga0105055_102536572	3300007519	Freshwater	MPRTSTTTPGGLSLDLYSLQGLSMNTNIDSFAFIPDPTSLYNMRVGELLKEDLGHMRQFQGKVGEDGIGS*
Ga0105055_104570791	3300007519	Freshwater	MPRTSTITPAGLSLDLYCLQGLSMNPNIYSFSFIQDPTSLYNMRVGELLKENLGHMRHFQGKVMSGGDGMDS*
Ga0105055_104845521	3300007519	Freshwater	MPRTSTTTPFGLSLDLYSLEGLTVNPHIDSFSFIPDPTSVYTMRVGELLKEDLGHMRQFQGKVM
Ga0105055_109409631	3300007519	Freshwater	MPRTSNITPAGLSLDLYTLKGLSMSTNNDSSSFIPDPTSLYNIRVGELLKEDLGHMRQFQGKVISGGDRMGS*
Ga0105055_109908971	3300007519	Freshwater	LSLDLYSHQGLSLSTNNDNSSFIPDPTSLYNMRVGELLKEDLGHMKQFQGKVMNGKGMAS
Ga0105055_110746331	3300007519	Freshwater	MRMPRTSTTAPDGLSLDLYSLQGLSMNTNIDSFSFIPDPTRLYNMRVGELLKEDLGHLRQFQGKVMSGGDGMSS*
Ga0105055_112745851	3300007519	Freshwater	MPRTSTTTPAGLSLDLYSLQGLSMNPNIDSFSFIPDPTSLYNMRVGELLKEDLGHMRQFQGKVMS
Ga0105054_100166888	3300007520	Freshwater	MPRTASTTPAGLSLDLYSRQGLSMNINIGSQNFFFIPDPTSLYIMRVGELLKEDLGHMWQSQGKVMSGGDTMGS*
Ga0105054_101857062	3300007520	Freshwater	MPRTSTTTPFGLSLDLYSLEGLTVNPHIDSFSFIPDPTSVYTMRVGELLKEDLGHMRQFQGKVMNGGGGMGP*
Ga0105054_102045573	3300007520	Freshwater	VEYANAENSTTTPARLSLDLYSLQGLSMSTKIDSFSFIPDPTSLYNMRVGELLKEDLGHMRQFQGKVMSGGD
Ga0105054_102132413	3300007520	Freshwater	MPRTSTTTPAGLSLDLYSLQGLSMNPNIDSFSFIPDPTSLYNMRVGELLKEDLGHMRQFQGKVMSGGD
Ga0105054_102408762	3300007520	Freshwater	MPRTSTTTPAGLSLDLYSLQGLSMNTNIDSFSFIPAPTSLYNMRVGELLKEVLGHMRQFQGKVMSGGGGMGS*
Ga0105054_104173931	3300007520	Freshwater	MPRTSTTTPARLFLDLYSLQRLSINTNINSFSFIPDPTSLYNISVGELLKEDLGHMRQFQGKVMGGGDRGE*
Ga0105054_104696771	3300007520	Freshwater	MPRTSTTTPAGLSLDLYSLQGLSMYPNIDSFSFIPDPISLYNMRVRELLKEDLGHMRQFQGKIMRGGDGMGS*
Ga0105054_110808141	3300007520	Freshwater	MPRTSTTTPDGLSLDLYFLQGLSMNPNIDRFSFILDPASLCNMSVGELLKEDLGHMRHFQGKVMSGGDGMGS*
Ga0105053_100379923	3300007522	Freshwater	MPRSTTTTPAGLSLDLYSFQGLSMNTNIESFSFIPDPTSLYNMRVRELLKKNLGQMRQFQGKVMIGGDRMGS*
Ga0105053_105441282	3300007522	Freshwater	MPRTSTTTPAGLSLDLYSLQGLSMNTNIDSFSFIPAPTSMYNMEVVELLKEDLGHMRQFQGKVMSGGDGMGS*
Ga0105053_109811581	3300007522	Freshwater	PHCKLAKWSMRMPRTSTTAPDGLSLDLYSLQGLSMNTNIDSFSFIPDPTRLYNMRVGELLKEDLGHLRQFQGKVMSGGDGMSS*
Ga0105053_109851381	3300007522	Freshwater	MPRTSTTTSAGLSFDLYSLRKLPMDTNMDSFSSIPDPTSLHNMKVGKLLKEDFGHMRQFQVKVVMGGGGRTGF*
Ga0105052_100166993	3300007523	Freshwater	MPGTSTTTPAGLSLDLYSVQGLSMDTNIDSFSFIPDSTSSYNMRVGELLEEDLGHMRQFQEKVMSGGDGMGS*
Ga0105052_100624853	3300007523	Freshwater	MPRTSTTTPARLSLDLYSHQGLSLSTNNDNSSFIPDPTSLCNMRVGELLKEDLGHMKQFQGKVMNGKGMAS*
Ga0105052_101151371	3300007523	Freshwater	MPRTSTTTPAGLSLDLYSLEGLSMNTNIDSFSFIPDPTSLYNMRVGELLLKEDLGHMRQFQGKVMS*
Ga0105052_104362751	3300007523	Freshwater	MPRTSTTTPAGLSLDLYSFQGLSMNPHIDSFSFIPDPTILYNMRVGELLKEDLGHMRQFQGKVVSGGDG
Ga0105052_105301072	3300007523	Freshwater	MPRTSTTTPAGLSLDLYSLQGLSMNTNIDSFSFIPAPTSLYNMRVGELLKEVLGHMRQFQVKVMSGGDRMGS*
Ga0105052_105837302	3300007523	Freshwater	MPRTSTTTPAGFSLDLFSLQTLSMNTNIDSFSFIPDPTSLYNMRVGELLKEDLGHMRQFQGKVMSGGDGMGS*
Ga0105052_107714511	3300007523	Freshwater	MPRTSTTALAGLSLDLYSLQGLSMNTNIDSFSFIPDPISLYNVRVGELLKEDLGHMRQFQGKVMSGGDGMGS*
Ga0105052_108556861	3300007523	Freshwater	MPRTSTITPAGLSLDLYCLQGLSMNPNIYSFSFIQDPTSLYNMRVGELLKENLGHMRHFQGKVMSGG
Ga0105052_109891421	3300007523	Freshwater	PAGLSLDLYSHQGLSMYTNIQVDSSSFIPDPTSLHNMRVVELLKENLGPVGHISQSQGKVMSGGDRMGS*
Ga0105051_100363771	3300007722	Freshwater	MLTTSATTPAGLSLDLYSLQGLDMNPHINSFSFITDPTSLYNMRVGELFKEDLGHMRQFQGKVMSGGEGMGS*
Ga0105051_100429254	3300007722	Freshwater	CECQEPQLPPQTGLSLDLYSLQGMSMNRNIDSFSFIPGPSSLYNIRVGGLLKEDLGHIRQFQGKVMSWGDGMGSWQRYYLGKPY*
Ga0105051_100649362	3300007722	Freshwater	MRTSRTSTTTPSGLSLDLYSLQGLSINTNIDSFSSIPDPTSLHNMKVGELLKEDLKHMRQFQGNVMSEGDRMGY*
Ga0105051_100774582	3300007722	Freshwater	MPRTSTTALAGLSLDLYSLQGLSMNTNIDSFSFIPDPISLYNVRVGELLKEDLGHMRQFQGKVMSGGDGM
Ga0105051_101514681	3300007722	Freshwater	MPRTSTTTPAGLFLDLYSLQGMSMTTNIDSFSSIPDPTSLHNMKVGELWKGGMGHMWQFQGKVMSGGDRTGF*
Ga0105051_104409432	3300007722	Freshwater	MPRTSTTTPAGLSLDLYSLEGLSMNTNIDSFSFIPDPTSLYNMRVGELLLKEDLGHMRQFQGKVMSWRGRMGS*
Ga0105051_106608871	3300007722	Freshwater	MPRTSTTTLAGLSLELYSLQGLSMNTDIDSFSFIPDPTSLCNMRVGELLKEDLGHMRQFQGKVMSGGDGMGS*
Ga0105051_108002001	3300007722	Freshwater	MRIPRTSTTTPAGLSLDLYSLEGLSMNTNIGSFSFILDPTSLCNMRVGELLLKEDLGHMRHFQGKVMSWRGRMGS*
Ga0105051_108811211	3300007722	Freshwater	MPRTSTTTPARPSLDLYSLQEMSMNTNTDSFSSIPDPTSLHNMKFGEFLKEDLGHMRQFGGKVMSRGGRTGF*
Ga0105051_110765991	3300007722	Freshwater	MPRTSTTTPFGLSLDLYSLEGLTVNPHIDSFSFIPDPTSVYTMRVGELLKEDLGHMRQFQGEVMNG
Ga0136587_10330711	3300011188	Saline Lake	MPRTSTTTPAGLFLDLYSLQGLSMTTNINSFSSIPDHMNNMNVGELWKEGLGHMWQFQGKVMTHEWGGQNGVLAEEQKGKKRKKRDREEQSC*
Ga0136587_10544652	3300011188	Saline Lake	MPRTLATIPAGLSLDLYSLQGPSMNTNIDSFSFIPDPTSLYNMRVVELLKEDLGHMRQFQGKVMSGG
Ga0136587_10558821	3300011188	Saline Lake	AKWSMRLPRTSTTTPAGLSLDLYSLQGLFMNTNIDSFSSIADPTSLHIKKVGELLKDHLGHMRQFQGKVMSGGGRTGF*
Ga0136587_10689751	3300011188	Saline Lake	LSLDLYSHQGLSMYTNIDSFSLIRDLTSLYNMRVGELLKEDMGHMRQFQGKVMSGRDGMGSYQRYYLGMT*
Ga0136559_10067262	3300012037	Saline Lake	MPRTSTTTPAGLSLDLYSLKGLSMNPHIDSFSFIPDPTSLYNMRVGELLREDLGHMRQFQGKVMSGGDGMGS*
Ga0136559_11276481	3300012037	Saline Lake	MPRTSTTTPAGLSLDLYSLQGLSMYPNIDSFSFISDPTSLYNMRVRELLKEDLGHMRQFQGKIMRGGDGMGS*
Ga0136559_11651661	3300012037	Saline Lake	MPRTSTTTPAGLSLDLYSLQGLSMNPNIDSFSFIPDPTSLYNMRVGELLKEDLGHMRQFQGKVMSGGDGMGS*
Ga0136559_12263701	3300012037	Saline Lake	MPRTSNVTPARLSLDLYTLEGLSMSTNIDSSSFIPDRTSFYNMRVGELLKEELGHMRQFQGKVISGGDRMGS*
Ga0136560_10764801	3300012269	Saline Lake	GLFLDLCSLPGLQMNPNIDSFSFIPYPTSLYNMRVGELLKEDLGHMRQFQGKVMSGVDGMGS*
Ga0136586_10270151	3300012272	Saline Lake	MPRTSTTTPAGLSLDLYCLQGLSMNTNIDRFSFIADPTVLCNMRLGELLKADLGHMRQFQGKVMSGGDGMGS*
Ga0136586_10578162	3300012272	Saline Lake	MPRTSATAPAGLSLDLYFLQGMSTNTNIDSFSFIPDPTSLYNMRIGELLKEDLGHMRQFQGKVMSGGDRMDS*
Ga0136586_11518661	3300012272	Saline Lake	MPRTSTTTPAGLFLDLYSLQGLSMTTNINSFSSIPDHMNNMNVGELWKEGLGHMWQFQGKVMTHEWGGQNGVLAEEQKGKKRKKRDREEQ
Ga0136586_11839911	3300012272	Saline Lake	GLSLDLYSLQGLSMYPNIDSFSFISDPTSLYNMRVRELLKEDLGHMRQFQGKIMRGGDGMGS*
Ga0209491_100170797	3300027832	Freshwater	MPRTSTTSPAGLSLDLYSLQGLSMNPNIHSFSFIPDPTSLHNMRVGEFLKEDLGHMRQFQGKVMSGGDRMSS
Ga0209491_100277705	3300027832	Freshwater	MPRTSTTTPAGPSLDLYSLQGLSMNTNIDSSSFIPDPTSLRVGKLLKEDLGHMGQFQGKVMSGGDEMGS
Ga0209491_100355879	3300027832	Freshwater	MPRTSTTTPAGLSLDLYSLQGLSMNTNIHSFSFIPDPTKLYNMRVGELLKEDLGHMRQLQGNVMIGGDGMGS
Ga0209491_100358378	3300027832	Freshwater	MPGTSNTTPAGLYLDLYSLEGLSLNKNIDSSSFIPDLTSLYNMRVGEVLKEDLGHMKQFQGQVMSGGDRMVLSRGTP
Ga0209491_100463253	3300027832	Freshwater	MPRTSTTTPAGLSLDLYCLQGLSMNTNIDRFSFIADPTVLCNMRLGELLKEDLGHMRQFQGKVMSGGDGMGS
Ga0209491_100670953	3300027832	Freshwater	MPRTSTTTPAGFSLDLYSLQELSMNTNIDSFSFIPDPTSLYNMRAGELLKKDLGHKRQFRGQVMGGDRMGSWQRYFLGMT
Ga0209491_100724362	3300027832	Freshwater	MNTLRRRPNCKLAKWSMRMPXTPTTTTAGLFLDLYFLEGLFMNTDIGSSPFMPDPTTLYNMRVGELLKEDLGHMRQFQGKVMSVGDXKGS
Ga0209491_100736212	3300027832	Freshwater	MPRTSTTTLAGLFLDLYSLQGLSMNTDIDSFSFIPDPTSLCNMRVGELLKEDLGHMRQFQGKVISGGDGMGS
Ga0209491_101000841	3300027832	Freshwater	MNVMHRRPHCKLVKWSMRMPRSTTTTPAGLSLDLYSFQGLSMNTNIESFSFIPDPTSLYNMRVRELLKKNLGQMRQFQGKVMIGGDRMGS
Ga0209491_101284791	3300027832	Freshwater	MPKTSTTTPAGLPLDLYSIQGLSMNTNIDIFTFIPDPTSWYNMRVGELLKKDLGHMRQFQGKVMSGGDGMGS
Ga0209491_101330992	3300027832	Freshwater	MSYVADHTASQLSMRMPRTSTTTPAGLSLDMYSLQGLSMNTNIDSFSFIPDPTSLYNMRVGELLKEDLGHVRQFQEKVMSGGDGMGS
Ga0209491_101686661	3300027832	Freshwater	MPRTSTTTPAGLFLDLYSLQGLSMTTNINSFSSIPDHMNNMNVGELWKEGLGHMWQFQGKVMTHEWGGQNGVLTEEQKGKKRKKRDREEQSC
Ga0209491_101694461	3300027832	Freshwater	MPRTASTTPAGLSLDLYSRQGLSMNINIGSQNFFFIPDPTSLYIMRVGELLKEDLGHMWQSQGKVMSGGDTMGS
Ga0209491_101911721	3300027832	Freshwater	MPRTSTTTPFGLSLDLYSLEGLTVNPHIDSFSFIPDPTSVYTMRVGELLKEDLGHMRQFQGKVMNGGGGMGP
Ga0209491_102245631	3300027832	Freshwater	MPRTSTTIPAGLSLDLYSLQGLSMNPHIDSFSFIPDPTSLYNMRVGELLREDLGHMRQFQGKVMSWGDGMGS
Ga0209491_104383351	3300027832	Freshwater	MPRTSTTTPDGLSLDLYFLQGLSMNPNIDRFSFILDPASLCNMSVGELLKEDLGHMRHFQGKVMSGGDGMGS
Ga0209390_100387872	3300027848	Freshwater	MPRTSTTTLVGLSFDLYSLQGLSMNTNINSLSFIPDPTSLYNMRVGELLKENLGHMRQFQGTVMSGEDGMAS
Ga0209390_100562994	3300027848	Freshwater	MPRTSNVTPARLSLDLYTLEGLSMSTNIDSSSFIPDRTSLYNIRVGELLKEDLGHMRQFQGKVISGGDRMGS
Ga0209390_100580935	3300027848	Freshwater	MPRTSTTTPAGLSLDLYSLQGLSMNPNIDSFSFIPDPTSLYNMRVGELLKEDLGHMRQFQGKVMSGGDGMGS
Ga0209390_100684443	3300027848	Freshwater	MPRTSTATPAGLSLDLYSHQGLSMYTNIDSFSLIRDLTSLYNMRVGELLKEDMGHMRQFQGKVMSGRDGMGSYQRYYLGMT
Ga0209390_101157371	3300027848	Freshwater	MPRTASTTPAGLSLDLYSRQGLSMNINIGSHNFFFIPDPTSLYIMRVGELLKEDLGHMWQSQGKVMSGGDKMGS
Ga0209390_101952641	3300027848	Freshwater	MPRTSTTTPGGLSLDLYSLQGLSMNTNIDSFAFIPDPTSLYNMRVGELLKEDLGHMRQFQGKVGEDGIGS
Ga0209390_102597662	3300027848	Freshwater	MPRTSTTTPAGLSLDLYSLQGLSMNPHIVSFSFIPDPTSLYNMRVGELLSEDLGHMRQFQGKVMSGGGRNGFLAEVLLGY
Ga0209390_102892851	3300027848	Freshwater	VEYANAENLNYHPAGLFLDLCSLPGLQMNPNIDSFSFIPYPTSLYNMRVGELLKEDLGHMRQFQGKVMSGVDGMGS
Ga0209390_106302121	3300027848	Freshwater	MPRTSNITPAGLSLDLYTLKGLSMSTNNDSSSFIPDPTSLYNIRVGELLKEDLGHMRQFQGKVISGGDRMGS
Ga0209702_102174411	3300027976	Freshwater	SMRMPRTSTTTPAGLSLDLYSFQGLSMNPHIDSFSFIPDPTILYNMRVGELLKEDLGHMRQFQGKVVSGGDGMVS
Ga0209702_104497622	3300027976	Freshwater	LDLYSHEGLSMDTNIDSFSLILDLTSLYNMRVGDLLKEDLGHMRQFQGKVMSGRDGMGSYQRYYLGMT
Ga0209284_100270573	3300027983	Freshwater	MRTSRTSTTTPSGLSLDLYSLQGLSINTNIDSFSSIPDPTSLHNMKVGELLKEDLKHMRQFQGNVMSEGDRMGY
Ga0209284_100970122	3300027983	Freshwater	MLTTSATTPAGLSLDLYSLQGLDMNPHINSFSFITDPTSLYNMRVGELFKEDLGHMRQFQGKVMSGGEGMGS
Ga0209284_101618561	3300027983	Freshwater	KWSTLMPRTSTTTPAGLFLDLYSLQGMSMTTNIDSFSSIPDPTSLHNMKVGELWKEGMGHMWQFQGKVMSGGDRTGF
Ga0306896_10272721	3300028369	Saline Lake	VEYANAENSTTTPARLSLDLYSLQGLSMSTKIDSFSFIPDPTSLYNMRVGELLKEDLGHMRQFQGKVMSGGDGMGSLQRYYLGMT
Ga0306870_10094752	3300028413	Saline Lake	MPRTSTTTPAGLSLDLYSLKGLSMNPHIDSFSFIPDPTSLYNMRVGELLREDLGHMRQFQGKVMSGGDGMGS
Ga0306870_10176831	3300028413	Saline Lake	MRMPKTSTTTPAGLPLDLYSIQGLSMNTNIDIFTFIPDPTSWYNMRVGELLKKDLGHMRQFQGKVMSGGDGMGS
Ga0306870_10342611	3300028413	Saline Lake	VEYANAENSTTTPARLSLDLYSLQGLSMSTKIDSFSFIPDPTSLYNMRVGELLKEDLGHMRQFQGKVMSGGDGMGS
Ga0306870_10550631	3300028413	Saline Lake	MPRTSNVTPARLSLDLYTLEGLSMSTNIDSSSFIPDRTSFYNMRVGELLKEELGHMRQFQGKVISGGDRMGS
Ga0306870_10783931	3300028413	Saline Lake	MPRTSTTTPAGLSLDLYSLQGLSMYPNIDSFSFISDPTSLYNMRVRELLKEDLGHMRQFQGKIMRGGDGMGS
Ga0335398_100294441	3300032435	Freshwater	MPKTSTTTPAKLSLDMYCLQGLSMNTNIDSFFSIPDPTSLHNIEIGGLLKEDLEHMRHFQEKVMGGGDRTGLAKELLWYDLTVT
Ga0335398_100742784	3300032435	Freshwater	MPRTSTTTPAGLSLDMYSLQGLSMNTNIDSFSFIPDPTSLYNMRVGELLKEDLGHVRQFQEKVMSGGDGMGS
Ga0335398_102322682	3300032435	Freshwater	MPRTSNVTPARLSLDLYTLEGLSMSTNIDSSSFIPDRTSFYNMRVGELLKEDLGHMRQFQGKVISGGDRMGS
Ga0335398_105416731	3300032435	Freshwater	MPRTSTATPARPSLDLCCFQGLTKNPHIDSFSFIPDPASLYNKRVDELLKEDLGHMRQFQRKVMSGGDGVGS
Ga0335398_105657841	3300032435	Freshwater	MPRTSTTTPAGLSLDLYSLQGLSMYPNIDSFSFIPDPISLYNMRVRELLKEDLGHMRQFQGKIMRGGDGIGS
Ga0335396_100306624	3300032462	Freshwater	MPRTSTTTPAGLSLDLYSFQGLSMNPHIDSFSFIPDPTILYNMRVGELLKEDLGHMRQFQGKVVSGGDGMVS
Ga0335396_100393593	3300032462	Freshwater	MLTTSATTPAGLSLDLYSLQGLYMNPHINSFSFITDPTSLYNMRVGELFKEDLGHMRQFQGKVMSGGEGMGS
Ga0335396_104483741	3300032462	Freshwater	MPGTSTTTPAGLSLDLYSVQGLSMDTNIDSFSFIPDSTSSYNMRVGELLEEDLGHMRQFQEKVMSGGDGMGS
Ga0335396_106177721	3300032462	Freshwater	MLAKWSLRMPRTSTTTPAGLSLDLYSLEGLSMNTNIDSFSFIPDPTSLYNMRVGELLLKEDLGHMRQFQGKVMSWRGRMGS
Ga0335396_106385091	3300032462	Freshwater	MPRTSTATPAGPSLDLCSFQGLTKNAHIDSFSFIPDPTSLYNKRVGELLKEDLRHMRQFQGMVM
Ga0335396_107135141	3300032462	Freshwater	MPRTSTTTLAGLSLELYSLQGLSMNTDIDSFSFIPDPTSLCNMRVGELLKEDLGHMRQFQGKVMSGGDGMGS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F071995

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences