NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F072115

Metagenome Family F072115

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F072115
Family Type Metagenome
Number of Sequences 121
Average Sequence Length 43 residues
Representative Sequence MTHTTPTLLEVLSYLTDPTFTSVVVLVVGTFAALTAINKIGGAR
Number of Associated Samples 61
Number of Associated Scaffolds 121

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 38.02 %
% of genes near scaffold ends (potentially truncated) 19.01 %
% of genes from short scaffolds (< 2000 bps) 76.86 %
Associated GOLD sequencing projects 55
AlphaFold2 3D model prediction Yes
3D model pTM-score0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (75.207 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater
(34.711 % of family members)
Environment Ontology (ENVO) Unclassified
(52.066 % of family members)
Earth Microbiome Project Ontology (EMPO) Unclassified
(41.322 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 44.44%    β-sheet: 0.00%    Coil/Unstructured: 55.56%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.54
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 121 Family Scaffolds
PF12728HTH_17 57.85
PF13392HNH_3 4.13
PF00145DNA_methylase 3.31
PF14090HTH_39 2.48
PF00589Phage_integrase 1.65
PF01807zf-CHC2 0.83
PF03796DnaB_C 0.83
PF13730HTH_36 0.83
PF01507PAPS_reduct 0.83
PF08308PEGA 0.83

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 121 Family Scaffolds
COG0270DNA-cytosine methylaseReplication, recombination and repair [L] 3.31
COG0305Replicative DNA helicaseReplication, recombination and repair [L] 0.83
COG0358DNA primase (bacterial type)Replication, recombination and repair [L] 0.83
COG1066DNA repair protein RadA/Sms, contains AAA+ ATPase domainReplication, recombination and repair [L] 0.83


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A75.21 %
All OrganismsrootAll Organisms24.79 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2020350000|Qingha_contig18513Not Available568Open in IMG/M
2022920000|QLn_FQAYR3Y02QV8O7Not Available516Open in IMG/M
2199352018|QLA_contig20795.20795Not Available715Open in IMG/M
3300002161|JGI24766J26685_10017135All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → unclassified Alcaligenaceae → Alcaligenaceae bacterium1863Open in IMG/M
3300002202|metazooDRAFT_1243625Not Available561Open in IMG/M
3300002203|metazooDRAFT_1296601Not Available625Open in IMG/M
3300002212|metazooDRAFT_1372189Not Available668Open in IMG/M
3300002408|B570J29032_109127405Not Available604Open in IMG/M
3300002408|B570J29032_109239291All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium649Open in IMG/M
3300002408|B570J29032_109262276Not Available660Open in IMG/M
3300002408|B570J29032_109355495Not Available709Open in IMG/M
3300002835|B570J40625_100637847Not Available967Open in IMG/M
3300005805|Ga0079957_1052773Not Available2477Open in IMG/M
3300005805|Ga0079957_1372065Not Available616Open in IMG/M
3300006802|Ga0070749_10291497Not Available917Open in IMG/M
3300006802|Ga0070749_10591228Not Available599Open in IMG/M
3300007212|Ga0103958_1094172Not Available1224Open in IMG/M
3300007538|Ga0099851_1061614Not Available1463Open in IMG/M
3300007538|Ga0099851_1086312Not Available1205Open in IMG/M
3300007539|Ga0099849_1225090Not Available697Open in IMG/M
3300007541|Ga0099848_1023941All Organisms → cellular organisms → Bacteria2585Open in IMG/M
3300007541|Ga0099848_1227194All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium660Open in IMG/M
3300007541|Ga0099848_1237633Not Available641Open in IMG/M
3300007541|Ga0099848_1248402Not Available623Open in IMG/M
3300007541|Ga0099848_1295590Not Available557Open in IMG/M
3300007541|Ga0099848_1298352Not Available553Open in IMG/M
3300007542|Ga0099846_1100943Not Available1062Open in IMG/M
3300007542|Ga0099846_1227612Not Available652Open in IMG/M
3300007542|Ga0099846_1266727Not Available592Open in IMG/M
3300007960|Ga0099850_1204247All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium776Open in IMG/M
3300007960|Ga0099850_1206927Not Available770Open in IMG/M
3300007960|Ga0099850_1298166Not Available612Open in IMG/M
3300008448|Ga0114876_1016046Not Available4033Open in IMG/M
3300010354|Ga0129333_10433031Not Available1160Open in IMG/M
3300010354|Ga0129333_10626396Not Available931Open in IMG/M
3300010354|Ga0129333_10633911Not Available925Open in IMG/M
3300010354|Ga0129333_11100616Not Available663Open in IMG/M
3300010354|Ga0129333_11277505Not Available607Open in IMG/M
3300010354|Ga0129333_11392649Not Available577Open in IMG/M
3300010354|Ga0129333_11647596Not Available523Open in IMG/M
3300010370|Ga0129336_10241795Not Available1016Open in IMG/M
3300010370|Ga0129336_10295098Not Available902Open in IMG/M
3300011984|Ga0119931_1037213Not Available583Open in IMG/M
3300012000|Ga0119951_1042559Not Available1361Open in IMG/M
(restricted) 3300013131|Ga0172373_10116679All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1973Open in IMG/M
3300017774|Ga0181358_1194937Not Available666Open in IMG/M
3300017774|Ga0181358_1258841Not Available544Open in IMG/M
3300019784|Ga0181359_1013932All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae2940Open in IMG/M
3300019784|Ga0181359_1048995Not Available1630Open in IMG/M
3300019784|Ga0181359_1058277Not Available1482Open in IMG/M
3300019784|Ga0181359_1077407Not Available1251Open in IMG/M
3300020048|Ga0207193_1115516Not Available2379Open in IMG/M
3300020506|Ga0208091_1018920All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium806Open in IMG/M
3300020543|Ga0208089_1005914Not Available2202Open in IMG/M
3300020553|Ga0208855_1002135Not Available4326Open in IMG/M
3300020554|Ga0208599_1005525Not Available2237Open in IMG/M
3300020556|Ga0208486_1018090Not Available1085Open in IMG/M
3300022176|Ga0212031_1071982All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium588Open in IMG/M
3300022190|Ga0181354_1015418All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2347Open in IMG/M
3300022190|Ga0181354_1126744Not Available816Open in IMG/M
3300022198|Ga0196905_1107310Not Available741Open in IMG/M
3300023174|Ga0214921_10021904All Organisms → cellular organisms → Bacteria6757Open in IMG/M
3300025647|Ga0208160_1110081Not Available705Open in IMG/M
3300025655|Ga0208795_1049561Not Available1246Open in IMG/M
3300025687|Ga0208019_1205941Not Available511Open in IMG/M
3300027793|Ga0209972_10098529Not Available1472Open in IMG/M
3300027805|Ga0209229_10004300All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage5939Open in IMG/M
3300027805|Ga0209229_10021297Not Available2800Open in IMG/M
3300027805|Ga0209229_10067161All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1606Open in IMG/M
3300027805|Ga0209229_10115872All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae1208Open in IMG/M
3300027805|Ga0209229_10133637Not Available1119Open in IMG/M
3300027805|Ga0209229_10274568Not Available747Open in IMG/M
3300027805|Ga0209229_10296110Not Available714Open in IMG/M
3300029930|Ga0119944_1018507Not Available966Open in IMG/M
3300029933|Ga0119945_1031201Not Available604Open in IMG/M
3300031787|Ga0315900_10018544Not Available8166Open in IMG/M
3300031787|Ga0315900_10204345Not Available1745Open in IMG/M
3300031787|Ga0315900_10298401All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → unclassified Alcaligenaceae → Alcaligenaceae bacterium1337Open in IMG/M
3300031857|Ga0315909_10418401All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae954Open in IMG/M
3300033816|Ga0334980_0000446All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage19294Open in IMG/M
3300033816|Ga0334980_0047520All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae1818Open in IMG/M
3300033816|Ga0334980_0093516Not Available1253Open in IMG/M
3300033981|Ga0334982_0145100All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1213Open in IMG/M
3300033981|Ga0334982_0153682All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae1170Open in IMG/M
3300033981|Ga0334982_0212503All Organisms → cellular organisms → Bacteria949Open in IMG/M
3300033993|Ga0334994_0336132Not Available753Open in IMG/M
3300033993|Ga0334994_0384450Not Available683Open in IMG/M
3300033995|Ga0335003_0000132Not Available39841Open in IMG/M
3300034012|Ga0334986_0275005Not Available904Open in IMG/M
3300034012|Ga0334986_0390027Not Available711Open in IMG/M
3300034019|Ga0334998_0253038Not Available1067Open in IMG/M
3300034061|Ga0334987_0135336Not Available1830Open in IMG/M
3300034062|Ga0334995_0003686All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage15672Open in IMG/M
3300034062|Ga0334995_0052434All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae3327Open in IMG/M
3300034062|Ga0334995_0068892Not Available2795Open in IMG/M
3300034062|Ga0334995_0330410Not Available985Open in IMG/M
3300034073|Ga0310130_0018543Not Available2248Open in IMG/M
3300034073|Ga0310130_0214535Not Available601Open in IMG/M
3300034082|Ga0335020_0001322Not Available17456Open in IMG/M
3300034082|Ga0335020_0008147Not Available6454Open in IMG/M
3300034092|Ga0335010_0141125Not Available1540Open in IMG/M
3300034092|Ga0335010_0201539Not Available1213Open in IMG/M
3300034092|Ga0335010_0544424Not Available600Open in IMG/M
3300034096|Ga0335025_0015912All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage5318Open in IMG/M
3300034096|Ga0335025_0040230All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage3116Open in IMG/M
3300034101|Ga0335027_0016249All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage6395Open in IMG/M
3300034101|Ga0335027_0026530Not Available4864Open in IMG/M
3300034101|Ga0335027_0066274All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2857Open in IMG/M
3300034101|Ga0335027_0091752Not Available2338Open in IMG/M
3300034101|Ga0335027_0135042Not Available1832Open in IMG/M
3300034101|Ga0335027_0698584Not Available602Open in IMG/M
3300034101|Ga0335027_0822801Not Available536Open in IMG/M
3300034101|Ga0335027_0857491Not Available520Open in IMG/M
3300034104|Ga0335031_0169035Not Available1501Open in IMG/M
3300034104|Ga0335031_0227466All Organisms → cellular organisms → Bacteria → Proteobacteria1249Open in IMG/M
3300034106|Ga0335036_0025060All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae4746Open in IMG/M
3300034106|Ga0335036_0653907Not Available629Open in IMG/M
3300034106|Ga0335036_0820252Not Available536Open in IMG/M
3300034112|Ga0335066_0205701Not Available1163Open in IMG/M
3300034112|Ga0335066_0334552All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → unclassified Alcaligenaceae → Alcaligenaceae bacterium845Open in IMG/M
3300034166|Ga0335016_0271292Not Available1056Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater34.71%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous18.18%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake7.44%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient7.44%
Freshwater And SedimentEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment6.61%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater4.96%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater3.31%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater3.31%
LakeEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Lake2.48%
Saline WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water2.48%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake1.65%
LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Lake1.65%
AquaticEnvironmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic1.65%
Fracking WaterEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water1.65%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater0.83%
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment0.83%
Drinking Water Treatment PlantEnvironmental → Aquatic → Freshwater → Drinking Water → Unclassified → Drinking Water Treatment Plant0.83%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2020350000Saline water microbial communities from Qinghai Lake, Tibetan Plateau - High mountain lake (assembled)EnvironmentalOpen in IMG/M
2022920000Saline water microbial communities from Qinghai Lake, Tibetan Plateau - High mountain lake (unassembled)EnvironmentalOpen in IMG/M
2199352018Saline water microbial communities from Qinghai Lake, Tibetan Plateau -Sample 11630EnvironmentalOpen in IMG/M
3300002161Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USAEnvironmentalOpen in IMG/M
3300002202Freshwater microbial communities from San Paulo Zoo lake, Brazil - SEP 2012EnvironmentalOpen in IMG/M
3300002203Freshwater microbial communities from San Paulo Zoo lake, Brazil - MAR 2013EnvironmentalOpen in IMG/M
3300002212Freshwater microbial communities from San Paulo Zoo lake, Brazil - JAN 2013EnvironmentalOpen in IMG/M
3300002408Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)EnvironmentalOpen in IMG/M
3300002835Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)EnvironmentalOpen in IMG/M
3300005805Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USAEnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300007212Combined Assembly of cyanobacterial bloom in Punggol water reservoir, Singapore (Diel cycle-Bottom layer) 7 sequencing projectsEnvironmentalOpen in IMG/M
3300007538Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007539Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaGEnvironmentalOpen in IMG/M
3300007541Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaGEnvironmentalOpen in IMG/M
3300007542Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaGEnvironmentalOpen in IMG/M
3300007960Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaGEnvironmentalOpen in IMG/M
3300008448Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigsEnvironmentalOpen in IMG/M
3300010354Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNAEnvironmentalOpen in IMG/M
3300010370Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_DNAEnvironmentalOpen in IMG/M
3300011984Freshwater microbial communities from drinking water treatment plant - The University of Hong Kong - Raw_water_201107EnvironmentalOpen in IMG/M
3300012000Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007AEnvironmentalOpen in IMG/M
3300013131 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10mEnvironmentalOpen in IMG/M
3300017774Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.DEnvironmentalOpen in IMG/M
3300019784Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300020048Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915EnvironmentalOpen in IMG/M
3300020506Freshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020543Freshwater microbial communities from Lake Mendota, WI - 29JUN2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020553Freshwater microbial communities from Lake Mendota, WI - 17MAY2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020554Freshwater microbial communities from Lake Mendota, WI - 17AUG2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020556Freshwater microbial communities from Lake Mendota, WI - 03AUG2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300022176Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v2)EnvironmentalOpen in IMG/M
3300022190Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.NEnvironmentalOpen in IMG/M
3300022198Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300023174Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505EnvironmentalOpen in IMG/M
3300025647Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025655Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025687Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027793Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027805Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)EnvironmentalOpen in IMG/M
3300029930Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727EnvironmentalOpen in IMG/M
3300029933Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727_2EnvironmentalOpen in IMG/M
3300031787Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114EnvironmentalOpen in IMG/M
3300031857Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125EnvironmentalOpen in IMG/M
3300033816Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005EnvironmentalOpen in IMG/M
3300033981Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011EnvironmentalOpen in IMG/M
3300033993Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037EnvironmentalOpen in IMG/M
3300033995Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2014-rr0056EnvironmentalOpen in IMG/M
3300034012Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027EnvironmentalOpen in IMG/M
3300034019Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Sep2014-rr0049EnvironmentalOpen in IMG/M
3300034061Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028EnvironmentalOpen in IMG/M
3300034062Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045EnvironmentalOpen in IMG/M
3300034073Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XLEnvironmentalOpen in IMG/M
3300034082Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088EnvironmentalOpen in IMG/M
3300034092Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2012-rr0069EnvironmentalOpen in IMG/M
3300034096Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15Oct2015-rr0098EnvironmentalOpen in IMG/M
3300034101Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107EnvironmentalOpen in IMG/M
3300034104Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120EnvironmentalOpen in IMG/M
3300034106Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131EnvironmentalOpen in IMG/M
3300034112Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Aug2014-rr0191EnvironmentalOpen in IMG/M
3300034166Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Sep2012-rr0079EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
Qinghai_729702020350000Saline WaterFTTTMTNPTPLEVLSYLTDGTFVTVVAVLVIGFIILNALNRIGGRR
QL_na_78161002022920000Saline WaterMEAATVWRFTTTMTNPTPLEVLSYLTDGTFVTVVAVLVIGFIILNALNRIGG
QLA_006330802199352018Saline WaterMTNPTPLEVLSYLTDGTFVTVVAVLVIGFIILNALNRIGGRR
JGI24766J26685_1001713543300002161Freshwater And SedimentMTTPTLLEVLSYITDPVFTTVIVITIGTFAALNAINKIGGAR*
metazooDRAFT_124362513300002202LakeEVLSYLTDPVFTTVVVLTIGTFAALQLINKLGGAR*
metazooDRAFT_129660123300002203LakeMSTLEVLSYLTDPVFTAVVALTIGTFVALEAINKMGGRP*
metazooDRAFT_137218923300002212LakeMSTLEVLSYLTDPVFTAVVALTIGTFVALEAINKIGGRP*
B570J29032_10912740523300002408FreshwaterMSALEVFSYLTDTTFTTVVLLTIGTFAALQFINKIGGAR*
B570J29032_10923929123300002408FreshwaterMSALEVLSYLTDPVFCTVVVLSVGTFVALEIINKIGGAR*
B570J29032_10926227633300002408FreshwaterMTPHHTPTLLEVLSYLTDPVFTTVIVLTIGTFAALQFINKIGGAR*
B570J29032_10935549523300002408FreshwaterMTNTTHTTLEVLSYLADPTFTVVVVLVVGAFAALTAINKIGGAR*
B570J40625_10063784723300002835FreshwaterMSALEALSYLTDATFVSLVVLLVIGFIALNAINKIGGRR*
Ga0079957_105277363300005805LakeMTPHHTPTLLEVLSYLTDPVFTTVVVLTIGTFAALQFINRIGGAQ*
Ga0079957_137206523300005805LakeMTHHTTPTLLEVLSYITDPVFTTVVVLTVGTFAALTAINRIGGAR*
Ga0070749_1029149733300006802AqueousMTHHTTPTMLEVLSYLTDPTFTTVVVLVVGTYAALQAANRIGGAK*
Ga0070749_1059122823300006802AqueousMTHHTTPTLLEVLSYLTDPTFTAVVVLVVGTYAALEAVNRIGGAR*
Ga0103958_109417233300007212Freshwater LakeMTNTTPTLLEVLSYLTDPVFTTVVVLAVGTFAALNAINRIGGAR*
Ga0099851_106161443300007538AqueousMKHHTTPTLLEVLSYLTDATFTSVVVATVAFAFTLQVINRIGGAK*
Ga0099851_108631253300007538AqueousSMTHTTPTMLEVLSYLTDATFTSVVVATIAFAFTLQAINRIGGAR*
Ga0099849_122509023300007539AqueousMTHHTTPTLLEVMSYLTDATFTSVVVATIAFAFTLQAINRIGGAK*
Ga0099848_102394163300007541AqueousMSALEVLSYLTDSTFTTVVVLTISTFAALQFIERIGGAK*
Ga0099848_122719413300007541AqueousQALSMTHHTTPTLLEVASYLTDATFTSVVVATIAFAFTLQAINRIGGAK*
Ga0099848_123763323300007541AqueousMTHHTTPTLLEVLSYPTDATFTSVVVATIAFAFTLQAINRIGGAR*
Ga0099848_124840233300007541AqueousQALSMTHHTTPTLLEVASYLTDATFTSVVVATIAFAFTLQVINRIGGAR*
Ga0099848_129559023300007541AqueousMTHHTPTMLEVLSYLTDPTFTAVVVLVVGTYAALEAVNRIGGAK*
Ga0099848_129835213300007541AqueousMTHHTTPTLLEVASYLTDATFTSVVVATIAFAFTLQ
Ga0099846_110094323300007542AqueousMSALEVFSYLTDSTFTTVVVLTISTFAALQFIERIGGAK*
Ga0099846_122761223300007542AqueousMTHHTTPTLLEVLSYLTDATFTSVVVATIAFAFTLQAINRIGGAR*
Ga0099846_126672733300007542AqueousMTHTTPTLLEVLSYLTDATFTSVVVATIAFAFTLQAINRIGGAR*
Ga0099850_120424723300007960AqueousMTHHTTPTPLEVMSYLTDATFTSVVVATIAFAFTLQAISRIGGAK*
Ga0099850_120692713300007960AqueousTTSTPLEVLSYLTDATFTSVVVATIAFAFTLQAINRIGGAR*
Ga0099850_129816623300007960AqueousMTHHTTPTMLEVLSYLTDPTFTAVVVLVVGTYAALEAVNRIGGAK*
Ga0114876_1016046103300008448Freshwater LakeMTQSTLLEVLSYLTDPVFTTVVVLVVGTFAALNAINRIGGAK*
Ga0129333_1043303123300010354Freshwater To Marine Saline GradientMPTDAIRLSMTHTTPTLLEVLSYLTDPTFTSVVVLVVGTFAALTAINRIGGRP*
Ga0129333_1062639633300010354Freshwater To Marine Saline GradientMPSFAFLMTPHHTPTLLEVLSYLTDPVFTTVVVLTIGTFAALTAIHKIGGAR*
Ga0129333_1063391133300010354Freshwater To Marine Saline GradientMPSFAKTLMHTTHTTPLEVLSYLTDPVFTTVVVLVVGAFAALEAINRIGGAK*
Ga0129333_1110061633300010354Freshwater To Marine Saline GradientMTHHTTPTLLEVLSYLTDTTFTSVVVATIAFAFTLQ
Ga0129333_1127750523300010354Freshwater To Marine Saline GradientMTHHTTPTLLEVLSYLTDPVFTTVIVLTIGTFAALLFINKIGGAR*
Ga0129333_1139264923300010354Freshwater To Marine Saline GradientMTNTTPTLLEVLGYITDPVFTTVVVLTVGTFAALTAINRIGGRP*
Ga0129333_1164759623300010354Freshwater To Marine Saline GradientMSALEVFSYLTDPTFTAVIVLTIGTFVALQFIDRIGGAQ*
Ga0129336_1024179523300010370Freshwater To Marine Saline GradientMPSFAFLMTHHTTPTLLEVLSYLTDPVFTTVVVLTVGTFAALTAINRIGGRP*
Ga0129336_1029509823300010370Freshwater To Marine Saline GradientMPRFAFLMTPHHTPTLLEVLSYLTDPVFTTVIVLTIGTFAALQFINRIGGAQ*
Ga0119931_103721333300011984Drinking Water Treatment PlantMTSLEVLSYLTDSTFTTVVILVVGTFAALQAIHRIGGAK*
Ga0119951_104255953300012000FreshwaterMTHTTHTTLEVLSILTDPTFTAVVVLVVGTFAALTAIHKIGGAR*
(restricted) Ga0172373_1011667933300013131FreshwaterMTPLEVLSYLTDTTFTTIVLLVVGTFVALEAINKIGGAK*
Ga0181358_119493723300017774Freshwater LakeMTPTPLEVLSYLTDATFMSLVVLLVIGFIALSAINKIGGRR
Ga0181358_125884123300017774Freshwater LakeMTHPTPLEVLSYLTDATFVSLVVLLVVGFIALNAINKIGGRR
Ga0181359_101393263300019784Freshwater LakeMTPTPLEVLSYLTDATFVSLVVLLVVGFVALNAINKIGGQR
Ga0181359_104899553300019784Freshwater LakeMTPTPLEVISYLTDATFVSLVVLLVIGFIALNAINKIGGRR
Ga0181359_105827743300019784Freshwater LakeMSALEVLSYLTDPVFCTVVALAVGTFVALEIINKIGGAR
Ga0181359_107740723300019784Freshwater LakeMTPHHTPTLLEVLSYLTDPVFATVIVLTIGTFVALEIINKIGGAR
Ga0207193_111551643300020048Freshwater Lake SedimentMTPTPLEVLSYLTDATFVSLVVLLVIGFIALNAINKIGGRR
Ga0208091_101892023300020506FreshwaterMSALEVLSYLTDPVFCTVVVLSVGTFVALEIINKIGGAR
Ga0208089_100591423300020543FreshwaterMSALEALSYLTDATFVSLVVLLVIGFIALNAINKIGGRR
Ga0208855_100213563300020553FreshwaterMTNTTHTTLEVLSYLADPTFTVVVVLVVGAFAALTAINKIGGAR
Ga0208599_100552543300020554FreshwaterMSALEVFSYLTDTTFTTVVLLTIGTFAALQFINKIGGAR
Ga0208486_101809043300020556FreshwaterMSALEVLSYLTDPVFCTVVVLSVGTFVALEIINKIGGAK
Ga0212031_107198223300022176AqueousQRHQASMTHHTTPTLLEVMSYLTDATFTSVVVATIAFAFTLQAINRIGGAK
Ga0181354_101541843300022190Freshwater LakeMPRFAFLMTPHHTPTLLEVLSYLTDPVFATVIVLTIGTFVALEIINKIGGAR
Ga0181354_112674423300022190Freshwater LakeMTPTPLEVLSYLTDATFVSLVVLLVIGFIAINAINKIGGRR
Ga0196905_110731033300022198AqueousMTHHTTPTVLEVMSYLTDATFTSVVVATIAFAFTLQVINRIGGAR
Ga0214921_10021904143300023174FreshwaterMTHTTPTLLEVLSYLTDPTFTSVVVLVVGTFAALTAINKIGGAR
Ga0208160_111008123300025647AqueousMTHTTPTLLEVLSYLTDATFTSVVVATIAFAFTLQAINRIGGAR
Ga0208795_104956123300025655AqueousMTHHTTPTLLEVLSYLTDATFTSVVVATIAFAFTLQAINRIGGAR
Ga0208019_120594123300025687AqueousMTHTTPTMLEVLSYLTDATFTSVVVATIAFAFTLQAINRIGGAR
Ga0209972_1009852943300027793Freshwater LakeMTQPTLLEVLSYITDPVFTTVVVLTIGTFAALNAINKIGGAK
Ga0209229_1000430043300027805Freshwater And SedimentMTTPTLLEVLSYITDPVFTTVIVITIGTFAALNAINKIGGAR
Ga0209229_1002129773300027805Freshwater And SedimentMSTLEVLTYLTDSTFTSVVVVAVATFAALQAIHRIGGQR
Ga0209229_1006716113300027805Freshwater And SedimentETTKHTTSMTQPTLLEVLSYITDPVFTTVVVLTIGTFAALNAINRIGGSK
Ga0209229_1011587243300027805Freshwater And SedimentMTPHHTPTLLEVLSYLTDPVFTTVIVLTIGTFAALQFINKIGGAR
Ga0209229_1013363733300027805Freshwater And SedimentMTTPTLLEVLSYITDPVFTTVVVLAVGTFAALNAINRIGGAK
Ga0209229_1027456823300027805Freshwater And SedimentMTQSTLLEVLSYLTDPVFTTVVVLVVGTFAALNAINRIGGAK
Ga0209229_1029611033300027805Freshwater And SedimentMTQPTLLEVLSYLTDPVFATVVVLTIGTFAALNAINKIGGAK
Ga0119944_101850723300029930AquaticMSTLEVLSYLTDPTFTTVLLLVFGTFGALQAIHRIGGAK
Ga0119945_103120123300029933AquaticMSTLEVLSYLTDSTFTTVVIFVVGAFAALNAIHKIGGAK
Ga0315900_10018544123300031787FreshwaterMTQPTLLEVLSYLTDTVFTTVVVLTIGTFAALNAINKIGGAK
Ga0315900_1020434553300031787FreshwaterMTPHHTPTLLEVMSYLTDPVFTTVVVLTVGTFAALQFINKIGGAR
Ga0315900_1029840123300031787FreshwaterMTQPTLLEVLSYITDPVFTTVVVITIGTFAALNAINRIGGAK
Ga0315909_1041840133300031857FreshwaterMTIIEALTYLTDSTFTSVVVVAVATFAALQAIHRIGGRQ
Ga0334980_0000446_597_7313300033816FreshwaterMTNTTHTTLEVLSYLTDPTFTVVVVLVVGAFAALTAINKIGGAR
Ga0334980_0047520_370_5043300033816FreshwaterMTNTTHTLLEVLSYLTDPTFTVVVVLVVGAFAALTAINKIGGAR
Ga0334980_0093516_301_4593300033816FreshwaterMPSFAFSMTHHTTPTLLEVLSYITDPVFTTVVVLTVGTFAALQFINKIGGAK
Ga0334982_0145100_231_3893300033981FreshwaterMPSFAFLMTPHHTPTLLEVLSYLTDPVFTTVIVLTIGTFAALQFINKIGGAR
Ga0334982_0153682_346_4803300033981FreshwaterMTNTTPTTLEVLSYLTDPTFTAVVVLVVGTFAALTAINKIGGAR
Ga0334982_0212503_147_2813300033981FreshwaterMTNTTPTLLEVLGYLTDPVFTTVIVLTIGTFAALQFINKIGGAR
Ga0334994_0336132_632_7513300033993FreshwaterMSALEALSYLTDTTFTTVVLLTIGTFAALQFINKIGGAR
Ga0334994_0384450_362_4813300033993FreshwaterMSALEVFSYLTDPVFCTVVVLSVGTFVALELINKIGGAR
Ga0335003_0000132_5270_53953300033995FreshwaterMTPTPLEVLSYLTDATFMSLTGLLVVGFILLNAINKIGGRR
Ga0334986_0275005_554_6733300034012FreshwaterMSALEVFSYLTDPVFCTVVVLAVGTFVALEIINKIGGAR
Ga0334986_0390027_304_4233300034012FreshwaterMSALEVLSYLTDATFTTVVLLTIGTFAALQFINRIGGAK
Ga0334998_0253038_621_7583300034019FreshwaterMTHHTTPTLLEVLSYLTDPVFTTVAVLTIGTFAALQFINKIGGAR
Ga0334987_0135336_1448_15823300034061FreshwaterMTNTTPTLLEVLSYLTDPTFTAVIVITIGTFAALQFINRIGGAR
Ga0334995_0003686_1310_14713300034062FreshwaterMPTDAIRLSMTNTTPTLLEVLSYLTDPTFTAVVVLVVGTFAALTAINKIGGAR
Ga0334995_0052434_385_5433300034062FreshwaterMPRFAFLMTPHHTPTLLEVLSYLTDPVFTTVVVLTVGTFAALTAIHKIGGRP
Ga0334995_0068892_2408_25273300034062FreshwaterMSALEVLSYLTDPVFCTVVVLSVGTFVALELINKIGGAR
Ga0334995_0330410_2_1153300034062FreshwaterALEALSYLTDTTVTTVVLLTIGTFAALQFINKIGGAR
Ga0310130_0018543_1294_14523300034073Fracking WaterMPSFAFLMTPHHTPTLLEVLGYLTDPVFTTVIVLTIGTFAALQFINKIGGAQ
Ga0310130_0214535_459_5963300034073Fracking WaterMTHHTTPTLLEVLSYLTDATFTSVVVATIAVAFTLQLINRIGGAR
Ga0335020_0001322_3736_38553300034082FreshwaterMSALEALSYLTDATFVSLVVLLVVGFVAFNAINKIGGRR
Ga0335020_0008147_3507_36323300034082FreshwaterMTPTPLEVLSYLTDATFVSLVVLLVVGFVALNAINKIGGRR
Ga0335010_0141125_2_1123300034092FreshwaterMSALEVLSYLTDPVFCTVVVLSVGTFVALEIINKIGG
Ga0335010_0201539_979_10983300034092FreshwaterMSALEALSYLTDTTFTTVVLLTIGTFAALQFINRIGGAK
Ga0335010_0544424_1_1443300034092FreshwaterMPSFAFLMTPHTTPTLLEVLSYLTDPTFTAVVVLVVGTFAALTAINKI
Ga0335025_0015912_2171_22903300034096FreshwaterMSALEVLSYLTDSTFTAVVVLIAGAFAALTAINKIGGAR
Ga0335025_0040230_2937_30743300034096FreshwaterMTPHHTPTLLEVLSHLTDPTFTVVVVLVVGAFAALTAINKIGGAE
Ga0335027_0016249_2657_27763300034101FreshwaterMSALEVLSYLTDTTFTTVVLLTIGTFAALQFINRIGGAQ
Ga0335027_0026530_1226_13633300034101FreshwaterMTHHTTPTLLEVLSYLTDPTFTAVIVITIGTFAALQFINKIGGAK
Ga0335027_0066274_2013_21323300034101FreshwaterMSALEVLSYLTDSTFTTVVLLTIGTFAALQFISRIGGAK
Ga0335027_0091752_2205_23363300034101FreshwaterTNTTPTLLEVLSYLTDPVFTTVIVLTIGTFAALQFINKIGGAR
Ga0335027_0135042_187_3213300034101FreshwaterMTNTTPTLLEVMGYLTDPVFTTVVVLTIGTFAALQFINRIGGAR
Ga0335027_0698584_53_2113300034101FreshwaterMPSFAFLMTPHTTPTLLEVLSYLTDPTFTAVVVLVVGTFAALTAINKIGGAR
Ga0335027_0822801_98_2353300034101FreshwaterMTHHTTPTLLEVLSYITDPVFTTVVVLTVGTFAALTAINRIGGRP
Ga0335027_0857491_1_1083300034101FreshwaterEVLSYLTDPVFCTVVVLAVGTFVALEIINKIGGAR
Ga0335031_0169035_3_1313300034104FreshwaterMTNTTPTTLEVLSYLTDPTFTVVVVLVVGAFAALTAINKIGGA
Ga0335031_0227466_1117_12483300034104FreshwaterTNTTHTTLEVLSHLTDPTFTVVVVLVVGAFAALTAINKIGGAR
Ga0335036_0025060_3361_34803300034106FreshwaterMSALEVLSYLTDPVFCTVVVLAVGTFVALEAINKIGGAR
Ga0335036_0653907_173_2923300034106FreshwaterMSALEVLSYLTDPVFCTVVALAVGTFVALEIINKIGGAK
Ga0335036_0820252_309_4673300034106FreshwaterMPSFAFPMTHHTTPTLLEVLSYLTDPTFTAVIVITIGTFAALQFINKIGGAR
Ga0335066_0205701_517_6363300034112FreshwaterMSALEVLSYLTDPVFCTVVLLTIGTFAALQFINRIGGAK
Ga0335066_0334552_1_1203300034112FreshwaterPTLLEVLGYLTDPVFTTVIVLTIGTFAALQFINKIGGAR
Ga0335016_0271292_2_1363300034166FreshwaterMTPHTTPTLLEVLSYLTDPTFTAVIVLTIGTFAALQFINRIGGAR


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