Metagenome / Metatranscriptome Family F072219

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F072219
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	48 residues
Representative Sequence	MSGTVSRGREAGQQAEALAAAEARGSRGRGRWVALGIVVVVAAGA
Number of Associated Samples	103
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	98.29 %
% of genes near scaffold ends (potentially truncated)	96.69 %
% of genes from short scaffolds (< 2000 bps)	90.08 %
Associated GOLD sequencing projects	102
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (76.860 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (26.446 % of family members)
Environment Ontology (ENVO)	Unclassified (26.446 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.934 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 57.53% β-sheet: 0.00% Coil/Unstructured: 42.47%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF00072	Response_reg	5.79
PF00672	HAMP	2.48
PF00486	Trans_reg_C	2.48
PF02518	HATPase_c	1.65
PF01740	STAS	0.83
PF13581	HATPase_c_2	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	76.86 %
Unclassified	root	N/A	23.14 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	76.86 %
Unclassified	root	N/A	23.14 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	76.86 %
Unclassified	root	N/A	23.14 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	72.73 %
Unclassified	root	N/A	23.14 %

Name	Rank	Taxonomy	Distribution
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	53.72 %
Unclassified	root	N/A	23.14 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	18.18 %

Name	Rank	Taxonomy	Distribution
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	53.72 %
Unclassified	root	N/A	23.14 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	11.57 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	53.72 %
Unclassified	root	N/A	23.14 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	4.96 %
Catenulisporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales	0.83 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.83 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	53.72 %
Unclassified	root	N/A	23.14 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.96 %
Actinospicaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae	0.83 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	0.83 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	53.72 %
Unclassified	root	N/A	23.14 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.96 %
Actinocrinis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae → Actinocrinis	0.83 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	0.83 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	53.72 %
Unclassified	root	N/A	23.14 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.96 %
Actinocrinis puniceicyclus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae → Actinocrinis → Actinocrinis puniceicyclus	0.83 %
Actinomadura rudentiformis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura rudentiformis	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000955\|JGI1027J12803_100310073	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	705	Open in IMG/M
3300001661\|JGI12053J15887_10417119	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	644	Open in IMG/M
3300001661\|JGI12053J15887_10555399	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	547	Open in IMG/M
3300002917\|JGI25616J43925_10305528	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	592	Open in IMG/M
3300004091\|Ga0062387_100595930	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	791	Open in IMG/M
3300004092\|Ga0062389_102411108	Not Available	696	Open in IMG/M
3300004092\|Ga0062389_103015703	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	630	Open in IMG/M
3300005093\|Ga0062594_102981545	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	528	Open in IMG/M
3300005332\|Ga0066388_100407270	All Organisms → cellular organisms → Bacteria	2005	Open in IMG/M
3300005434\|Ga0070709_11297228	Not Available	587	Open in IMG/M
3300005436\|Ga0070713_100553042	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1090	Open in IMG/M
3300005437\|Ga0070710_11465793	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	512	Open in IMG/M
3300005602\|Ga0070762_10298342	All Organisms → cellular organisms → Bacteria	1015	Open in IMG/M
3300005602\|Ga0070762_10565128	All Organisms → cellular organisms → Bacteria	752	Open in IMG/M
3300005764\|Ga0066903_105265401	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300005764\|Ga0066903_108041982	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	541	Open in IMG/M
3300006755\|Ga0079222_10710244	Not Available	798	Open in IMG/M
3300006796\|Ga0066665_10410648	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1118	Open in IMG/M
3300006806\|Ga0079220_10114621	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1425	Open in IMG/M
3300009038\|Ga0099829_10660639	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	869	Open in IMG/M
3300009038\|Ga0099829_10825008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	770	Open in IMG/M
3300009088\|Ga0099830_10695739	Not Available	837	Open in IMG/M
3300009090\|Ga0099827_10305958	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1345	Open in IMG/M
3300009143\|Ga0099792_10262326	Not Available	1010	Open in IMG/M
3300009177\|Ga0105248_11049524	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	921	Open in IMG/M
3300009520\|Ga0116214_1116913	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	984	Open in IMG/M
3300009553\|Ga0105249_12319064	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	609	Open in IMG/M
3300009792\|Ga0126374_11402745	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	569	Open in IMG/M
3300010048\|Ga0126373_12335348	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	595	Open in IMG/M
3300010333\|Ga0134080_10665984	Not Available	513	Open in IMG/M
3300010358\|Ga0126370_11463788	Not Available	648	Open in IMG/M
3300010360\|Ga0126372_11980310	Not Available	629	Open in IMG/M
3300010361\|Ga0126378_12353214	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	608	Open in IMG/M
3300010376\|Ga0126381_100239015	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae → Actinocrinis → Actinocrinis puniceicyclus	2453	Open in IMG/M
3300010376\|Ga0126381_101089036	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1154	Open in IMG/M
3300010376\|Ga0126381_104752416	Not Available	523	Open in IMG/M
3300010880\|Ga0126350_11392519	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	790	Open in IMG/M
3300010880\|Ga0126350_12148659	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1978	Open in IMG/M
3300011271\|Ga0137393_10903089	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	754	Open in IMG/M
3300012205\|Ga0137362_10166255	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1892	Open in IMG/M
3300012209\|Ga0137379_10974228	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	753	Open in IMG/M
3300012209\|Ga0137379_11342343	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	620	Open in IMG/M
3300012210\|Ga0137378_11336666	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	632	Open in IMG/M
3300012211\|Ga0137377_10268027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1639	Open in IMG/M
3300012363\|Ga0137390_11936017	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	517	Open in IMG/M
3300012473\|Ga0157340_1029867	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	504	Open in IMG/M
3300012917\|Ga0137395_10764846	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	699	Open in IMG/M
3300012917\|Ga0137395_10955822	Not Available	616	Open in IMG/M
3300012925\|Ga0137419_11536369	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	565	Open in IMG/M
3300012930\|Ga0137407_10009102	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6936	Open in IMG/M
3300013105\|Ga0157369_10746553	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1007	Open in IMG/M
3300013307\|Ga0157372_11769026	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	711	Open in IMG/M
3300014325\|Ga0163163_13010514	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	526	Open in IMG/M
3300014501\|Ga0182024_11344117	Not Available	826	Open in IMG/M
3300015242\|Ga0137412_10837398	Not Available	672	Open in IMG/M
3300016422\|Ga0182039_11731699	Not Available	572	Open in IMG/M
3300017993\|Ga0187823_10178700	Not Available	685	Open in IMG/M
3300018001\|Ga0187815_10361730	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	617	Open in IMG/M
3300018007\|Ga0187805_10496437	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	572	Open in IMG/M
3300018032\|Ga0187788_10502423	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	524	Open in IMG/M
3300019887\|Ga0193729_1051705	All Organisms → cellular organisms → Bacteria	1668	Open in IMG/M
3300021171\|Ga0210405_11397210	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	510	Open in IMG/M
3300021181\|Ga0210388_11263036	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	625	Open in IMG/M
3300021433\|Ga0210391_10766648	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	755	Open in IMG/M
3300021478\|Ga0210402_11486821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura rudentiformis	605	Open in IMG/M
3300021560\|Ga0126371_12100732	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	681	Open in IMG/M
3300021560\|Ga0126371_13559501	Not Available	526	Open in IMG/M
3300022557\|Ga0212123_10228936	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1352	Open in IMG/M
3300022557\|Ga0212123_10449604	Not Available	850	Open in IMG/M
3300024288\|Ga0179589_10571479	Not Available	528	Open in IMG/M
3300025627\|Ga0208220_1009657	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3311	Open in IMG/M
3300025927\|Ga0207687_10340477	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1219	Open in IMG/M
3300025941\|Ga0207711_11366116	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	651	Open in IMG/M
3300026327\|Ga0209266_1120076	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1118	Open in IMG/M
3300026498\|Ga0257156_1100737	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	601	Open in IMG/M
3300026508\|Ga0257161_1007292	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1946	Open in IMG/M
3300026508\|Ga0257161_1100237	Not Available	603	Open in IMG/M
3300026551\|Ga0209648_10049159	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3619	Open in IMG/M
3300027648\|Ga0209420_1036718	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1513	Open in IMG/M
3300027681\|Ga0208991_1108127	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	832	Open in IMG/M
3300027727\|Ga0209328_10204154	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	596	Open in IMG/M
3300027738\|Ga0208989_10119485	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	893	Open in IMG/M
3300027895\|Ga0209624_10287330	Not Available	1095	Open in IMG/M
3300027905\|Ga0209415_10443671	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1025	Open in IMG/M
3300027908\|Ga0209006_10871755	Not Available	725	Open in IMG/M
3300028807\|Ga0307305_10037099	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2237	Open in IMG/M
3300028828\|Ga0307312_10354731	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	960	Open in IMG/M
3300028828\|Ga0307312_10544922	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	767	Open in IMG/M
3300028884\|Ga0307308_10531382	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	564	Open in IMG/M
3300031546\|Ga0318538_10084990	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1612	Open in IMG/M
3300031640\|Ga0318555_10522078	Not Available	643	Open in IMG/M
3300031680\|Ga0318574_10168563	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1250	Open in IMG/M
3300031681\|Ga0318572_10074368	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1877	Open in IMG/M
3300031723\|Ga0318493_10085127	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1564	Open in IMG/M
3300031744\|Ga0306918_10938205	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	673	Open in IMG/M
3300031747\|Ga0318502_10095298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1643	Open in IMG/M
3300031748\|Ga0318492_10026011	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2595	Open in IMG/M
3300031751\|Ga0318494_10734224	Not Available	578	Open in IMG/M
3300031753\|Ga0307477_10573063	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	763	Open in IMG/M
3300031765\|Ga0318554_10401503	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	778	Open in IMG/M
3300031768\|Ga0318509_10622543	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	601	Open in IMG/M
3300031771\|Ga0318546_10151894	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1561	Open in IMG/M
3300031778\|Ga0318498_10305787	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	713	Open in IMG/M
3300031781\|Ga0318547_10108137	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1597	Open in IMG/M
3300031782\|Ga0318552_10267006	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	869	Open in IMG/M
3300031805\|Ga0318497_10054231	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2074	Open in IMG/M
3300031821\|Ga0318567_10493477	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	695	Open in IMG/M
3300031823\|Ga0307478_10509552	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1003	Open in IMG/M
3300031832\|Ga0318499_10042058	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1686	Open in IMG/M
3300031832\|Ga0318499_10134780	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	962	Open in IMG/M
3300031835\|Ga0318517_10050746	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1737	Open in IMG/M
3300031896\|Ga0318551_10540876	Not Available	670	Open in IMG/M
3300031896\|Ga0318551_10677997	Not Available	597	Open in IMG/M
3300031897\|Ga0318520_10767105	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	604	Open in IMG/M
3300031912\|Ga0306921_12471501	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	540	Open in IMG/M
3300032008\|Ga0318562_10229409	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1077	Open in IMG/M
3300032025\|Ga0318507_10283530	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	720	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.39%
Host-Associated	Host-Associated	6.61%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.95%
Aquatic	Environmental → Aquatic	7.44%
Plants	Host-Associated → Plants	6.61%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	85.95%
Freshwater	Environmental → Aquatic → Freshwater	5.79%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.96%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.65%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.83%
Roots	Host-Associated → Plants → Roots	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	70.25%
Loam	Environmental → Terrestrial → Soil → Loam	14.05%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.96%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.65%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.65%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.83%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	32.23%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	30.58%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.96%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.13%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.31%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.48%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.48%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.48%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.65%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.83%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.83%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.83%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	26.45%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	14.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.09%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.13%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.31%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.31%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.48%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.48%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.48%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.65%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.65%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.65%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.65%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.65%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.65%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	1.65%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.83%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.83%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.83%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012473	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.12.yng.090610	Host-Associated	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017821	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2	Environmental	Open in IMG/M
3300017993	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018032	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MG	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025627	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-1 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300026508	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-A	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027681	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027738	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J12803_1003100732	3300000955	Soil	VSKTVSRGREAGQQAEVLAAGEVRRSRGRRRWAALGIVAVV
JGI12053J15887_104171192	3300001661	Forest Soil	VSETVSRGREAGRQAEAQAAGEARGSRGRRRGGWVTAGLG
JGI12053J15887_105553992	3300001661	Forest Soil	MSGMVSRRRESGQQTEAQAAVEVRRPRGRGRWVALGI
JGI25616J43925_103055282	3300002917	Grasslands Soil	VSETVSRGREAGQYAEAEVAAEARGSRGRGRWVALGIVAVVAAG
Ga0062387_1005959302	3300004091	Bog Forest Soil	VSETVSRGREAGQQAEALADVGARGSRGPRRWVALGIVVVVAAGAVSAWRAGVFSA
Ga0062389_1024111081	3300004092	Bog Forest Soil	MSGTVSRGREAGQQEAGQQAEARGSRGRARWVALGIAAVVAAGVVSAWQAGVFSPA
Ga0062389_1030157031	3300004092	Bog Forest Soil	MDSERGREAGQQAGALAAAEARGSRGLRRWVALGIVFVVAAGAVSA
Ga0062594_1029815451	3300005093	Soil	VSKTVSRGREAGQQAEVLAAGEVRGSRGRRRWAALGIVAVVAAGVVSAWRVGAFSPAASSGAGQR
Ga0066388_1004072703	3300005332	Tropical Forest Soil	VSGTVSRGRQAGRRTVAHVAAEAGKPRGRGRWAALGVVVVMAAGAVPA
Ga0070709_112972281	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	VSGTVSRGREAGRQTEAHAAAEARRPRGRGRWAALGIVVVMAAGA
Ga0070713_1005530423	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MDRRTVSATASRGRGTGQQPEVLSAALTRGPRGRGRWVALGIAVVVVAAGVGSAWQAGAF
Ga0070710_114657931	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	VSETVSRGREAGRQVEVLAAGEARVSRGRRRWVALGIVAVVAAGVVS
Ga0070762_102983421	3300005602	Soil	MSETVSRGREAGPQAEVLAAVEARGWRGRGRWVALGVVVVVLAAAVSAWRAGVFSPAA
Ga0070762_105651281	3300005602	Soil	MVSETFSRGREAGQQADALTAAGARGPRGRGRWVALGIVVMVAAGAISAWRAGVFSPAAASGTWPRGAPPP
Ga0066903_1037437812	3300005764	Tropical Forest Soil	VSGAVSRRQAAGRQAEALAAEGATGSRGHRLGRWVALGIVVV
Ga0066903_1052654011	3300005764	Tropical Forest Soil	VSRTVPRSREAGQQAEDLAAAQPRGPRRRGRWLALGTVAVVAAG
Ga0066903_1080419821	3300005764	Tropical Forest Soil	VSKTISRGRQAGQQANVLVAAEARGPRGRRRWAALGI
Ga0079222_107102441	3300006755	Agricultural Soil	VSETVPRGREAEQQAEVLPAGESRGSRGRRRWLALGIVAV
Ga0066665_104106481	3300006796	Soil	VSKTGSRGREAGQQAEVLAAGEVRGSRGRRRWAALGIVAVVAAG
Ga0079220_101146211	3300006806	Agricultural Soil	VGETVSPGRETGRQAAALAVAEARGPRRRGGWVAAGLVVVLAAGMVSAWRAG
Ga0099829_106606393	3300009038	Vadose Zone Soil	VSGTVSRGREAGWQAEAQAAGEARGSRGRRRGGWVAAGLVVVLAAG
Ga0099829_108250082	3300009038	Vadose Zone Soil	MSGTVSRGREAELEAEALATAGARGSRGRGRWVALGIVVVVAAGAVSAWRAGVFSPAA
Ga0099830_106957392	3300009088	Vadose Zone Soil	VSETVPRGREAGQAEVLATTEPRGSRGRGRWVALGLVAVVAAGTVSAWRAGVFSPAASSG
Ga0099827_103059583	3300009090	Vadose Zone Soil	VSGTVSRGREAGWQAEAQAAGEARGSRGRRRGGWVAAGLVVVLAAGVVSAWR
Ga0099792_102623262	3300009143	Vadose Zone Soil	VSGTVSRGGEAGQRGVAAEAGGSRRRGGWVALGVVVVVAAGPVAAWRAGVFSPAASSGAGQQ
Ga0105248_110495242	3300009177	Switchgrass Rhizosphere	VSKTVSRGREAGQQAEVLAAGEVRGSRGRRRWAALGIVAVVAAGVVSAWRIGAFSPA
Ga0116214_11169132	3300009520	Peatlands Soil	MSGTVSRGREAGRQAEVLAADEARGSRGRGRWVALGIVVV
Ga0105249_123190641	3300009553	Switchgrass Rhizosphere	VSKTVSRGREAGQQAEVLAAGEVRGSRGRRRWAALGIVAVVAAGVVSAWRVGA
Ga0126374_114027451	3300009792	Tropical Forest Soil	VSKTISRGREAGQQADVPAAAEAPGPRGRRWVALGIVAVVAAG
Ga0126373_123353481	3300010048	Tropical Forest Soil	MSRTVSRGREAGQQAEDLGAEVRGSRARGRWVALGLVVVLAAGAVWAWRAG
Ga0134080_106659842	3300010333	Grasslands Soil	VSETVSRGREARQQAEVPMAGETRGSRGRRRWVVLGVVVVVAAGAVSAWRTGVFSPAASS
Ga0126370_114637881	3300010358	Tropical Forest Soil	MSGTVARGREAGDQAGAPAAEEARGSRGRGRWVAAGIVIVVAAGVVLAWLA
Ga0126370_123970221	3300010358	Tropical Forest Soil	VSGAVSRRQAAGRQAEALAAEGATGSRGRSQGRWVVL
Ga0126372_119803102	3300010360	Tropical Forest Soil	VSETVSRGREAGQQADVLPAVEARGSRGRRRWVALGIVAVVAA
Ga0126378_123532142	3300010361	Tropical Forest Soil	MSRTVSRGREARQQAEDLAAEVRGSSARGRWVALGLVVVLA
Ga0126381_1002390151	3300010376	Tropical Forest Soil	VSETVSHGREAGQQAGVLAVAEARGSRRRPGGWVALGMAVVVVAGVVGA
Ga0126381_1010890361	3300010376	Tropical Forest Soil	VSGSFSRRRAAGRQAEALAAAGASGSRGRRRGRWVALGIVV
Ga0126381_1047524162	3300010376	Tropical Forest Soil	VSETVSRGREAEQQDVELAAAGARRAGARGRWIGLGIVLLTA
Ga0126350_113925191	3300010880	Boreal Forest Soil	VSETVSAGREAGQQAEALAAGAARGSHRRGGWVAAGLV
Ga0126350_121486591	3300010880	Boreal Forest Soil	MSETVSRGREAGSQAEVLAAAQARGRRGRGRWVALGIVVVVAAAAVS
Ga0137393_109030891	3300011271	Vadose Zone Soil	MSGTVSRGREAGQQAEVLAAAEARGSRGRRRWAALGIVAVVAAGAVSAWR
Ga0137362_101662553	3300012205	Vadose Zone Soil	MSGTVSRGREAGQQAEAQAAAEARGSRGHHRRGGWAAVGLVALAAA
Ga0137379_109742282	3300012209	Vadose Zone Soil	MSGTVSRGREAGQQAEALADSGARGSRGRWVALGIVVVVA
Ga0137379_113423432	3300012209	Vadose Zone Soil	VSETVSRGREAGRQAEAEPAGQARGSRGRRRGGWV
Ga0137378_113366661	3300012210	Vadose Zone Soil	MSGTVSRGQEAGRQAEVLAAAGARGSRGRGRWVALGIVVVVAAGAVSAWRAGAF
Ga0137377_102680271	3300012211	Vadose Zone Soil	VSETVSRGREAGQQAGALAAAQARASHRRRRGGWVAAGIVVVLAAGA
Ga0137390_119360172	3300012363	Vadose Zone Soil	VSGAVPRGREDGRQAEALADLEARGSRGRVRWVALGIAVVVAAGAV
Ga0157340_10298671	3300012473	Arabidopsis Rhizosphere	VSKTVSRGQEAGQQAEVLAAGEVRGSRGRRRWAALGIVAVVAAGVVSAWRVGA
Ga0137395_107648461	3300012917	Vadose Zone Soil	VSETVSRGREAGLQAEAEPAGEAKGSRGRRWGGWVAAGLVVVLAAGAVLAWRAGVFSAAASPG
Ga0137395_109558221	3300012917	Vadose Zone Soil	VSGTVPRGREAGRQAEALADSEALADSEARGSRGRVRWVALGIA
Ga0137419_115363693	3300012925	Vadose Zone Soil	MSGTVSRGREAGQQGEAQAAAEARGSRGHHRWGGWAAVGLVALAA
Ga0137407_100091021	3300012930	Vadose Zone Soil	MSGTVSRGREAGQQGEAQAAAEARGSRGHHRWGGWAA
Ga0157369_107465531	3300013105	Corn Rhizosphere	VSKTVSRGREAGQQAEVLAAGEVRGSRGRRRWAAL
Ga0157372_117690261	3300013307	Corn Rhizosphere	VSKTVSRGREAGQQAEVLAAGEVRGSRGRRRWAALGIVAVVAA
Ga0163163_130105142	3300014325	Switchgrass Rhizosphere	VSKTVSRGREAGQQAEVLAAGEVRGSRGRRRWAALGIVAVVAAGVVSAWRVGAFSPAA
Ga0182024_113441171	3300014501	Permafrost	MSGTVSRGREAGQQEAGQQAEARGSRGRGRWVALGIAAVVA
Ga0137412_108373981	3300015242	Vadose Zone Soil	VGETVSRGREAGQRAEVLAAAEARGSRGRVRWAALGIVAVVAAGAVA
Ga0182039_117316992	3300016422	Soil	VSETVPRDREAGPQAEVLAAEGKPRPGGRGRWVAVGVAVVVAAGVLSAWRAGVFSTAA
Ga0187812_11558381	3300017821	Freshwater Sediment	VSETVWRGREAGQRAEVLAAAGAPGSRGRGRWVALGI
Ga0187823_101787001	3300017993	Freshwater Sediment	VSGTVSRGPETGQRAEVLAAAGARGSRGRGRWVALGIVVLVAAGVVSA
Ga0187815_103617301	3300018001	Freshwater Sediment	VSGTVSRGPETGQRAEVLAAAGARGSRGRGRWVALGIVVVVAAG
Ga0187805_104964372	3300018007	Freshwater Sediment	MSNTGPGGPEAGQQARAVAAQEARASRAHGRWVTLGLVVVVAAGAVSAWQARVFS
Ga0187788_105024232	3300018032	Tropical Peatland	VSKTVSRGREAGQQAEVLAAGEVTGSRGRRRWAALGLVAVVAAGVVSAWRVG
Ga0193729_10517051	3300019887	Soil	VSETVPRGREAGQQAEVLAAAEARGSRGRGRWVALGIVVVVAAGAATAWRAG
Ga0210405_113972101	3300021171	Soil	MSGTVPRGRETGQQVEALPAMPPRGTRGRGRWVALGIVVVVAAGAVAGWRAGAFSPATSSGTGRQGA
Ga0210388_112630361	3300021181	Soil	VSETVSRGQEAGQQADALAPGRRTGHWRGRGRWVAAGIGVVLAAGVVAGWRA
Ga0210391_107666482	3300021433	Soil	VSETVSGGREAGQQAEDLAAGVARGSRRRGGWVAAALVMVLAAGGAAGAWRAGVFSPA
Ga0210402_114868212	3300021478	Soil	MSGTVPRGREAGRQTEALANSETKGSRGRVRWVALGIAVVVAAGAVAAWRAGAFSPAASP
Ga0126371_121007322	3300021560	Tropical Forest Soil	VSKTISRGRQAGQQADVPPAAAAEARGPHGRRRWVAVGIVIVVAA
Ga0126371_135595012	3300021560	Tropical Forest Soil	MRDTISPGRETAQQAEVLAAAGARGSRGRRRWVALGLVVVAAAGA
Ga0212123_102289361	3300022557	Iron-Sulfur Acid Spring	VSETVSRGREAGWQAEAQAAGEARGSRGRRRGGWVAAGLVVVLAAG
Ga0212123_104496041	3300022557	Iron-Sulfur Acid Spring	VSGTVSRGREAGWQAEAQAAGEASGSRGRRRGGWVAAGLVVVLA
Ga0179589_105714792	3300024288	Vadose Zone Soil	MSGTVPRGREAGQQAEAQAAAEARGSRGHGRRGGW
Ga0208220_10096574	3300025627	Arctic Peat Soil	VSETVSRGREAGQRAETLAAAEARGSRGRGRWIALGIVVVVAAGAVSAWRVFSPDASSG
Ga0207687_103404773	3300025927	Miscanthus Rhizosphere	VSKTVTRGREAGQQAEVLAAGEVRGSRGRRRWAALGIVAVVAAGVVSAWRVGAFSPAASSGA
Ga0207711_113661161	3300025941	Switchgrass Rhizosphere	VSKTVTRGREAGQQAEVLAAGEVRGSRGRRRWAALGIVAVVAAGVVSAWRIGAFSPA
Ga0209266_11200761	3300026327	Soil	VSKTGSRGREAGQQAEVLAAGEVRGSRGRRRWAALGIVAVVAAGVVSA
Ga0257156_11007371	3300026498	Soil	MSGTVSRGREAGPHAEALAAAQPRGPRGRGRWVAAGLVVVLAAG
Ga0257161_10072921	3300026508	Soil	MSGTVSRGREAGQQAEALAAAEARGSRGRGRWVALGIVVVVAAGA
Ga0257161_11002372	3300026508	Soil	VSETVSRGREAGRQAEAQAAGEARGSRGRRRGGWAAAGLGVVLAAGVVSAWRTGVFSPAATSGSGQQ
Ga0209648_100491595	3300026551	Grasslands Soil	VSETVSRGREAGQQAEVLAAAEARGSRGRRRWAALGIVAV
Ga0209420_10367181	3300027648	Forest Soil	MDSERDGFARPGGRATGGALAAAETRGSRGLRCWVALGIVFVVAAGAV
Ga0208991_11081273	3300027681	Forest Soil	MSGTVSRGREAGQQAEALAAAEAKGSRGRGRWVALGIVVVVVAAGAVSAW
Ga0209328_102041541	3300027727	Forest Soil	MSGTVSRGREAGQQAEALAVAGARVSRGRRRGGWVAL
Ga0208989_101194851	3300027738	Forest Soil	VSETVSRGREAGRQAEAQAAWEARGSRGRRRGGWVTAGLGV
Ga0209624_102873301	3300027895	Forest Soil	VGETVPRDREVGHQAEVLAAAETRGSRGRRRWAALGIVAVVAAGAVSAWR
Ga0209415_104436711	3300027905	Peatlands Soil	MSGTVSRGREAGQQAEALAAAEARGSRGRGRWVALGIVVVLAAGAVSAWRAGV
Ga0209006_108717552	3300027908	Forest Soil	MDSETFSRGREARRQADALTAAGAPGPRSRGRWVALGIVVVLAAGAVSAWRAG
Ga0307305_100370991	3300028807	Soil	LRKRKGRRWIVSKTVSRRREAGQQAEVLAAGEVRGSRGRRRWAALGIVAVVAAGVVSAWRAG
Ga0307312_103547312	3300028828	Soil	VSKTVSRGREAGQQAEVLAAGEVRGSRGRRRWAALGIVAVVA
Ga0307312_105449222	3300028828	Soil	VSETVSRGREAGRQAEAQPAGEARESRGRRRGGWVAAAMV
Ga0307308_105313821	3300028884	Soil	VSETVSRGREAGRQAEAQPAGEARESRGRRQGGWVAAAMVVVL
Ga0318538_100849901	3300031546	Soil	MVSRGREAGQHAEVLAAAEARGSRGRRRWVALGIVAVVA
Ga0318571_104249581	3300031549	Soil	VSGVVSRRRAAGRQAEALAAAGATGSRGRRRGRWVALGIVAV
Ga0318555_105220781	3300031640	Soil	MVSRGREAGQHAEVLAAAEPRGSRGRRRWVALGIVAVVAA
Ga0318574_101685633	3300031680	Soil	MRDTVSPGREAAQQAEVFAAAGARGSRGRRRWVALGLVVVAAAGALSAWRAG
Ga0318572_100743684	3300031681	Soil	MVSRGREAGQHAEVLAAAEARGSRGRRRWVALGIV
Ga0318493_100851274	3300031723	Soil	VSEMVSRGREAGQHAEVLAAAEARGSRGRRRWVALG
Ga0306918_109382051	3300031744	Soil	VSETVSRGREAGQRVEVPVAAGARGSRGRSRWVALGIVVLVAAGVISAWR
Ga0318502_100952984	3300031747	Soil	VCEMVSRGREAGQHAEVLAAAEARGSRGRRRWVALGLVVVAAAGALSAWRAGVFSPTAS
Ga0318492_100260115	3300031748	Soil	MVSRGREAGQHAEVLAAAEPRGSRGRRRWVALGIVAVVAAG
Ga0318494_107342241	3300031751	Soil	VSGTVPRGREAGQQAHAPAAAGARGPRGHGRWVAL
Ga0307477_105730632	3300031753	Hardwood Forest Soil	VSETVSRGREAGRQADALAAAGVGVAGGRRRRGGWAAACLVVVLAAGAVWAWRAGM
Ga0318554_104015031	3300031765	Soil	VSETVSRGQEAGQQAEGRAAAMPTRPRGRGRWVALGIAVVVAAGAVTAWRAGAFSPVAS
Ga0318509_106225431	3300031768	Soil	VSETVSRGREAGQRAEVPVAAGARGSRGRSRWVALGIVVLVAAGVISAWRAGIFSPAAS
Ga0318546_101518943	3300031771	Soil	VSEMVSRGREAGQHAEVLAAAEARGSRGRRRWVALGIM
Ga0318498_103057872	3300031778	Soil	MSGPVSHQVAGQPAEALAAAGASGSRGRRRGRWVALGIVVVAGGVSAWWAGV
Ga0318547_101081371	3300031781	Soil	MVSRGREAGQHAEVLAAAEARGSRGRRRWVALGIVAVVAAGE
Ga0318552_102670062	3300031782	Soil	MSGPVSHQVAGQPAEALAAAGASGSRGRRRGRWVALGIVVVAGGVSAWWAGVFA
Ga0318497_100542311	3300031805	Soil	VSEMVSRGREAGQHAEVLAAAEPRGSRGRRRWVALG
Ga0318567_104934772	3300031821	Soil	VSETVSRGREAGQRVEVPVAAGARGSRGRSRWVALGIVVLVAAGVISAWRAGIFSPAASCGTGPLGAPPP
Ga0307478_105095522	3300031823	Hardwood Forest Soil	MSGTVSRGREAGQQAEVLAAAEARGSRGRGRWVALGIVVVVAVGAVAG
Ga0318499_100420581	3300031832	Soil	MVSRGREAGQHAEVLAAAEARGSRGRRRWVALGIVAVVAAGAV
Ga0318499_101347801	3300031832	Soil	VSETVSRGQEAGQQAEGRAAAMPTRPRGRGRWVALG
Ga0318517_100507464	3300031835	Soil	MVSRGREAGQHAEVLAAAEARGSRGRRRWVALGLVVVAAAGALSAWRAGVFS
Ga0318551_105408762	3300031896	Soil	MRDTVSPGREAAQQAEVFAAAGARGSRGRRRWVALGLVVVAAAGALSAWQAGVFS
Ga0318551_106779971	3300031896	Soil	MSGPVSHQVAGQPAEALAAAGASGSRGRRRGRWVALGIVVVAGGVSAWWAGVFAPAAS
Ga0318520_107671051	3300031897	Soil	VSETVSRGREAGQRVEVPVAAGARGSRGRSRWVAMGIVVLVAAGVISAWRAGIFSP
Ga0306921_124715012	3300031912	Soil	VSETVSRGREAGQRAEVPVAAGARGSRGRGRWVALGIVVLVAAGVISAWRAGIFSPA
Ga0318562_102294093	3300032008	Soil	MSGPVSHQVAGQPAEALAAAGASGSRGRRRGRWVALGIVVVAGG
Ga0318507_102835301	3300032025	Soil	VSETVSRGQEAGQQAEGRAAATPTRPRGRGRWVALGIAVVV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F072219

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences