Metagenome Family F072221

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F072221
Family Type	Metagenome
Number of Sequences	121
Average Sequence Length	45 residues
Representative Sequence	MSVAPPGGQDRIMIYGPKSDGTYIIEFRMADGESLAISVPAGET
Number of Associated Samples	87
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	93.52 %
% of genes near scaffold ends (potentially truncated)	78.51 %
% of genes from short scaffolds (< 2000 bps)	82.64 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.60

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (79.339 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (37.190 % of family members)
Environment Ontology (ENVO)	Unclassified (54.545 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.719 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 26.39% Coil/Unstructured: 73.61%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.60
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.60
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF01068	DNA_ligase_A_M	25.62
PF00805	Pentapeptide	2.48
PF08308	PEGA	2.48
PF04392	ABC_sub_bind	1.65
PF02668	TauD	1.65
PF00106	adh_short	0.83
PF08240	ADH_N	0.83
PF03544	TonB_C	0.83
PF00498	FHA	0.83
PF00893	Multi_Drug_Res	0.83
PF04519	Bactofilin	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	25.62
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	25.62
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	2.48
COG2175	Taurine dioxygenase, alpha-ketoglutarate-dependent	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.65
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.65
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.83
COG1664	Cytoskeletal protein CcmA, bactofilin family	Cytoskeleton [Z]	0.83
COG2076	Multidrug transporter EmrE and related cation transporters	Defense mechanisms [V]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	79.34 %
Unclassified	root	N/A	20.66 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	79.34 %
Unclassified	root	N/A	20.66 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	79.34 %
Unclassified	root	N/A	20.66 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	73.55 %
Unclassified	root	N/A	20.66 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	3.31 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	73.55 %
Unclassified	root	N/A	20.66 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	3.31 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	57.85 %
Unclassified	root	N/A	20.66 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7.44 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.31 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	57.85 %
Unclassified	root	N/A	20.66 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.31 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	57.85 %
Unclassified	root	N/A	20.66 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.31 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000580\|AF_2010_repII_A01DRAFT_1054713	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	612	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10002132	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5217	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1063350	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	654	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10121292	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	546	Open in IMG/M
3300000893\|AP72_2010_repI_A001DRAFT_1027004	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	912	Open in IMG/M
3300004479\|Ga0062595_100773537	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	786	Open in IMG/M
3300004633\|Ga0066395_10410903	Not Available	765	Open in IMG/M
3300005332\|Ga0066388_102189774	Not Available	997	Open in IMG/M
3300005332\|Ga0066388_103853532	Not Available	765	Open in IMG/M
3300005332\|Ga0066388_106005060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	613	Open in IMG/M
3300005332\|Ga0066388_106811331	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	575	Open in IMG/M
3300005332\|Ga0066388_106947307	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	570	Open in IMG/M
3300005332\|Ga0066388_107420509	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	550	Open in IMG/M
3300005332\|Ga0066388_107625699	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	542	Open in IMG/M
3300005332\|Ga0066388_107923999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	531	Open in IMG/M
3300005332\|Ga0066388_108731188	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	503	Open in IMG/M
3300005467\|Ga0070706_101233773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	686	Open in IMG/M
3300005552\|Ga0066701_10163498	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1347	Open in IMG/M
3300005557\|Ga0066704_10072919	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2214	Open in IMG/M
3300005575\|Ga0066702_10485263	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	754	Open in IMG/M
3300005713\|Ga0066905_100904790	Not Available	772	Open in IMG/M
3300005713\|Ga0066905_101843986	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300005764\|Ga0066903_102248609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1052	Open in IMG/M
3300005764\|Ga0066903_105403177	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	674	Open in IMG/M
3300005764\|Ga0066903_107971825	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	543	Open in IMG/M
3300005764\|Ga0066903_108555220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	521	Open in IMG/M
3300005764\|Ga0066903_108771273	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	514	Open in IMG/M
3300006755\|Ga0079222_10552616	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	862	Open in IMG/M
3300006852\|Ga0075433_10421917	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1176	Open in IMG/M
3300009792\|Ga0126374_11879076	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	503	Open in IMG/M
3300010043\|Ga0126380_11728819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	563	Open in IMG/M
3300010047\|Ga0126382_10305741	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1196	Open in IMG/M
3300010358\|Ga0126370_11073792	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	740	Open in IMG/M
3300010360\|Ga0126372_12004231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	625	Open in IMG/M
3300010361\|Ga0126378_13289185	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	514	Open in IMG/M
3300010366\|Ga0126379_11582796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	761	Open in IMG/M
3300010376\|Ga0126381_102951400	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	676	Open in IMG/M
3300010376\|Ga0126381_104642171	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	529	Open in IMG/M
3300010398\|Ga0126383_12579231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	592	Open in IMG/M
3300012960\|Ga0164301_11244886	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	600	Open in IMG/M
3300012971\|Ga0126369_11043946	All Organisms → cellular organisms → Bacteria	906	Open in IMG/M
3300012971\|Ga0126369_11311276	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	814	Open in IMG/M
3300015245\|Ga0137409_10522371	All Organisms → cellular organisms → Bacteria	1012	Open in IMG/M
3300015374\|Ga0132255_103389882	Not Available	679	Open in IMG/M
3300016319\|Ga0182033_10563001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	986	Open in IMG/M
3300016319\|Ga0182033_11774436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	560	Open in IMG/M
3300016357\|Ga0182032_11548392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	576	Open in IMG/M
3300016371\|Ga0182034_10621575	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	913	Open in IMG/M
3300016371\|Ga0182034_10769604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	822	Open in IMG/M
3300016387\|Ga0182040_10428822	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1043	Open in IMG/M
3300016422\|Ga0182039_11399141	Not Available	635	Open in IMG/M
3300016445\|Ga0182038_10226048	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1490	Open in IMG/M
3300021086\|Ga0179596_10417592	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	678	Open in IMG/M
3300021444\|Ga0213878_10171728	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	905	Open in IMG/M
3300031544\|Ga0318534_10016823	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3806	Open in IMG/M
3300031545\|Ga0318541_10361494	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	811	Open in IMG/M
3300031546\|Ga0318538_10422629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	721	Open in IMG/M
3300031573\|Ga0310915_10202110	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1389	Open in IMG/M
3300031679\|Ga0318561_10189499	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1114	Open in IMG/M
3300031681\|Ga0318572_10591231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	661	Open in IMG/M
3300031719\|Ga0306917_10868369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	706	Open in IMG/M
3300031723\|Ga0318493_10469165	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	693	Open in IMG/M
3300031724\|Ga0318500_10021199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2488	Open in IMG/M
3300031724\|Ga0318500_10105008	Not Available	1289	Open in IMG/M
3300031724\|Ga0318500_10376243	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	704	Open in IMG/M
3300031744\|Ga0306918_10608519	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	856	Open in IMG/M
3300031748\|Ga0318492_10709751	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	539	Open in IMG/M
3300031763\|Ga0318537_10383427	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	518	Open in IMG/M
3300031764\|Ga0318535_10343999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	667	Open in IMG/M
3300031770\|Ga0318521_10286440	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	967	Open in IMG/M
3300031777\|Ga0318543_10008519	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3493	Open in IMG/M
3300031821\|Ga0318567_10251771	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	992	Open in IMG/M
3300031833\|Ga0310917_10095768	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1903	Open in IMG/M
3300031833\|Ga0310917_10217948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1279	Open in IMG/M
3300031845\|Ga0318511_10358564	Not Available	664	Open in IMG/M
3300031846\|Ga0318512_10277121	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	831	Open in IMG/M
3300031860\|Ga0318495_10020121	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2856	Open in IMG/M
3300031879\|Ga0306919_10011072	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5092	Open in IMG/M
3300031890\|Ga0306925_10004388	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	12720	Open in IMG/M
3300031890\|Ga0306925_12249629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	505	Open in IMG/M
3300031893\|Ga0318536_10080521	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1614	Open in IMG/M
3300031897\|Ga0318520_10151581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1344	Open in IMG/M
3300031910\|Ga0306923_10921469	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	955	Open in IMG/M
3300031910\|Ga0306923_11677041	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	658	Open in IMG/M
3300031941\|Ga0310912_10701795	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	784	Open in IMG/M
3300031946\|Ga0310910_11085115	Not Available	624	Open in IMG/M
3300031947\|Ga0310909_11255618	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	597	Open in IMG/M
3300031947\|Ga0310909_11513420	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	534	Open in IMG/M
3300031954\|Ga0306926_10431047	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1625	Open in IMG/M
3300032009\|Ga0318563_10255095	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	948	Open in IMG/M
3300032009\|Ga0318563_10724437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	534	Open in IMG/M
3300032010\|Ga0318569_10221606	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	877	Open in IMG/M
3300032025\|Ga0318507_10052869	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1601	Open in IMG/M
3300032025\|Ga0318507_10210783	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	839	Open in IMG/M
3300032035\|Ga0310911_10250692	Not Available	1013	Open in IMG/M
3300032039\|Ga0318559_10061958	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1593	Open in IMG/M
3300032041\|Ga0318549_10357982	Not Available	657	Open in IMG/M
3300032043\|Ga0318556_10084743	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1587	Open in IMG/M
3300032051\|Ga0318532_10063221	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1282	Open in IMG/M
3300032063\|Ga0318504_10049429	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1760	Open in IMG/M
3300032063\|Ga0318504_10418201	Not Available	639	Open in IMG/M
3300032064\|Ga0318510_10202806	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	802	Open in IMG/M
3300032066\|Ga0318514_10353796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	778	Open in IMG/M
3300032180\|Ga0307471_100519003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1342	Open in IMG/M
3300032180\|Ga0307471_100744115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1146	Open in IMG/M
3300032261\|Ga0306920_104326184	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	510	Open in IMG/M
3300033289\|Ga0310914_11054838	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	713	Open in IMG/M
3300033289\|Ga0310914_11270833	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	638	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.35%
Host-Associated	Host-Associated	1.65%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	98.35%
Plants	Host-Associated → Plants	1.65%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	98.35%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	79.34%
Loam	Environmental → Terrestrial → Soil → Loam	19.01%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	60.33%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	16.53%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.88%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.48%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.48%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	37.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.36%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	16.53%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	10.74%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	4.13%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.48%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.48%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.83%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.83%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300000893	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A001	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021444	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A01DRAFT_10547132	3300000580	Forest Soil	MSVAPPGGQDRIMIYGPKSDGTYIIEFRMADGESLAISVPAGETHVLKH
AF_2010_repII_A1DRAFT_100021324	3300000597	Forest Soil	MSPAAGGKNRIMIYGPKPDGTYVVEFKTADEALAISIDS*
AF_2010_repII_A100DRAFT_10633502	3300000655	Forest Soil	MSVAPPGGQDRIMIYGPKSDGTYIIEFRMADGESLAISVPAGETRVLKHFQ
AF_2010_repII_A001DRAFT_101212921	3300000793	Forest Soil	MSVAPESGRNRIMIYGPKSDGTYIIEFRMAEGESLAISVPAG
AP72_2010_repI_A001DRAFT_10270042	3300000893	Forest Soil	MSVAPPSGQNRIMIYGPKPDGTYIVEFRIANGEALAISVPTGRIVSATIG*
Ga0062595_1007735371	3300004479	Soil	MSVAPPEGGRNRIMIYGPKPDGTYIVEFKTADGEALAISVPAGET
Ga0066395_104109032	3300004633	Tropical Forest Soil	MSVAPESGRNRIMIYGPKPNGTYEVEFQTAGGESLTINVPAARPAC*
Ga0066388_1021897741	3300005332	Tropical Forest Soil	MSVAPESGRNRIMIYGPKPDGTYVVEFETADGDSLAISVPAGE
Ga0066388_1038535321	3300005332	Tropical Forest Soil	LAMSVAPPEGGRNRIMIYGPKRDGTYIVEFKTADGEALAMSVPSTN*
Ga0066388_1060050601	3300005332	Tropical Forest Soil	MSVAPEGGRNRIMIYGPKHDGTYIIEFRMADGESLAISVPAGETRVGLLDCPR*
Ga0066388_1068113311	3300005332	Tropical Forest Soil	MSIAPPGGQDRIMIYGPKSDGTYIIEFRMADGESLAISVPAGET
Ga0066388_1069473071	3300005332	Tropical Forest Soil	MSVAPENGRNRIMIYGPKSDGTYVVEFKTADGEALAISVPVG
Ga0066388_1074205092	3300005332	Tropical Forest Soil	MSIAPPGGQGRIMIYGPKSDGTYIIEFRMADGESLAISVPAGETRVLKH
Ga0066388_1076256991	3300005332	Tropical Forest Soil	MRVAPSVGQDRIMIYGPKTDGTYIIEFRMADGESLAISVPAGETRVL
Ga0066388_1079239991	3300005332	Tropical Forest Soil	MGVLAMSVAPPEGGRNRIMIYGPKRDGTYIVEFKTADGEAL
Ga0066388_1087311881	3300005332	Tropical Forest Soil	MSVAPPGGQDRIMIYGPKSDGTYIIEFRMADGESLAISVPAGETRVL
Ga0070706_1012337731	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MTSVAPPEGGRNRIMSYGPKPDGTYIVEFKTADGEALAISVPAGETPVLKYF
Ga0070697_1001244233	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MSVAPPSDQNRIMIYGPKNDGTYIVEFRTVDGEALAISVTASETRVLKHFQ
Ga0066701_101634981	3300005552	Soil	MSVAPPEGGRNRIMIYGPKPDDTYIFEFKTADGEALAISVLLERLAC*
Ga0066704_100729195	3300005557	Soil	MSVAPPEGGRNRIMIYGPKPDGTYIVEFKTADGEALAISVPAGETP
Ga0066702_104852631	3300005575	Soil	MSVAPPEGGRNRIMIYGPKPDGTYIVEFKTADGEALAISVPAGE
Ga0066905_1009047903	3300005713	Tropical Forest Soil	MSVAPPGGQDRIMIYGPKSDGTYIIEFRMADGESLAISVPAGETRV
Ga0066905_1017542182	3300005713	Tropical Forest Soil	LGKGALAMSVAPSSGHNRIMIYGPKPDGTYVVEFKMADGE
Ga0066905_1018439861	3300005713	Tropical Forest Soil	MSVAPPEGGRNRIMIYGPKRDGTYIVEFKTADGEALAMSVPSTN*
Ga0066903_1022486091	3300005764	Tropical Forest Soil	MSVAPESGRNRIMIYGPKPDGTYEIEFQTADGETLAISVPAG
Ga0066903_1044665182	3300005764	Tropical Forest Soil	MSVAPESGRNRILIYGPKGDGTYVIAFRMADGTKR*
Ga0066903_1054031772	3300005764	Tropical Forest Soil	MSVAPPGGQDRIMIYGPKSDGIYIMEFRIADGESLAISVPAGETRVLK*
Ga0066903_1079718251	3300005764	Tropical Forest Soil	MSIAPPGGQDRIMIYGPKSDGTYIIEFRMADGESLAISVPAG
Ga0066903_1085552202	3300005764	Tropical Forest Soil	MSIAPPGGQGRIMIYGPKSDGTYIIEFRMADGESLAISVP
Ga0066903_1087712731	3300005764	Tropical Forest Soil	MSVAPENGRNRIMIYGPRSDGTYIVEFKTADGEALAINVPVGETRV
Ga0079222_105526161	3300006755	Agricultural Soil	MSVAPPEGGRNRMMIYGPKPDGTHIVEFKTADGDALAISVPAGET
Ga0075433_104219173	3300006852	Populus Rhizosphere	MSVAPPEGGRNRIMIYGPKPDGTYIVEFKTTDGEALATSVPAGETRVLKYFQE
Ga0126374_118790763	3300009792	Tropical Forest Soil	MSVAPENGRNRIMIYGPKDDGRYIVEFKMADGEALAIN
Ga0126380_117288191	3300010043	Tropical Forest Soil	SVAPPRGQDRIMIYGPKSDGTYIIEFRMADGESLAQPPR*
Ga0126384_121079571	3300010046	Tropical Forest Soil	MSVAPESGRNRIMIYGPKSDGTYIIEFRMADDESLAISVPAGETRVLKHFQA
Ga0126382_103057411	3300010047	Tropical Forest Soil	MSVAPPGGQDRIMIYGPKTDGTYIIEFRMADGESLAISVPAGETRVLKHFQA
Ga0126370_110737922	3300010358	Tropical Forest Soil	MGVLVMSVAPPEGGQNRIMIYGPKPDGTYIVEFKTADGEALAIS
Ga0126372_120042312	3300010360	Tropical Forest Soil	MSVAPENGRNRIMIYGPKSDGTYIIEFRMADGESLAIS
Ga0126378_132891852	3300010361	Tropical Forest Soil	MSVAPESGRNRIMIYGPKNDGTYIVEFTTAAGEALA
Ga0126379_115827961	3300010366	Tropical Forest Soil	MSVVPESGRNRIMIYGPKNDGTYIVEFTTAAGEALAI
Ga0126381_1029514001	3300010376	Tropical Forest Soil	MSVAPEGGRNRIMIYGPKPDGTYFVEFKMADGEALAISVPASGTRVLKYFQE
Ga0126381_1046421711	3300010376	Tropical Forest Soil	MSVAPPEGGRNRIMIYGPKPDGEALAISVPASRRACSS
Ga0126383_125792311	3300010398	Tropical Forest Soil	MSVAPEGGGNRIMIYGPRNDGTYIVEFKTADGEALAINVPVGETR
Ga0124850_10636781	3300010863	Tropical Forest Soil	MSVAPPGGQDRIMIYGPKTDGTYIIEFRMADGETLAIS
Ga0137371_103676731	3300012356	Vadose Zone Soil	NRIMIYGPKNDGTYIIEFKMAAGEALAISVPAGETRVLKYRR*
Ga0164301_112448861	3300012960	Soil	MSVAPESGRNRIMIYGLKNDGTYVVEFMTADGEALAISVP
Ga0126369_110439461	3300012971	Tropical Forest Soil	LIKGAPEMSVAPSGGQDRIMIYGPNTDGTYIIEFRIADGESLAISVPAGETRVLKHF
Ga0126369_113112762	3300012971	Tropical Forest Soil	MSVAPESGRNRIMIYGPKSDGTYIIEFRMADGESLAISVPAG
Ga0137409_105223711	3300015245	Vadose Zone Soil	MGVLVMSVAPPEGGRNRIMIYGPKRDGTYIVEFKTADGEALAIS
Ga0132255_1033898821	3300015374	Arabidopsis Rhizosphere	MSIGPESGRNRIMIYGPKNDGTYVVEFKTADGESLAISVP
Ga0182033_105630013	3300016319	Soil	VDWSKGAPEMSVAPPGGQDRIMIYGPKSDGTYIIEFRMADGESLAIS
Ga0182033_117744362	3300016319	Soil	MSVAPPGGQDRIMIYGPKSDGTYIIEFRMADGESLAISVPAG
Ga0182032_115483921	3300016357	Soil	MSVAPPGGQDRIMIYGPKSDGTYIIEFRMADGESLAISVPAGETRVPKH
Ga0182034_106215752	3300016371	Soil	RTEMSVAPPGGQDRIMIYGPKSDGTYITEFRIADGESLAISVPAGETRVLKHF
Ga0182034_107696041	3300016371	Soil	MSVAPETGRNRIMIYGPKPDGTYVVEFETADGDSLAI
Ga0182040_104288221	3300016387	Soil	MSVAPESGRNRIMIYGPKSDGTYIIEFRMADGESLAINVPAGETRVLK
Ga0182039_113991412	3300016422	Soil	MSVAPPGGQDRIMIYGPKTDGTYIIEFRMADGESLAISVPAGETRV
Ga0182038_102260481	3300016445	Soil	MSVAPETGRNRIMIYGPKPDGTYVVEFETADGDSLAISVP
Ga0179596_104175922	3300021086	Vadose Zone Soil	MSVAPPEGGRNRIMIYGPKPDGTYIVEFKTADGEALAIGVP
Ga0213878_101717281	3300021444	Bulk Soil	MSVAPPGGQDRIMIYGPKSDGTYMIEFRMADGESLAISVPAGETPP
Ga0207700_112330392	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MSVAPENGRNRILIYGPKNDGTYIVEFRTADGEALAI
Ga0318534_100168236	3300031544	Soil	MSVAPPGGQDRIMIYDPKSDGTYITEFRIADGESLAISVPAGETRVLKHF
Ga0318541_103614943	3300031545	Soil	MSVAPPGGQDRIMIYGPKSDGTYITEFRIADGESLAISVPAGETRVLKH
Ga0318538_104226293	3300031546	Soil	MSVAPQTGRDRIMIYGPKPDGTYVVEFETADGDSLVV
Ga0318538_105359732	3300031546	Soil	MAVTAAGKNRIMIYGPKEDGTYVVEFKTAPGEALVRPRPSRVG
Ga0310915_102021104	3300031573	Soil	MSVAPESGRNRILIYGPKGDGTYVVEFKTAAGEALAISIPGGEARVI
Ga0318561_101894993	3300031679	Soil	MSVAPPGGQDRIMIYGPKSDGTYITEFRIADGESLAISVPAGETRVLKHF
Ga0318572_105912311	3300031681	Soil	MSVAPPNGQNRIMIYGPKSDGTYIIEFRMADGESLAISVPAGETRV
Ga0306917_108683691	3300031719	Soil	MIYGPKPDGTYIVEFRIANGEALAISVPTGETRVLKYFQE
Ga0306917_114091522	3300031719	Soil	MSVAPPGGQDRIMIYGPKTDGTYIIEFRMADGESLAIS
Ga0318493_104691652	3300031723	Soil	MSVAPPEGGQNRVMIYGPKPDGTYIVEFKTADGEALAI
Ga0318500_100211995	3300031724	Soil	APPGGQDRIMIYGPKSDGTYITEFRIADGESLAISVPAGETRVLKHF
Ga0318500_101050081	3300031724	Soil	MSVAPPGGQDRIMIYGPKSDGTYITEFRIADGESLAISVPAGE
Ga0318500_103762432	3300031724	Soil	MTGKNRIMIYGPKPDGTYIVEFRIANGEALAISVPAGET
Ga0306918_106085191	3300031744	Soil	MGEEGALAMSVAPESGRNRIMIYGPKSDGTYIIEFRMPDG
Ga0306918_113474921	3300031744	Soil	MIYGPKPDGTYGVEFKMADGEALAISVPAGETRVL
Ga0318492_107097511	3300031748	Soil	MSVAPSSGHNRIMIYLPKPNGTYVVEFKIADGEALAISVPASETRVLKYF
Ga0318537_103834272	3300031763	Soil	MSVAPPNGQNRIMIYGPKSDGTYIIEFRMADGESLAISVPAGETRVLKHFQ
Ga0318535_103439991	3300031764	Soil	MSVAPPGGQDRIMIYGPKSDGTYIIEFRMADGESLAISVPAGET
Ga0318521_102864402	3300031770	Soil	MSVAPQGGRNRIMIYGPKSDGTYVVEFKTADGEALSR
Ga0318543_100085191	3300031777	Soil	MSGAPESGRNRIMIYGPKGRWHVRCRVQDGRSLAISVPVGETRVLKH
Ga0318498_103819332	3300031778	Soil	MSVAPPGGQDRIMIYGPKTDGTYIIEFRMADGESLAISVPAGETR
Ga0318567_102517711	3300031821	Soil	MSVAPPGGQDRIMIYGPKSDGTYIIEFRMADGESLAISVPA
Ga0310917_100957681	3300031833	Soil	MSVAPETGRNRIMIYGPKPDGTYVVEFETADGDSLAISVPASE
Ga0310917_102179483	3300031833	Soil	MSVAPQTGRDRIMIYGPKPDGTYVVEFETADGDSLAISVPAGETRVLKLFQ
Ga0318511_103585642	3300031845	Soil	MSVAPPGGQDRIMIYGPKSDGTYIIEFRMADGESLAISVPAGETRVLKHFQA
Ga0318512_102771211	3300031846	Soil	MSVAPPGGQDRIMIYGPKSDGTYITEFRIADGESLAISVPAGETRVLK
Ga0318495_100201214	3300031860	Soil	MSVAPPGGQDRIMIYDPKSDGTYITEFRIADGESLAISVPAGGTRVLKHF
Ga0306919_100110721	3300031879	Soil	MSVAPQTGRDRIMIYGPKPDGTYVVEFETADGDSPAISVPAGETRVLKHF
Ga0306925_1000438819	3300031890	Soil	MSVAPQTGRDRIMIYGPKPDGTYVVEFETADGDSLAISVPAGETR
Ga0306925_122496291	3300031890	Soil	VSVAPPGGQDRIMIYGPKSDGTYIIEFRMADGESLAISVPAGETRVLK
Ga0318536_100805211	3300031893	Soil	MSVAPPGGQDRIMIYGPKSDGTYIIEFRMADGESLAISVP
Ga0318520_101515812	3300031897	Soil	MSVAPESGRNRIMIYGPKNDGTYIVEFTTAAGDALAISV
Ga0306923_109214692	3300031910	Soil	MSVAPPGGQDRIMIYGPKTDGTYIIEFRMADGESLAISVPAGETRVLKHFQ
Ga0306923_116770412	3300031910	Soil	MSVAPPSGQNRIMIYGPKDDGTYVVEFRTADGEALAISVPANETRVC
Ga0306921_110569873	3300031912	Soil	MSVAPPGGQDRIMIYGPKSDGTYITEFRIADGESLAISVPAGETRVLKHFQARMPYGL
Ga0310912_107017951	3300031941	Soil	MSVAPESGRNRIMIYGPKNDGTYIVEFTTAAGEALAISVPAGETR
Ga0310910_110851152	3300031946	Soil	MSVAPPGGQDRIMIYGPKSDATYIIEFRMADGESLAISVP
Ga0310909_112556181	3300031947	Soil	MSVAPQTGRDRIMIYGPKPDGTYVVEFETADGDSPAIS
Ga0310909_115134202	3300031947	Soil	MSVAPDNGGRNRVMIFGPKPDGTYIVEFKTADGDSLAISVPAN
Ga0306926_104310473	3300031954	Soil	MSVAPPGGQDRIMIYGPKSDGTYIIEFRMADGESLA
Ga0318563_102550951	3300032009	Soil	MSVAPPGGQDRIMIYDPKSDGTYITEFRIADGESLAISVPAGGTRVLRHF
Ga0318563_107244372	3300032009	Soil	MSVAPPGGQDRIMIYGPKSDGTYIIEFRMADGESLAISVPAGETRPAG
Ga0318569_102216061	3300032010	Soil	MSVAPESGRNRIMIYGPKGDGTYVVEFKTADGEALAISVRV
Ga0318507_100528693	3300032025	Soil	MSVAPPGGQDRIMIYGPKSDGTYIIEFRMADGESLAISVPAGETRVLK
Ga0318507_102107831	3300032025	Soil	MSVAPPGGQDRIMIYGPKTDGTYIIEFRMADGESLAISVPAGETRVLKHFQVAC
Ga0310911_102506921	3300032035	Soil	MSVAPQGGRNRIMIYGPKSDGTYVVEFKTADGEALSRPIGTIA
Ga0318559_100619581	3300032039	Soil	MSVAPPGGQDRIMIYGPKSDGTYIIEFRMADGESLAISVPAGETRPAGPPGPAG
Ga0318549_103579822	3300032041	Soil	MSVAPPGGQDRIMIYGPKSDGTYIIEFRMADGESLAISVPAGETRVLKHFQAR
Ga0318556_100847431	3300032043	Soil	MSVAPESGRNRIMIYGPKGDGTYVVEFKTADGEALAISVPVGETRVLK
Ga0318532_100632211	3300032051	Soil	MSVAPPGGQDRIMIYGPKSDGTYITEFRIADGESLAISVPAGET
Ga0318504_100494291	3300032063	Soil	MSIAPPGGQDRIMIYGPKSDRTYIIEFRMADGESLAISVPAGETRVLKHF
Ga0318504_104182012	3300032063	Soil	MSVAPPGGQDRIMIYGPKSDGTYIIEFRMADGESRAI
Ga0318510_102028062	3300032064	Soil	MSVAPPGGQDRIMIYGPKTDGTYIIEFRMADGESLAISVPAGEARVLKHF
Ga0318514_103537962	3300032066	Soil	MSVAPPGGQDRIMIYGPKTDGTYIIELRMADGESLAISVPAGETRVLK
Ga0307471_1005190031	3300032180	Hardwood Forest Soil	MSVAPADGGRNRIMIYGPKDDGTYVVEFKTADGEALAISVP
Ga0307471_1007441152	3300032180	Hardwood Forest Soil	MSVAPPEGGRNRIMIYGPKSDGTYVVEFKTAEGEALAISVPAGETRVLK
Ga0306920_1035808652	3300032261	Soil	MSVAPPGGQDRIMIYGPKTDGTYIIEFRMADGESLAISVPA
Ga0306920_1043261841	3300032261	Soil	VSVAPPGGQDRIMIYGPKSDGTYIIEFRMADGESLAISV
Ga0310914_110548382	3300033289	Soil	VSVAPPGGQDRIMIYGPKSDGTYIIEFRMADGESLAISVPAGETRVLKHFQ
Ga0310914_112708333	3300033289	Soil	MSVAPQTGRDRIMIYGPKPDGTYVVEFETADGDSLAISVPAGETRVLKH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F072221

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences