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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F072359 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 121 |
| Average Sequence Length | 45 residues |
| Representative Sequence | LKTKDNYSDLTIEQIRSICTFGDVWYYDLTQKELIWGDWLINK |
| Number of Associated Samples | 105 |
| Number of Associated Scaffolds | 121 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 0.00 % |
| % of genes near scaffold ends (potentially truncated) | 100.00 % |
| % of genes from short scaffolds (< 2000 bps) | 94.21 % |
| Associated GOLD sequencing projects | 98 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.26 |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (76.033 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Aquatic → Marine → Strait → Unclassified → Seawater (28.926 % of family members) |
| Environment Ontology (ENVO) | Unclassified (64.463 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (87.603 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 22.54% β-sheet: 0.00% Coil/Unstructured: 77.46% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.26 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 121 Family Scaffolds |
|---|---|---|
| PF14743 | DNA_ligase_OB_2 | 1.65 |
| PF06356 | DUF1064 | 0.83 |
| PF01068 | DNA_ligase_A_M | 0.83 |
| COG ID | Name | Functional Category | % Frequency in 121 Family Scaffolds |
|---|---|---|---|
| COG1423 | ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family | Replication, recombination and repair [L] | 0.83 |
| COG1793 | ATP-dependent DNA ligase | Replication, recombination and repair [L] | 0.83 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 76.03 % |
| All Organisms | root | All Organisms | 23.97 % |
| Visualization |
|---|
| Powered by ApexCharts |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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| Habitat | Taxonomy | Distribution |
| Seawater | Environmental → Aquatic → Marine → Strait → Unclassified → Seawater | 28.93% |
| Seawater | Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater | 14.05% |
| Aqueous | Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous | 13.22% |
| Marine | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine | 11.57% |
| Marine | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine | 4.13% |
| Seawater | Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater | 3.31% |
| Marine Sediment | Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment | 3.31% |
| Estuarine | Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine | 3.31% |
| Pelagic Marine | Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine | 3.31% |
| Seawater | Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater | 2.48% |
| Seawater | Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater | 1.65% |
| Salt Marsh | Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh | 1.65% |
| Pelagic Marine | Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine | 1.65% |
| Marine Water | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Water | 0.83% |
| Deep Subsurface | Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface | 0.83% |
| Marine | Environmental → Aquatic → Marine → Coastal → Sediment → Marine | 0.83% |
| Microbial Mat | Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat | 0.83% |
| Worm Burrow | Environmental → Aquatic → Marine → Coastal → Sediment → Worm Burrow | 0.83% |
| Marine | Environmental → Aquatic → Marine → Coastal → Unclassified → Marine | 0.83% |
| Estuary Water | Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water | 0.83% |
| Sea-Ice Brine | Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine | 0.83% |
| Deep Subsurface | Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface | 0.83% |
| Visualization |
|---|
| Powered by ApexCharts |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300001472 | Marine viral communities from the Pacific Ocean - LP-32 | Environmental | Open in IMG/M |
| 3300005057 | Marine water microbial communities from the East Sea, Korea with extracellular vesicles - East-Sea-0.2um | Environmental | Open in IMG/M |
| 3300005404 | Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV205 | Environmental | Open in IMG/M |
| 3300006467 | Coastal sediment microbial communities from Rhode Island, USA: Combined Assembly of Gp0121717, Gp0123912, Gp0123935 | Environmental | Open in IMG/M |
| 3300006737 | Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG | Environmental | Open in IMG/M |
| 3300006790 | Marine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaG | Environmental | Open in IMG/M |
| 3300006802 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 | Environmental | Open in IMG/M |
| 3300006916 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 | Environmental | Open in IMG/M |
| 3300006922 | Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG | Environmental | Open in IMG/M |
| 3300006928 | Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG | Environmental | Open in IMG/M |
| 3300007345 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 | Environmental | Open in IMG/M |
| 3300007540 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG | Environmental | Open in IMG/M |
| 3300007622 | Estuarine microbial communities from the Columbia River estuary - metaG 1449A-02 | Environmental | Open in IMG/M |
| 3300007639 | Estuarine microbial communities from the Columbia River estuary - metaG 1449C-02 | Environmental | Open in IMG/M |
| 3300007972 | Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460ABC_3.0um | Environmental | Open in IMG/M |
| 3300008012 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_DNA | Environmental | Open in IMG/M |
| 3300009003 | Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.725 | Environmental | Open in IMG/M |
| 3300009080 | Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.759 | Environmental | Open in IMG/M |
| 3300009193 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_110321 | Environmental | Open in IMG/M |
| 3300009481 | Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG | Environmental | Open in IMG/M |
| 3300009496 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_120524 | Environmental | Open in IMG/M |
| 3300009505 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_110523 | Environmental | Open in IMG/M |
| 3300009550 | Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome | Environmental | Open in IMG/M |
| 3300009608 | Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_2Apr14_M1_3um Metatranscriptome (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300010430 | Marine sediment microbial communities from Gulf of Thailand under amendment with organic carbon and nitrate - JGI co-assembly of 8 samples | Environmental | Open in IMG/M |
| 3300011118 | Deep subsurface microbial communities from Aarhus Bay to uncover new lineages of life (NeLLi) - Aarhus_00045 metaG | Environmental | Open in IMG/M |
| 3300011253 | Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, permeate | Environmental | Open in IMG/M |
| 3300012952 | Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 Metagenome | Environmental | Open in IMG/M |
| 3300012953 | Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome | Environmental | Open in IMG/M |
| 3300017719 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21 | Environmental | Open in IMG/M |
| 3300017724 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 11 SPOT_SRF_2010-05-17 | Environmental | Open in IMG/M |
| 3300017727 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 24 SPOT_SRF_2011-07-20 | Environmental | Open in IMG/M |
| 3300017728 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 42 SPOT_SRF_2013-04-24 | Environmental | Open in IMG/M |
| 3300017731 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 39 SPOT_SRF_2013-01-16 | Environmental | Open in IMG/M |
| 3300017734 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 4 SPOT_SRF_2009-09-24 (version 2) | Environmental | Open in IMG/M |
| 3300017738 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 51 SPOT_SRF_2014-02-12 | Environmental | Open in IMG/M |
| 3300017741 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 44 SPOT_SRF_2013-06-19 | Environmental | Open in IMG/M |
| 3300017743 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 25 SPOT_SRF_2011-08-17 | Environmental | Open in IMG/M |
| 3300017745 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 50 SPOT_SRF_2014-01-15 | Environmental | Open in IMG/M |
| 3300017746 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 12 SPOT_SRF_2010-06-29 | Environmental | Open in IMG/M |
| 3300017751 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21 (version 2) | Environmental | Open in IMG/M |
| 3300017752 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 23 SPOT_SRF_2011-06-22 | Environmental | Open in IMG/M |
| 3300017753 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 30 SPOT_SRF_2012-01-26 | Environmental | Open in IMG/M |
| 3300017755 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 34 SPOT_SRF_2012-07-09 | Environmental | Open in IMG/M |
| 3300017758 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 32 SPOT_SRF_2012-05-30 | Environmental | Open in IMG/M |
| 3300017759 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 37 SPOT_SRF_2012-11-28 | Environmental | Open in IMG/M |
| 3300017760 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 31 SPOT_SRF_2012-02-16 | Environmental | Open in IMG/M |
| 3300017762 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 45 SPOT_SRF_2013-07-18 | Environmental | Open in IMG/M |
| 3300017767 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 29 SPOT_SRF_2011-12-20 | Environmental | Open in IMG/M |
| 3300017770 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15 (version 2) | Environmental | Open in IMG/M |
| 3300017771 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 48 SPOT_SRF_2013-11-13 | Environmental | Open in IMG/M |
| 3300017772 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 53 SPOT_SRF_2014-04-10 | Environmental | Open in IMG/M |
| 3300017773 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 9 SPOT_SRF_2010-03-24 | Environmental | Open in IMG/M |
| 3300017776 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 17 SPOT_SRF_2010-11-23 | Environmental | Open in IMG/M |
| 3300017779 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 18 SPOT_SRF_2010-12-16 | Environmental | Open in IMG/M |
| 3300018428 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101404AT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300020352 | Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556084-ERR599144) | Environmental | Open in IMG/M |
| 3300020377 | Marine microbial communities from Tara Oceans - TARA_B100000927 (ERX556007-ERR599065) | Environmental | Open in IMG/M |
| 3300020379 | Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556001-ERR599168) | Environmental | Open in IMG/M |
| 3300020457 | Marine microbial communities from Tara Oceans - TARA_B100001113 (ERX555941-ERR599014) | Environmental | Open in IMG/M |
| 3300021169 | Metatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300021185 | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015 | Environmental | Open in IMG/M |
| 3300021350 | Metatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300021373 | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282 | Environmental | Open in IMG/M |
| 3300022068 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (v2) | Environmental | Open in IMG/M |
| 3300022158 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v3) | Environmental | Open in IMG/M |
| 3300022169 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v3) | Environmental | Open in IMG/M |
| 3300022183 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v3) | Environmental | Open in IMG/M |
| 3300022929 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG | Environmental | Open in IMG/M |
| 3300022938 (restricted) | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_13_MG | Environmental | Open in IMG/M |
| 3300023554 | Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 71R (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300023696 | Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 52R (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300023698 | Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 27R (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300024052 (restricted) | Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_5 | Environmental | Open in IMG/M |
| 3300024188 | Seawater microbial communities from Monterey Bay, California, United States - 2D | Environmental | Open in IMG/M |
| 3300024247 | Seawater microbial communities from Monterey Bay, California, United States - 36D_r | Environmental | Open in IMG/M |
| 3300024248 | Seawater microbial communities from Monterey Bay, California, United States - 48D_r | Environmental | Open in IMG/M |
| 3300024291 | Seawater microbial communities from Monterey Bay, California, United States - 74D | Environmental | Open in IMG/M |
| 3300024296 | Seawater microbial communities from Monterey Bay, California, United States - 36D | Environmental | Open in IMG/M |
| 3300024318 | Seawater microbial communities from Monterey Bay, California, United States - 46D | Environmental | Open in IMG/M |
| 3300024320 | Seawater microbial communities from Monterey Bay, California, United States - 38D | Environmental | Open in IMG/M |
| 3300024517 (restricted) | Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_3 | Environmental | Open in IMG/M |
| 3300024529 (restricted) | Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_21 | Environmental | Open in IMG/M |
| 3300025085 | Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025151 | Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes) | Environmental | Open in IMG/M |
| 3300025168 | Marine viral communities from the Pacific Ocean - LP-53 (SPAdes) | Environmental | Open in IMG/M |
| 3300025543 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025694 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_120426 (SPAdes) | Environmental | Open in IMG/M |
| 3300025769 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes) | Environmental | Open in IMG/M |
| 3300025889 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes) | Environmental | Open in IMG/M |
| 3300025892 | Pelagic Microbial community sample from North Sea - COGITO 998_met_01 (SPAdes) | Environmental | Open in IMG/M |
| 3300025895 | Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - COGITO 998_met_12 (SPAdes) | Environmental | Open in IMG/M |
| 3300026403 | Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 2R (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300026462 | Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 17R (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300026465 | Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 48R (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300027845 | Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd00.2 (SPAdes) | Environmental | Open in IMG/M |
| 3300027859 | Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome (SPAdes) | Environmental | Open in IMG/M |
| 3300027906 | Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes) | Environmental | Open in IMG/M |
| 3300028109 | Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 41R (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300028125 | Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SB | Environmental | Open in IMG/M |
| 3300028134 | Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - WCR_12 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300028418 | Seawater microbial communities from Monterey Bay, California, United States - 16D | Environmental | Open in IMG/M |
| 3300032088 | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 21515 | Environmental | Open in IMG/M |
| 3300032258 | Coastal sediment microbial communities from Maine, United States - Eddy worm burrow 2 cm | Environmental | Open in IMG/M |
| 3300032277 | Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotite | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
| ⦗Top⦘ |
Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
| Protein ID | Sample Taxon ID | Habitat | Sequence |
| JGI24004J15324_100736123 | 3300001472 | Marine | FDTLKQKNNYSDLTIDEIRSICTFGDVWYHDLTQSQIIWGEWLINK* |
| JGI24004J15324_101173472 | 3300001472 | Marine | VNWLFDTLKQKNNYSDLTIDEIRSICTFGDVWYHDLTQRDIIWGDWLTNK* |
| Ga0068511_10502672 | 3300005057 | Marine Water | FNTLKQKESYTELTIDEIRTICTFGDVWYFDLTQKDIIWGDWLTK* |
| Ga0066856_103590881 | 3300005404 | Marine | KYSYSQLTIDDIRGICTFGDVWYNDISQIDLMYGDWLINK* |
| Ga0099972_117749002 | 3300006467 | Marine | KSVNWLIDSLKEKYNYSELTIDELRSVCTFGDVWYYDLTQKELIWGDWLIKQ* |
| Ga0098037_11253173 | 3300006737 | Marine | VNWLFDKIKTKDHYSDLTIEEIRSICTFGDVWYYDLTQKELIWGDWLINK* |
| Ga0098074_11394861 | 3300006790 | Marine | AKIEKESKRYDSVNWLIDTIKTKDNYSDSTIDEIRSICTFGDVWYNDIPQLELMYGDWLIKQ* |
| Ga0070749_101927771 | 3300006802 | Aqueous | EYESVNWLFDKLKTKDNYSDLTIDQIRSICTFGDVWYHDLTQKDIIWGDWLINK* |
| Ga0070749_102339201 | 3300006802 | Aqueous | NYSDLTIDQIRSICTFGDVWYHDLTQKDIIWGDWLINK* |
| Ga0070749_103486243 | 3300006802 | Aqueous | DKLKNKDHYSDLTIEQIRSICTFGDVWYYDLTQKELIWGDWLIKQ* |
| Ga0070750_103708132 | 3300006916 | Aqueous | DLTIDQIRSICTFGDVWYHDLTQKDIIWGDWLINK* |
| Ga0098045_10142131 | 3300006922 | Marine | LKTKDNYSDLTIEQIRSICTFGDVWYYDLTQKELIWGDWLIKQ* |
| Ga0098041_12748611 | 3300006928 | Marine | KMIENSKQYESVNWLIDKLKNQRSYSQLTIDDVRGICTFGDVWYNDITQLELMYGDWLIKQ* |
| Ga0070752_13773742 | 3300007345 | Aqueous | KLKNKDHYSDLTIDEVRSICTFGDVFYHDLTQRDIIWGDWLINK* |
| Ga0099847_11431671 | 3300007540 | Aqueous | DNYSDLTIEQIRSICTFGDVWYYDLTQKDLIWGDWLIK* |
| Ga0102863_10033211 | 3300007622 | Estuarine | NKDNYSDLTIDEVRSICTFGDVFYHNLTQTDIIWGDWLINK* |
| Ga0102865_10703191 | 3300007639 | Estuarine | QKNNYSDLTIDEIRSICTFGDVWYHNLTQRDIIWGDWLINK* |
| Ga0105745_10533561 | 3300007972 | Estuary Water | LFDKLKNKDNYSDLTIDEVRSICTFGDVFYHNLTQTDIIWGDWLINK* |
| Ga0075480_105577231 | 3300008012 | Aqueous | KTKDNYSDLTIEQIRSICTFGDVWYYDLTQKELIWGDWLINK* |
| Ga0102813_11638561 | 3300009003 | Estuarine | DNYSELTIDDIRSLCTFGDVWYHDLTQSQIIWGEWLINK* |
| Ga0102815_106042111 | 3300009080 | Estuarine | NAKECPSVNWLLDKLKQKHSYSDLTIDQIRSICTFGDVFYHDLTQKDLIWGDWLTK* |
| Ga0115551_13321951 | 3300009193 | Pelagic Marine | KDHYSDLTIEQIRSICTFGDVWYYDLTQKELIWGDWLTK* |
| Ga0114932_106808871 | 3300009481 | Deep Subsurface | TKHRYSELTIDEIRSICTFGDIWYHDLTQGELIWGDWLINK* |
| Ga0115570_103717471 | 3300009496 | Pelagic Marine | EYKSVNWLLDKLKTKDNYSDLTIEQIRSICTFSDVFYYDLTQKELIWGDWLIKQ* |
| Ga0115564_101279064 | 3300009505 | Pelagic Marine | WLIDKLKNKNNYSDLTIDELRSVCTFGDVFYHDLTQSQLIWGEWLINK* |
| Ga0115013_108284552 | 3300009550 | Marine | VFNTLKQKHSYSDLTIEEIRSICTFGDVWYYDLTQKELIWGEWLINK* |
| Ga0115100_101035921 | 3300009608 | Marine | KDNYSDLTIEQIRSICTFGDVWYYDLTQKELIWGDWLINK* |
| Ga0118733_1063098721 | 3300010430 | Marine Sediment | DNYSDLTIEQIRSICTFGDVWYYDLTQKELIWGDWLIKQ* |
| Ga0118733_1070662851 | 3300010430 | Marine Sediment | SDLTIEEIRSICTFGDVFYHDLTQKDLIWGDWLTK* |
| Ga0118733_1078507091 | 3300010430 | Marine Sediment | QKDYYSDLTIEEIRSICTFGDVFYHDLTQKDLIWGDWLTK* |
| Ga0114922_106482791 | 3300011118 | Deep Subsurface | NYSDLTIDELRSVCTFGDVFYHDLTQRDIIWGDWLIKQ* |
| Ga0151671_10289922 | 3300011253 | Marine | LKTKDNYSDLTIEEIRSICTFGDVWYYDLTQKELIWGEWLINK* |
| Ga0163180_110366672 | 3300012952 | Seawater | FDTIKTKHRYSELTIDEIRSICTFGDIWYHDLTQGELIWGDWLINK* |
| Ga0163179_105641163 | 3300012953 | Seawater | DLTIEEIRSICTFGDVWYYDLTQKELIWGDWLTK* |
| Ga0181390_11130371 | 3300017719 | Seawater | LKQKHSYSDLTIDEIRSICTFGDVWYHDLTQRDIIWGDWLTNK |
| Ga0181390_11298581 | 3300017719 | Seawater | EYKSINWLFDKLKQKDYYSDLTIEEIRYICTFGDVWYHDLTQRDIIWGDWLTK |
| Ga0181388_10933911 | 3300017724 | Seawater | NAKEYKSINWLFDKLKQKDYYSDLTIEEIRSICTFGDVWYHDLTQSQIIWGEWLINK |
| Ga0181401_10180031 | 3300017727 | Seawater | SVNWLIDNLKTKDNYSDLTIEQIRSICTFGDVWYYDLTQKELIWGDWLINK |
| Ga0181401_10941971 | 3300017727 | Seawater | LKQKDNYSDLTIEQIRSICTFGDVWYYDLTQKELIWGDWLTKQ |
| Ga0181419_10471311 | 3300017728 | Seawater | QKDNYSDLTIDDIRSLCTFGDVWYHDLTQSQIIWDEWLINK |
| Ga0181416_11017781 | 3300017731 | Seawater | DLTIDEIRSICTFGDVWYYDLTQKELIWGDWLINK |
| Ga0187222_11496841 | 3300017734 | Seawater | NAEEYKSVNWLIDELKTKDNYSDLTIEQIRSICTFGDVWYHDLTQSQIIWGEWLINK |
| Ga0181428_10868381 | 3300017738 | Seawater | DLTIEEIRSICTFGDVWYYDLTQKELIWGDWLTNK |
| Ga0181421_10249551 | 3300017741 | Seawater | SYSDLTIDEIRSICTFGDVWYHDLTQRDIIWGDWLTNK |
| Ga0181421_10744731 | 3300017741 | Seawater | YSDLTIEQIRSICTFGDVWYYDLTQKELIWGDWLTNKQIXTKKK |
| Ga0181421_11372371 | 3300017741 | Seawater | EYKTVNWLLDTLKQKHSYSDLTIDEIRSICTFGDVWYHDLTQRDIIWGDWLTNK |
| Ga0181402_10623341 | 3300017743 | Seawater | ENAKEYKSVNWLFDKLKQKDNYSDLTIDDIRSLCTFGDVWYHDLTQSQIIWGEWLINK |
| Ga0181427_10373714 | 3300017745 | Seawater | KTKDNYSDLTIEQIRSICTFGDVWYYDLTQRDIVWGDWLTNK |
| Ga0181389_10620011 | 3300017746 | Seawater | HNYSDLTIDEIRSICTFGDVWYHDLTQRDIIWGDWLTNK |
| Ga0181389_10657261 | 3300017746 | Seawater | NYSDLTIDEIRSICTFGDVWYHDLTQRDIIWGDWLTK |
| Ga0187219_11004901 | 3300017751 | Seawater | DYYSDLTIEEIRSICTFGDVFYHDLTQKDIIWGDWLTNK |
| Ga0181400_11132944 | 3300017752 | Seawater | SVNWLIDKLKTKDNYSDLTIEQIRSICTFGDVWYYDLTQKELIWGDWLINK |
| Ga0181407_11003191 | 3300017753 | Seawater | ELKTKDNYSDLTIEEIRSICTFGDVWYYDLTQKELIWGDWLIKQ |
| Ga0181411_11641812 | 3300017755 | Seawater | NLKTKDNYSDLTIEQIRSICTFGDVWYYDLTQKELIWGDWLINK |
| Ga0181409_10931444 | 3300017758 | Seawater | YSDLTIEEIRSICTFGDVWYHDLTQRDIIWGDWLTK |
| Ga0181409_11010671 | 3300017758 | Seawater | EYKSVNWLFDTLKQKDNYSDLTIEQIRSICTFGDVWYYDLTQKELIWGDWLIKQ |
| Ga0181414_11510213 | 3300017759 | Seawater | DLTIEQIRSICTFGDVWYYDLTQKELIWGDWLINK |
| Ga0181408_11458983 | 3300017760 | Seawater | EYKSINWLFDKLKQKDYYSDLTIEEIRSICTFGDVWYYDLTQKELIWGDWLIKQ |
| Ga0181422_10787151 | 3300017762 | Seawater | KQKDNYSDLTIDDIRSLCTFGDVWYHDLTQSQIIWGEWLINK |
| Ga0181406_10693554 | 3300017767 | Seawater | AEEYKSVNWLIDELKTKDNYSDLTIEQIRSIYTFGDVWYYDLTQKELIWGDWLTNKQI |
| Ga0181406_10855113 | 3300017767 | Seawater | YSDLTIEEIRSICTFGDVWYYDLTQKELIWGDWLTNK |
| Ga0187217_12010173 | 3300017770 | Seawater | YSDLTIDEIRSICTFGDVWYHDLTQRDIIWGDWLTNK |
| Ga0181425_11217783 | 3300017771 | Seawater | DKLKQKDNYSDLTIDDIRSLCTFGDVWYHDLTQSQIIWGEWLINK |
| Ga0181430_12142893 | 3300017772 | Seawater | YYSDLTIEEIRSICTFGDVWYHDLTQRDIIWGDWLTK |
| Ga0181430_12284121 | 3300017772 | Seawater | DTLKQKHSYSDLTIDEIRSICTFGDVWYHDLTQRDIIWGDWLTNK |
| Ga0181386_12160591 | 3300017773 | Seawater | AKDHYSDLTIEQIRSICTFGDVWYYDLTQKELIWGDWLINK |
| Ga0181394_10893231 | 3300017776 | Seawater | NAKEYKSINWLFDKLKQKDYYSDLTIEEIRSICTFGDVWYHDLTQRDIIWGDWLTK |
| Ga0181395_10801361 | 3300017779 | Seawater | SVNWLIDNLKTKDHYSDLTIEQIRSICTFGDVWYYDLTQKELIWGDWLINK |
| Ga0181568_105164971 | 3300018428 | Salt Marsh | SDLTIDEIRSICTFGDVWYYDLTQKELIWGEWLINE |
| Ga0211505_11538631 | 3300020352 | Marine | LKTKDNYSDLTIEQIRSICTFGDVWYYDLTQKELIWGDWLINK |
| Ga0211647_100720481 | 3300020377 | Marine | AEEYSASINSVFNTLKQKNNYSDLTIDEIRTICTFGDVFYYDLTQRDIIWGDWLTNK |
| Ga0211652_102381402 | 3300020379 | Marine | NAEEYQSVNWLFDKIKTKDHYSDLTIEEIRSICTFGDVWYYDLTQKELIWGDWLINK |
| Ga0211643_106695382 | 3300020457 | Marine | EYQSVNWLIDSIKNKDNYSDLTIDEIRSICTFGDVWYHDLTQKELIWGDWLTNK |
| Ga0206687_14862571 | 3300021169 | Seawater | DKLKQKDYYSDLTIEEIRSICTFGDVWYHDLTQRDIIWGDWLTK |
| Ga0206682_103141801 | 3300021185 | Seawater | KHSYSDLTIDEIRSICTFGDVWYHDLTQRDIIWGDWLTNK |
| Ga0206692_10497651 | 3300021350 | Seawater | HSYSDLTIDEIRSICTFGDVWYHDLTQRDIIWGDWLTNK |
| Ga0213865_101627871 | 3300021373 | Seawater | NAEKHAASINSIFNTLKQKNSYTDLTIDEIRTICTFGDVFYYDLTQRDIIWGDWLTK |
| Ga0212021_10848242 | 3300022068 | Aqueous | AEEYKSVNWLIDSLKEKYNYSELTIDELRSVCTFGDVWYHDLTQSQLIWGEWLINK |
| Ga0196897_10156181 | 3300022158 | Aqueous | SDLTIDQIRSICTFGDVWYHDLTQKDIIWGDWLINK |
| Ga0196897_10246583 | 3300022158 | Aqueous | KNNYSDLTIDQIRSICTFGDVWYHDLTQKDIIWGDWLINK |
| Ga0196903_10137253 | 3300022169 | Aqueous | DLTIDEIRSICTFGDVWYHDLTQRDIIWGDWLTNK |
| Ga0196903_10231461 | 3300022169 | Aqueous | EYKSVNWLIDNLKTKDNYSDLTIEQIRSICTFGDVWYYDLTQKELIWGDWLIKQ |
| Ga0196891_10910381 | 3300022183 | Aqueous | LKQKDNYSDLTIEELRSICTFGDVWYHDLTQKDLIWGDWLINK |
| Ga0255752_102078081 | 3300022929 | Salt Marsh | LKTKDHYSDLTIEQIRSICTFGDVWYHDLTQKELIWGDWLINK |
| (restricted) Ga0233409_100498085 | 3300022938 | Seawater | NWLFDKLKQKDYYSDLTIEEIRSICTFGDVFYHDLTQRDLIWGDWLTK |
| Ga0228692_1040311 | 3300023554 | Seawater | QSVNWLIDNLKTKDNYSDLTIEQIRSICTFGDVWYYDLTQKELIWGDWLIKQ |
| Ga0228687_10136971 | 3300023696 | Seawater | ENAEEYKTVNWLLDILKQKHSYSDLTIDEIRSICTFGDVWYHDLTQRDIIWGDWLTNK |
| Ga0228682_10391931 | 3300023698 | Seawater | ENAEEYQSVNWLFDSIKTKNNYSDLTIDEIRSICTFGDVFYHDLTQKDIIWGDWLINK |
| (restricted) Ga0255050_100836191 | 3300024052 | Seawater | IKNKNNYSDLTIDEIRSICTFGDVLYHDLTQRDIIWGDWLINK |
| Ga0228602_10094854 | 3300024188 | Seawater | LDILKQKHSYSDLTIDEIRSICTFGDVWYHDLTQRDIIWGDWLTNK |
| Ga0228675_10457903 | 3300024247 | Seawater | TLKQKDNYSDLTIEQIRSICTFGDVWYYDLTQKELIWGDWLTKQ |
| Ga0228676_10932551 | 3300024248 | Seawater | ELTIDDIRSLCTFGDVWYHDLTQSQIIWGEWLINK |
| Ga0228660_11045032 | 3300024291 | Seawater | NWLIDNLKTKDNYSDLTIEQIRSICTFGDVWYYDLTQKELIWGDWLINK |
| Ga0228629_10144891 | 3300024296 | Seawater | SVNWLIDNLKTKDNYSDLTIEQIRSICTFGDVWYYDLTQKELIWGDWLIKQ |
| Ga0233400_100702311 | 3300024318 | Seawater | QKHSYSDLTIDEIRSICTFGDVWYHDLTQRDIIWGDWLTNK |
| Ga0233398_11183552 | 3300024320 | Seawater | KDNYSDLTIEQIRSICTFGDVWYYDLTQKELIWGDWLTKQ |
| (restricted) Ga0255049_105551212 | 3300024517 | Seawater | YPSVNWLFDKLKQKDYYSDLTIEEIRSICTFGDVFYHDLTQRDLIWGDWLTK |
| (restricted) Ga0255044_104133822 | 3300024529 | Seawater | YESVNWLFDKIKTKNNYSDLTIDEIRSICTFGDVFYHDLTQKDIIWGDWLINK |
| Ga0208792_10437743 | 3300025085 | Marine | TLKSTDYYSDLTIDSIRSICTFGDVWHHNLTQTQLIYGEWLTK |
| Ga0209645_10865853 | 3300025151 | Marine | EKETKQYPSVGWLIDSIKTKDNYSDLTIDEIRSICTFGDVWYYDLTQKELIWGDWLINK |
| Ga0209645_12077632 | 3300025151 | Marine | DRYSQLTIDDVRSICTFGDVWYNDIPQLELMYGDWLLNK |
| Ga0209337_13053042 | 3300025168 | Marine | NYSELTIDDIRSLCTFGDVWYHDLTQSQIIWGEWLINK |
| Ga0208303_10663983 | 3300025543 | Aqueous | IDSLKEKYNYSELTIDELRSVCTFGDVWYHDLTQSQLIWGDWLINK |
| Ga0209406_10852513 | 3300025694 | Pelagic Marine | ESVNWLFDKLKQKDNYSDLTIDELRSVCTFGDVWYHDLTQSQLIWGEWLINK |
| Ga0208767_12395783 | 3300025769 | Aqueous | NYSDLTIDQIRSICTFGDVWYHDLTQKDIIWGDWLINK |
| Ga0208644_100218928 | 3300025889 | Aqueous | EYESVNWLFDKLKTKDNYSDLTIDQIRSICTFGDVWYHDLTQKDIIWGDWLINK |
| Ga0209630_103080803 | 3300025892 | Pelagic Marine | EIKNKDHYSDLTIEQIRSICTFGDVWYYDLTQKELIWGDWLTK |
| Ga0209567_101261603 | 3300025895 | Pelagic Marine | EYPSVNWLFDKLKQKDYYSDLTIEEIRSICTFGDVFYHDLTQRDLIWGDWLTK |
| Ga0247557_10179091 | 3300026403 | Seawater | YSDLTIEQIRSICTFGDVWYYDLTQKELIWGDWLINK |
| Ga0247568_10325344 | 3300026462 | Seawater | LLDILKQKHSYSDLTIDEIRSICTFGDVWYHDLTQRDIIWGDWLTNK |
| Ga0247588_10362531 | 3300026465 | Seawater | IDSIKTKDNYSDLTIEQIRSICTFGDVWYYDLTQKELIWGDWLTNK |
| Ga0209271_101514943 | 3300027845 | Marine Sediment | KSVNWLIDNLKTKDNYSDLTIEQIRSICTFGDVWYYDLTQKELIWGDWLIKQ |
| Ga0209503_100766305 | 3300027859 | Marine | QKHSYSDLTIEEIRSICTFGDVWYYDLTQKELIWGEWLTTK |
| Ga0209404_106503711 | 3300027906 | Marine | IKTKHRYSELTIDEIRSICTFGDIWYHDLTQGELIWGDWLINK |
| Ga0247582_10248741 | 3300028109 | Seawater | NAEEYKTVNWLLDILKQKHSYSDLTIDEIRSICTFGDVFYHDLTQRDIIWGDWLINK |
| Ga0256368_10866652 | 3300028125 | Sea-Ice Brine | LKQKDNYSDLTIDDIRSLCTFGDVWYHDLTQSQIIWGEWLINK |
| Ga0256411_11954252 | 3300028134 | Seawater | VNWLIDNLKTKDNYSDLTIEQIRSICTFGDVWYYDLTQKELIWGDWLIKQ |
| Ga0228615_10288887 | 3300028418 | Seawater | WLFDKLKQKDYYSDLTIEEIRSICTFGDVWYHDLTQRDIIWGDWLTK |
| Ga0315321_100968331 | 3300032088 | Seawater | FDKLKQKDYYSDLTIEEIRSICTFGDVWYHDLTQRDIIWGDWLTK |
| Ga0316191_111820321 | 3300032258 | Worm Burrow | KSVNWLLDNLKTKDNYSDLTIEQIRSICTFGDVWYYDLTQKELIWGDWLIKQ |
| Ga0316202_103884151 | 3300032277 | Microbial Mat | LDKLKTKDNYSDLTIEQIRSICTFGDVWYYDLTQKELIWGDWLIKQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |