Metagenome / Metatranscriptome Family F072374

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F072374
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	41 residues
Representative Sequence	MAENTDNSRNEVEIDLDKYMAMIEKLDEQEDKIKEMQEE
Number of Associated Samples	100
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	82.64 %
% of genes near scaffold ends (potentially truncated)	99.17 %
% of genes from short scaffolds (< 2000 bps)	82.64 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (31.405 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh (12.397 % of family members)
Environment Ontology (ENVO)	Unclassified (64.463 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (91.736 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 34.33% β-sheet: 0.00% Coil/Unstructured: 65.67%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF12322	T4_baseplate	80.17
PF06841	Phage_T4_gp19	6.61
PF08007	JmjC_2	4.13
PF16075	DUF4815	0.83
PF01501	Glyco_transf_8	0.83
PF01592	NifU_N	0.83
PF06714	Gp5_OB	0.83
PF11246	Phage_gp53	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG2850	Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain	Translation, ribosomal structure and biogenesis [J]	4.13
COG0822	Fe-S cluster assembly scaffold protein IscU, NifU family	Posttranslational modification, protein turnover, chaperones [O]	0.83
COG1442	Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase	Cell wall/membrane/envelope biogenesis [M]	0.83
COG5597	N-acetylglucosaminyl transferase	Cell wall/membrane/envelope biogenesis [M]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	68.60 %
Unclassified	root	N/A	31.40 %

Name	Rank	Taxonomy	Distribution
Viruses	superkingdom	All Organisms → Viruses	35.54 %
cellular organisms	root	All Organisms → cellular organisms	33.06 %
Unclassified	root	N/A	31.40 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.40 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	28.10 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	17.36 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	14.88 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	4.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.40 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	17.36 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	14.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.44 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	5.79 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	4.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.40 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	17.36 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	14.88 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4.96 %
unclassified Euryarchaeota	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota	4.96 %
bacterium TMED277	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED277	3.31 %
bacterium TMED181	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED181	2.48 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.65 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.40 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	17.36 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	14.88 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	4.96 %
Pelagibacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	4.96 %
bacterium TMED277	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED277	3.31 %
bacterium TMED181	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED181	2.48 %
Cellvibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales	0.83 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.40 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	17.36 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	14.88 %
Pelagibacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae	4.96 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	4.96 %
bacterium TMED277	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED277	3.31 %
bacterium TMED181	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED181	2.48 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.83 %
Porticoccaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.40 %
Myoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	16.53 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	14.88 %
unclassified Pelagibacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae	4.96 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	4.96 %
bacterium TMED277	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED277	3.31 %
bacterium TMED181	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED181	2.48 %
unclassified Porticoccaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae	0.83 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.40 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	14.88 %
Pelagibacteraceae bacterium TMED65	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED65	4.96 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	4.96 %
bacterium TMED277	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED277	3.31 %
bacterium TMED181	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED181	2.48 %
Tevenvirinae	subfamily	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Tevenvirinae	1.65 %
Porticoccaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium	0.83 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.40 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	14.88 %
Pelagibacteraceae bacterium TMED65	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED65	4.96 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	4.96 %
bacterium TMED277	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED277	3.31 %
bacterium TMED181	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED181	2.48 %
Tequatrovirus	genus	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Tevenvirinae → Tequatrovirus	1.65 %
Porticoccaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium	0.83 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000928\|OpTDRAFT_10014753	All Organisms → Viruses → Predicted Viral	3794	Open in IMG/M
3300001472\|JGI24004J15324_10021041	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	2211	Open in IMG/M
3300005510\|Ga0066825_10221401	All Organisms → cellular organisms → Bacteria → Proteobacteria	697	Open in IMG/M
3300006404\|Ga0075515_10735567	All Organisms → cellular organisms → Bacteria	1358	Open in IMG/M
3300006737\|Ga0098037_1125942	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	873	Open in IMG/M
3300006789\|Ga0098054_1198486	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	732	Open in IMG/M
3300006874\|Ga0075475_10372558	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	578	Open in IMG/M
3300007539\|Ga0099849_1249177	Not Available	653	Open in IMG/M
3300007667\|Ga0102910_1170553	Not Available	515	Open in IMG/M
3300007725\|Ga0102951_1084552	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	906	Open in IMG/M
3300008964\|Ga0102889_1192189	All Organisms → Viruses	594	Open in IMG/M
3300009001\|Ga0102963_1036719	All Organisms → cellular organisms → Bacteria	2041	Open in IMG/M
3300009001\|Ga0102963_1081966	All Organisms → Viruses → Predicted Viral	1321	Open in IMG/M
3300009027\|Ga0102957_1087525	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	1079	Open in IMG/M
3300009071\|Ga0115566_10049151	All Organisms → Viruses → Predicted Viral	2876	Open in IMG/M
3300009077\|Ga0115552_1085024	All Organisms → cellular organisms → Bacteria	1386	Open in IMG/M
3300009080\|Ga0102815_10383661	Not Available	780	Open in IMG/M
3300009433\|Ga0115545_1286385	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED277	549	Open in IMG/M
3300009445\|Ga0115553_1131591	All Organisms → Viruses → Predicted Viral	1039	Open in IMG/M
3300009472\|Ga0115554_1026636	All Organisms → Viruses → Predicted Viral	2877	Open in IMG/M
3300009476\|Ga0115555_1118975	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED65	1124	Open in IMG/M
3300009498\|Ga0115568_10299510	Not Available	712	Open in IMG/M
3300009508\|Ga0115567_10866913	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	537	Open in IMG/M
3300009550\|Ga0115013_10681726	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED181	696	Open in IMG/M
3300009592\|Ga0115101_1585304	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED277	544	Open in IMG/M
3300009593\|Ga0115011_10450789	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	1012	Open in IMG/M
3300009677\|Ga0115104_10305323	All Organisms → Viruses	2239	Open in IMG/M
3300009677\|Ga0115104_10340251	All Organisms → cellular organisms → Bacteria	1403	Open in IMG/M
3300009677\|Ga0115104_10659397	All Organisms → Viruses → Predicted Viral	1554	Open in IMG/M
3300009677\|Ga0115104_11298840	Not Available	570	Open in IMG/M
3300010149\|Ga0098049_1000172	All Organisms → cellular organisms → Bacteria	25929	Open in IMG/M
3300010149\|Ga0098049_1078552	All Organisms → cellular organisms → Bacteria	1040	Open in IMG/M
3300010150\|Ga0098056_1104115	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	968	Open in IMG/M
3300010151\|Ga0098061_1345533	Not Available	506	Open in IMG/M
3300011311\|Ga0138370_1102165	Not Available	823	Open in IMG/M
3300012920\|Ga0160423_10057315	Not Available	2815	Open in IMG/M
3300012920\|Ga0160423_10068185	All Organisms → Viruses → Predicted Viral	2549	Open in IMG/M
3300012920\|Ga0160423_10084450	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	2257	Open in IMG/M
3300012920\|Ga0160423_10283644	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1142	Open in IMG/M
3300012920\|Ga0160423_10395577	Not Available	945	Open in IMG/M
3300012920\|Ga0160423_10853826	Not Available	611	Open in IMG/M
3300012920\|Ga0160423_11045755	Not Available	546	Open in IMG/M
3300012920\|Ga0160423_11164500	Not Available	515	Open in IMG/M
3300012928\|Ga0163110_10081182	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	2122	Open in IMG/M
3300012936\|Ga0163109_10101680	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	2105	Open in IMG/M
3300012936\|Ga0163109_10273452	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED65	1238	Open in IMG/M
3300012952\|Ga0163180_10344304	All Organisms → Viruses → Predicted Viral	1073	Open in IMG/M
3300012954\|Ga0163111_10606161	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Tevenvirinae → Tequatrovirus	1023	Open in IMG/M
3300016739\|Ga0182076_1373538	Not Available	537	Open in IMG/M
3300016771\|Ga0182082_1120240	Not Available	720	Open in IMG/M
3300017713\|Ga0181391_1065604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED65	841	Open in IMG/M
3300017719\|Ga0181390_1123071	Not Available	674	Open in IMG/M
3300017725\|Ga0181398_1009399	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	2511	Open in IMG/M
3300017732\|Ga0181415_1148732	Not Available	523	Open in IMG/M
3300017748\|Ga0181393_1175981	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED277	526	Open in IMG/M
3300017750\|Ga0181405_1024030	All Organisms → Viruses → Predicted Viral	1680	Open in IMG/M
3300017768\|Ga0187220_1070579	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	1051	Open in IMG/M
3300017773\|Ga0181386_1255387	Not Available	517	Open in IMG/M
3300017782\|Ga0181380_1031352	All Organisms → cellular organisms → Bacteria	1946	Open in IMG/M
3300017782\|Ga0181380_1138662	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED181	832	Open in IMG/M
3300017782\|Ga0181380_1178227	Not Available	717	Open in IMG/M
3300017949\|Ga0181584_10011948	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	6416	Open in IMG/M
3300017950\|Ga0181607_10101517	All Organisms → cellular organisms → Bacteria	1816	Open in IMG/M
3300017956\|Ga0181580_10075965	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	2496	Open in IMG/M
3300017967\|Ga0181590_10366011	All Organisms → cellular organisms → Bacteria	1032	Open in IMG/M
3300018424\|Ga0181591_10121823	All Organisms → cellular organisms → Bacteria	2114	Open in IMG/M
3300018426\|Ga0181566_10140631	Not Available	1818	Open in IMG/M
3300019282\|Ga0182075_1461820	All Organisms → cellular organisms → Bacteria	1407	Open in IMG/M
3300019282\|Ga0182075_1493985	Not Available	1420	Open in IMG/M
3300020014\|Ga0182044_1064481	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED277	539	Open in IMG/M
3300020174\|Ga0181603_10146511	All Organisms → cellular organisms → Bacteria	1029	Open in IMG/M
3300020176\|Ga0181556_1274780	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Tevenvirinae → Tequatrovirus	590	Open in IMG/M
3300020340\|Ga0211594_1136579	Not Available	512	Open in IMG/M
3300020421\|Ga0211653_10237888	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED65	795	Open in IMG/M
3300020436\|Ga0211708_10021563	All Organisms → Viruses → Predicted Viral	2445	Open in IMG/M
3300020436\|Ga0211708_10428655	Not Available	542	Open in IMG/M
3300020438\|Ga0211576_10207845	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	1040	Open in IMG/M
3300020451\|Ga0211473_10111843	All Organisms → Viruses → Predicted Viral	1398	Open in IMG/M
3300020452\|Ga0211545_10406959	Not Available	618	Open in IMG/M
3300020459\|Ga0211514_10624835	Not Available	526	Open in IMG/M
3300021356\|Ga0213858_10010970	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	4284	Open in IMG/M
3300021368\|Ga0213860_10051167	All Organisms → cellular organisms → Bacteria	1765	Open in IMG/M
3300021371\|Ga0213863_10306199	Not Available	664	Open in IMG/M
3300021373\|Ga0213865_10033310	All Organisms → cellular organisms → Bacteria	2888	Open in IMG/M
3300021373\|Ga0213865_10358850	Not Available	659	Open in IMG/M
3300021375\|Ga0213869_10109296	All Organisms → cellular organisms → Bacteria	1335	Open in IMG/M
3300021379\|Ga0213864_10274945	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	855	Open in IMG/M
3300021957\|Ga0222717_10209798	All Organisms → Viruses → Predicted Viral	1151	Open in IMG/M
3300021958\|Ga0222718_10104235	All Organisms → cellular organisms → Bacteria	1666	Open in IMG/M
3300021959\|Ga0222716_10341110	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	890	Open in IMG/M
3300021959\|Ga0222716_10714570	Not Available	530	Open in IMG/M
3300021961\|Ga0222714_10459167	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED181	661	Open in IMG/M
3300021962\|Ga0222713_10558151	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	675	Open in IMG/M
3300022068\|Ga0212021_1132914	Not Available	508	Open in IMG/M
3300023081\|Ga0255764_10256024	All Organisms → cellular organisms → Bacteria	828	Open in IMG/M
3300023116\|Ga0255751_10124175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1560	Open in IMG/M
3300025083\|Ga0208791_1049605	Not Available	735	Open in IMG/M
3300025137\|Ga0209336_10098741	All Organisms → Viruses	828	Open in IMG/M
3300025168\|Ga0209337_1066835	All Organisms → cellular organisms → Bacteria	1794	Open in IMG/M
3300025680\|Ga0209306_1151377	Not Available	658	Open in IMG/M
3300025685\|Ga0209095_1086879	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium	1012	Open in IMG/M
3300025696\|Ga0209532_1192881	Not Available	588	Open in IMG/M
3300025699\|Ga0209715_1103499	All Organisms → Viruses → Predicted Viral	1046	Open in IMG/M
3300025719\|Ga0209252_1058795	All Organisms → Viruses → Predicted Viral	1407	Open in IMG/M
3300025769\|Ga0208767_1081797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED65	1356	Open in IMG/M
3300025769\|Ga0208767_1279964	Not Available	502	Open in IMG/M
3300025830\|Ga0209832_1074186	All Organisms → Viruses → Predicted Viral	1137	Open in IMG/M
3300025876\|Ga0209223_10432906	Not Available	552	Open in IMG/M
3300025881\|Ga0209309_10494108	All Organisms → Viruses	509	Open in IMG/M
3300025892\|Ga0209630_10095830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED65	1614	Open in IMG/M
3300025897\|Ga0209425_10049064	All Organisms → Viruses → Predicted Viral	2831	Open in IMG/M
3300025897\|Ga0209425_10194621	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	1088	Open in IMG/M
3300026495\|Ga0247571_1123302	Not Available	606	Open in IMG/M
3300027906\|Ga0209404_10131313	Not Available	1508	Open in IMG/M
3300028196\|Ga0257114_1066308	All Organisms → Viruses → Predicted Viral	1549	Open in IMG/M
3300031510\|Ga0308010_1249657	Not Available	624	Open in IMG/M
3300031628\|Ga0308014_1029946	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1388	Open in IMG/M
3300031773\|Ga0315332_10935456	Not Available	518	Open in IMG/M
3300032032\|Ga0315327_10468154	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	785	Open in IMG/M
3300032047\|Ga0315330_10028263	All Organisms → Viruses → Predicted Viral	3773	Open in IMG/M
3300032136\|Ga0316201_11097185	Not Available	667	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	96.69%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	3.31%

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	23.14%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	18.18%
Unclassified	Environmental → Aquatic → Marine → Unclassified	17.36%
Coastal	Environmental → Aquatic → Marine → Coastal	12.40%
Pelagic	Environmental → Aquatic → Marine → Pelagic	10.74%
Strait	Environmental → Aquatic → Marine → Strait	9.09%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	4.96%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	3.31%
Inlet	Environmental → Aquatic → Marine → Inlet	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	17.36%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	13.22%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	12.40%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	11.57%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	10.74%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	9.92%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	9.09%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	4.96%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	3.31%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	3.31%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	2.48%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	0.83%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	0.83%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	12.40%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	12.40%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	10.74%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	10.74%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	9.92%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	9.09%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	6.61%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	4.96%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	4.96%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	4.13%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	2.48%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	2.48%
Pond Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water	2.48%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	1.65%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	0.83%
Marine	Environmental → Aquatic → Marine → Inlet → Unclassified → Marine	0.83%
Worm Burrow	Environmental → Aquatic → Marine → Coastal → Sediment → Worm Burrow	0.83%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	0.83%
Freshwater And Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine	0.83%
Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000928	Marine plume microbial communities from the Columbia River - 25 PSU	Environmental	Open in IMG/M
3300001472	Marine viral communities from the Pacific Ocean - LP-32	Environmental	Open in IMG/M
3300005510	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV45	Environmental	Open in IMG/M
3300006404	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_RNA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006737	Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG	Environmental	Open in IMG/M
3300006789	Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG	Environmental	Open in IMG/M
3300006874	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA	Environmental	Open in IMG/M
3300007539	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG	Environmental	Open in IMG/M
3300007667	Estuarine microbial communities from the Columbia River estuary - metaG 1558A-3	Environmental	Open in IMG/M
3300007725	Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_B_H2O_MG	Environmental	Open in IMG/M
3300008964	Estuarine microbial communities from the Columbia River estuary - metaG 1551A-02	Environmental	Open in IMG/M
3300009001	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG	Environmental	Open in IMG/M
3300009027	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_H2O_MG	Environmental	Open in IMG/M
3300009071	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405	Environmental	Open in IMG/M
3300009077	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328	Environmental	Open in IMG/M
3300009080	Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.759	Environmental	Open in IMG/M
3300009433	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330	Environmental	Open in IMG/M
3300009445	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110331	Environmental	Open in IMG/M
3300009472	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110404	Environmental	Open in IMG/M
3300009476	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110407	Environmental	Open in IMG/M
3300009498	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120426	Environmental	Open in IMG/M
3300009508	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120412	Environmental	Open in IMG/M
3300009550	Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome	Environmental	Open in IMG/M
3300009592	Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_20Mar14_M1_3um Metatranscriptome (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009593	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome	Environmental	Open in IMG/M
3300009677	Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - CN13ID_70_C50_10m_0.8um Metatranscriptome (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010149	Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaG	Environmental	Open in IMG/M
3300010150	Marine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaG	Environmental	Open in IMG/M
3300010151	Marine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaG	Environmental	Open in IMG/M
3300011311	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S23 DCM_A metaT (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300012920	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG	Environmental	Open in IMG/M
3300012928	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaG	Environmental	Open in IMG/M
3300012936	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaG	Environmental	Open in IMG/M
3300012952	Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 Metagenome	Environmental	Open in IMG/M
3300012954	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St18 metaG	Environmental	Open in IMG/M
3300016739	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071408BT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016771	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071412BT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017713	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11	Environmental	Open in IMG/M
3300017719	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21	Environmental	Open in IMG/M
3300017725	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 21 SPOT_SRF_2011-04-29	Environmental	Open in IMG/M
3300017732	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 38 SPOT_SRF_2012-12-11	Environmental	Open in IMG/M
3300017748	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 16 SPOT_SRF_2010-10-21	Environmental	Open in IMG/M
3300017750	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 28 SPOT_SRF_2011-11-29	Environmental	Open in IMG/M
3300017768	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23 (version 2)	Environmental	Open in IMG/M
3300017773	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 9 SPOT_SRF_2010-03-24	Environmental	Open in IMG/M
3300017782	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19	Environmental	Open in IMG/M
3300017949	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017950	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)	Environmental	Open in IMG/M
3300017956	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017967	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018424	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018426	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101402AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300019282	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071407BT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020014	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011503CT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020174	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041409US metaG (spades assembly)	Environmental	Open in IMG/M
3300020176	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011505AT metaG (spades assembly)	Environmental	Open in IMG/M
3300020340	Marine microbial communities from Tara Oceans - TARA_B100001121 (ERX555960-ERR599119)	Environmental	Open in IMG/M
3300020421	Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556005-ERR599007)	Environmental	Open in IMG/M
3300020436	Marine microbial communities from Tara Oceans - TARA_B100000424 (ERX556009-ERR598984)	Environmental	Open in IMG/M
3300020438	Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)	Environmental	Open in IMG/M
3300020451	Marine microbial communities from Tara Oceans - TARA_B100001778 (ERX555927-ERR598996)	Environmental	Open in IMG/M
3300020452	Marine microbial communities from Tara Oceans - TARA_B100001173 (ERX556054-ERR599078)	Environmental	Open in IMG/M
3300020459	Marine microbial communities from Tara Oceans - TARA_X000000368 (ERX555913-ERR599095)	Environmental	Open in IMG/M
3300021356	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245	Environmental	Open in IMG/M
3300021368	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550	Environmental	Open in IMG/M
3300021371	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497	Environmental	Open in IMG/M
3300021373	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282	Environmental	Open in IMG/M
3300021375	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132	Environmental	Open in IMG/M
3300021379	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO247	Environmental	Open in IMG/M
3300021957	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D	Environmental	Open in IMG/M
3300021958	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D	Environmental	Open in IMG/M
3300021959	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D	Environmental	Open in IMG/M
3300021961	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D	Environmental	Open in IMG/M
3300021962	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D	Environmental	Open in IMG/M
3300022068	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (v2)	Environmental	Open in IMG/M
3300023081	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG	Environmental	Open in IMG/M
3300023116	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG	Environmental	Open in IMG/M
3300025083	Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG (SPAdes)	Environmental	Open in IMG/M
3300025137	Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)	Environmental	Open in IMG/M
3300025168	Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)	Environmental	Open in IMG/M
3300025680	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328 (SPAdes)	Environmental	Open in IMG/M
3300025685	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110404 (SPAdes)	Environmental	Open in IMG/M
3300025696	Pelagic Microbial community sample from North Sea - COGITO 998_met_02 (SPAdes)	Environmental	Open in IMG/M
3300025699	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120503 (SPAdes)	Environmental	Open in IMG/M
3300025719	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI074_LV_135m_DNA (SPAdes)	Environmental	Open in IMG/M
3300025769	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes)	Environmental	Open in IMG/M
3300025830	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110407 (SPAdes)	Environmental	Open in IMG/M
3300025876	Pelagic Microbial community sample from North Sea - COGITO 998_met_06 (SPAdes)	Environmental	Open in IMG/M
3300025881	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120412 (SPAdes)	Environmental	Open in IMG/M
3300025892	Pelagic Microbial community sample from North Sea - COGITO 998_met_01 (SPAdes)	Environmental	Open in IMG/M
3300025897	Pelagic Microbial community sample from North Sea - COGITO 998_met_05 (SPAdes)	Environmental	Open in IMG/M
3300026495	Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 24R (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300027906	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)	Environmental	Open in IMG/M
3300028196	Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_10m	Environmental	Open in IMG/M
3300031510	Marine microbial communities from water near the shore, Antarctic Ocean - #129	Environmental	Open in IMG/M
3300031628	Marine microbial communities from water near the shore, Antarctic Ocean - #229	Environmental	Open in IMG/M
3300031773	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 34915	Environmental	Open in IMG/M
3300032032	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 32315	Environmental	Open in IMG/M
3300032047	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 34915	Environmental	Open in IMG/M
3300032136	Coastal sediment microbial communities from Delaware Bay, Delaware, United States - CS-6 worm burrow	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
OpTDRAFT_100147531	3300000928	Freshwater And Marine	MAEGTDNSRNEVEIDLDKYMALIEKLDASEDMIKEMQVEAAAAKKR
JGI24004J15324_100210414	3300001472	Marine	MSEESKDTSKNEVEIDLDKYMALIEKLDAQEDVIKEMKEDAIKARNGLEP
Ga0066825_102214013	3300005510	Marine	MAEGVDNSRNEVEIDLDKYMALIEKLDKSEDTIKEMKAEAEAARKQ
Ga0075515_107355671	3300006404	Aqueous	MAEGQDNSRNEVEIDLDKYMALIEKLDAAEDTIAEMQDEAKKAREQ
Ga0098037_11259421	3300006737	Marine	MASRRDRDRNEVEIDLDKYMAMIEKLDEQEDKIKEMQEEARKAR
Ga0098054_11984863	3300006789	Marine	MAEGTDSSRNEVEIDLDKYMALIDKLDTAEDTIAEMQEEARKVKDR
Ga0075475_103725583	3300006874	Aqueous	MAEGQDNSRNEVEIDLDKYMAMIEKLDEQEDKIKEMQEEAKKAR
Ga0099849_12491773	3300007539	Aqueous	MAEGQDNSRNEVEIDLDKYMALIDKLDKSEDMIKEMQLEAAEA
Ga0102910_11705531	3300007667	Estuarine	MADNTDNSKNEVEIDLDKYMALIEKLDAQEDVIKE
Ga0102951_10845523	3300007725	Water	MAENTDNSRNEVEIDLDKYMAMIEKLDEQEDQIREM
Ga0102889_11921891	3300008964	Estuarine	MADNQDNSRNEVEIDLDKYMAMIEKLDEQEDAIKEMKEEA
Ga0102963_10367194	3300009001	Pond Water	MAENTDNSRNEVEIDLDKYMAMIEKLDEQEDQIREMKEEAKKARDQLSP
Ga0102963_10819661	3300009001	Pond Water	MADEKDYKDQSSNEVEIDLDKYMALIEKLDEQEDVIKEMKEDAIKAK
Ga0102957_10875253	3300009027	Pond Water	MAETDNSRNEVEIDLDKYMAMIEKLDEQEDKIKDMQEEARKARDQLSP
Ga0115566_100491515	3300009071	Pelagic Marine	MAEETKDMSSNEVEIDLDKYMALIEKLDEQEDVIREMKEDAIKAKRGLEPP
Ga0115552_10850241	3300009077	Pelagic Marine	MAENTDNSRNEVEIDLDKYMAMIEKLDEQEDKIKEMQEEAKKARD
Ga0102815_103836612	3300009080	Estuarine	MAEETKDMSSNEVEIDLDKYMALIEKLDEQEDIIKEM
Ga0115545_12863851	3300009433	Pelagic Marine	MAEGSDNSRNEVEIDLDKYMALIEKLDKSEDMIKE
Ga0115553_11315911	3300009445	Pelagic Marine	MAEETKDMSSNEVEIDLDKYMALIEKLDEQEDVIREM
Ga0115554_10266365	3300009472	Pelagic Marine	MAEETKDMSSNEVEIDLDKYMALIEKLDEQEDVIREMKEDAIKAKRGLEPPKR
Ga0115555_11189754	3300009476	Pelagic Marine	MAENTDNSRNEVEIDLDKYMAMIEKLDEQEDKIKEMQEEAK
Ga0115568_102995103	3300009498	Pelagic Marine	MAENKDNSRNEVEIDLDKYMAMIDKLDEQEDQIKEMKEEARQAAERLGPRK
Ga0115567_108669133	3300009508	Pelagic Marine	MADNNTDNSRNEVEIDLDKYMALIDKLDKSEDMIKEMQLEAAEA
Ga0115013_106817262	3300009550	Marine	MAENSDNSRNEVEIDLDKYMSLIDKLDKAEDTIVEMQEE
Ga0115101_15853042	3300009592	Marine	MAEGTDNSRNEVEIDLDKYMALIEKLDKSEDMIKEMQLE
Ga0115011_104507893	3300009593	Marine	MAEESKDTSRNEVEIDLEKYMALIDKLDAQEDVIREMKE
Ga0115104_103053235	3300009677	Marine	MAENQDNSRNEVEIDLDKYMAMIDKLDEQEDQIKEMKEEARQA
Ga0115104_103402514	3300009677	Marine	MADNQDNSRNEVEIDLDKYMAMIDKLDEQEDQIKEMKEEARQA
Ga0115104_106593973	3300009677	Marine	MAKDNDSNEVEIDLDKYMALIEKLDEQEDQIKEMKED
Ga0115104_112988401	3300009677	Marine	MAEETKDMSSNEVEIDLDKYMALIEKLDEQEDVIREMKEDAIKAK
Ga0098049_10001721	3300010149	Marine	MAEGQDNSRNEVEIDLDKYMALIDKLDKSEDMIKEMQLEA
Ga0098049_10785522	3300010149	Marine	MAEGQDNSRNEVEIDLDKYMALIDKLDKSEDMIKEMQ
Ga0098056_11041153	3300010150	Marine	MADNQDNSRNEVEIDLDKYMAMIDKLDEQEDQIKEMKEEARMAAEQLGPR
Ga0098061_13455333	3300010151	Marine	MAEGTDSSRNEVEIDLDKYMALIDKLDTAEDTIAEMQEEARKV
Ga0138370_11021654	3300011311	Marine	MADNNAQDNSRNEVEIDLDKYMSLIEKLDTAEDTIREMQLEAAEAKKRLA
Ga0160423_100573151	3300012920	Surface Seawater	MAESQDNSRNEVEIDLDKYMSLIDKLDNAEDTIKEMQAEAAEAKK
Ga0160423_100681856	3300012920	Surface Seawater	MAEEKDNSRNEVEIDLEKYMALLEQLDEQEDKIKEM
Ga0160423_100844505	3300012920	Surface Seawater	MAENTDTSRNEVEIDLDKYMSLIDKLDEQEDKIKEMQEEAKKARDQ
Ga0160423_102836444	3300012920	Surface Seawater	MAENTDTSRNEVEIDLDKYMSLIDKLDEQEDKIKEMQEEAKKARDQLAP
Ga0160423_103955773	3300012920	Surface Seawater	MAENTDTSRNEVEIDLDKYMSLIDKLDEQEDKIKEMQEEAKKA
Ga0160423_108538261	3300012920	Surface Seawater	MAEQDNSRNEVEIDLDKYMNLINKLDDAEDTIKAMQAEAAEAKKRLA
Ga0160423_110457552	3300012920	Surface Seawater	MAENDNSRNEVEIDLDKYMNLINKLDDAEDTIKAMQAEAAEAKKRLA
Ga0160423_111645003	3300012920	Surface Seawater	MAENTDTSRNEVEIDLDKYMSLIDKLDEQEDKIKEMQEEAKKARDQLAPPK
Ga0163110_100811821	3300012928	Surface Seawater	MAENTDTSRNEVEIDLDKYMSLIDKLDEQEDKIKEMQEEAKKARD
Ga0163109_101016805	3300012936	Surface Seawater	MAENTDTSRNEVEIDLDKYMSLIDKLDEQEDKIKEMQEEAK
Ga0163109_102734521	3300012936	Surface Seawater	MAENVDNDRNEVEIDLDKYMSLIDKLDKAEDTIKD
Ga0163180_103443043	3300012952	Seawater	MATIESDNSRNEVQIDLDKYMKLVDKLDAAEDLIE
Ga0163111_106061611	3300012954	Surface Seawater	MAENTDTSRNEVEIDLDKYMSLIDKLDEQEDKIKEMQEEAKKAR
Ga0182076_13735381	3300016739	Salt Marsh	MAEGTDSSRNEVEIDLDKYMALIEKFDNAEDTIKEMKDEAE
Ga0182082_11202402	3300016771	Salt Marsh	MAEATTHDHDRNEVEIDLDKYMELINKLDAAEDTITAMK
Ga0181391_10656042	3300017713	Seawater	MAETQDNSRNEVEIDLDKYMAMIEKLDEQEDQIKEMKDEAKR
Ga0181390_11230711	3300017719	Seawater	MAENQDNSRNEVEIDLDKYMAMIDKLDEQEDQIKEMKEEA
Ga0181398_10093996	3300017725	Seawater	MAENQDNSRNEVEIDLDKYMAMIDKLDEQEDQIKEMKE
Ga0181415_11487322	3300017732	Seawater	MAEETKDMSSNEVEIDLDKYMALIEKLDEQEDVIREMQEDAIKAH
Ga0181393_11759811	3300017748	Seawater	MAEGTDNSRNEVEIDLDKYMALIEKLDKSEDMIKE
Ga0181405_10240303	3300017750	Seawater	MAKDNDSNEVEIDLDKYMALIEKLDEQEDQIKEMKEDAIAARN
Ga0187220_10705793	3300017768	Seawater	MADNQDNSRNEVEIDLDKYMAMIDKLDEQEDQIKEMKEEARQAAERLG
Ga0181386_12553872	3300017773	Seawater	MAEESKTVDSRNEVEIDLEKYMALIEKLDEQEDVI
Ga0181380_10313521	3300017782	Seawater	MAENQDNSRNEVEIDLDKYMAMIDKLDEQEDQIKEMKEE
Ga0181380_11386622	3300017782	Seawater	MAENQDNSRNEVEIDLDKYMAMIEKLDEQEDQIKDMK
Ga0181380_11782271	3300017782	Seawater	MAETQDNSRNEVEIDLDKYMAMIEKLDEQEDQIKEMKDEAKRAR
Ga0181584_100119481	3300017949	Salt Marsh	MAEGQDNSRNEVEIDLDKYMGLIDKLDKAEDTIKEMQLEA
Ga0181607_101015171	3300017950	Salt Marsh	MAETDNSRNEVEIDLDKYMAMIEKLDEQEDKIKEMQ
Ga0181580_100759651	3300017956	Salt Marsh	MAEGQDNSRNEVEIDLDKYMGLIDKLDKAEDTIKEMQ
Ga0181590_103660112	3300017967	Salt Marsh	MAEGQDNSRNEVEIDLDKYMAMIEKLDEQEDKIKEMQEEAKK
Ga0181591_101218234	3300018424	Salt Marsh	MAEGQDNSRNEVEIDLDKYMAMIEKLDEQEDKIKEM
Ga0181566_101406311	3300018426	Salt Marsh	MSEATDNSRNEVQIDLDKYMRLVEKLDDAEDTIKL
Ga0182075_14618204	3300019282	Salt Marsh	MAEGQDSSRNEVEIDLDKYMALIDKLDKAEDTIVEMQEEARKVKSQL
Ga0182075_14939855	3300019282	Salt Marsh	MSEATDNSRNEVQIDLDKYMRLVEKLDDAEDTIKLLK
Ga0182044_10644811	3300020014	Salt Marsh	MAEGTDNSRNEVEIDLDKYMALIEKLDNAEDTIKDMQA
Ga0181603_101465111	3300020174	Salt Marsh	MAETDNSRNEVEIDLDKYMAMIEKLDEQEDKIKEMQE
Ga0181556_12747803	3300020176	Salt Marsh	MAEGQDNSRNEVEIDLDKYMSLIDKLDQAEDTIKDMQLEA
Ga0211594_11365793	3300020340	Marine	MAESQDTSRNEVEIDLDKYMSLIDKLDEQEDKIKEMQEEAKKARDQLA
Ga0211653_102378881	3300020421	Marine	MAENQDNDRNEVEIDLDKYMALIDKLDKSEDMIKE
Ga0211708_100215635	3300020436	Marine	MAENTDTSRNEVEIDLDKYMSLIDKLDEQEDKIKE
Ga0211708_104286553	3300020436	Marine	MAESKDTSRNEVEIDLDKYMSLIDKLDEQEDKIKE
Ga0211576_102078451	3300020438	Marine	MADNQDNSRNEVEIDLDKYMAMIDKLDEQEDQIKEMKEEARQ
Ga0211473_101118436	3300020451	Marine	MAELETDNSRNEVQIDLDKYMKLVDKLDEAEDLIEK
Ga0211545_104069592	3300020452	Marine	MAENQDNSRNEVEIDLDKYMAMIDKLDAQEDTIKEMKE
Ga0211514_106248353	3300020459	Marine	MAEESKTVDSRNEVEIDLEKYMALIEKLDEQEDVIKEM
Ga0213858_100109708	3300021356	Seawater	MAETDNSRNEVEIDLDKYMAMIEKLDEQEDKIKEMQEEAKRA
Ga0213860_100511671	3300021368	Seawater	MAEGQDNSRNEVEIDLDKYMALIDKLDQAEDTIKDMQLEAAEAKK
Ga0213863_103061992	3300021371	Seawater	MADNQDNSRNEVEIDLDKYMAMIEKLDQQEDQIKEMQEEARRAAEAL
Ga0213865_100333106	3300021373	Seawater	MAEGQDNSRNEVEIDLDKYMGLIDKLDQAEDTIKEMQ
Ga0213865_103588503	3300021373	Seawater	MAETDNSRNEVEIDLDKYMAMIEKLDEQEDKIKEMQEEAK
Ga0213869_101092964	3300021375	Seawater	MAEGQDNSRNEVEIDLDKYMAMIEKLDEQEDKIKEMQ
Ga0213864_102749453	3300021379	Seawater	MAEGQDNSRNEVEIDLDKYMALIDKLDQAEDTINDMQ
Ga0222717_102097981	3300021957	Estuarine Water	MADEKEYKDQSSNEVEIDLDKYMALIEKLDEQEDVIKEMKED
Ga0222718_101042351	3300021958	Estuarine Water	MAENTDNSRNEVEIDLDKYMAMIEKLDEQEDQIREMKEEAKKA
Ga0222716_103411101	3300021959	Estuarine Water	MAEGQDSSRNEVEIDLDKYMALIDKLDKAEDTIVEMQEEARKV
Ga0222716_107145703	3300021959	Estuarine Water	MAKDNDSNEVEIDLDKYMALIEKLDEQEDQIKEMKEDAI
Ga0222714_104591671	3300021961	Estuarine Water	MAEGQDNSRNEVEIDLDKYMALIDKLDKSEDMIKEM
Ga0222713_105581511	3300021962	Estuarine Water	MAEGQDNSRNEVEIDLDKYMALIDKLDQAEDTIKDMQ
Ga0212021_11329142	3300022068	Aqueous	MAEGQDNSRNEVEIDLDKYMGLIDKLDQAEDTIKEMQLE
Ga0255764_102560241	3300023081	Salt Marsh	MAEGQDNSRNEVEIDLDKYMGLIDKLDKAEDTIKEMQLEAA
Ga0255751_101241751	3300023116	Salt Marsh	MAEGQDNSRNEVEIDLDKYMGLIDKLDKAEDTIKEMQL
Ga0208791_10496052	3300025083	Marine	MGDKDEKDKSTNEVEISLEKYMALIDKLDEQEDNIKEMQE
Ga0209336_100987411	3300025137	Marine	MAENQDNSRNEVEIDLDKYMAMIDKLDEQEDQIKEM
Ga0209337_10668354	3300025168	Marine	MADNQDNSRNEVEIDLDKYMAMIDKLGEQEDQIKEMKEQAIEAAE
Ga0209306_11513771	3300025680	Pelagic Marine	MAETDNSRNEVEIDLDKYMAMIEKLDEQEDKIKEMQEEAKKARD
Ga0209095_10868792	3300025685	Pelagic Marine	MAEETKDMSSNEVEIDLDKYMALIEKLDEQEDVIREMKEDAIKAKRG
Ga0209532_11928811	3300025696	Pelagic Marine	MAEETKDMSSNEVEIDLDKYMALIEKLDEQEDVIREMKE
Ga0209715_11034991	3300025699	Pelagic Marine	MADEKEYKDQSSNEVEIDLDKYMALIEKLDEQEDV
Ga0209252_10587953	3300025719	Marine	MADNTDNSKNEVEIDLDKYMALIEKLDAQEDVIKEMKEDAI
Ga0208767_10817974	3300025769	Aqueous	MAEGQDSSRNEVEIDLDKYMALIDKLDKAEDTIVEMQ
Ga0208767_12799641	3300025769	Aqueous	MAEGQDNSRNEVEIDLDKYMGLIDKLDQAEDTIKEMQLEAAEAKK
Ga0209832_10741863	3300025830	Pelagic Marine	MADEKEYKDQSSNEVEIDLDKYMALIEKLDEQEDVIKEMKEDAIKAK
Ga0209223_104329062	3300025876	Pelagic Marine	MSDKEKDKSTNEVEISLEKYMALIDKLDEQEDNIKEMQEE
Ga0209309_104941081	3300025881	Pelagic Marine	MADNNTDNSRNEVEIDLDKYMALIDKLDKSEDMIKEMQL
Ga0209630_100958301	3300025892	Pelagic Marine	MAENTDNSRNEVEIDLDKYMAMIEKLDEQEDKIKEMQEE
Ga0209425_100490645	3300025897	Pelagic Marine	MAEETKDMSSNEVEIDLDKYMALIEKLDEQEDVIREMKEDAIK
Ga0209425_101946211	3300025897	Pelagic Marine	MAENTDNSRNEVEIDLDKYMAMIEKLDEQEDKIKEMQ
Ga0247571_11233021	3300026495	Seawater	MADGVDSRNEVEIDLDKYMKLIDQLDEQEDKIKEMQAEAA
Ga0209404_101313131	3300027906	Marine	MSENNDNSRNEVEIDLDKYMKLIDKLDNAEDTIKEMKD
Ga0257114_10663081	3300028196	Marine	MGDKDEKDKSTNEVEISLEKYMALIDKLDEQEDNIKEMQEEAK
Ga0308010_12496572	3300031510	Marine	MADNQQDNSRNEVEIDLEKYMAMIDKLDEQEDQIK
Ga0308014_10299464	3300031628	Marine	MSDESKDTSKNEVEIDLDKYMALIEKLDAQEDVIKEMKDDA
Ga0315332_109354562	3300031773	Seawater	MAEESKTVDSRNEVEIDLEKYMALIEKLDEQEDVIKE
Ga0315327_104681543	3300032032	Seawater	MADNQDNSRNEVEIDLDKYMAMIEKLDEQEDQIKEMKEE
Ga0315330_100282631	3300032047	Seawater	MAKDNDSNEVEIDLDKYMALIEKLDEQEDQIKEMKEDAIAA
Ga0316201_110971851	3300032136	Worm Burrow	MAEQDNSRNEVEIDLDKYMAMIEKLDEQEDKIKEMQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F072374

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences