Metagenome / Metatranscriptome Family F072522

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F072522
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	46 residues
Representative Sequence	VGKAPRPNYDTYKKGSYHDFDVGGDKPPVWYPQPKNPVGGKX
Number of Associated Samples	107
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.65 %
% of genes near scaffold ends (potentially truncated)	98.35 %
% of genes from short scaffolds (< 2000 bps)	93.39 %
Associated GOLD sequencing projects	102
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (41.322 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (14.050 % of family members)
Environment Ontology (ENVO)	Unclassified (65.289 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (90.083 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
Feature Viewer

Powered by Feature Viewer

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF01165	Ribosomal_S21	35.54
PF05118	Asp_Arg_Hydrox	35.54
PF01555	N6_N4_Mtase	6.61
PF00011	HSP20	5.79
PF08534	Redoxin	1.65
PF11753	DUF3310	0.83
PF00004	AAA	0.83
PF01327	Pep_deformylase	0.83
PF01818	Translat_reg	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG0828	Ribosomal protein S21	Translation, ribosomal structure and biogenesis [J]	35.54
COG3555	Aspartyl/asparaginyl beta-hydroxylase, cupin superfamily	Posttranslational modification, protein turnover, chaperones [O]	35.54
COG0863	DNA modification methylase	Replication, recombination and repair [L]	6.61
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	6.61
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	6.61
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	5.79
COG0242	Peptide deformylase	Translation, ribosomal structure and biogenesis [J]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	59.50 %
Unclassified	root	N/A	40.50 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	42.98 %
Unclassified	root	N/A	40.50 %
Viruses	superkingdom	All Organisms → Viruses	16.53 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	41.32 %
Unclassified	root	N/A	40.50 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	14.88 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	1.65 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	0.83 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	40.50 %
Unclassified	root	N/A	40.50 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	14.88 %
DPANN group	clade	All Organisms → cellular organisms → Archaea → DPANN group	1.65 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.50 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	34.71 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	14.88 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4.13 %
Candidatus Woesearchaeota	phylum	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota	1.65 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.50 %
Rickettsiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales	32.23 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	14.88 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4.13 %
Candidatus Woesearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1.65 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	0.83 %
Pelagibacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.50 %
unclassified Rickettsiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales	32.23 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	14.88 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4.13 %
Candidatus Woesearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1.65 %
unclassified Caudoviricetes	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes	0.83 %
Pelagibacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.50 %
Rickettsiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	32.23 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	14.88 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4.13 %
Candidatus Woesearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1.65 %
Candidatus Pelagibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	0.83 %
Caudoviricetes sp.	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.50 %
Rickettsiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	32.23 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	14.88 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4.13 %
Candidatus Woesearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1.65 %
unclassified Candidatus Pelagibacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter	0.83 %
Caudoviricetes sp.	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.50 %
Rickettsiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	32.23 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	14.88 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4.13 %
Candidatus Woesearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1.65 %
Candidatus Pelagibacter sp. TMED239	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED239	0.83 %
Caudoviricetes sp.	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.	0.83 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000116\|DelMOSpr2010_c10037856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	2198	Open in IMG/M
3300000117\|DelMOWin2010_c10074875	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	1346	Open in IMG/M
3300000148\|SI47jul10_100mDRAFT_c1042014	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	620	Open in IMG/M
3300001353\|JGI20159J14440_10222148	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	511	Open in IMG/M
3300001589\|JGI24005J15628_10067807	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	1303	Open in IMG/M
3300006190\|Ga0075446_10167590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	621	Open in IMG/M
3300006193\|Ga0075445_10311974	Not Available	530	Open in IMG/M
3300006357\|Ga0075502_1170914	Not Available	750	Open in IMG/M
3300006384\|Ga0075516_1408982	All Organisms → Viruses → Predicted Viral	3275	Open in IMG/M
3300006393\|Ga0075517_1023163	Not Available	1252	Open in IMG/M
3300006404\|Ga0075515_10992149	Not Available	646	Open in IMG/M
3300006571\|Ga0075505_1484722	Not Available	5363	Open in IMG/M
3300006802\|Ga0070749_10557044	Not Available	621	Open in IMG/M
3300006802\|Ga0070749_10655187	Not Available	563	Open in IMG/M
3300006916\|Ga0070750_10273404	Not Available	728	Open in IMG/M
3300006916\|Ga0070750_10305615	Not Available	679	Open in IMG/M
3300007231\|Ga0075469_10148472	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	639	Open in IMG/M
3300007231\|Ga0075469_10192483	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	546	Open in IMG/M
3300007276\|Ga0070747_1165891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	789	Open in IMG/M
3300007345\|Ga0070752_1301127	Not Available	611	Open in IMG/M
3300007555\|Ga0102817_1032791	All Organisms → Viruses → Predicted Viral	1143	Open in IMG/M
3300007778\|Ga0102954_1285040	Not Available	502	Open in IMG/M
3300008999\|Ga0102816_1050901	All Organisms → Viruses → Predicted Viral	1231	Open in IMG/M
3300009079\|Ga0102814_10636383	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	585	Open in IMG/M
3300009124\|Ga0118687_10348913	Not Available	565	Open in IMG/M
3300009172\|Ga0114995_10425460	Not Available	727	Open in IMG/M
3300009420\|Ga0114994_10437875	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	864	Open in IMG/M
3300009425\|Ga0114997_10259506	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	975	Open in IMG/M
3300009425\|Ga0114997_10449030	Not Available	691	Open in IMG/M
3300009428\|Ga0114915_1047012	All Organisms → Viruses → Predicted Viral	1405	Open in IMG/M
3300009505\|Ga0115564_10276260	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	848	Open in IMG/M
3300009507\|Ga0115572_10693522	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	555	Open in IMG/M
3300009508\|Ga0115567_10388991	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	860	Open in IMG/M
3300009544\|Ga0115006_10522372	All Organisms → Viruses → Predicted Viral	1040	Open in IMG/M
3300009703\|Ga0114933_10701617	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	648	Open in IMG/M
3300009785\|Ga0115001_10295922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	1027	Open in IMG/M
3300009785\|Ga0115001_11003231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	500	Open in IMG/M
3300009786\|Ga0114999_10938474	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	630	Open in IMG/M
3300010148\|Ga0098043_1179119	Not Available	592	Open in IMG/M
3300010296\|Ga0129348_1255918	Not Available	588	Open in IMG/M
3300011254\|Ga0151675_1095649	Not Available	856	Open in IMG/M
3300011258\|Ga0151677_1044169	Not Available	833	Open in IMG/M
3300011258\|Ga0151677_1139612	Not Available	551	Open in IMG/M
3300012920\|Ga0160423_10884189	Not Available	600	Open in IMG/M
3300012936\|Ga0163109_11014937	Not Available	606	Open in IMG/M
3300013195\|Ga0116815_1033417	Not Available	692	Open in IMG/M
3300017710\|Ga0181403_1017277	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	1537	Open in IMG/M
3300017714\|Ga0181412_1108468	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	648	Open in IMG/M
3300017734\|Ga0187222_1125894	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	574	Open in IMG/M
3300017735\|Ga0181431_1064116	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	827	Open in IMG/M
3300017743\|Ga0181402_1061176	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	1003	Open in IMG/M
3300017746\|Ga0181389_1138062	Not Available	654	Open in IMG/M
3300017750\|Ga0181405_1145238	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	588	Open in IMG/M
3300017755\|Ga0181411_1198647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	564	Open in IMG/M
3300017758\|Ga0181409_1153982	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	671	Open in IMG/M
3300017763\|Ga0181410_1038957	All Organisms → Viruses → Predicted Viral	1495	Open in IMG/M
3300017763\|Ga0181410_1207433	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	535	Open in IMG/M
3300017767\|Ga0181406_1191712	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	608	Open in IMG/M
3300017818\|Ga0181565_10679321	Not Available	655	Open in IMG/M
3300017949\|Ga0181584_10573804	Not Available	686	Open in IMG/M
3300017950\|Ga0181607_10591343	Not Available	584	Open in IMG/M
3300018048\|Ga0181606_10690255	Not Available	518	Open in IMG/M
3300018416\|Ga0181553_10166187	All Organisms → cellular organisms → Bacteria → Proteobacteria	1301	Open in IMG/M
3300019765\|Ga0194024_1048693	All Organisms → cellular organisms → Bacteria	937	Open in IMG/M
3300020054\|Ga0181594_10341227	Not Available	664	Open in IMG/M
3300020174\|Ga0181603_10330282	Not Available	578	Open in IMG/M
3300020176\|Ga0181556_1124328	All Organisms → Viruses → Predicted Viral	1113	Open in IMG/M
3300020188\|Ga0181605_10063057	All Organisms → Viruses → Predicted Viral	2020	Open in IMG/M
3300020191\|Ga0181604_10063276	All Organisms → Viruses → Predicted Viral	2102	Open in IMG/M
3300020372\|Ga0211683_10218598	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	605	Open in IMG/M
3300020394\|Ga0211497_10268819	Not Available	639	Open in IMG/M
3300020426\|Ga0211536_10237452	Not Available	710	Open in IMG/M
3300020428\|Ga0211521_10102718	All Organisms → Viruses → Predicted Viral	1378	Open in IMG/M
3300020430\|Ga0211622_10218440	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	818	Open in IMG/M
3300020431\|Ga0211554_10386533	Not Available	649	Open in IMG/M
3300020445\|Ga0211564_10375382	Not Available	699	Open in IMG/M
3300020478\|Ga0211503_10099567	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1719	Open in IMG/M
3300020595\|Ga0206126_10162621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	1057	Open in IMG/M
3300021364\|Ga0213859_10205670	Not Available	911	Open in IMG/M
3300021389\|Ga0213868_10439729	Not Available	713	Open in IMG/M
3300021957\|Ga0222717_10109199	All Organisms → Viruses → Predicted Viral	1723	Open in IMG/M
3300021958\|Ga0222718_10213975	All Organisms → Viruses	1044	Open in IMG/M
3300021958\|Ga0222718_10230029	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	995	Open in IMG/M
3300021958\|Ga0222718_10521901	Not Available	570	Open in IMG/M
3300021959\|Ga0222716_10284055	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1006	Open in IMG/M
3300021960\|Ga0222715_10435192	Not Available	709	Open in IMG/M
3300022921\|Ga0255765_1108236	Not Available	1415	Open in IMG/M
3300022937\|Ga0255770_10166562	All Organisms → Viruses → Predicted Viral	1147	Open in IMG/M
3300023175\|Ga0255777_10286073	Not Available	940	Open in IMG/M
3300023180\|Ga0255768_10496027	Not Available	619	Open in IMG/M
3300023273\|Ga0255763_1214124	Not Available	746	Open in IMG/M
3300024428\|Ga0233396_1073812	Not Available	873	Open in IMG/M
3300025168\|Ga0209337_1093320	All Organisms → Viruses → Predicted Viral	1423	Open in IMG/M
3300025168\|Ga0209337_1302414	Not Available	578	Open in IMG/M
3300025652\|Ga0208134_1140762	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	619	Open in IMG/M
3300025696\|Ga0209532_1133094	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	795	Open in IMG/M
3300025853\|Ga0208645_1078888	All Organisms → Viruses → Predicted Viral	1437	Open in IMG/M
3300025870\|Ga0209666_1143384	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	1095	Open in IMG/M
3300025889\|Ga0208644_1267015	Not Available	698	Open in IMG/M
3300025897\|Ga0209425_10227436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	976	Open in IMG/M
3300026077\|Ga0208749_1027033	Not Available	1212	Open in IMG/M
3300026270\|Ga0207993_1154835	Not Available	596	Open in IMG/M
3300027186\|Ga0208797_1011774	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	1231	Open in IMG/M
3300027320\|Ga0208923_1065717	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	643	Open in IMG/M
3300027771\|Ga0209279_10182606	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED239	620	Open in IMG/M
3300027791\|Ga0209830_10134318	All Organisms → Viruses → Predicted Viral	1199	Open in IMG/M
3300027883\|Ga0209713_10455211	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	839	Open in IMG/M
3300028194\|Ga0257106_1262921	Not Available	574	Open in IMG/M
3300028197\|Ga0257110_1081466	All Organisms → Viruses → Predicted Viral	1376	Open in IMG/M
3300028197\|Ga0257110_1082051	All Organisms → Viruses → Predicted Viral	1370	Open in IMG/M
3300028197\|Ga0257110_1192668	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.	793	Open in IMG/M
3300028198\|Ga0257121_1014702	All Organisms → cellular organisms → Bacteria → Proteobacteria	3953	Open in IMG/M
3300028297\|Ga0228617_1057003	Not Available	1075	Open in IMG/M
3300031142\|Ga0308022_1160077	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	644	Open in IMG/M
3300031143\|Ga0308025_1139918	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	864	Open in IMG/M
3300031143\|Ga0308025_1141682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	857	Open in IMG/M
3300031143\|Ga0308025_1166528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	771	Open in IMG/M
3300031519\|Ga0307488_10159639	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	1569	Open in IMG/M
3300031659\|Ga0307986_10186488	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	938	Open in IMG/M
3300031851\|Ga0315320_10119464	All Organisms → Viruses → Predicted Viral	2000	Open in IMG/M
3300032011\|Ga0315316_10003094	Not Available	12044	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	97.52%
Freshwater	Environmental → Aquatic → Freshwater	0.83%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	0.83%
Sediment	Environmental → Aquatic → Sediment	0.83%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	20.66%
Oceanic	Environmental → Aquatic → Marine → Oceanic	19.83%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	19.83%
Unclassified	Environmental → Aquatic → Marine → Unclassified	18.18%
Strait	Environmental → Aquatic → Marine → Strait	9.92%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	4.13%
Pelagic	Environmental → Aquatic → Marine → Pelagic	3.31%
River	Environmental → Aquatic → Freshwater → River	0.83%
Inlet	Environmental → Aquatic → Marine → Inlet	0.83%
Volcanic	Environmental → Aquatic → Marine → Volcanic	0.83%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	0.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	20.66%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	18.18%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	18.18%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	12.40%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	9.92%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	4.13%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	4.13%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	3.31%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	3.31%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	1.65%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	0.83%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	0.83%
Unclassified	Environmental → Aquatic → Marine → Volcanic → Unclassified	0.83%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	0.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	14.05%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	13.22%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	12.40%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	9.92%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	9.09%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	4.96%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	4.13%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	4.13%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	3.31%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	3.31%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	2.48%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	2.48%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	2.48%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	1.65%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	1.65%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	1.65%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	1.65%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	0.83%
Deep Ocean	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean	0.83%
Marine	Environmental → Aquatic → Marine → Inlet → Unclassified → Marine	0.83%
Sackhole Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine	0.83%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.83%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	0.83%
Deep Subsurface	Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface	0.83%
Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water	0.83%
Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment	0.83%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000116	Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010	Environmental	Open in IMG/M
3300000117	Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010	Environmental	Open in IMG/M
3300000148	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 47 07/07/10 100m	Environmental	Open in IMG/M
3300001353	Pelagic Microbial community sample from North Sea - COGITO 998_met_09	Environmental	Open in IMG/M
3300001589	Marine viral communities from the Pacific Ocean - LP-40	Environmental	Open in IMG/M
3300006190	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA	Environmental	Open in IMG/M
3300006193	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNA	Environmental	Open in IMG/M
3300006357	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_RNA1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006384	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_RNA1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006393	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_RNA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006404	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_RNA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006571	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_RNA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006802	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18	Environmental	Open in IMG/M
3300006916	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24	Environmental	Open in IMG/M
3300007231	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_>0.8_DNA	Environmental	Open in IMG/M
3300007276	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31	Environmental	Open in IMG/M
3300007345	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30	Environmental	Open in IMG/M
3300007555	Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.555	Environmental	Open in IMG/M
3300007778	Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_C_H2O_MG	Environmental	Open in IMG/M
3300008999	Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.545	Environmental	Open in IMG/M
3300009079	Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741	Environmental	Open in IMG/M
3300009124	Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsf	Environmental	Open in IMG/M
3300009172	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154	Environmental	Open in IMG/M
3300009420	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152	Environmental	Open in IMG/M
3300009425	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136	Environmental	Open in IMG/M
3300009428	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55	Environmental	Open in IMG/M
3300009505	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110523	Environmental	Open in IMG/M
3300009507	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607	Environmental	Open in IMG/M
3300009508	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120412	Environmental	Open in IMG/M
3300009544	Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean- Svalbard ARC20M Metagenome	Environmental	Open in IMG/M
3300009703	Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV12_W25 metaG	Environmental	Open in IMG/M
3300009785	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130	Environmental	Open in IMG/M
3300009786	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126	Environmental	Open in IMG/M
3300010148	Marine viral communities from the Subarctic Pacific Ocean - 9B_ETSP_OMZ_AT15188_CsCl metaG	Environmental	Open in IMG/M
3300010296	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.8_DNA	Environmental	Open in IMG/M
3300011254	Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, 0.02	Environmental	Open in IMG/M
3300011258	Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, permeate	Environmental	Open in IMG/M
3300012920	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG	Environmental	Open in IMG/M
3300012936	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaG	Environmental	Open in IMG/M
3300013195	Marine hypoxic microbial communities from the Gulf of Mexico, USA - 10m_Station7_GOM_Metagenome	Environmental	Open in IMG/M
3300017710	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28	Environmental	Open in IMG/M
3300017714	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15	Environmental	Open in IMG/M
3300017734	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 4 SPOT_SRF_2009-09-24 (version 2)	Environmental	Open in IMG/M
3300017735	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 54 SPOT_SRF_2014-05-21	Environmental	Open in IMG/M
3300017743	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 25 SPOT_SRF_2011-08-17	Environmental	Open in IMG/M
3300017746	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 12 SPOT_SRF_2010-06-29	Environmental	Open in IMG/M
3300017750	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 28 SPOT_SRF_2011-11-29	Environmental	Open in IMG/M
3300017755	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 34 SPOT_SRF_2012-07-09	Environmental	Open in IMG/M
3300017758	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 32 SPOT_SRF_2012-05-30	Environmental	Open in IMG/M
3300017763	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 33 SPOT_SRF_2012-06-20	Environmental	Open in IMG/M
3300017767	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 29 SPOT_SRF_2011-12-20	Environmental	Open in IMG/M
3300017818	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017949	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017950	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)	Environmental	Open in IMG/M
3300018048	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041412US metaG (megahit assembly)	Environmental	Open in IMG/M
3300018416	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG (megahit assembly)	Environmental	Open in IMG/M
3300019765	Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW13Sep16_MG	Environmental	Open in IMG/M
3300020054	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071413BT metaG (spades assembly)	Environmental	Open in IMG/M
3300020174	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041409US metaG (spades assembly)	Environmental	Open in IMG/M
3300020176	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011505AT metaG (spades assembly)	Environmental	Open in IMG/M
3300020188	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041411US metaG (spades assembly)	Environmental	Open in IMG/M
3300020191	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041410US metaG (spades assembly)	Environmental	Open in IMG/M
3300020372	Marine microbial communities from Tara Oceans - TARA_B100000787 (ERX556133-ERR599090)	Environmental	Open in IMG/M
3300020394	Marine microbial communities from Tara Oceans - TARA_B000000557 (ERX556068-ERR599026)	Environmental	Open in IMG/M
3300020426	Marine microbial communities from Tara Oceans - TARA_B100000378 (ERX555992-ERR599112)	Environmental	Open in IMG/M
3300020428	Marine microbial communities from Tara Oceans - TARA_E500000331 (ERX556032-ERR599094)	Environmental	Open in IMG/M
3300020430	Marine microbial communities from Tara Oceans - TARA_B100000683 (ERX556126-ERR599160)	Environmental	Open in IMG/M
3300020431	Marine microbial communities from Tara Oceans - TARA_B100001142 (ERX556101-ERR598983)	Environmental	Open in IMG/M
3300020445	Marine microbial communities from Tara Oceans - TARA_B100001996 (ERX555961-ERR599087)	Environmental	Open in IMG/M
3300020478	Marine microbial communities from Tara Oceans - TARA_B100000029 (ERX556025-ERR599111)	Environmental	Open in IMG/M
3300020595	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160412_1	Environmental	Open in IMG/M
3300021364	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304	Environmental	Open in IMG/M
3300021389	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127	Environmental	Open in IMG/M
3300021957	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D	Environmental	Open in IMG/M
3300021958	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D	Environmental	Open in IMG/M
3300021959	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D	Environmental	Open in IMG/M
3300021960	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D	Environmental	Open in IMG/M
3300022921	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041407BS metaG	Environmental	Open in IMG/M
3300022937	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071404AT metaG	Environmental	Open in IMG/M
3300023175	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101402AT metaG	Environmental	Open in IMG/M
3300023180	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG	Environmental	Open in IMG/M
3300023273	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaG	Environmental	Open in IMG/M
3300024428	Seawater microbial communities from Monterey Bay, California, United States - 32D	Environmental	Open in IMG/M
3300025168	Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)	Environmental	Open in IMG/M
3300025652	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (SPAdes)	Environmental	Open in IMG/M
3300025696	Pelagic Microbial community sample from North Sea - COGITO 998_met_02 (SPAdes)	Environmental	Open in IMG/M
3300025853	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (SPAdes)	Environmental	Open in IMG/M
3300025870	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNA (SPAdes)	Environmental	Open in IMG/M
3300025889	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)	Environmental	Open in IMG/M
3300025897	Pelagic Microbial community sample from North Sea - COGITO 998_met_05 (SPAdes)	Environmental	Open in IMG/M
3300026077	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_DCM_ad_63m_LV_B (SPAdes)	Environmental	Open in IMG/M
3300026270	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV265 (SPAdes)	Environmental	Open in IMG/M
3300027186	Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.555 (SPAdes)	Environmental	Open in IMG/M
3300027320	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575 (SPAdes)	Environmental	Open in IMG/M
3300027771	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG006-DNA (SPAdes)	Environmental	Open in IMG/M
3300027791	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130 (SPAdes)	Environmental	Open in IMG/M
3300027883	Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean- Svalbard ARC20M Metagenome (SPAdes)	Environmental	Open in IMG/M
3300028194	Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_10m	Environmental	Open in IMG/M
3300028197	Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_10m	Environmental	Open in IMG/M
3300028198	Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI106_100	Environmental	Open in IMG/M
3300028297	Seawater microbial communities from Monterey Bay, California, United States - 18D	Environmental	Open in IMG/M
3300031142	Marine microbial communities from water near the shore, Antarctic Ocean - #353	Environmental	Open in IMG/M
3300031143	Marine microbial communities from water near the shore, Antarctic Ocean - #422	Environmental	Open in IMG/M
3300031519	Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2	Environmental	Open in IMG/M
3300031659	Marine microbial communities from Ellis Fjord, Antarctic Ocean - #82	Environmental	Open in IMG/M
3300031851	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515	Environmental	Open in IMG/M
3300032011	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 3416	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOSpr2010_100378561	3300000116	Marine	KKPRYTKEDVQKGVAIGKTAMPDYDTYKKGSYHDYDVGGDKPPVWYPQPKNPVGGK*
DelMOWin2010_100748751	3300000117	Marine	KPRYTKEDVQKGVAIGKTAMPDYDTYKKGSYHDFDVGGDKPPVWYPQPKNPVGGK*
SI47jul10_100mDRAFT_10420142	3300000148	Marine	LAIGKTNRPNYDTYKKGSYHDFDVGGDKPPVWYPQPKNPVGGK*
JGI20159J14440_102221481	3300001353	Pelagic Marine	SLDKSKKPRYTKDDVQQGLAVGKAPRPNYDTYKKGSYHDFDVGGDKPPVWYPQPKNPVGGK*
JGI24005J15628_100678071	3300001589	Marine	MPNYDTYKKGSYHDYNVGGDNPPVWIRQPKNPIGGK*
Ga0075446_101675902	3300006190	Marine	VYVKYSAFSKEEIANGVGGKAPRPNYDTYKKGSYHDYDVGGDNPPVWYPQPKNPVGGKFKN
Ga0075445_103119742	3300006193	Marine	KTAMPNYDTYKPGSYHDYDVGGDNRPVWIPQPKNPVKGK*
Ga0075502_11709141	3300006357	Aqueous	SKKPRYTKEDVSKGLAVGKTARPDYNTYKKGSYHDFDVGGNNPPVWEKQPKNEMGGK*
Ga0075516_14089821	3300006384	Aqueous	VGKTARPNYDTYKKGSYHDFDVGGDNPPVWEKQPKNEMGGK*
Ga0075517_10231631	3300006393	Aqueous	LAVGKTARPDYNTYKKGSYHDFDVGGDNPPVWEKQPKNEMGGK*
Ga0075515_109921491	3300006404	Aqueous	VGKTARPDYNTYKKGSYHDFDVGGNNPPVWEKQPKNEMGGK*
Ga0075505_148472213	3300006571	Aqueous	LDKSKKPRYTKEDVSKGLAVGKTARPNYDTYKKGSYHDFDVGGDNPPVWEKQPKNEMGGK
Ga0070749_105570441	3300006802	Aqueous	RPNYKTYKKGSYHDFDVGGDKPPVWEKQPKNEMGGK*
Ga0070749_106551871	3300006802	Aqueous	KSKKPRYTKEDVSKGLAVGKTARPDYNTYKKGSYHDFDVGGNNPPVWEKQPKNEMGGK*
Ga0070750_102734041	3300006916	Aqueous	KGVKGQAPKPDYSTYKKGSYHDYDVGGDNPPVWEKQPKNEMGGK*
Ga0070750_103056152	3300006916	Aqueous	TKEDVSKGLAVGKTARPDYNTYKKGSYHDFDVGGNNPPVWEKQPKNEMGGK*
Ga0075469_101484722	3300007231	Aqueous	GVAIGKTAMPDYDTYKKGSYHDYDVGGDKPPVWYPQPKNPVGGK*
Ga0075469_101924831	3300007231	Aqueous	KSKKPRYTKEDVQKGVAIGKTAMPDYDTYKKGSYHDFDVGGDKPPVWYPQPKNPVGGK*
Ga0070747_11658911	3300007276	Aqueous	DKSKKPRYTKEDVQKGVAIGKTAMPDYDTYKKGSYHDFDVGGDKPPVWYPQPKNPVGGK*
Ga0070752_13011271	3300007345	Aqueous	KPAYTKEDIEKGITGKAPRPDYNTYKKGSYHDFDVGGDKPPVWEKQPKNEMGGK*
Ga0102817_10327913	3300007555	Estuarine	EVKQGLAIGKTIRPNYDTYKKGSYHDFDVGGDNPPIWIRQPKNPVGGK*
Ga0102954_12850402	3300007778	Water	GKTARPNYDTYKKGSYHDFDVGGDNPPVWEKQPKNEMGGK*
Ga0102816_10509011	3300008999	Estuarine	GLAIGKTNRPNYDTYKKGSYHDFDVGGDKPPVWYPQPKNPVGGK*
Ga0102814_106363831	3300009079	Estuarine	DVQKGVAIGKTAMPDYDTYKKGSYHDYDVGGDKPPVWYPQPKNPVGGK*
Ga0118687_103489132	3300009124	Sediment	TARPNYDTYKKGSYHDFDVGGDNPPVWEKQPKNEMGGK*
Ga0114995_104254601	3300009172	Marine	IKAGVKGKTSMPNYDTYKKGSYHDYDVGGDNRPIWIPQPKNPVKGK*
Ga0114994_104378752	3300009420	Marine	NKPAYSKEDIEKGVKGKAPMPNYDTYKKGSYHDYDVGGDNPPVWFPQPKNPVGGK*
Ga0114997_102595061	3300009425	Marine	EDIEKGITGKAPMPNYDTYKKGSYHDYDVGGDKPPVWYPQPKNPVGGK*
Ga0114997_104490301	3300009425	Marine	NYDTYKKGSYHDYDVGGDNRPIWIPQPKNPVKGK*
Ga0114915_10470124	3300009428	Deep Ocean	EIANGVGGKAPRPNYDTYKKGSYHDYDVGGDNPPVWYPQPKNPVGGK*
Ga0115564_102762601	3300009505	Pelagic Marine	DVQQGLAVGKAPRPNYDTYKKGSYHDFDVGGDKPPVWYPQPKNPVGGK*
Ga0115572_106935223	3300009507	Pelagic Marine	APRPNYDTYKKGSYHDFDVGGDKPPVWYPQPKNPVGGK*
Ga0115567_103889913	3300009508	Pelagic Marine	GKTAMPDYDTYKKGSYHDYDVGGDKPPVWYPQPKNPVGGK*
Ga0115006_105223723	3300009544	Marine	IGKTIRPNYDTYKKGSYHDFDVGGDNPPIWIRQPKNPVGGK*
Ga0114933_107016171	3300009703	Deep Subsurface	KGQAPMPDYDTYKKGSYHDYDVGGDNPPEWQPQPKNNMAGK*
Ga0115001_102959221	3300009785	Marine	KEDVKRGLAVGKTNRPNYDTYKKGSYHDFDVGGDNPPKWEKQPKK*
Ga0115001_110032312	3300009785	Marine	KTAMPDYDTYKKGSYHDYDVGGDKPPVWYPQPKNPVGGK*
Ga0114999_109384741	3300009786	Marine	RPNYDTYKKGSYHDYDVGGDNPPVWYPQPKNPVGGK*
Ga0098043_11791192	3300010148	Marine	KEDIENGVTGKAPTPDYKSYKPNTYHDYDVGGDKPPVWERQPKNEMGGK*
Ga0129348_12559181	3300010296	Freshwater To Marine Saline Gradient	TGKAPRPDYKTYKKGSYHDFDVGGDKPPVWEKQPKNEMGGK*
Ga0151675_10956493	3300011254	Marine	LVKTIRPNYDTYKKGSYHDFDVGGDNRPIWIPQPKNPVGGK*
Ga0151677_10441691	3300011258	Marine	PNYDTYKKGSYHDFDVGGDNPPIWIKQPKNPVGGK*
Ga0151677_11396121	3300011258	Marine	DKSKIPHYDNDDIKKGRKGTAAKPDYSTYKKGSYHDYDVGGDKPPVWEKQPKNEMGGK*
Ga0160423_108841892	3300012920	Surface Seawater	DYSTYKKGSYHDYDVGGDKPPVWEKQPKNEMGGK*
Ga0163109_110149371	3300012936	Surface Seawater	KEEIEQGVKGHAPAPDYKTYKPNTYHDYDVGGDKPPVWERQPKNEMGGK*
Ga0116815_10334172	3300013195	Marine	KKPAFTKDDIDKGVKGQAPRPDYSTYKKGSYHDYDVGGDNPPVWEKQPKNEMGGK*
Ga0181403_10172775	3300017710	Seawater	EDIKESKKGKTAMPTYDTYKKGSSHDFDVGGDKPPVWYPQPKNPVGGK
Ga0181412_11084681	3300017714	Seawater	EVKKGLAIGKTSRPNYDTYKKGSYHDFDVGGDNPPVWYPQPKNPVGGKX
Ga0187222_11258941	3300017734	Seawater	QGLAVGKAPRPNYDTYKKGSYHDFDVGGDKPPVWYPQPKNPVGGKX
Ga0181431_10641161	3300017735	Seawater	PGWSKEDIKEGKKGKTAMPNYDTYKKGSYHDFDVGGDKPPVWYPQPKNPVGGK
Ga0181402_10611761	3300017743	Seawater	KKGKTAMPNYDTYKKGSYHDFDVGGDKPPVWYPQPKNPVGGK
Ga0181389_11380621	3300017746	Seawater	DIKEGKKGKTAMPNYDTYKKGSYHDFDVGGDNPPIWIRQPKNPVGGK
Ga0181405_11452382	3300017750	Seawater	LDKSRKPAYTKEDIKEGKKGKTAMPNYDTYKKGSYHDFDVGGDKPPVWYPQPKNPVGGKX
Ga0181411_11986471	3300017755	Seawater	GKKGKTAMPNYDTYKKGSYHDFDVGGDKPPVWYPQPKNPIGGKX
Ga0181409_11539821	3300017758	Seawater	NYDTYKKGSYHDYDVGGDKPPVWYPQPKNPIGGKX
Ga0181410_10389575	3300017763	Seawater	AMPNYDTYKKGSYHDYDVGGDKPPVWYPQPKNPVGGK
Ga0181410_12074332	3300017763	Seawater	APMPDYDTYKKGSYHDYDVGGDNPPEWQPQPKNNMAGK
Ga0181406_11917121	3300017767	Seawater	KKPRYTKEDVQKGLAIGKTAMPDYDTYKKGSYHDFDVGGDKPPVWYPQPKNPVGGKX
Ga0181565_106793212	3300017818	Salt Marsh	GTAAKPDYSTYKKGSYHDYDVGGDKPPVWEKQPKNEMGGK
Ga0181584_105738041	3300017949	Salt Marsh	SKKPAYTKEDIEKGITGKAPRPDYKTYKKGSYHDFDVGGDKPPVWEKQPKNEMGGK
Ga0181607_105913432	3300017950	Salt Marsh	APRPNYKTYKKGSYHDFDVGGDKPPVWEKQPKNEMGGK
Ga0181606_106902552	3300018048	Salt Marsh	KKPAYTKEDIEKGLTGKAPRPDYKTYKKGSYHDFDVGGNNPPVWEKQPKNEMGGK
Ga0181553_101661871	3300018416	Salt Marsh	PDYSTYKKGSYHDYDVGGDKPPVWEKQPKNEMGGK
Ga0194024_10486931	3300019765	Freshwater	KPAYTKEDIEKGITGKAPRPDYNTYKKGSYHDFDVGGDKPPVWEKQPKNEMGGK
Ga0181594_103412272	3300020054	Salt Marsh	RPDYKTYKKGSYHDFDVGGDKPPVWEKQPKNEMGGK
Ga0181603_103302821	3300020174	Salt Marsh	GKAPRPDYKTYKKGSYHDFDVGGDKPPVWEKQPKNEMGGK
Ga0181556_11243281	3300020176	Salt Marsh	EKGITGKAPRPNYKTYKKGSYHDFDVGGDKPPVWEKQPKNEMGGK
Ga0181605_100630575	3300020188	Salt Marsh	KATRPDYKTYKKGSYHDFDVGGDKPPVWEKQPKNEMGGK
Ga0181604_100632761	3300020191	Salt Marsh	AYTKEDIEKGITGKAPKPDYKTYKKGSYHDFDVGGDKPPVWEKQPKNEMGGK
Ga0211683_102185982	3300020372	Marine	DTYKKGSYHDYDVGGDNPPVWYPQPKNPVGGKXLKN
Ga0211497_102688192	3300020394	Marine	GRKGTATRPDYSTYKKGSYHDYDVGGDKPPVWEKQPKNEMGGK
Ga0211536_102374523	3300020426	Marine	DKGVKGQAPRPDYSTYKKGSYHDYDVGGDNPPVWEKQPKNEMGGK
Ga0211521_101027184	3300020428	Marine	TKDDIDKGVKGQAPKPDYDTYKKGSYHDYDVGGDNPPVWEKQPKNEMGGK
Ga0211622_102184401	3300020430	Marine	GKAPRPDYSTYKQGSYHDYDVGGDKPPVWERQPKNEMGGK
Ga0211554_103865332	3300020431	Marine	KGVKGQAPRPDYSTYKKGSYHDYDVGGDKPPVWERQPKNEMGGK
Ga0211564_103753821	3300020445	Marine	KSKKPAFTSDEIKRGVKGHAPAPDYKTYKPNTYHDYDVGGDNPPVWERQPKNDMGGK
Ga0211503_100995674	3300020478	Marine	GVKGHAPAPDYKTYKPNTYHDYDVGGDKPPVWERQPKNDMGGK
Ga0206126_101626211	3300020595	Seawater	KTNRPNYDTYKKGSYHDFDVGGDKPPVWYPQPKNPVGGK
Ga0213859_102056701	3300021364	Seawater	GKAPTPDYKSYKPNTYHDYDVGGDKPPVWERQPKNEMGGK
Ga0213868_104397292	3300021389	Seawater	TKEDIEKGITGKAPRPNYKTYKKGSYHDFDVGGDKPPVWEKQPKNEMGGK
Ga0222717_101091991	3300021957	Estuarine Water	TAMPNYDTYKKGSYHDYDVGGDKPPVWYPQPKNPVGGK
Ga0222718_102139751	3300021958	Estuarine Water	EDVSKGLAVGKTARPNYDTYKKGSYHDFDVGGDNPPVWEKQPKNEMGGK
Ga0222718_102300293	3300021958	Estuarine Water	VGKTARPNYDTYKKGSYHDFDVGGDNPPVWEKQPKNEMGGK
Ga0222718_105219012	3300021958	Estuarine Water	PAYTKEDIEKGITGKAPRPNYKTYKKGSYHDFDVGGDKPPVWEKQPKNEMGGK
Ga0222716_102840551	3300021959	Estuarine Water	GKTARPNYDTYKKGSYHDFDVGGDNPPVWEKQPKNEMGGK
Ga0222715_104351922	3300021960	Estuarine Water	PRYTKEDVSKGLAVGKTARPNYDTYKKGSYHDFDVGGDNPPVWEKQPKNEMGGK
Ga0255765_11082364	3300022921	Salt Marsh	KKEDIEKGITGKAPKPDYKTYKKGSYHDFDVGGDKPPVWEKQPKNEMGGK
Ga0255770_101665621	3300022937	Salt Marsh	SKKPAYTKEDIEKGITGKAPRPNYKTYKKGSYHDFDVGGDKPPVWEKQPKNEMGGK
Ga0255777_102860733	3300023175	Salt Marsh	KGTAAKPDYSTYKKGSYHDYDVGGDKPPVWEKQPKNEMGGK
Ga0255768_104960272	3300023180	Salt Marsh	KAPRPNYKTYKKGSYHDFDVGGDKPPVWEKQPKNEMGGK
Ga0255763_12141241	3300023273	Salt Marsh	IEKGITGKAPRPDYKTYKKGSYHDFDVGGDKPPVWEKQPKNEMGGK
Ga0233396_10738121	3300024428	Seawater	APTPDYKSYKPNTYHDYDVGGDKPPVWERQPKNEMGGK
Ga0209337_10933204	3300025168	Marine	IGKTIRPNYDTYKKGSYHDFDVGGDNPPIWIRQPKNPVGGK
Ga0209337_13024142	3300025168	Marine	EEIKAGATGKAPMPNYDTYKKGSYHDFDVGGDNPPIWIRQPKNPVGGK
Ga0208134_11407621	3300025652	Aqueous	IGKTAMPDYDTYKKGSYHDFDVGGDKPPVWYPQPKNPVGGKX
Ga0209532_11330942	3300025696	Pelagic Marine	VGKAPRPNYDTYKKGSYHDFDVGGDKPPVWYPQPKNPVGGKX
Ga0208645_10788881	3300025853	Aqueous	ARPDYNTYKKGSYHDFDVGGDKPPVWEKQPKNEMGGK
Ga0209666_11433843	3300025870	Marine	KQGLAIGKTNRPNYDTYKKGSYHDFDVGGDKPPVWYPQPKNPVGGKX
Ga0208644_12670152	3300025889	Aqueous	DKSKKPRYTKEDVSKGLAVGKTARPDYNTYKKGSYHDFDVGGNNPPVWEKQPKNEMGGK
Ga0209425_102274361	3300025897	Pelagic Marine	KSKKPRYTKEDVQKGVAIGKTAMPDYDTYKKGSYHDYDVGGDKPPVWYPQPKNPVGGK
Ga0208749_10270333	3300026077	Marine	EDIENGVTGKAPTPDYKSYKPNTYHDYDVGGDKPPVWERQPKNEMGGK
Ga0207993_11548351	3300026270	Marine	HAPAPDYKTYKPNTYHDYDVGGDKPPVWERQPKNEMGGK
Ga0208797_10117741	3300027186	Estuarine	KGLAIGKTSRPNYDTYKKGSYHDFDVGGDNPPVWYPQPKNPVGGKX
Ga0208923_10657171	3300027320	Estuarine	TGKAPMPNYDTYKKGSYHDYDVGGDKPPVWYPQPKNPVGGKX
Ga0209279_101826062	3300027771	Marine	EEIAKGVSGKAPKPNYDTYKKGSYHDYDVGGDNRPVWIKPKKNEPRLK
Ga0209830_101343183	3300027791	Marine	EIKAGVKGKTSMPNYDTYKKGSYHDYDVGGDNRPIWIPQPKNPVSGK
Ga0209713_104552111	3300027883	Marine	KEEVKKGLAIGKTSRPNYDTYKKGSYHDFDVGGDNPPVWYPQPKNPVGGKX
Ga0257106_12629212	3300028194	Marine	EEIKAGAKGKAPMPNYDTYKKGSYHDYDVGGDNRPVWIRQPKNPVGGK
Ga0257110_10814664	3300028197	Marine	YTKEDVKRGLAVGKTNRPNYDTYKKGSYHDFDVGGDNPPVWYPQPKNPVGGK
Ga0257110_10820514	3300028197	Marine	MPNYDTYKKGSYHDYDVGGDNRPVWIRQPKNPVGGK
Ga0257110_11926682	3300028197	Marine	PMPDYDTYKKGSYHDFDVGGDNPPRWEKQPKNPVEGK
Ga0257121_10147021	3300028198	Marine	QQGLAVGKAPRPNYDTYKKGSYHDFDVGGDKPPVWYPQPKNPVGGK
Ga0228617_10570033	3300028297	Seawater	GVTGKAPTPDYKSYKPNTYHDYDVGGDKPPVWERQPKNEMGGK
Ga0308022_11600772	3300031142	Marine	VKYSAFSKEEIANGVGGKAPRPNYDTYKKGSYHDYDVGGDNPPVWYPQPKNPVGGK
Ga0308025_11399183	3300031143	Marine	GKTAMPNYDTYKKGSYHDYDVGGDNRPIWIPQPKNPVGGK
Ga0308025_11416823	3300031143	Marine	GGKAPRPNYDTYKKGSYHDYDVGGDNPPVWYPQPKNPVGGK
Ga0308025_11665282	3300031143	Marine	GKTAMPNYDTYKKGSYHDYDVGGDNRPIWIPQPKNPVGGKXFKN
Ga0307488_101596391	3300031519	Sackhole Brine	PRYTKEEVKQGLAIGKTNRPNYDTYKKGSYHDFDVGGDKPPVWYPQPKNPVGGK
Ga0307986_101864883	3300031659	Marine	SAFSKEEIANGVGGKAPRPNYDTYKKGSYHDYDVGGDNPPVWYPQPKNPVGGKXFKN
Ga0315320_101194646	3300031851	Seawater	PTPDYKSYKPNTYHDYDVGGDKPPVWERQPKNEMGGK
Ga0315316_1000309420	3300032011	Seawater	KPAFTKDDIDKGVKGQAPKPDYDTYKKGSYHDYDVGGDNPPVWEKQPKNEMGGK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F072522

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences