Metagenome / Metatranscriptome Family F072548

Basic Information
Family ID	F072548
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	45 residues
Representative Sequence	MLGLWAVLTLTGALYSAWLGYGGRAFAATLTAFAFFFLVML
Number of Associated Samples	98
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.64

Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (26.446 % of family members)
Environment Ontology (ENVO)	Unclassified (27.273 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (64.463 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.17% β-sheet: 0.00% Coil/Unstructured: 47.83%
Feature Viewer

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Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF07786	HGSNAT_cat	69.42
PF02687	FtsX	9.09
PF12704	MacB_PCD	7.44
PF04977	DivIC	2.48
PF13602	ADH_zinc_N_2	2.48
PF01757	Acyl_transf_3	1.65
PF08281	Sigma70_r4_2	0.83
PF02517	Rce1-like	0.83
PF01053	Cys_Met_Meta_PP	0.83
PF14534	DUF4440	0.83
PF02879	PGM_PMM_II	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG3503	Uncharacterized membrane protein, DUF1624 family	Function unknown [S]	69.42
COG2919	Cell division protein FtsB	Cell cycle control, cell division, chromosome partitioning [D]	2.48
COG4839	Cell division protein FtsL	Cell cycle control, cell division, chromosome partitioning [D]	2.48
COG0033	Phosphoglucomutase/phosphomannomutase	Carbohydrate transport and metabolism [G]	0.83
COG0075	Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG	Amino acid transport and metabolism [E]	0.83
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	0.83
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	0.83
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	0.83
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	0.83
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	0.83
COG1109	Phosphomannomutase	Carbohydrate transport and metabolism [G]	0.83
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	0.83
COG1921	Seryl-tRNA(Sec) selenium transferase	Translation, ribosomal structure and biogenesis [J]	0.83
COG1982	Arginine/lysine/ornithine decarboxylase	Amino acid transport and metabolism [E]	0.83
COG2008	Threonine aldolase	Amino acid transport and metabolism [E]	0.83
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	0.83
COG4100	Cystathionine beta-lyase family protein involved in aluminum resistance	Inorganic ion transport and metabolism [P]	0.83
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	0.83

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.17%
Host-Associated	Host-Associated	0.83%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.21%
Aquatic	Environmental → Aquatic	4.96%
Plants	Host-Associated → Plants	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.21%
Freshwater	Environmental → Aquatic → Freshwater	2.48%
Sediment	Environmental → Aquatic → Sediment	2.48%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	75.21%
Loam	Environmental → Terrestrial → Soil → Loam	13.22%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.79%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	34.71%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	20.66%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	19.01%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.92%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.79%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	3.31%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.48%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.65%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.83%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	26.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	14.05%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.05%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	6.61%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.13%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.13%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	3.31%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.48%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.65%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.65%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.65%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.65%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.83%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.83%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.83%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002909	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011444	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300020150	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_20_MG	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026277	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026315	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)	Environmental	Open in IMG/M
3300026316	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)	Environmental	Open in IMG/M
3300026317	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)	Environmental	Open in IMG/M
3300026333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental	Open in IMG/M
3300026527	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027070	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF004 (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028146	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK23	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1006952851	3300002245	Forest Soil	MLGLWAGLCLTGTFYAVWQGYGGRDFAATLTAFAFFFLVMLLFAARG
JGIcombinedJ26739_1012960251	3300002245	Forest Soil	MLGLWAGLCLTGTLYATWHGYGGRGFAATLTAFAFFFL
JGIcombinedJ26739_1016440601	3300002245	Forest Soil	MLGIGTALSFGGVLYASWLGYGGREFAATVTTFAFY
JGI25382J37095_101676682	3300002562	Grasslands Soil	MLGLWAVLTLTGALYSAWQGYGGRQFAATLTAFAFFFLVTLLFAARGVEDRLAS
JGI25388J43891_10056593	3300002909	Grasslands Soil	MLGLWAVLTLTGALYSAWQGYGGREFAATLTAFAFFFLVTLLFAARGVEDRL
JGI25388J43891_10188151	3300002909	Grasslands Soil	MLGLWAVLTLTGALYSAWQGYGGRQFAATLTAFAFFFLVTLLFAARGVE
JGI25617J43924_100647292	3300002914	Grasslands Soil	MLGLWAVLTLTGALYSAWLGYGGRAFAATLTAFAFFFLVMLLLAARGVENSIASRFG
Ga0062595_1004652181	3300004479	Soil	MLGLWAGMCLAGALYATWQGYGGRDFAATLTAFAFFFLVMLLFAARGVA
Ga0066672_103492821	3300005167	Soil	MVGLWAVLTLTGALYAAWQGYGGREFAATLTAFAFFFLVTLLFAARGIEDRLA
Ga0066677_100391054	3300005171	Soil	MLGLWALLTLIGVFFAVWKGYGGHEFAATLTSFAFLFLVMLLF
Ga0066679_102339591	3300005176	Soil	MLGLWAILTLTGVLYSVWQGYGGHEFAATLTAFAFFFLVTLLFAARGVE
Ga0066690_103275571	3300005177	Soil	MLGLWALLTLIGVLYAVWLGYGGHAFAATLTAFAFLFLLMLL
Ga0066671_108669481	3300005184	Soil	MLGLWALLTLIGVFFAVWKGYGGHEFAATLTSFAFLFLVMLL
Ga0066681_107732871	3300005451	Soil	MLGLWAILTLIGVLYAVWQGFGGPAFAATLTSFALLFLVMLLFAARGA
Ga0070733_106195472	3300005541	Surface Soil	MLGLWAGLCLVATFYATWHGYGGTEFAATLTAFSFYTLVMLMFAARGFG
Ga0066704_106736231	3300005557	Soil	MLGLWAVLTLTGALYSAWQGYGGREFAATLTAFAFFFLVTLLFAARGVEDRLASRFG
Ga0070763_103138832	3300005610	Soil	MIGLWAALTLTGTLYATWLGYGGRAFAATLTAFAFFFLVTLLFAARGM
Ga0070763_104343111	3300005610	Soil	MLGLWAGLCLVGALYSAWQGYGGRAFAATLTAFAFFFLM
Ga0066903_1068047952	3300005764	Tropical Forest Soil	MLGLWATLTLIGVFYAVWKGYSGHEFAATLTAFAF
Ga0070766_108134792	3300005921	Soil	MLGLWAGLCLTGTFYATWHGYGGRDFAATLTAFAFFLLV
Ga0075023_1001967962	3300006041	Watersheds	MLGLWAVLCFAGGLYASWQGYGGRDFAATLTAFAFFLGVMLLFAARGVVDFFSL
Ga0075029_1002507572	3300006052	Watersheds	MLGLWAALTLTGVLCSVWLGYGGRAFAATLTAFAFLFLVMLLFAARGVEDRL
Ga0070765_1007333102	3300006176	Soil	MLGCWAVLCLTGALYAAWQGYGGRDFAATLTVFAFFFLVMLLFAARG
Ga0066658_101051753	3300006794	Soil	MLGLWAVLTLTGALYSAWQGYGGREFAATLTAFAFFFL
Ga0066658_107684611	3300006794	Soil	MLALWAVLTLTAALYSAWLGYGGRALAATLTAFALLFLVMLLFAARGV
Ga0066660_105042472	3300006800	Soil	MLGLWAVLTLTGALYSAWQGYGGRQFAATLTAFAFFFLVTLLFA
Ga0075435_1005754792	3300007076	Populus Rhizosphere	MLGLWAILTLIGVLYAVWLGFGGPPFAATLTSFALLFLVMLLFAARGAETV
Ga0099791_103495371	3300007255	Vadose Zone Soil	MLGLWAALTLTGALYAAWLGYGGRGFAATLTAFAIFFLVMLLFAARGV
Ga0099793_100147573	3300007258	Vadose Zone Soil	MLGLWAVLTLTGVLYSVWQGYGGRGFAATLTAFAFFLLVTLLFAARGVE
Ga0099830_101165044	3300009088	Vadose Zone Soil	MLGLWAVLTLTGALYSTWLGYGGRAFAAILTAFAFFFLVMLLFAARGVD
Ga0099828_114408362	3300009089	Vadose Zone Soil	MLGLCAVLTLTGALYSVWQGYGGRAFAATLTAFAFFLLVMLLFAARGVEDRLAS
Ga0126383_121413101	3300010398	Tropical Forest Soil	MLGLWAILTLIGVLYAVWLGFGGHAFAATLTSFALLF
Ga0150983_119460072	3300011120	Forest Soil	MIGLWAALTLTGTLYATWLGYGGRAFAAMLTAFAFFFLVTLLFAARGMDDRLAARFGSSS
Ga0137392_101868951	3300011269	Vadose Zone Soil	LIGLWAVLTLAGALYSAWLGYGGRAFAATLTAFAFFFLVML
Ga0137392_110088142	3300011269	Vadose Zone Soil	MLGFWAVLTLTGALYSAWLGYGGRAFAATLTAFAFF
Ga0137463_11781081	3300011444	Soil	MLGLWATLTLAGALYASWLGYGGRGFAATLTAFAFFFLLMLLFAARGVA
Ga0137389_113613201	3300012096	Vadose Zone Soil	MLGLCAVLTLTGALYSVWQGYGGRAFAATLTAFAFFLLVMLLFAARGVEDRLASRFGA
Ga0137388_112343191	3300012189	Vadose Zone Soil	LIGLWAVLTLAGALYSTWLGYGGRAFAATLTAFAFFFLVML
Ga0137388_118584522	3300012189	Vadose Zone Soil	MLGVWAVLTLAGALYSSWLGYGGRAFAATLTAFAFFFLVMLLFAARGVENGLTA
Ga0137383_100825792	3300012199	Vadose Zone Soil	MLGLWAVLTLTGALFSAWLGYGGRAFAATLTAFAFFFLVMLLFAAR
Ga0137383_111154272	3300012199	Vadose Zone Soil	VTRQLGPLAMLGLWAVRTLAGALYASWLGYGGLAFAATLTAFAFFFLVMLLFAARGVE
Ga0137363_102569611	3300012202	Vadose Zone Soil	LIGLWAVLTLAGALYSTWLGYGGRAFAATLTAFAFFFLVMLLFAARGVEDNLTS
Ga0137363_103100411	3300012202	Vadose Zone Soil	MLGLWAALTLTGALYALWLGYGGRGFAATVTAFAIFFLVML
Ga0137362_101468741	3300012205	Vadose Zone Soil	MLALWAVLTLTAALYSAWLGYGGRAFAATLTAFAFLF
Ga0137378_117280162	3300012210	Vadose Zone Soil	VTRQLGPLAMLGVWAVLTLAGALYSSWLGYGGLAFAATLTAFAFFFLVMLLFAARGVEN
Ga0137361_103838841	3300012362	Vadose Zone Soil	VTRQLGPLAMLGVWAVLTLAGALYSSWLGYGGQAFAATLTAFAFFFLVMLLFAARGVEN
Ga0137390_100686191	3300012363	Vadose Zone Soil	MLGLGAVLTLTGALFSAWLGYGGRAFAATLTAFAFFFLVMLLFAAR
Ga0137398_104853831	3300012683	Vadose Zone Soil	MLGLWAVLTLAGVLYSVWLGYGGRAFAATLTAFAFFFLVMLL
Ga0137396_100939792	3300012918	Vadose Zone Soil	MLGLWAALCFGGGLYASWQGYGGRGFAATLTVFSFSSA*
Ga0137359_116346941	3300012923	Vadose Zone Soil	MLGLWAVLTLIGALFSAWLGYGGRAFAATLTAFAFFFLVMLL
Ga0137413_104408682	3300012924	Vadose Zone Soil	MLGLCAVLTLTGALYSAWQGYGGRAFAATLTAFAFFLLVMLLFAARGVEDR
Ga0137419_107825132	3300012925	Vadose Zone Soil	MLGVWAVLTLTGVLYSVWLGYGGRAFAATLTAFAFFFLVMLLFAARGVEDRLAAR
Ga0137404_109289871	3300012929	Vadose Zone Soil	MLGVWAVLTLTGVLYSVWLGYGGRAFAATLTAFAFFFLVMLL
Ga0164304_109859292	3300012986	Soil	MLGLWAALTLTGTLYAAWLGYGGRAFAATLTAFALLFLVMLLFAAR
Ga0134078_103865961	3300014157	Grasslands Soil	LAPARQLGLFSMLGLWAILTLIGVIYAVWLGFGGPAFAATLTSFALLFLVMLLFAARGAETVL
Ga0137405_11263331	3300015053	Vadose Zone Soil	MLGVWAVLTLTGVLYSVWLGYGGRAFAATLTAFAFFFLVMLLFAARGVE
Ga0134073_102263181	3300015356	Grasslands Soil	MLGLWAVLTLTGALFSAWLGYAGRAFAATLTAFAFFFLVML
Ga0187817_107648172	3300017955	Freshwater Sediment	MLGLWAVLTLAGALYSTWLGYGGREFAATLTAFSFFFLIML
Ga0187778_100110671	3300017961	Tropical Peatland	MLGLWAVLTLTGVIYSVWHGYGGREFASTLTASAF
Ga0187766_114199241	3300018058	Tropical Peatland	MFGLWAVLTLTGVIYSVWHGYGGREFASTLTASAFLFLVML
Ga0187772_100720404	3300018085	Tropical Peatland	MFGFWAVLTLTGVIYSVWHGYGGRDFASTLTAFAFLF
Ga0187769_100380335	3300018086	Tropical Peatland	MFGFWAVLTLTGVIYSVWHGYGGRDFASTLTAFAFLFLVMLLFAARGMDNG
Ga0187769_110325792	3300018086	Tropical Peatland	MFGFWAVLTLTGVIYSVWHGYGGRDFASTLTAFAFLFLVMLLFAARGMD
Ga0066662_121602142	3300018468	Grasslands Soil	MLGLWAVLTLTGALYSTWQGYGGREFAAALTAFAFFFFVTLLFAARGVE
Ga0187768_10489041	3300020150	Tropical Peatland	MFGLWAVLTLTGVIYSVWHGYGGREFASTLTASAFLFLVMLLFAA
Ga0179594_103848142	3300020170	Vadose Zone Soil	MLGLWAVLTLTGALYSTWQGYGGRAFAATLTAFAFFF
Ga0210407_110881801	3300020579	Soil	MVGLWAGLCLTGALYAAWQGYGGRDFAATLTVFAYFFLV
Ga0210403_103106212	3300020580	Soil	MLGLWAALCFGGGLYATWQGYGGRAFAATLTVFSFYFGVMLLFAAR
Ga0179596_101121961	3300021086	Vadose Zone Soil	MLGVWAVLTLTGVLYSVWLGYGGRAFAATLTAFAFFFLV
Ga0179596_106199831	3300021086	Vadose Zone Soil	LIGLWAVLTLAGALYSTWLGYGGRAFAATLTAFSFFFL
Ga0210404_103244631	3300021088	Soil	MLGLWAVLTLTGALYSAWLGYGGRAFAATLTAFAFFFLV
Ga0210404_106019872	3300021088	Soil	MLGLWAVLTLTGALYSAWLGYGGRAFAAALTAFAFFFLVMLLLAARGVEDRLAS
Ga0210406_107041831	3300021168	Soil	MLGLWAVLCLVGSGYSLWNGYGGRDFAATLTAFAFYFAVMLLFAARGVPDFLSSRF
Ga0210406_110881601	3300021168	Soil	MLGLWAGLCLTGTFYAVWQSYGGRDFAATLTAFAFFFLVMLLFAARGFAAGL
Ga0210400_103657202	3300021170	Soil	MLGLWAALCFGGGLYATWQGYGGRAFAATLTVFSFYFGVMLLFAARGVPEFL
Ga0210400_110649572	3300021170	Soil	MLGLWAVLCLVGSGYSLWNGYGGRDFAATLTAFAFYFAVMLL
Ga0210408_109299112	3300021178	Soil	MLGAWAALCFAGGLYATWQGYGGRDFAATLTAFAFFLGGM
Ga0210398_105438742	3300021477	Soil	MLGLWAGLCLTGTFYATWHGYGGREFAATLTAFAFFFLAMLL
Ga0210402_106011911	3300021478	Soil	MLGLWAGLCLTGTLYATWHGYGGRGFAATLTAFAF
Ga0210410_103592922	3300021479	Soil	MLGLWAALCFGGGLYATWQGYGGRAFAATLTVFSFYFGVMLL
Ga0210410_106591631	3300021479	Soil	VLGWWAGLCLTGALYAAWQGYGGRDFAATLTVFAFFFLV
Ga0210410_111606262	3300021479	Soil	MLGGWAGLCLTGALYAAWQGYGGRDFAATLTVFAFFFLVMLL
Ga0210409_114156512	3300021559	Soil	MLGLWAVLTLTGALYSAWLGYGGRAFAATLTAFAF
Ga0126371_101740691	3300021560	Tropical Forest Soil	MLGLWAILTLIGVLYAVWLGSGGPAFAATLTSFALLFL
Ga0126371_123419772	3300021560	Tropical Forest Soil	MLGLWAILTLIGVLYAVWLGFGGHAFAATLTTFAFLFLIMLLFAA
Ga0137417_10928722	3300024330	Vadose Zone Soil	MLGLWAVLTLTGALYSAWLGYGGRAFAATLTAFSFFFLV
Ga0209350_10341821	3300026277	Grasslands Soil	MLGLWAVLTLTGALYSAWQGYGGRQFAATLTAFAFFFLVTLLFAARGVEDRLA
Ga0209236_12001241	3300026298	Grasslands Soil	MLGLWAVLTLTGALFSAWLGYGGRAFAATLTAFAFFLLVMLLFAARGMESS
Ga0209055_10116678	3300026309	Soil	MLALWAVLTLTAALYSAWLGYGGRALAATLTAFALLFL
Ga0209686_10480623	3300026315	Soil	MLGLWALLTLIGVFFAVWKGYGGHEFAATLTSFAFLFLVMLLFAA
Ga0209155_10427801	3300026316	Soil	MLALWAVLTLTAALYAVWLGYGGRAFAATLTAFAFL
Ga0209155_12989691	3300026316	Soil	MLGLWAILTLTGMLYSVWLGYSGRAYAATLTAFAFLFLIMLLFAARGVETSLAT
Ga0209154_13229572	3300026317	Soil	MLALWAVLTLTAALYSAWLGYGGRALAATLTAFALLFLVMLLFA
Ga0209158_12781731	3300026333	Soil	MLGLWAVLTLTGALYAVWQGYGGREFAASLTAFAFFFLVTLLFAARGVEDRLA
Ga0209377_12306221	3300026334	Soil	MLGLWAALTLTGALYAAWLGYGGRGFAATLTAFAIFFLVMLLFAARGVPE
Ga0209057_11994201	3300026342	Soil	MLGLWAILTLIGVLYAVWQGFGGPAFAATLTSFALLFLVMLLFAARGAETVLAARFGATTGH
Ga0209059_11723782	3300026527	Soil	MLALWAVLTLTGALYSAWLGYGGRAFAATLTAFAFFFLVMLLF
Ga0209648_101332524	3300026551	Grasslands Soil	MLGLWAVLTLTGALYSAWQGYGGRAFAATLTAFAF
Ga0209577_101294464	3300026552	Soil	MLGLWALLTLIGVLYAVWLGYGGHAFAATLTAFAFLFLLMLLFAARGAETSLAARFS
Ga0209577_105201771	3300026552	Soil	MLGLWALLTLIGVFFAVWKGYGGHEFAATLTSFAFLFLVMLLFAARGAETILATR
Ga0208365_10300171	3300027070	Forest Soil	MLGLWAVLTLTGALYSAWLGNGGRAFAATFTAFAFLFLVTLLFAARGFEDRLASRFGA
Ga0209248_102499042	3300027729	Bog Forest Soil	MLGLWAGLCLTGTFYATWHGYGGREFAATLTAFAFFFLV
Ga0209773_102837391	3300027829	Bog Forest Soil	MLGLWAGLCLTAALYAAWQGYGGRAFAATLTAFALFL
Ga0209580_104767542	3300027842	Surface Soil	MIGLWAVLCFAGALYASWQGYGGREFAATLTVFAIYLGVMLLFAA
Ga0209180_102755031	3300027846	Vadose Zone Soil	MLGLWAVLTLTGALYSAWLGYGGRAFAATLTAFAFFFLVML
Ga0209693_101998281	3300027855	Soil	MIGLWAALTLTGTLYATWLGYGGRAFAATLTAFAFFFLVTLLFAARGMDDRL
Ga0209701_100043199	3300027862	Vadose Zone Soil	MLGLWAALTLTGALYSLWLGYGGRAFAATLTAFAFF
Ga0209701_101131143	3300027862	Vadose Zone Soil	MLGLWAVLTLTGALYSAWLGYGGRAFAATLTAFAFFFLVT
Ga0209701_105596321	3300027862	Vadose Zone Soil	MFGLWAVLTLTGALYSVWLGYGGRDFAATLTAFAFYFLVM
Ga0209526_103203813	3300028047	Forest Soil	MLGLWAGLCLTGTLYATWHGYGGRGFAATLTAFAFFFLVMLL
Ga0247682_10438582	3300028146	Soil	MLGLWAGMCLAGALYATWQGYGGRDFAATLTAFAFF
Ga0307504_103432021	3300028792	Soil	MVGLWAALTLTGALYALWLGYGGRSFAATLTAFAFFFLV
Ga0222749_102864371	3300029636	Soil	MLGLWSALTLTGALYASWLGYGGRGFAATLTAFAFFFLVILLF
Ga0306917_100220951	3300031719	Soil	MLGLWALLTLIGVFFALWKGYGGHAFAATLTAFAF
Ga0307469_104747201	3300031720	Hardwood Forest Soil	MLGLWAALTLTGALYAAWLGYGGRGFAATLTAFAIFFLVMLLFAAR
Ga0307469_112181942	3300031720	Hardwood Forest Soil	MLGLWAGMCLAGALYATWQGYGGRDFAATLTTFAFFFLVML
Ga0307475_103644582	3300031754	Hardwood Forest Soil	MLGVWAVLTLTGVLYSAWLGYGGRAFAAALTAFAF
Ga0307475_105059612	3300031754	Hardwood Forest Soil	VLGLWAVLTLTGVLYSAWLGYGGRAFAAALTAFAFFFLVM
Ga0311301_102293031	3300032160	Peatlands Soil	MLGLWSALTLTGALYASWLGYGGRAFAATLQAVAV
Ga0307472_1020960312	3300032205	Hardwood Forest Soil	MLGLWAILTLIGVLYAVWLGFGGPPFAATLTSFAL
Ga0335076_109989171	3300032955	Soil	MLGLWAGLCLTGMFYSAWQGYGGRDFGATLTAFAFLFLVMLLFAARGVAEALASRFG

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.64
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.64
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F072548

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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