Metagenome / Metatranscriptome Family F072553

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F072553
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	46 residues
Representative Sequence	MIFSDLPSPAEASSQTTNRAKGFAQAGNRYPPRIKSGAGFFGIMR
Number of Associated Samples	88
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	33.06 %
% of genes near scaffold ends (potentially truncated)	45.45 %
% of genes from short scaffolds (< 2000 bps)	87.60 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.20

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (80.992 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (12.397 % of family members)
Environment Ontology (ENVO)	Unclassified (23.967 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (61.983 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 5.48% β-sheet: 0.00% Coil/Unstructured: 94.52%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.20
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.20
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF02653	BPD_transp_2	4.13
PF00296	Bac_luciferase	3.31
PF00912	Transgly	2.48
PF02606	LpxK	2.48
PF00528	BPD_transp_1	2.48
PF03602	Cons_hypoth95	2.48
PF01925	TauE	1.65
PF03480	DctP	1.65
PF00156	Pribosyltran	1.65
PF00005	ABC_tran	1.65
PF00857	Isochorismatase	1.65
PF00557	Peptidase_M24	1.65
PF00378	ECH_1	1.65
PF00749	tRNA-synt_1c	1.65
PF00753	Lactamase_B	1.65
PF00034	Cytochrom_C	1.65
PF07811	TadE	1.65
PF12847	Methyltransf_18	0.83
PF07331	TctB	0.83
PF00775	Dioxygenase_C	0.83
PF00155	Aminotran_1_2	0.83
PF13586	DDE_Tnp_1_2	0.83
PF02233	PNTB	0.83
PF01183	Glyco_hydro_25	0.83
PF03989	DNA_gyraseA_C	0.83
PF01053	Cys_Met_Meta_PP	0.83
PF02355	SecD_SecF	0.83
PF06144	DNA_pol3_delta	0.83
PF01625	PMSR	0.83
PF01098	FTSW_RODA_SPOVE	0.83
PF13193	AMP-binding_C	0.83
PF13378	MR_MLE_C	0.83
PF01370	Epimerase	0.83
PF01351	RNase_HII	0.83
PF03652	RuvX	0.83
PF01037	AsnC_trans_reg	0.83
PF01668	SmpB	0.83
PF04055	Radical_SAM	0.83
PF13183	Fer4_8	0.83
PF09459	EB_dh	0.83
PF01040	UbiA	0.83
PF02698	DUF218	0.83
PF13377	Peripla_BP_3	0.83
PF01479	S4	0.83
PF14602	Hexapep_2	0.83
PF09898	DUF2125	0.83
PF03960	ArsC	0.83
PF00565	SNase	0.83
PF04452	Methyltrans_RNA	0.83
PF00909	Ammonium_transp	0.83
PF07992	Pyr_redox_2	0.83
PF00043	GST_C	0.83
PF04107	GCS2	0.83
PF07045	DUF1330	0.83
PF01842	ACT	0.83
PF08450	SGL	0.83
PF01227	GTP_cyclohydroI	0.83
PF11239	DUF3040	0.83
PF08299	Bac_DnaA_C	0.83
PF01381	HTH_3	0.83
PF01923	Cob_adeno_trans	0.83
PF07883	Cupin_2	0.83
PF08240	ADH_N	0.83
PF04390	LptE	0.83
PF13277	YmdB	0.83
PF05681	Fumerase	0.83
PF03099	BPL_LplA_LipB	0.83
PF03702	AnmK	0.83
PF00383	dCMP_cyt_deam_1	0.83
PF01243	Putative_PNPOx	0.83
PF14561	TPR_20	0.83
PF11737	DUF3300	0.83
PF01027	Bax1-I	0.83
PF13404	HTH_AsnC-type	0.83
PF03330	DPBB_1	0.83
PF13365	Trypsin_2	0.83
PF03466	LysR_substrate	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	3.31
COG0742	16S rRNA G966 N2-methylase RsmD	Translation, ribosomal structure and biogenesis [J]	2.48
COG0744	Penicillin-binding protein 1B/1F, peptidoglycan transglycosylase/transpeptidase	Cell wall/membrane/envelope biogenesis [M]	2.48
COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	Translation, ribosomal structure and biogenesis [J]	2.48
COG1663	Tetraacyldisaccharide-1-P 4'-kinase (Lipid A 4'-kinase)	Cell wall/membrane/envelope biogenesis [M]	2.48
COG2242	Precorrin-6B methylase 2	Coenzyme transport and metabolism [H]	2.48
COG2265	tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family	Translation, ribosomal structure and biogenesis [J]	2.48
COG2890	Methylase of polypeptide chain release factors	Translation, ribosomal structure and biogenesis [J]	2.48
COG4953	Membrane carboxypeptidase/penicillin-binding protein PbpC	Cell wall/membrane/envelope biogenesis [M]	2.48
COG5009	Membrane carboxypeptidase/penicillin-binding protein	Cell wall/membrane/envelope biogenesis [M]	2.48
COG0008	Glutamyl- or glutaminyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	1.65
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	1.65
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	1.65
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.65
COG0004	Ammonia channel protein AmtB	Inorganic ion transport and metabolism [P]	0.83
COG0075	Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG	Amino acid transport and metabolism [E]	0.83
COG0095	Lipoate-protein ligase A	Coenzyme transport and metabolism [H]	0.83
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	0.83
COG0164	Ribonuclease HII	Replication, recombination and repair [L]	0.83
COG0188	DNA gyrase/topoisomerase IV, subunit A	Replication, recombination and repair [L]	0.83
COG0225	Peptide methionine sulfoxide reductase MsrA	Posttranslational modification, protein turnover, chaperones [O]	0.83
COG0321	Lipoate-protein ligase B	Coenzyme transport and metabolism [H]	0.83
COG0340	Biotin-protein ligase	Coenzyme transport and metabolism [H]	0.83
COG0341	Preprotein translocase subunit SecF	Intracellular trafficking, secretion, and vesicular transport [U]	0.83
COG0342	Preprotein translocase subunit SecD	Intracellular trafficking, secretion, and vesicular transport [U]	0.83
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	0.83
COG0435	Glutathionyl-hydroquinone reductase	Energy production and conversion [C]	0.83
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	0.83
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	0.83
COG0593	Chromosomal replication initiation ATPase DnaA	Replication, recombination and repair [L]	0.83
COG0625	Glutathione S-transferase	Posttranslational modification, protein turnover, chaperones [O]	0.83
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	0.83
COG0691	tmRNA-binding protein	Posttranslational modification, protein turnover, chaperones [O]	0.83
COG0772	Peptodoglycan polymerase FtsW/RodA/SpoVE	Cell cycle control, cell division, chromosome partitioning [D]	0.83
COG0816	YqgF/RuvX protein, pre-16S rRNA maturation RNase/Holliday junction resolvase/anti-termination factor	Translation, ribosomal structure and biogenesis [J]	0.83
COG1039	Ribonuclease HIII	Replication, recombination and repair [L]	0.83
COG1282	NAD/NADP transhydrogenase beta subunit	Energy production and conversion [C]	0.83
COG1385	16S rRNA U1498 N3-methylase RsmE	Translation, ribosomal structure and biogenesis [J]	0.83
COG1393	Arsenate reductase or related protein, glutaredoxin family	Inorganic ion transport and metabolism [P]	0.83
COG1434	Lipid carrier protein ElyC involved in cell wall biogenesis, DUF218 family	Cell wall/membrane/envelope biogenesis [M]	0.83
COG1466	DNA polymerase III, delta subunit	Replication, recombination and repair [L]	0.83
COG1921	Seryl-tRNA(Sec) selenium transferase	Translation, ribosomal structure and biogenesis [J]	0.83
COG1951	Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain	Energy production and conversion [C]	0.83
COG1982	Arginine/lysine/ornithine decarboxylase	Amino acid transport and metabolism [E]	0.83
COG2008	Threonine aldolase	Amino acid transport and metabolism [E]	0.83
COG2377	1,6-Anhydro-N-acetylmuramate kinase	Cell wall/membrane/envelope biogenesis [M]	0.83
COG2812	DNA polymerase III, gamma/tau subunits	Replication, recombination and repair [L]	0.83
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	0.83
COG2949	Uncharacterized periplasmic protein SanA, affects membrane permeability for vancomycin	Cell wall/membrane/envelope biogenesis [M]	0.83
COG2980	Outer membrane lipoprotein LptE/RlpB (LPS assembly)	Cell wall/membrane/envelope biogenesis [M]	0.83
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	0.83
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	0.83
COG3485	Protocatechuate 3,4-dioxygenase beta subunit	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.83
COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	Cell wall/membrane/envelope biogenesis [M]	0.83
COG4100	Cystathionine beta-lyase family protein involved in aluminum resistance	Inorganic ion transport and metabolism [P]	0.83
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	81.82 %
Unclassified	root	N/A	18.18 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	81.82 %
Unclassified	root	N/A	18.18 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	80.99 %
Unclassified	root	N/A	18.18 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.83 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	68.60 %
Unclassified	root	N/A	18.18 %
Nitrospinae/Tectomicrobia group	clade	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group	0.83 %
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	0.83 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	57.02 %
Unclassified	root	N/A	18.18 %
Nitrospinae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae	0.83 %
Alveolata	clade	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata	0.83 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	38.02 %
Unclassified	root	N/A	18.18 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	4.13 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.65 %
unclassified Nitrospinota	no rank	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae → unclassified Nitrospinota	0.83 %
Dinophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.18 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	10.74 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	4.96 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.13 %
Nitrospinae bacterium SCGC AAA008-D05	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae → unclassified Nitrospinota → Nitrospinae bacterium SCGC AAA008-D05	0.83 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	0.83 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.83 %
Suessiales	order	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	0.83 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	0.83 %
Blastochloridaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Blastochloridaceae	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.18 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	4.13 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.13 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.13 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.83 %
Rhodospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	0.83 %
Blastochloris	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Blastochloridaceae → Blastochloris	0.83 %
Symbiodiniaceae	family	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae	0.83 %
Nitrospinae bacterium SCGC AAA008-D05	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae → unclassified Nitrospinota → Nitrospinae bacterium SCGC AAA008-D05	0.83 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.18 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	4.13 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.13 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.65 %
Symbiodinium	genus	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	0.83 %
Blastochloris sulfoviridis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Blastochloridaceae → Blastochloris → Blastochloris sulfoviridis	0.83 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.83 %
Rhodospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	0.83 %
Nitrospinae bacterium SCGC AAA008-D05	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae → unclassified Nitrospinota → Nitrospinae bacterium SCGC AAA008-D05	0.83 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.18 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.13 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	3.31 %
Rhodoplanes sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp.	0.83 %
Bradyrhizobium sp. AUGA SZCCT0182	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AUGA SZCCT0182	0.83 %
Symbiodinium microadriaticum	species	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	0.83 %
Bradyrhizobium sp. C-145	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. C-145	0.83 %
Blastochloris sulfoviridis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Blastochloridaceae → Blastochloris → Blastochloris sulfoviridis	0.83 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.83 %
Rhodospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	0.83 %
Nitrospinae bacterium SCGC AAA008-D05	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae → unclassified Nitrospinota → Nitrospinae bacterium SCGC AAA008-D05	0.83 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001402\|JGI20195J14853_1038898	Not Available	654	Open in IMG/M
3300002245\|JGIcombinedJ26739_100023708	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5329	Open in IMG/M
3300002245\|JGIcombinedJ26739_100088074	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2894	Open in IMG/M
3300003321\|soilH1_10218729	All Organisms → cellular organisms → Bacteria → Proteobacteria	2842	Open in IMG/M
3300005167\|Ga0066672_10975141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	519	Open in IMG/M
3300005171\|Ga0066677_10782745	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	529	Open in IMG/M
3300005178\|Ga0066688_10774224	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300005187\|Ga0066675_10827334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	700	Open in IMG/M
3300005332\|Ga0066388_100448017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1933	Open in IMG/M
3300005332\|Ga0066388_100505714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1844	Open in IMG/M
3300005332\|Ga0066388_101553245	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1161	Open in IMG/M
3300005332\|Ga0066388_103576357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	793	Open in IMG/M
3300005332\|Ga0066388_105163479	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	663	Open in IMG/M
3300005332\|Ga0066388_106404579	Not Available	594	Open in IMG/M
3300005332\|Ga0066388_107338266	Not Available	554	Open in IMG/M
3300005434\|Ga0070709_11544886	Not Available	540	Open in IMG/M
3300005529\|Ga0070741_10001765	All Organisms → cellular organisms → Bacteria → Proteobacteria	62594	Open in IMG/M
3300005543\|Ga0070672_100625983	All Organisms → cellular organisms → Bacteria	939	Open in IMG/M
3300005554\|Ga0066661_10189093	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1272	Open in IMG/M
3300005560\|Ga0066670_10179708	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1259	Open in IMG/M
3300005561\|Ga0066699_10916223	All Organisms → cellular organisms → Bacteria → Proteobacteria	611	Open in IMG/M
3300005764\|Ga0066903_100532533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	2006	Open in IMG/M
3300005764\|Ga0066903_102523890	All Organisms → cellular organisms → Bacteria → Proteobacteria	995	Open in IMG/M
3300005764\|Ga0066903_104548635	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	739	Open in IMG/M
3300005764\|Ga0066903_108885742	Not Available	509	Open in IMG/M
3300006028\|Ga0070717_10158055	All Organisms → cellular organisms → Bacteria → Proteobacteria	1965	Open in IMG/M
3300006031\|Ga0066651_10385352	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	749	Open in IMG/M
3300006176\|Ga0070765_100408927	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1268	Open in IMG/M
3300006755\|Ga0079222_10243747	All Organisms → cellular organisms → Bacteria	1123	Open in IMG/M
3300006794\|Ga0066658_10728854	Not Available	551	Open in IMG/M
3300006893\|Ga0073928_10324746	All Organisms → cellular organisms → Bacteria	1148	Open in IMG/M
3300006903\|Ga0075426_10439037	All Organisms → cellular organisms → Bacteria → Proteobacteria	966	Open in IMG/M
3300006903\|Ga0075426_10733686	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	742	Open in IMG/M
3300006914\|Ga0075436_100339034	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1082	Open in IMG/M
3300009029\|Ga0066793_10391649	Not Available	798	Open in IMG/M
3300009156\|Ga0111538_11108373	Not Available	1001	Open in IMG/M
3300010048\|Ga0126373_12027570	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	638	Open in IMG/M
3300010366\|Ga0126379_11737970	Not Available	728	Open in IMG/M
3300010366\|Ga0126379_11884481	Not Available	701	Open in IMG/M
3300010366\|Ga0126379_12313963	Not Available	637	Open in IMG/M
3300010379\|Ga0136449_101699249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	951	Open in IMG/M
3300010398\|Ga0126383_10191353	All Organisms → cellular organisms → Bacteria	1955	Open in IMG/M
3300011120\|Ga0150983_11788538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	863	Open in IMG/M
3300012206\|Ga0137380_10840141	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300012210\|Ga0137378_10944964	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	775	Open in IMG/M
3300012210\|Ga0137378_11079692	Not Available	717	Open in IMG/M
3300012210\|Ga0137378_11529278	Not Available	578	Open in IMG/M
3300012922\|Ga0137394_11283913	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	595	Open in IMG/M
3300012971\|Ga0126369_10644711	Not Available	1133	Open in IMG/M
3300012985\|Ga0164308_11887795	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	557	Open in IMG/M
3300013307\|Ga0157372_11952288	Not Available	675	Open in IMG/M
3300013770\|Ga0120123_1106898	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300014969\|Ga0157376_11990071	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	619	Open in IMG/M
3300015264\|Ga0137403_11493518	All Organisms → cellular organisms → Bacteria → Proteobacteria	526	Open in IMG/M
3300017928\|Ga0187806_1062564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1146	Open in IMG/M
3300017932\|Ga0187814_10047129	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1588	Open in IMG/M
3300017959\|Ga0187779_10721179	All Organisms → cellular organisms → Bacteria → Proteobacteria	675	Open in IMG/M
3300017975\|Ga0187782_10339257	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1137	Open in IMG/M
3300017975\|Ga0187782_10345214	Not Available	1126	Open in IMG/M
3300017975\|Ga0187782_10376158	Not Available	1077	Open in IMG/M
3300017975\|Ga0187782_10408250	All Organisms → cellular organisms → Bacteria → Proteobacteria	1033	Open in IMG/M
3300017975\|Ga0187782_10723215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	768	Open in IMG/M
3300017975\|Ga0187782_10834671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	713	Open in IMG/M
3300017975\|Ga0187782_10854459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	705	Open in IMG/M
3300018062\|Ga0187784_10002561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	14576	Open in IMG/M
3300018062\|Ga0187784_11314751	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	573	Open in IMG/M
3300018085\|Ga0187772_10186721	All Organisms → cellular organisms → Bacteria → Proteobacteria	1387	Open in IMG/M
3300018086\|Ga0187769_10991765	Not Available	636	Open in IMG/M
3300018088\|Ga0187771_10895797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	752	Open in IMG/M
3300018468\|Ga0066662_11354447	All Organisms → cellular organisms → Bacteria → Proteobacteria	733	Open in IMG/M
3300018468\|Ga0066662_11805494	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300019284\|Ga0187797_1393605	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	978	Open in IMG/M
3300019888\|Ga0193751_1000038	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	112858	Open in IMG/M
3300020581\|Ga0210399_10913353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	711	Open in IMG/M
3300021088\|Ga0210404_10591933	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	630	Open in IMG/M
3300021170\|Ga0210400_10211489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1579	Open in IMG/M
3300021171\|Ga0210405_11162651	Not Available	574	Open in IMG/M
3300021374\|Ga0213881_10161582	All Organisms → cellular organisms → Bacteria	983	Open in IMG/M
3300021384\|Ga0213876_10017517	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3783	Open in IMG/M
3300021384\|Ga0213876_10246402	All Organisms → cellular organisms → Bacteria	950	Open in IMG/M
3300021384\|Ga0213876_10273424	All Organisms → cellular organisms → Bacteria → Proteobacteria	898	Open in IMG/M
3300021384\|Ga0213876_10357653	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	777	Open in IMG/M
3300021388\|Ga0213875_10504886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	581	Open in IMG/M
3300021388\|Ga0213875_10613187	Not Available	526	Open in IMG/M
3300021432\|Ga0210384_10326891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1381	Open in IMG/M
3300021476\|Ga0187846_10044686	All Organisms → cellular organisms → Bacteria	1972	Open in IMG/M
3300021559\|Ga0210409_11333712	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	593	Open in IMG/M
3300022531\|Ga0242660_1219413	Not Available	530	Open in IMG/M
3300022557\|Ga0212123_10276477	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. C-145	1188	Open in IMG/M
3300025320\|Ga0209171_10125567	All Organisms → cellular organisms → Bacteria → Proteobacteria	1533	Open in IMG/M
3300025926\|Ga0207659_11187207	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	656	Open in IMG/M
3300025939\|Ga0207665_10222907	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1382	Open in IMG/M
3300025940\|Ga0207691_10001869	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	20575	Open in IMG/M
3300026121\|Ga0207683_10115510	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2406	Open in IMG/M
3300026317\|Ga0209154_1034892	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2296	Open in IMG/M
3300026317\|Ga0209154_1283645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	551	Open in IMG/M
3300026550\|Ga0209474_10034426	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3759	Open in IMG/M
3300026552\|Ga0209577_10603257	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	658	Open in IMG/M
3300027099\|Ga0208726_103833	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	501	Open in IMG/M
3300027521\|Ga0209524_1117559	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300027537\|Ga0209419_1061516	All Organisms → cellular organisms → Bacteria	734	Open in IMG/M
3300027605\|Ga0209329_1020294	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1337	Open in IMG/M
3300027605\|Ga0209329_1025472	All Organisms → cellular organisms → Bacteria → Proteobacteria	1210	Open in IMG/M
3300027727\|Ga0209328_10074209	All Organisms → cellular organisms → Bacteria	1041	Open in IMG/M
3300029636\|Ga0222749_10041727	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1995	Open in IMG/M
3300029636\|Ga0222749_10059680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1706	Open in IMG/M
3300029636\|Ga0222749_10383540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	742	Open in IMG/M
3300031543\|Ga0318516_10000009	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	34094	Open in IMG/M
3300031573\|Ga0310915_11287024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AUGA SZCCT0182	504	Open in IMG/M
3300031718\|Ga0307474_10609072	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	861	Open in IMG/M
3300031744\|Ga0306918_10049813	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2775	Open in IMG/M
3300031754\|Ga0307475_10794600	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	751	Open in IMG/M
3300031754\|Ga0307475_11507358	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Blastochloridaceae → Blastochloris → Blastochloris sulfoviridis	516	Open in IMG/M
3300031819\|Ga0318568_10642939	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	660	Open in IMG/M
3300031821\|Ga0318567_10005346	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	5604	Open in IMG/M
3300031962\|Ga0307479_11866699	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae → unclassified Nitrospinota → Nitrospinae bacterium SCGC AAA008-D05	552	Open in IMG/M
3300032163\|Ga0315281_11711861	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	609	Open in IMG/M
3300032892\|Ga0335081_12516421	Not Available	531	Open in IMG/M
3300033158\|Ga0335077_10984293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	843	Open in IMG/M
3300033158\|Ga0335077_12044251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	531	Open in IMG/M
3300033290\|Ga0318519_10529032	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp.	712	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	86.78%
Host-Associated	Host-Associated	13.22%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.82%
Plants	Host-Associated → Plants	13.22%
Aquatic	Environmental → Aquatic	4.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	80.17%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.44%
Roots	Host-Associated → Plants → Roots	4.96%
Freshwater	Environmental → Aquatic → Freshwater	2.48%
Thermal Springs	Environmental → Aquatic → Thermal Springs	2.48%
Cave	Environmental → Terrestrial → Cave	0.83%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.83%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	44.63%
Loam	Environmental → Terrestrial → Soil → Loam	20.66%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	14.88%
Unclassified	Host-Associated → Plants → Roots → Unclassified	4.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.96%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	2.48%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.48%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.65%
Lake	Environmental → Aquatic → Freshwater → Lake	0.83%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.83%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.83%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.83%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	17.36%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	16.53%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	14.05%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.22%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	11.57%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	4.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.96%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	2.48%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.48%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.65%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.65%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.65%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.83%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.83%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.83%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.83%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.40%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	10.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	9.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	9.09%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	7.44%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.96%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	4.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.31%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.31%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	2.48%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.48%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.48%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.48%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.65%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.65%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.83%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.83%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.83%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.83%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.83%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.83%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.83%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.83%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.83%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001402	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 deep-092012	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003321	Sugarcane bulk soil Sample H1	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013770	Permafrost microbial communities from Nunavut, Canada - A15_5cm_18M	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019284	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021374	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R08	Environmental	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300021388	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8	Host-Associated	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300025320	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG (SPAdes)	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026317	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027099	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF026 (SPAdes)	Environmental	Open in IMG/M
3300027521	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027537	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027605	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032163	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI20195J14853_10388982	3300001402	Arctic Peat Soil	MIFPDLPSPAEAGFAKAGNRSPSRIKSGTGFFGITLKNESTPIMTGEPAGLR*
JGIcombinedJ26739_1000237083	3300002245	Forest Soil	MIFSDLPSPAEASSQMTEQLQGFAQAGNRSPPRIKCGAGFFGIMV*
JGIcombinedJ26739_1000880743	3300002245	Forest Soil	MSMIFSDLPTPAEALVHTTRTCQGFAQAGNRFPPWIKSGAGFFGIIL*
soilH1_102187292	3300003321	Sugarcane Root And Bulk Soil	MILSDLPSPAEALVHAKGSCQGFAQAGNRFTPRIASGAGFFGIMR*
Ga0066672_109751412	3300005167	Soil	MIFSDLPSPAEAPSQTAISAMGFAQAGNRYPPRIKCGASFFGIML
Ga0066677_107827452	3300005171	Soil	MIFSDLPSPAEASSQTTNRAKGFAQAGNRYPPRIKSGAGFFGIMR*
Ga0066688_107742241	3300005178	Soil	WSMIFSDLPSPAEASSQTMSGARGFAQAGNRCPPRIKCGAGFFGIML*
Ga0066675_108273341	3300005187	Soil	MRLRMILSDLPSPAEASGRVKNAGQGFAQAGNRYPPRIKSGAGFFGIMH
Ga0066388_1004480173	3300005332	Tropical Forest Soil	MIFSDLPSPAEASSQTTNRAKGFAQAGNRYPPRIESGVGFFGIML*
Ga0066388_1005057144	3300005332	Tropical Forest Soil	MIFSDLPSPAEASSHTTDGAKGFAQAGNRLPPLIKSGAGFFGIML*
Ga0066388_1015532453	3300005332	Tropical Forest Soil	MIFSDLPPPAEASSHTTDRAKGFAQAGNRYPPRLKAGAGFS
Ga0066388_1035763572	3300005332	Tropical Forest Soil	MIFSDLPSPAEALSHTVGLCKGFAQAGNRCPPRIKCGAGFFG
Ga0066388_1051634792	3300005332	Tropical Forest Soil	MIFSDLPSPAEASALERRQRQGFAQAGNRFTPRIECGAGFFGIMLEERMR*
Ga0066388_1064045791	3300005332	Tropical Forest Soil	MIFPDLPSPAEALSQRIGCAKGFAQAGNRFPPRIKCGAGF
Ga0066388_1073382661	3300005332	Tropical Forest Soil	MIFSDLPSPAEASSQVKVSSQGFAQAGNRYPPRIKSGAGFFGIM
Ga0070709_115448862	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MIFSDLPSPAEASSPKGEFAKGFAQAGNRYPPRIGCGAGFFGIML*
Ga0070741_1000176540	3300005529	Surface Soil	MILSDLPSPAEASSNTRGLAVGFAQAGNRNPPRIKSGAGFFGIMR*
Ga0070672_1006259832	3300005543	Miscanthus Rhizosphere	MIFSDLPSPAEASILNRRQCQGFAQAGNRYPSRVKPGTCFLGIMR*
Ga0066661_101890933	3300005554	Soil	LRMIFSDLPSPAEAPSYTNEPWQGFAQAGNRYPPRIKYRAGFFGIMHYTA*
Ga0066670_101797082	3300005560	Soil	MRLRMILSDLPSPAEASGRVKNAGQGFAQAGNRYPPRIKSGAGFFGITR*
Ga0066699_109162231	3300005561	Soil	MIFPDLASPAEASSQTTNGAKGFAQAGNRYPPRIKCGAGFFGIML
Ga0066903_1005325332	3300005764	Tropical Forest Soil	MIFSDLPSPAETSSQMMKRGMGFAQAGNRFPPRIKCGAGFFGIMLEMRTCLRERSIS*
Ga0066903_1025238902	3300005764	Tropical Forest Soil	MIFSDLPSPAEASGQTTIGATGFAQAENRFPPRIKCGAGFFGIMR*
Ga0066903_1045486352	3300005764	Tropical Forest Soil	MIFSDLPSPAEASSHTTDRAKGFAQAGNRYPPRVKPGAGFFGIVL*
Ga0066903_1088857422	3300005764	Tropical Forest Soil	MIFSDLPSPAEASSGPKSGYQGFAQAGNRHPPRIASRAGFFGIVL*
Ga0070717_101580551	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MIFSDLPSPAEASIQTTKRAEGFAQAGNRFPPRIKCGAGFFGIMR
Ga0066651_103853521	3300006031	Soil	PAEASNESRGRSLGFAQAGNRDPPRIKSGAGFFGIML*
Ga0070765_1004089271	3300006176	Soil	MIFSDLPSPAEAPGQMTSPYQGFAQAGNRYPPRIKSGAGF
Ga0079222_102437472	3300006755	Agricultural Soil	MRLRMILSDLPSPAEASNQPASGGRGFAQAGNRRPPRIKSGAGFFGIMR*
Ga0066658_107288541	3300006794	Soil	MIFSDLPSPAEASDESANGYQSFAQAGNRPPARIRSGPGFFGIMLEMKTPRA*
Ga0073928_103247461	3300006893	Iron-Sulfur Acid Spring	MIFSDLPSPAEASSRMPNQATGFAQVENRYTPPIGSGQAFSDHAFVHSA*
Ga0075426_104390371	3300006903	Populus Rhizosphere	LSMILSDLPSPAEASSQMAGHTKGFAQAGNRYPPRIKCGAGFFGIML
Ga0075426_107336861	3300006903	Populus Rhizosphere	YCWSMMFSDLPSPAEASSQMNEPSRGFAQAGNRYPPRIKSGAGFFGIMR*
Ga0075436_1003390342	3300006914	Populus Rhizosphere	MILSDLPSPAEAPSYTNEPWQGFAQAGNRYPPRIKYRAGFFGIMRYPA*
Ga0066793_103916492	3300009029	Prmafrost Soil	FESESDPNILLSALIFSDLPSPAEAGFAKAENRFPPRIKSGAGFFGIIR*
Ga0111538_111083733	3300009156	Populus Rhizosphere	MIFSDLPPPAEALIHARGACQGFAQAGNRCPPRIKSGAGFFGIMRI
Ga0126373_120275702	3300010048	Tropical Forest Soil	MIFSDLPSPAEASSQMSKLSQGFAQAGNPHPPRITCGAGFFGIML*
Ga0126379_117379701	3300010366	Tropical Forest Soil	MIFSDLPSPAEASSRMKGWLGGFAQAGNRCTPRITSGAGFF
Ga0126379_118844811	3300010366	Tropical Forest Soil	SDLPSPAEASSHTTDRAKGFAQAGNRYPPRVKPGAGFFGIVL*
Ga0126379_123139633	3300010366	Tropical Forest Soil	MIFSDLPSPAEASNHTTDGAKGFAQAGNRLPPLIKSGAGFFGIML*
Ga0136449_1016992491	3300010379	Peatlands Soil	IFSDLPSPAEAGFAKAGNRLPPRIKSGAGFFRIMLWGTTGHVG*
Ga0126383_101913532	3300010398	Tropical Forest Soil	MVFSDLPSPAEASSHTTDRAKGFAQAGNRYPPRVKTGAGFFGIVL*
Ga0150983_117885381	3300011120	Forest Soil	MIFSDLPSPAEASSTMRTHTKGFAQAGNRYPPRIKCGAGFFG
Ga0137380_108401412	3300012206	Vadose Zone Soil	LSVIFSDLPSPAEASSQTMSRAKGFAQAGNRFPPRIKCGAGFFGIML
Ga0137378_109449642	3300012210	Vadose Zone Soil	MIFSDLASPAEASSRMTSRAKGFAQAGNRFPPRIKCGAGFFGIML*
Ga0137378_110796922	3300012210	Vadose Zone Soil	MIFLRMIFSDLPSPAEAASETTSRATGFAQAGNRYPPRIKSGAGFFGIMR*
Ga0137378_115292781	3300012210	Vadose Zone Soil	MFSDLPSPAEASSQTTGSAFAQAGNRYPPRITCGAGL
Ga0137394_112839133	3300012922	Vadose Zone Soil	LGMIFSDLPTPAEASVHTIGLRQGFAQAGNRYPSRIKSGTGFFGIMP*
Ga0126369_106447113	3300012971	Tropical Forest Soil	MIFSDLPSPAEASIHKCGLRRGFAQAGNRFPSRIKSGTGFFGIML*
Ga0164308_118877952	3300012985	Soil	MYAWSMIFSDLPSPAEASFHMAGACKRFAQAGNRFTPRITCGAGFFGIML*
Ga0157372_119522882	3300013307	Corn Rhizosphere	MIFSDLPSPAEASSRSEKACKGFAQAGNRYPPRIKSGAGFFGI
Ga0120123_11068982	3300013770	Permafrost	MILSDLPSPAEASNAMRSARQGFAQAGNRFPPRIKSGAGFFGIM
Ga0157376_119900711	3300014969	Miscanthus Rhizosphere	MIFSDLPSPAEASFHLAAARQGFAQAGNRFPPRIKCGAGFFG
Ga0137403_114935182	3300015264	Vadose Zone Soil	MTFSDLPTPAEALIQRTRMCEGFAQAGNRCPPWIKSGACFF
Ga0187806_10625641	3300017928	Freshwater Sediment	MIFSDLASPAVASVERLGRLHGFAQAGNRYPPRIKSGAGFFGIMR
Ga0187814_100471291	3300017932	Freshwater Sediment	MIFSDLAWPTVASAERLGRLHGFAKAGNLCSLRVKSG
Ga0187779_107211791	3300017959	Tropical Peatland	MMLSDLPSPAEASIDHDDQSDGFAQAGNRHPPRIRSGAGFCRDMR
Ga0187782_103392573	3300017975	Tropical Peatland	MIFSDLSPPAEASIQHQRQCEGFAQAGNRYTPRIKSGAGIFGIMR
Ga0187782_103452142	3300017975	Tropical Peatland	MIFSDLPSPAEASSQTIVRAKGFAQAENRYPLFGIMLWLQLPAFGPEAEPLR
Ga0187782_103761583	3300017975	Tropical Peatland	MIFSDLASPAEASSLTTQPAKGFAQAGNRFPPRINSGAGFFGIMRY
Ga0187782_104082502	3300017975	Tropical Peatland	YWRMIFSDLASPAEASGQTTNHPVGFAQAGNRYPPRAKSGAGFFGIMR
Ga0187782_107232152	3300017975	Tropical Peatland	MILSDLPSPAEASTYGESRREGFAQAGNRHPSRIKSGTGFSGIML
Ga0187782_108346711	3300017975	Tropical Peatland	SCWSMIFSNLPSPAEASSRTTVGAKGFAQAGNRYPPRVKPGAGFFGIML
Ga0187782_108544591	3300017975	Tropical Peatland	VILSDLPSPAEASTYHENRHEGFAQAGNRYPPRIKRGAGI
Ga0187784_100025616	3300018062	Tropical Peatland	MIFSDLPSPAEALNQTTNRAKGFAQAGNRYPPRIKCGAGFFGIMH
Ga0187784_113147512	3300018062	Tropical Peatland	MRIIVRLLWRTYRWSMMFSDLPSPAKASSQTTGNAKGFAQVGNRYPPRIKCGAGFFGIMR
Ga0187772_101867212	3300018085	Tropical Peatland	MIFSDLPSPAEASSQTMNRPKGFAQAENRYPLFGIMLWLQLPAFGPEAEPLR
Ga0187769_109917651	3300018086	Tropical Peatland	MIFSDLPSPAEASNQTTNRAKGFAQAGNRYPPRIKCGAGFFGIMH
Ga0187771_108957972	3300018088	Tropical Peatland	MIFSDLPSPAEASRQVMNGCQGFAQAGNRCPPPITSGAGFFGIML
Ga0066662_113544472	3300018468	Grasslands Soil	LAGYSWSMIFSDLASPAEASSQTMTGATGFAQAGNRYPPRIKSGASFIGIMR
Ga0066662_118054941	3300018468	Grasslands Soil	MIFSDLPSPAEAPSYTNEPWQGFAQAGNRYPPRIKYRAGFFGIMHYTA
Ga0187797_13936052	3300019284	Peatland	MMFPDLASPAEASRNTMNRAKGFAQAGNRYPPRIESGAGFFGIML
Ga0193751_100003837	3300019888	Soil	MFCDLPSPAEAPSQMMSRNQGFAQAGTRYPPRIKSGAGFFAIML
Ga0210399_109133532	3300020581	Soil	MIRSDLPSPAEASRENISRYDGFAQAGNRFPPRIKSGAGFFRIML
Ga0210404_105919332	3300021088	Soil	MIFSDLPSPAEASRQMTEPSQGFAQAGNRFPPRIKCGAGFFGIMLESP
Ga0210400_102114892	3300021170	Soil	MIFSDLPSPAEASSQMTEQLQGFAQAGNRSPPRTKCGACFFGIML
Ga0210405_111626512	3300021171	Soil	MIFSDLPSPAEAPSHTMKPTKGFAQAGNRFPPRIKCGAGFFGIMR
Ga0213881_101615822	3300021374	Exposed Rock	MIFSDLPSPAEASIRYEGRCEGFAQAGNRCTPRIKSGAGFFGIMR
Ga0213876_100175176	3300021384	Plant Roots	DFSSNRHHALTSSWSMIFSDLASPAEASSQTTGRAKGFAQAGNRYPPRNKCGAGFFGIVL
Ga0213876_102464022	3300021384	Plant Roots	MIFSDLPSPAEASIRYEGRCEGFAQAGNRCTPRIKSGA
Ga0213876_102734241	3300021384	Plant Roots	IFSDLPSPAEASTSSEGRCDGFAQAGNRYPPRIKSGASFFGIMR
Ga0213876_103576532	3300021384	Plant Roots	MRTDFLCMIFSDLPSPAEASSQMMIRAQGFAQAGNRYPPRIKCGAGFFGIMH
Ga0213875_105048862	3300021388	Plant Roots	MMFSDLASPAEAPSHTTKGNKGFAQAGNRCPSRIKCGTGFFGIML
Ga0213875_106131871	3300021388	Plant Roots	MIFSDLASPAEASNQMTNRATGFAQAGNRYPPRIKSGAGFFGIML
Ga0210384_103268912	3300021432	Soil	MIFSDLPSPAEASSQTMSRAKGFAQAGNGFPPRIKCGAGFFGIML
Ga0187846_100446864	3300021476	Biofilm	MMFSDLPSPAEASSQTMNRSEGFAQAGNRYPPRIKCGAGFFGIML
Ga0210409_113337122	3300021559	Soil	MVSWSMIFSDLPSPAEAPSHTMKPTKGFAQAGNRFPPRIKCGARFFGIML
Ga0242660_12194132	3300022531	Soil	MTLLRTLALSFCWRMIFSDLPSPAEALSQTEGPSQGFAQAGNRSTPRIKC
Ga0212123_102764772	3300022557	Iron-Sulfur Acid Spring	MIFSDLPSPAEASSRMPNQATGFAQVENRYTPPIGSGQAFSDHAFVHSA
Ga0209171_101255672	3300025320	Iron-Sulfur Acid Spring	MILSDLPSPDEAGFAKAGNRFHPRIKSKDKLFGITLRYLRLLHCETAPPNF
Ga0207659_111872072	3300025926	Miscanthus Rhizosphere	VPLRKSRRVIDIPESYHGIYLSMILSDLPSPAEAGFAKAGNRCPPRIKSGAGFFGIMR
Ga0207665_102229072	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MIFSDLPSPAEASSQTMSRAKGFAQAGNRFPPRIKCGAGFFGIML
Ga0207691_1000186915	3300025940	Miscanthus Rhizosphere	MISSDLPPPAEALIHARGPCQGFAQAGNRSPPRIKSGAGFFGIMRRD
Ga0207683_101155101	3300026121	Miscanthus Rhizosphere	MIFSDLPPPAEALIHARGACQGFAQAGNRCPPRIKSGAGFFGIMRIYRRNAGATRNGVM
Ga0209154_10348922	3300026317	Soil	MIFLRMIFSDLPSPAEAASETTSRATGFAQAGNRYPPRIKSGAGFFGIMR
Ga0209154_12836451	3300026317	Soil	MIFSDLPSPAEAPSQTAISAMGFAQAGNRYPPRIKCGASFFGIMLYFFCSFPPSRR
Ga0209474_100344262	3300026550	Soil	MRLRMILSDLPSPAEASGRVKNAGQGFAQAGNRYPPRIKSGAGFFGITR
Ga0209577_106032572	3300026552	Soil	MIFSDLPSPAEAPSHTNEPKQGFAQAGNRYPPRIKCGAGFFGIML
Ga0208726_1038332	3300027099	Forest Soil	MIFSDLPSPAEASSQTMSRAKGFAQAGNGFPPRIKCGAGFFGITL
Ga0209524_11175592	3300027521	Forest Soil	MMFSDLPSPAEAPIEMTTGAMGFAQAGNPDPPRLNRGAGFFGIML
Ga0209419_10615161	3300027537	Forest Soil	MIFSDLPSPAEASSQMTEQLQGFAQAGNRSPPRIKCGAGFFGIMV
Ga0209329_10202943	3300027605	Forest Soil	RYCWSMIFSDLPSPAEASSQMTEQLQGFAQAGNRSPPRIKCGAGFFGIMV
Ga0209329_10254723	3300027605	Forest Soil	MMLSDLPSPAEASTGTMNDAGGFAQAGNRYAPRIKSGAGFFGIM
Ga0209328_100742092	3300027727	Forest Soil	MIFSDLPSPAEASSYTMNLAKGFAQAGNRYPPRIKCGAGFVGIML
Ga0222749_100417272	3300029636	Soil	MILSDLPSPAEASSQMMERATGFAQAGNRYPPRIECGAGFFGIMF
Ga0222749_100596803	3300029636	Soil	MIFSDLPSPAEASSQMTEQLQGFAQAGNRSPPRIKCGAGFFGIML
Ga0222749_103835402	3300029636	Soil	MIFSDLPSPAEASSQMMDRATGFAQAGNRYPPRIAPGAGFFGIML
Ga0318516_1000000928	3300031543	Soil	MIFSDLPSPAEASTGTMSCGQGFAQAENRYPPQIKSGAGFFGIMR
Ga0310915_112870241	3300031573	Soil	MIFSDLPSPAEASSHTTDRAKGFAQAGNRYPPRLKTGGK
Ga0307474_106090721	3300031718	Hardwood Forest Soil	FFDLASPAEALNETASGWRGFAQAGNRYPPRITSGAGLFGIVL
Ga0306918_100498131	3300031744	Soil	IRTYLTPAEARYEGTSGHRGFAQAGNRSLPRIKSGAGFFRIML
Ga0307475_107946002	3300031754	Hardwood Forest Soil	FSDLPSPAEASSQTDQRCQGFAQAGNRYPARIKCGAGFFGIMP
Ga0307475_115073581	3300031754	Hardwood Forest Soil	MIFPDLPSPAEASSQTDQRCQGFAQAGNRYPARIKCGAGFFGIMP
Ga0318568_106429391	3300031819	Soil	MIFSDLPSPAEASSHTTDRAKGFAQAGNRYPPRLKTGGKLFRDHA
Ga0318567_100053466	3300031821	Soil	MIFSDLPSPAEAMSCGQGFAQAENRYPPQNKSGAGFFGIMR
Ga0307479_118666992	3300031962	Hardwood Forest Soil	MIFSDLPSPAEASSQMTEQLQGFAQTGNRSPPRTKCGACFFGI
Ga0315281_117118611	3300032163	Sediment	MIFSDLPSPAEAGFAKAGNRFPPRIKSGAGFFGIMRSVRRHRLLHV
Ga0335081_125164212	3300032892	Soil	MIFSDLPSPAEASNHTKNLAEGFAQAGNRFPSRIKSGTGFFGIMLRVANPGGP
Ga0335077_109842933	3300033158	Soil	ITYSWSMIFSDLPSPAEASSQATNRATGFAQAGNRFPPRIECGAGFFGMML
Ga0335077_120442512	3300033158	Soil	MILSDLPSPAEASSQTMASTKGFAQAGNRYPPRIASGAGFFGIML
Ga0318519_105290322	3300033290	Soil	MIFSDLPSSAEASSHTTDRAKGFAQAGNRYPPRVKPGAGFFGIVL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F072553

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences