Metagenome / Metatranscriptome Family F072606

Basic Information
Family ID	F072606
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	62 residues
Representative Sequence	MTSTYLLRQADALLNLSRATFDLTVAGRLRVLAAEFRVKAQELERDGRIPREFAPAKHSPQH
Number of Associated Samples	102
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	72.73 %
% of genes near scaffold ends (potentially truncated)	28.93 %
% of genes from short scaffolds (< 2000 bps)	97.52 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (81.818 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (38.017 % of family members)
Environment Ontology (ENVO)	Unclassified (36.364 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (45.455 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 67.74% β-sheet: 0.00% Coil/Unstructured: 32.26%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF07750	GcrA	8.26
PF08238	Sel1	4.96
PF05532	CsbD	0.83
PF01274	Malate_synthase	0.83
PF05598	DUF772	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG5352	Uncharacterized conserved protein	Function unknown [S]	8.26
COG2225	Malate synthase	Energy production and conversion [C]	0.83
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.82 %
All Organisms	root	All Organisms	18.18 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.82 %
cellular organisms	root	All Organisms → cellular organisms	18.18 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.82 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	17.36 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.82 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	16.53 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.82 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	15.70 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.82 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.48 %
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	0.83 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.82 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.48 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	0.83 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.82 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.48 %
Tracheophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta	0.83 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.82 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.65 %
unclassified Azospirillum	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → unclassified Azospirillum	0.83 %
Euphyllophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta	0.83 %
Bradyrhizobium oligotrophicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium oligotrophicum	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.82 %
Bradyrhizobium sp. Tv2a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	1.65 %
Azospirillum sp. TSO35-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → unclassified Azospirillum → Azospirillum sp. TSO35-2	0.83 %
Bradyrhizobium oligotrophicum S58	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium oligotrophicum → Bradyrhizobium oligotrophicum S58	0.83 %
Spermatophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.82 %
Bradyrhizobium sp. Tv2a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	1.65 %
Magnoliopsida	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	0.83 %
Azospirillum sp. TSO35-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → unclassified Azospirillum → Azospirillum sp. TSO35-2	0.83 %
Bradyrhizobium oligotrophicum S58	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium oligotrophicum → Bradyrhizobium oligotrophicum S58	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.82 %
Bradyrhizobium sp. Tv2a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	1.65 %
Mesangiospermae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae	0.83 %
Azospirillum sp. TSO35-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → unclassified Azospirillum → Azospirillum sp. TSO35-2	0.83 %
Bradyrhizobium oligotrophicum S58	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium oligotrophicum → Bradyrhizobium oligotrophicum S58	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.82 %
Bradyrhizobium sp. Tv2a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	1.65 %
eudicotyledons	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons	0.83 %
Azospirillum sp. TSO35-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → unclassified Azospirillum → Azospirillum sp. TSO35-2	0.83 %
Bradyrhizobium oligotrophicum S58	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium oligotrophicum → Bradyrhizobium oligotrophicum S58	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.82 %
Bradyrhizobium sp. Tv2a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	1.65 %
Gunneridae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae	0.83 %
Azospirillum sp. TSO35-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → unclassified Azospirillum → Azospirillum sp. TSO35-2	0.83 %
Bradyrhizobium oligotrophicum S58	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium oligotrophicum → Bradyrhizobium oligotrophicum S58	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.82 %
Bradyrhizobium sp. Tv2a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	1.65 %
Pentapetalae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae	0.83 %
Azospirillum sp. TSO35-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → unclassified Azospirillum → Azospirillum sp. TSO35-2	0.83 %
Bradyrhizobium oligotrophicum S58	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium oligotrophicum → Bradyrhizobium oligotrophicum S58	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.82 %
Bradyrhizobium sp. Tv2a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	1.65 %
rosids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids	0.83 %
Azospirillum sp. TSO35-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → unclassified Azospirillum → Azospirillum sp. TSO35-2	0.83 %
Bradyrhizobium oligotrophicum S58	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium oligotrophicum → Bradyrhizobium oligotrophicum S58	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.82 %
Bradyrhizobium sp. Tv2a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	1.65 %
fabids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids	0.83 %
Azospirillum sp. TSO35-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → unclassified Azospirillum → Azospirillum sp. TSO35-2	0.83 %
Bradyrhizobium oligotrophicum S58	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium oligotrophicum → Bradyrhizobium oligotrophicum S58	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.82 %
Bradyrhizobium sp. Tv2a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	1.65 %
Fabales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales	0.83 %
Azospirillum sp. TSO35-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → unclassified Azospirillum → Azospirillum sp. TSO35-2	0.83 %
Bradyrhizobium oligotrophicum S58	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium oligotrophicum → Bradyrhizobium oligotrophicum S58	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.82 %
Bradyrhizobium sp. Tv2a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	1.65 %
Fabaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae	0.83 %
Azospirillum sp. TSO35-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → unclassified Azospirillum → Azospirillum sp. TSO35-2	0.83 %
Bradyrhizobium oligotrophicum S58	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium oligotrophicum → Bradyrhizobium oligotrophicum S58	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.82 %
Bradyrhizobium sp. Tv2a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	1.65 %
Papilionoideae	subfamily	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae	0.83 %
Azospirillum sp. TSO35-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → unclassified Azospirillum → Azospirillum sp. TSO35-2	0.83 %
Bradyrhizobium oligotrophicum S58	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium oligotrophicum → Bradyrhizobium oligotrophicum S58	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.82 %
Bradyrhizobium sp. Tv2a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	1.65 %
50 kb inversion clade	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade	0.83 %
Azospirillum sp. TSO35-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → unclassified Azospirillum → Azospirillum sp. TSO35-2	0.83 %
Bradyrhizobium oligotrophicum S58	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium oligotrophicum → Bradyrhizobium oligotrophicum S58	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.82 %
Bradyrhizobium sp. Tv2a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	1.65 %
genistoids sensu lato	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → genistoids sensu lato	0.83 %
Azospirillum sp. TSO35-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → unclassified Azospirillum → Azospirillum sp. TSO35-2	0.83 %
Bradyrhizobium oligotrophicum S58	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium oligotrophicum → Bradyrhizobium oligotrophicum S58	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.82 %
Bradyrhizobium sp. Tv2a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	1.65 %
core genistoids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → genistoids sensu lato → core genistoids	0.83 %
Azospirillum sp. TSO35-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → unclassified Azospirillum → Azospirillum sp. TSO35-2	0.83 %
Bradyrhizobium oligotrophicum S58	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium oligotrophicum → Bradyrhizobium oligotrophicum S58	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.82 %
Bradyrhizobium sp. Tv2a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	1.65 %
Genisteae	tribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → genistoids sensu lato → core genistoids → Genisteae	0.83 %
Azospirillum sp. TSO35-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → unclassified Azospirillum → Azospirillum sp. TSO35-2	0.83 %
Bradyrhizobium oligotrophicum S58	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium oligotrophicum → Bradyrhizobium oligotrophicum S58	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.82 %
Bradyrhizobium sp. Tv2a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	1.65 %
Lupinus	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → genistoids sensu lato → core genistoids → Genisteae → Lupinus	0.83 %
Azospirillum sp. TSO35-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → unclassified Azospirillum → Azospirillum sp. TSO35-2	0.83 %
Bradyrhizobium oligotrophicum S58	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium oligotrophicum → Bradyrhizobium oligotrophicum S58	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.82 %
Bradyrhizobium sp. Tv2a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	1.65 %
Lupinus albus	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → genistoids sensu lato → core genistoids → Genisteae → Lupinus → Lupinus albus	0.83 %
Azospirillum sp. TSO35-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → unclassified Azospirillum → Azospirillum sp. TSO35-2	0.83 %
Bradyrhizobium oligotrophicum S58	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium oligotrophicum → Bradyrhizobium oligotrophicum S58	0.83 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459016\|G1P06HT02FH1N9	Not Available	560	Open in IMG/M
2199352025\|deepsgr__Contig_183292	Not Available	522	Open in IMG/M
3300001661\|JGI12053J15887_10005887	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6484	Open in IMG/M
3300004156\|Ga0062589_102702181	Not Available	517	Open in IMG/M
3300004480\|Ga0062592_100395274	Not Available	1097	Open in IMG/M
3300004643\|Ga0062591_100531815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1019	Open in IMG/M
3300005163\|Ga0066823_10143236	Not Available	524	Open in IMG/M
3300005329\|Ga0070683_101896747	Not Available	573	Open in IMG/M
3300005337\|Ga0070682_100205393	Not Available	1392	Open in IMG/M
3300005338\|Ga0068868_102379883	Not Available	506	Open in IMG/M
3300005354\|Ga0070675_101936155	Not Available	544	Open in IMG/M
3300005367\|Ga0070667_102182248	Not Available	522	Open in IMG/M
3300005436\|Ga0070713_100495184	Not Available	1153	Open in IMG/M
3300005441\|Ga0070700_100397263	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1035	Open in IMG/M
3300005455\|Ga0070663_102172490	Not Available	501	Open in IMG/M
3300005535\|Ga0070684_101583768	Not Available	618	Open in IMG/M
3300005617\|Ga0068859_102275485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	598	Open in IMG/M
3300005718\|Ga0068866_10284610	Not Available	1026	Open in IMG/M
3300005834\|Ga0068851_10734195	Not Available	610	Open in IMG/M
3300005840\|Ga0068870_10172817	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1291	Open in IMG/M
3300005841\|Ga0068863_102738894	Not Available	501	Open in IMG/M
3300005844\|Ga0068862_102051467	Not Available	583	Open in IMG/M
3300006038\|Ga0075365_10830855	Not Available	652	Open in IMG/M
3300006038\|Ga0075365_10847799	Not Available	645	Open in IMG/M
3300006048\|Ga0075363_100804126	Not Available	572	Open in IMG/M
3300006175\|Ga0070712_100366489	Not Available	1183	Open in IMG/M
3300006175\|Ga0070712_101530696	Not Available	583	Open in IMG/M
3300006177\|Ga0075362_10647247	Not Available	549	Open in IMG/M
3300006178\|Ga0075367_10945907	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	550	Open in IMG/M
3300006881\|Ga0068865_101270974	Not Available	653	Open in IMG/M
3300009098\|Ga0105245_12744696	Not Available	545	Open in IMG/M
3300009156\|Ga0111538_12654211	Not Available	628	Open in IMG/M
3300010154\|Ga0127503_10601977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	880	Open in IMG/M
3300010373\|Ga0134128_12009534	Not Available	636	Open in IMG/M
3300010375\|Ga0105239_10876260	Not Available	1030	Open in IMG/M
3300010397\|Ga0134124_11747423	Not Available	655	Open in IMG/M
3300010400\|Ga0134122_10881609	Not Available	863	Open in IMG/M
3300011119\|Ga0105246_10733519	Not Available	869	Open in IMG/M
3300012212\|Ga0150985_104883755	Not Available	727	Open in IMG/M
3300012212\|Ga0150985_112345269	Not Available	587	Open in IMG/M
3300012469\|Ga0150984_121539043	Not Available	513	Open in IMG/M
3300012955\|Ga0164298_10611099	Not Available	750	Open in IMG/M
3300012958\|Ga0164299_11110939	Not Available	591	Open in IMG/M
3300012960\|Ga0164301_10887006	Not Available	691	Open in IMG/M
3300012960\|Ga0164301_11823741	Not Available	512	Open in IMG/M
3300012984\|Ga0164309_10467713	Not Available	957	Open in IMG/M
3300012988\|Ga0164306_10153630	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1572	Open in IMG/M
3300013296\|Ga0157374_11813391	Not Available	635	Open in IMG/M
3300014325\|Ga0163163_12949018	Not Available	531	Open in IMG/M
3300014326\|Ga0157380_11085057	Not Available	839	Open in IMG/M
3300015374\|Ga0132255_103479675	Not Available	670	Open in IMG/M
3300017792\|Ga0163161_10817835	Not Available	784	Open in IMG/M
3300017965\|Ga0190266_10296561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium oligotrophicum → Bradyrhizobium oligotrophicum S58	840	Open in IMG/M
3300017965\|Ga0190266_10352560	Not Available	794	Open in IMG/M
3300017965\|Ga0190266_10354670	Not Available	792	Open in IMG/M
3300018031\|Ga0184634_10482299	Not Available	556	Open in IMG/M
3300018073\|Ga0184624_10469642	Not Available	550	Open in IMG/M
3300018074\|Ga0184640_10051481	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1704	Open in IMG/M
3300018077\|Ga0184633_10242317	Not Available	927	Open in IMG/M
3300018465\|Ga0190269_11181372	Not Available	599	Open in IMG/M
3300018469\|Ga0190270_10561474	Not Available	1103	Open in IMG/M
3300018469\|Ga0190270_13392973	Not Available	505	Open in IMG/M
3300019263\|Ga0184647_1158227	Not Available	553	Open in IMG/M
3300019279\|Ga0184642_1134031	Not Available	663	Open in IMG/M
3300019279\|Ga0184642_1134590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	551	Open in IMG/M
3300019869\|Ga0193705_1045223	Not Available	921	Open in IMG/M
3300019886\|Ga0193727_1172939	Not Available	563	Open in IMG/M
3300019887\|Ga0193729_1063050	Not Available	1479	Open in IMG/M
3300019889\|Ga0193743_1237046	Not Available	544	Open in IMG/M
3300019890\|Ga0193728_1361709	Not Available	516	Open in IMG/M
3300020001\|Ga0193731_1159802	Not Available	547	Open in IMG/M
3300020082\|Ga0206353_11697008	Not Available	534	Open in IMG/M
3300021078\|Ga0210381_10045670	Not Available	1294	Open in IMG/M
3300021363\|Ga0193699_10123601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1056	Open in IMG/M
3300022694\|Ga0222623_10217673	Not Available	740	Open in IMG/M
3300023069\|Ga0247751_1090679	Not Available	544	Open in IMG/M
3300025899\|Ga0207642_10605549	Not Available	682	Open in IMG/M
3300025907\|Ga0207645_10197842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1322	Open in IMG/M
3300025926\|Ga0207659_10909098	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → genistoids sensu lato → core genistoids → Genisteae → Lupinus → Lupinus albus	757	Open in IMG/M
3300025927\|Ga0207687_10467850	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1048	Open in IMG/M
3300025933\|Ga0207706_11740972	Not Available	501	Open in IMG/M
3300025981\|Ga0207640_11326522	Not Available	643	Open in IMG/M
3300025986\|Ga0207658_12159882	Not Available	506	Open in IMG/M
3300025986\|Ga0207658_12189225	Not Available	502	Open in IMG/M
3300026023\|Ga0207677_10605940	Not Available	961	Open in IMG/M
3300026023\|Ga0207677_12116317	Not Available	523	Open in IMG/M
3300026067\|Ga0207678_10452306	All Organisms → cellular organisms → Bacteria → Proteobacteria	1116	Open in IMG/M
3300026121\|Ga0207683_11321516	Not Available	667	Open in IMG/M
3300027388\|Ga0208995_1005659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2074	Open in IMG/M
3300027480\|Ga0208993_1008916	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1713	Open in IMG/M
3300028379\|Ga0268266_12143193	Not Available	531	Open in IMG/M
3300028710\|Ga0307322_10044432	Not Available	1074	Open in IMG/M
3300028713\|Ga0307303_10136170	Not Available	583	Open in IMG/M
3300028718\|Ga0307307_10246100	Not Available	571	Open in IMG/M
3300028722\|Ga0307319_10237878	Not Available	599	Open in IMG/M
3300028744\|Ga0307318_10164472	Not Available	763	Open in IMG/M
3300028755\|Ga0307316_10014950	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → unclassified Azospirillum → Azospirillum sp. TSO35-2	2439	Open in IMG/M
3300028768\|Ga0307280_10047590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1332	Open in IMG/M
3300028768\|Ga0307280_10084384	Not Available	1038	Open in IMG/M
3300028787\|Ga0307323_10260980	Not Available	624	Open in IMG/M
3300028787\|Ga0307323_10266075	Not Available	617	Open in IMG/M
3300028793\|Ga0307299_10154912	Not Available	863	Open in IMG/M
3300028807\|Ga0307305_10156727	Not Available	1051	Open in IMG/M
3300028876\|Ga0307286_10421152	Not Available	502	Open in IMG/M
3300030829\|Ga0308203_1036578	Not Available	704	Open in IMG/M
3300030829\|Ga0308203_1053527	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	617	Open in IMG/M
3300030829\|Ga0308203_1067216	Not Available	570	Open in IMG/M
3300030829\|Ga0308203_1086859	Not Available	521	Open in IMG/M
3300030830\|Ga0308205_1044048	Not Available	580	Open in IMG/M
3300030902\|Ga0308202_1045017	Not Available	793	Open in IMG/M
3300030902\|Ga0308202_1059416	Not Available	719	Open in IMG/M
3300030902\|Ga0308202_1112369	Not Available	574	Open in IMG/M
3300030902\|Ga0308202_1124226	Not Available	554	Open in IMG/M
3300030902\|Ga0308202_1137092	Not Available	535	Open in IMG/M
3300031058\|Ga0308189_10286841	Not Available	638	Open in IMG/M
3300031091\|Ga0308201_10306322	Not Available	567	Open in IMG/M
3300031092\|Ga0308204_10113750	Not Available	762	Open in IMG/M
3300031114\|Ga0308187_10074750	All Organisms → cellular organisms → Bacteria	997	Open in IMG/M
3300031231\|Ga0170824_107405360	Not Available	500	Open in IMG/M
3300031740\|Ga0307468_102279288	Not Available	526	Open in IMG/M
3300032013\|Ga0310906_10801677	Not Available	665	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	65.29%
Host-Associated	Host-Associated	33.88%
Engineered	Engineered	0.83%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	57.02%
Plants	Host-Associated → Plants	33.88%
Aquatic	Environmental → Aquatic	8.26%
Solid Waste	Engineered → Solid Waste	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	57.02%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.88%
Rhizoplane	Host-Associated → Plants → Rhizoplane	14.05%
Roots	Host-Associated → Plants → Roots	4.96%
Freshwater	Environmental → Aquatic → Freshwater	4.13%
Sediment	Environmental → Aquatic → Sediment	4.13%
Grass	Engineered → Solid Waste → Grass	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	48.76%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.74%
Soil	Host-Associated → Plants → Rhizosphere → Soil	9.09%
Loam	Environmental → Terrestrial → Soil → Loam	8.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.79%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.13%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	4.13%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.31%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.48%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.83%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.83%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.83%
Composting	Engineered → Solid Waste → Grass → Composting	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	42.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	9.09%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.79%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.13%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	4.13%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.31%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.31%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.48%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.48%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.65%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.83%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.83%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.83%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	38.02%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	5.79%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	4.13%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	3.31%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.31%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.31%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.31%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.48%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.48%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.48%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.48%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.48%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.48%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.65%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.65%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.65%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.83%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.83%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.83%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.83%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.83%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459016	Litter degradation ZMR2	Engineered	Open in IMG/M
2199352025	Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005163	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006048	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3	Host-Associated	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006177	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2	Host-Associated	Open in IMG/M
3300006178	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018077	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019263	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019279	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019869	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300019889	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2c2	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300020001	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a2	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300023069	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S049-202B-5	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027388	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_O2 (SPAdes)	Environmental	Open in IMG/M
3300027480	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M3 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028713	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_184	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300030829	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_357 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030830	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_368 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030902	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_356 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F072606

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2ZMR_01719070	2170459016	Switchgrass, Maize And Mischanthus Litter	MTSNYLLRQAEALLSLSRATFDLAVAGRLRALAAEFRAKAQELEDGGHIPGEFAPSRHSPQH
deepsgr_03140380	2199352025	Soil	MTSTYLLRQADALLNLSRATFDLTVAGRLRVLAAEFRVKAQELERDGRIPREFAPANRSPQH
JGI12053J15887_100058871	3300001661	Forest Soil	MTSTYLFRQAEALLILSRATFDLSVAGRLRALAADFRAKAQELEQAARLPSELAQAKHSPQH*
Ga0062589_1027021811	3300004156	Soil	MTSNYLLRQAEALLSLSRATFDLAVAGRLRALAAEFRAKAQELEDGGHIPGEFAPSRQSPQH*
Ga0062592_1003952742	3300004480	Soil	MTSNYLLRQAEALLSLSRATFDLAVAGRLRALAAEFRAKAQELEDGGHIPGEFAPSRHSPQH*
Ga0062591_1005318152	3300004643	Soil	RQAEALLSLSRATFDLAVAGRLRALAAEFRAKAQELEDGGHIPGEFAPSRHSPQH*
Ga0066823_101432361	3300005163	Soil	MTSTYLLRQADALLNLSRATFDLTVAGRLRVLAAEFRVKAQELERDGRIPREFAPANRSPQH*
Ga0070683_1018967471	3300005329	Corn Rhizosphere	MTSTYLLRQADALLNLSRATFDLTVAGRLRVLAAEFRVKAQELERDGRISREFAPAKHSPQH*
Ga0070682_1002053932	3300005337	Corn Rhizosphere	MTSTYLLRQADALINLSRATFDLTVAGRLRVLAAEFRVKAQELERDGRIPREFAPAKRSPQH*
Ga0068868_1023798831	3300005338	Miscanthus Rhizosphere	MTSTYLLRQADALINLSRATFDLTVAGRLRVLAAEFRVKAQELERDGRIPREFAPVKHSPQH*
Ga0070675_1019361551	3300005354	Miscanthus Rhizosphere	MTSNYLLRQAEALLNLSRATFDLALAGRLRALAAEFRAKAQELEQNSCIPGEFARAKHSPQH*
Ga0070667_1021822481	3300005367	Switchgrass Rhizosphere	MTSTYLLRQADALINLSRATFDLTVAGRLRVLAAEFRVKAQELERDGRIPREFVPAKHSPQH*
Ga0070713_1004951841	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MTSNYLLRQAEALLSLSRATFDLAVAGRLRALAAEFRAKAQELEQGHIPGELAPAKHSSQH*
Ga0070700_1003972631	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MTSTYLLRQADALLNLSRATFDLTVAGRLRVLAAEFRVKAQELERDGRIPREFAPAKHSPQH*
Ga0070663_1021724901	3300005455	Corn Rhizosphere	MTSNYLLRQAEALLNLSRATFDLALAGRLRAMAAEFRAKAEELEQNSCIPRELAQAKHSPQH*
Ga0070684_1015837681	3300005535	Corn Rhizosphere	MTSTYLLRQADALINLSRATFDLTVAGRLRVLAAEFRVKAQELERDGRIPREFAPANRSPQH*
Ga0068859_1022754851	3300005617	Switchgrass Rhizosphere	MTSNYLLRQAEALLHLSRATFDLAVAGRLRALAAEFRAKAQELEQNSCIPGEFAPAKHSPQH*
Ga0068866_102846101	3300005718	Miscanthus Rhizosphere	MTSTYLLRQADALINLSRATFDLTVAGRLRVLAAEFRVKAQELERDGRIPREFAPAKHSPQH*
Ga0068851_107341951	3300005834	Corn Rhizosphere	MTSTYLLRQADALVNLSRATFDLTVAGRLRVLAAEFRVKAQELERDGRISREFVPAKHSPQH*
Ga0068870_101728171	3300005840	Miscanthus Rhizosphere	MTSNYLLRQAEALLNLSRATFDLALAGRLRALAAEFRAKAQELEQNSCIPGEFAPAKH
Ga0068863_1027388941	3300005841	Switchgrass Rhizosphere	MTSTYLLRQADALINLSRATFDLTVAGRLRVLAAEFRVKAQELERDGRIPREFAPANRTPQH*
Ga0068862_1020514671	3300005844	Switchgrass Rhizosphere	MTSNYLLRQAEALLHLSRATFDLALAGRLRALAAEFRAKAQELEQGHIPGELAPAKHSSQH*
Ga0075365_108308552	3300006038	Populus Endosphere	MTSNYLLRQAEALLSLSRATFDLAVAGRLRTLAAEFRAKAQELEDGGHIPGEFAPSRHSPQH*
Ga0075365_108477991	3300006038	Populus Endosphere	GEKAAMTSNYLLRQAEALLHLSRATFDLAVAGRLRALAAEFRAKAQELEQGHIPGELAPAKHSPQH*
Ga0075363_1008041262	3300006048	Populus Endosphere	MTSNYLLRQAEALLNLSRATFDLAVAGRLRTLAAEFRAKAQELEQNGCIPGELAQAKPSPQH*
Ga0070712_1003664891	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MTSNYLLRQAEALLSLSRATFDLAVAGRLRALAAEFRAKAQELEDGGNIPGEFAPSRHSPQH*
Ga0070712_1015306961	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MTSTYLLRQADALINLSRATFDLTVAGRLRVLAAEFRVKAQELERDGRIPREFAPANRSPQY*
Ga0075362_106472471	3300006177	Populus Endosphere	MTSNYLLRQAEALLHLSRATFDLAVAGRLRALAAEFRAKAQELEDGGHIPGEFAPSRHSPQH*
Ga0075367_109459071	3300006178	Populus Endosphere	MTSNYLLRQAEALLHLSRATFDLAVAGRLRALAAEFRAKAQELEQSHIPGELAPAKHSPQH*
Ga0068865_1012709741	3300006881	Miscanthus Rhizosphere	MTSNYLLRQAEALLNLSRATFDLALAGRLRALAAEFRAKAQELEQNGCIPGELARAKHSPQH*
Ga0105245_127446961	3300009098	Miscanthus Rhizosphere	MTPNYLLRQAEALLNLSRATFDLAVAGRLRTLAAEFRAKAQELEQNGHIPGEFAPAKHSPQH*
Ga0111538_126542111	3300009156	Populus Rhizosphere	MTSNYLLRQAEALLNLSRATFDLALAGRLRALAAEFRAKAQELEQGHIPGELAPAKHSSQH*
Ga0127503_106019771	3300010154	Soil	KKALAKEGRRTDMTSTYLLRQADALLNLSRATFDLTVAGRLRVLAAEFRAEAQELERDGRIPREFAPTNRSPQH*
Ga0134128_120095341	3300010373	Terrestrial Soil	MTSNYLLRQAEALLNLSRATFDLALAGRLRALAAEFRAKAQELEQNSCIPGEFAPAKHSPQH*
Ga0105239_108762601	3300010375	Corn Rhizosphere	MTSNYLLRQAEALLSLSRATFDLAVAGRLRALAAEFRAKAQELEQGHIPGELAPAKHSPQH*
Ga0134124_117474231	3300010397	Terrestrial Soil	MTSTYLLRQADALINLSRATFDLTVAGRLGVLAAEFRVKAQELERDGRIPREFVPAKHSPQH*
Ga0134122_108816091	3300010400	Terrestrial Soil	MTSTYLLRQADALINLSRATFDLTVAGRLRVLAAEFRVKAQELERDGRIPREFAPANHSPQH*
Ga0105246_107335191	3300011119	Miscanthus Rhizosphere	MTSTYLLRQADALINLSRATFDLTVAGRLRVLAAEFRVKAQELERDGRIPREFAPAKPSPQH*
Ga0150985_1048837551	3300012212	Avena Fatua Rhizosphere	TSTYLLRQADALLNLSRATFDLTVAGRLRVLAAEFRVKAQELERDGRIPREFAPANRSPQH*
Ga0150985_1123452691	3300012212	Avena Fatua Rhizosphere	MTSNYLLRQAEALLNLSRATFDLAVAGRLRALAAEFRAKAQELEQGHIPGELAPAKHSSQH*
Ga0150984_1215390431	3300012469	Avena Fatua Rhizosphere	KPAMTSNYLLRQAEALLNLSRATFDLAVAGRLRALAAEFRAKAQELEQGHIPGELAPAKHSSQH*
Ga0164298_106110991	3300012955	Soil	MTSTYLLRQADALINLSRATFDLTVAGRLRVLAAEFRVKAQELERDGRIPREFAPAKPSPQY*
Ga0164299_111109391	3300012958	Soil	MTPTYLLRQADALINLSRATFDLTVAGRLRVLAAEFRVKAQELERDGRIPREFAPAKHSPQH*
Ga0164301_108870061	3300012960	Soil	MTSNYLLRQAEALLNLSRATFDLALAGRLRAMAAEFRAKAEELEQNSCIPPELAQAKHSPQH*
Ga0164301_118237411	3300012960	Soil	MTSNYLLRPAEALLSLSRATFDLAVAGRLRALAAEFRAKAQELEDGGHIPGEFAPSRHSPQH*
Ga0164309_104677131	3300012984	Soil	MTSTYLLRQADALTNLSRATFDLTVAGRLRVLAAEFRVKAQELERDGRIPREFAPANRSPQY*
Ga0164306_101536301	3300012988	Soil	MTSNYLLRQAEALLSLSRATFDLAVAGRLRALAAEFRAKAQELEDGGQIPGEFAPSRHSPQH*
Ga0157374_118133911	3300013296	Miscanthus Rhizosphere	MTSTYLLRQADALLNLSRATFDLTVAGRLRVLAAEFRVKAQELERDGRIPREFAPANRTPQH*
Ga0163163_129490181	3300014325	Switchgrass Rhizosphere	MTSNYLLRQAEALLNLSRATFDLAVAGRLRTLAAEFRAKAQELEQNGCIPGELGPAKHSPQH*
Ga0157380_110850571	3300014326	Switchgrass Rhizosphere	MTSTYLLRQADALTNLSRATFDLTVAGRLRVLAAEFRVKAQELERDGRIPREFAPAKPSPQH*
Ga0132255_1034796751	3300015374	Arabidopsis Rhizosphere	MTSNYLLRQAEALLSLSRATFDLALAGRLRALAAEFRAKAQELEPNGCIPREPAQAKHSPQH*
Ga0163161_108178351	3300017792	Switchgrass Rhizosphere	MTSNYLLRQAEALLHLSRATFDLALAGRLRALAAEFRAKAQELEQGHIPGELAPAKHSSQ
Ga0190266_102965612	3300017965	Soil	MTSTYLLRQADALINLSRATFDLTVAGRLRVLAAEFRVKAQELERDGRIPREFAPAKHSPQH
Ga0190266_103525601	3300017965	Soil	MTSNYLLRQAEALLNLSRATFDLALAGRLRALAAEFRAKAQELEQGHIPGELASAKHSPQ
Ga0190266_103546701	3300017965	Soil	QADALINLSRATFDLTVAGRLRVLAAEFRVKAQELERDGRIPREFAPANHSPQH
Ga0184634_104822991	3300018031	Groundwater Sediment	MTSNYLLRQADALLNLSRATFDLTVAGRLRVLAAEFRVKAQELERDGRTPREFAPANRSPQH
Ga0184624_104696422	3300018073	Groundwater Sediment	MTSTYLLRQADALLNLSRATFDLTVAGRLRVLAAEFRVKAQELERDARVPREFAPANRAPQH
Ga0184640_100514813	3300018074	Groundwater Sediment	MTSTYLLRQADALINLSRATFDLTVAGRLRALAAEFRAKAQELERDGRIPREFAPANHPPQH
Ga0184633_102423171	3300018077	Groundwater Sediment	MTSTYLLRQADALINLSRATFDLTVAGRLRVLAAEFRVKAQELERDGRIPREFAPANHSPQH
Ga0190269_111813721	3300018465	Soil	MTSTYLLGQAEALLNLSRSTFDLTVAGRLRVLAAEFRVKAQELERDGRIPREFAPANRSPQH
Ga0190270_105614742	3300018469	Soil	MTPNYLLRQADALLNLSRATFDLTVAGRLRVLAAEFRVKAQELERDGRIPREFAPAKHSPQH
Ga0190270_133929731	3300018469	Soil	MTSNYLLRQAEALLYLSRATFDLALAGRLRALAAEFRAKAQELEQSHIPGELAPAKHSPQ
Ga0184647_11582271	3300019263	Groundwater Sediment	MTLTYLLRQADALINLSRATFDFMVAGWLCVLVAEFRVKAQELERDGRIPREFGPANRAPQH
Ga0184642_11340311	3300019279	Groundwater Sediment	KKALANEGRRTDMTSTYLLGQAETLLNLSRSTFDLTVAGRLRVLAAEFRVKAQELERDGRIPREFAPANRSPQH
Ga0184642_11345901	3300019279	Groundwater Sediment	TDMTSTYLLGQAEALLNLSRSTFDLTVAGRLRVLAAEFRVKAQELERDGRIPREFAPANRSPQH
Ga0193705_10452233	3300019869	Soil	MTSTYLLGQAEALLNLSRSTFDLTVAGRLRVLAAEFRVKAQELERDGRIPREFAPANRSP
Ga0193727_11729391	3300019886	Soil	MTSTYLLGQAEALLNLSRSTFDLTVAGRLRVLAAEFRAEAQELERDGRIPREFAPANRSPQH
Ga0193729_10630502	3300019887	Soil	MTSTYLLRQEEALLILSRATFDLTVAGRLRALAAEFRAKAQELERDGRIPREFAPANRSPQH
Ga0193743_12370461	3300019889	Soil	MTPNYLFRQAEALLHLSRATFDLGVAGRLRALAAEFRAKAQELEQSHIPGELAPAKHSPQ
Ga0193728_13617091	3300019890	Soil	MTSTYLLGQAEALLNLSRSTFDLTVAGRLRALAAEFRAKAQELERDGRIPREFAPANRSPQH
Ga0193731_11598021	3300020001	Soil	MTSTYLLGQAEALLNLSRSTFDLTVAGRLRVLAAEFRVKAQELERDGRIPREFAPANHSPQH
Ga0206353_116970081	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	MTSTYLLRQADALLNLSRATFDLTVAGRLRVLAAEFRVKAQELERDGRIPREFAPAKHCPQH
Ga0210381_100456701	3300021078	Groundwater Sediment	MTSTYLLRQEEALLNLSRATFDLTVAGRLRALAAEFRAKAQELERDGRIGREFAPANHPPQH
Ga0193699_101236012	3300021363	Soil	MTSTYLFRQAEALLILSRATIDLAVAGRLRALAADFRAKAQELEQAARLPSELAQAKHSPQH
Ga0222623_102176731	3300022694	Groundwater Sediment	EGETTDMTSTYLLGQAEALLNLSRSTFDLTVAGRLRVLAAEFRVKAQELERDARVPREFAPANRAPQH
Ga0247751_10906791	3300023069	Soil	NYLLRQAEALLSLSRATFDLAVAGRLRALAAEFRAKAQELEDGGHIPGEFAPSRHSPQH
Ga0207642_106055491	3300025899	Miscanthus Rhizosphere	MTSTYLLRQADALINLSRATFDLTVAGRLRVLAAEFRVKAQELERDGRIPRNFAPAKPSPQH
Ga0207645_101978421	3300025907	Miscanthus Rhizosphere	TSNYLLRQAEALLNLSRATFDLALAGRLRALAAEFRAKAQELEQNSCIPGEFARAKHSPQ
Ga0207659_109090981	3300025926	Miscanthus Rhizosphere	MTSNYLLRQAEALLNLSRATFDLALAGRLRALAAEFRAKAQELEQNGCIPGELAQAKHSPQH
Ga0207687_104678502	3300025927	Miscanthus Rhizosphere	ADALINLSRATFDLTVAGRLRVLAAEFRVKAQELERDGRIPREFAPAKHSPQH
Ga0207706_117409721	3300025933	Corn Rhizosphere	MTSNYLLRQAEALLSLSRATFDLAVAGRLRALAAEFRAKAQELEQGHIPGELAPAKHSPQ
Ga0207640_113265221	3300025981	Corn Rhizosphere	MTSTYLLRQADALINLSRATFDLTVAGRLRVLAAEFRVKAQELERDGRIPREFAPANRSPQY
Ga0207658_121598821	3300025986	Switchgrass Rhizosphere	MTSNYLLRQAEALLSLSRATFDLAVAGRLRALAAEFRAKAQELEDGGHIPGEFAPSRQSPQH
Ga0207658_121892251	3300025986	Switchgrass Rhizosphere	MTSTYLLRQADALLNLSRATFDLTVAGRLRVLAAEFRVKAQELERDGRIPREFAPAKHSPQH
Ga0207677_106059401	3300026023	Miscanthus Rhizosphere	MTSTYLLRQADALINLSRATFDLTVAGRLRVLAAEFRVKAQELERDGRIPREFAPAKHCPQH
Ga0207677_121163171	3300026023	Miscanthus Rhizosphere	MTSNYLLRQAEALLNLSRATFDLAVAGRLRALAAEFRAKAQELEQNGHIPGEFAPAKHSPQH
Ga0207678_104523062	3300026067	Corn Rhizosphere	MTSNYLLRQAEALLNLSRATFDLAVAGRLRALAAEFRAKAQELEQGHIPGELAPAKHSSQ
Ga0207683_113215161	3300026121	Miscanthus Rhizosphere	KLAMTSNYLLRQAEALLNLSRATFDLALAGRLRALAAEFRAKAQELEQNSCIPGEFAPAKHSPQH
Ga0208995_10056592	3300027388	Forest Soil	MTSTYLFRQAEALLILSRATFDLAVAGRLRALAAEFRAKAQELEQAARLPSELAQAKPSPQH
Ga0208993_10089161	3300027480	Forest Soil	MTSTYLFRQAEALLILSRATFDLSVAGRLRALAADFRAKAQELEQAARLPSELAQAKHSPQH
Ga0268266_121431931	3300028379	Switchgrass Rhizosphere	MTSNYLLRQAEALLNLSRATFDLALAGRLRALAAEFRAKAQELEQGHIPGELAPAKHSSQ
Ga0307322_100444321	3300028710	Soil	PQDMTSTYLLRQADALINLSRATFDLTVAGRLRVLAAEFRVKAQELERDGRIPREFAPANRSPQH
Ga0307303_101361701	3300028713	Soil	MTSTYLLRQEEALLNLSRATFDLTVAGRLRVLAAEFRVKAQELERDGRIPREFAPANRSPQH
Ga0307307_102461001	3300028718	Soil	MTSTYLLRQEEALLNLSRATFDLTVAGRLRALAAEFRAKAQELERDGRIPREFAPANRSPQH
Ga0307319_102378781	3300028722	Soil	MTSTYLLRQEEALLNLSRATFDLTVAGRLRALAAEFRAKAQELERDGRIPREFAPATRS
Ga0307318_101644721	3300028744	Soil	MTPNYLLRQADALLNLSRATFDLTVAGRLRALAAEFRAKAQELERDGRIPREFAPATRSPQH
Ga0307316_100149503	3300028755	Soil	TSTYLLRQADALINLSRATFDLTVAGRLRVLAAEFRVKAQELERDGRIPREFAPANHSPQ
Ga0307280_100475901	3300028768	Soil	MTSTYLLRQAEALLILSRATFDLTVAGRLRALAAEFRAKAQELERDGRIPREFAPANRSPQH
Ga0307280_100843842	3300028768	Soil	MTSTYLLGQAETLLNLSRSTFDLTVAGRLRVLAAEFRVKAQELERDGRIPREFAPANHSPQH
Ga0307323_102609801	3300028787	Soil	RTDMTSTYLLRQEEALLNLSRATFDLTVAGRLRALAAEFRAKAQELERDGRIPREFAPANRSPQH
Ga0307323_102660751	3300028787	Soil	DALINLSRATFDLTVAGRLRVLAAEFRVKAQELERDGRIPREFAPANHSPQH
Ga0307299_101549121	3300028793	Soil	MTSTYLLGQAETLLNLSRSTFDLTVAGRLRVLAAEFRVKAQELERDGRIPREFAPANRSPQH
Ga0307305_101567271	3300028807	Soil	MTSTYLLGQAEALLNLSRSTFDLTVAGRLRALAAEFRAKAQELERDGRIPREFAPATRSPQH
Ga0307286_104211521	3300028876	Soil	RQEEALLILSRATFDLTVAGRLRALAAEFRAKAQELERDGRIPREFAPATRSPQH
Ga0308203_10365781	3300030829	Soil	MTATYLLRQEEALLNLSRATFDLTVDGRLRVLAAEFRVKAQELERDGRIPREFAPANRSPQH
Ga0308203_10535271	3300030829	Soil	GETTDMTSTYLLGQAEALLNLSRSTFDLTVAGRLRVLAAEFRVKAQELERDGRIPREFAPANRSPQH
Ga0308203_10672161	3300030829	Soil	MTSTYLLGQAEALLNLSRSTFDLTVAGRLRVLAAEFRLKAQELERDGRIPREFAPANRSPQH
Ga0308203_10868592	3300030829	Soil	MTATYLLRQEEALLNLSRATFDLTVAGRLRALAAEFRAKAQELEQGHIPGELAPASHSPQ
Ga0308205_10440481	3300030830	Soil	KALAQEGRRTDMTSTYLLRQAEALLNLSRSTFDLTVAGRLRVLAAEFRVKAQELERDGRIPREFAPANRSPQH
Ga0308202_10450171	3300030902	Soil	KKALANEGRRTDMTSTYLLRQADALLTLSRATFDLTVAGRLRVLAAEFRVKAQELERDSRIPREFAPANRSPQH
Ga0308202_10594161	3300030902	Soil	LGQAEALLNLSRSTFDLTVAGRLRVLAAEFRVKAQELERDARVPREFAPANRAPQH
Ga0308202_11123691	3300030902	Soil	EALLNLSRSTFDLTVAGRLRVLAAEFRLKAQELERDGRIPREFAPANRSPQH
Ga0308202_11242261	3300030902	Soil	KSPRQRGETTDMTSTYLLRQADALINLSRATFDLTVAGRLRVLAAEFRVKAQELERDGRIPREFAPANHSPQH
Ga0308202_11370921	3300030902	Soil	LGQAEALLNLSRSTFDLTVAGRLRVLAAEFRVKAQELERDGRIPREFAPANRSPQH
Ga0308189_102868411	3300031058	Soil	RGETTDMTSTYLLGQAEALLNLSRSTFDLTVAGRLRVLAAEFRVKAQELERDGRIPREFAPANRSPQH
Ga0308201_103063221	3300031091	Soil	QKSPRQRGETTDMTSTYLLRQADALINLSRATFDLTVAGRLRVLAAEFRVKAQELERDGRIPREFAPANHSPQH
Ga0308204_101137502	3300031092	Soil	TDMTSTYLLRQEEALLNLSRATFDLTVAGRLRALAAEFRAKAQELERDGRIPREFAPANRSPQH
Ga0308187_100747501	3300031114	Soil	KALAHEGRRTDMTSTYLLGQAEALLNLSRSTFDLTVAGRLRVLAAEFRVKAQELERDGRIPREFAPANRSPQH
Ga0170824_1074053601	3300031231	Forest Soil	MTSTYLLRQADALLNLSRATFDLTVAGRLRVLAAEFRVKAQEREREGRIPREFAPANRSPQH
Ga0307468_1022792881	3300031740	Hardwood Forest Soil	MTSTYLLRQAEALLNLSRGTFDLTVAGRLRVLAAEFRVKAQELERDGRIPREFAPADHSPRH
Ga0310906_108016771	3300032013	Soil	MTSNYLLRQADALINLSRATFDLTVAGRLRVLAAEFRVKAQELERDGRIPREFAPANRSPQH

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign