Metagenome Family F072609

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F072609
Family Type	Metagenome
Number of Sequences	121
Average Sequence Length	57 residues
Representative Sequence	MTAAWTHPVEFVRVVASLMPRELEATITPVTERMSDAQLEAIIARGLQSGLDPAATDEDAQIIQ
Number of Associated Samples	95
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	23.97 %
% of genes near scaffold ends (potentially truncated)	48.76 %
% of genes from short scaffolds (< 2000 bps)	80.17 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.28

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (51.240 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil (23.967 % of family members)
Environment Ontology (ENVO)	Unclassified (33.058 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (46.281 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 26.09% β-sheet: 0.00% Coil/Unstructured: 73.91%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.28
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.28
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF04392	ABC_sub_bind	19.01
PF00155	Aminotran_1_2	5.79
PF06751	EutB	4.13
PF05985	EutC	4.13
PF10686	YAcAr	2.48
PF03401	TctC	0.83
PF01144	CoA_trans	0.83
PF13458	Peripla_BP_6	0.83
PF00107	ADH_zinc_N	0.83
PF03264	Cytochrom_NNT	0.83
PF01596	Methyltransf_3	0.83
PF04134	DCC1-like	0.83
PF04226	Transgly_assoc	0.83
PF00135	COesterase	0.83
PF07715	Plug	0.83
PF06035	Peptidase_C93	0.83
PF08706	D5_N	0.83
PF03412	Peptidase_C39	0.83
PF04909	Amidohydro_2	0.83
PF17158	MASE4	0.83
PF13751	DDE_Tnp_1_6	0.83
PF05872	HerA_C	0.83
PF01699	Na_Ca_ex	0.83
PF13407	Peripla_BP_4	0.83
PF13185	GAF_2	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	19.01
COG4302	Ethanolamine ammonia-lyase, small subunit	Amino acid transport and metabolism [E]	4.13
COG4303	Ethanolamine ammonia-lyase, large subunit	Amino acid transport and metabolism [E]	4.13
COG0387	Cation (Ca2+/Na+/K+)/H+ antiporter ChaA	Inorganic ion transport and metabolism [P]	0.83
COG0433	Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains	Replication, recombination and repair [L]	0.83
COG0530	Ca2+/Na+ antiporter	Inorganic ion transport and metabolism [P]	0.83
COG1788	Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit	Lipid transport and metabolism [I]	0.83
COG2057	Acyl-CoA:acetate/3-ketoacid CoA transferase, beta subunit	Lipid transport and metabolism [I]	0.83
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.83
COG2272	Carboxylesterase type B	Lipid transport and metabolism [I]	0.83
COG2518	Protein-L-isoaspartate O-methyltransferase	Posttranslational modification, protein turnover, chaperones [O]	0.83
COG3005	Tetraheme cytochrome c subunit NapC of nitrate or TMAO reductase	Energy production and conversion [C]	0.83
COG3011	Predicted thiol-disulfide oxidoreductase YuxK, DCC family	General function prediction only [R]	0.83
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.83
COG3672	Predicted transglutaminase-like protein	Posttranslational modification, protein turnover, chaperones [O]	0.83
COG4122	tRNA 5-hydroxyU34 O-methylase TrmR/YrrM	Translation, ribosomal structure and biogenesis [J]	0.83
COG4123	tRNA1(Val) A37 N6-methylase TrmN6	Translation, ribosomal structure and biogenesis [J]	0.83
COG4670	Acyl CoA:acetate/3-ketoacid CoA transferase	Lipid transport and metabolism [I]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.24 %
All Organisms	root	All Organisms	48.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.24 %
cellular organisms	root	All Organisms → cellular organisms	48.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.24 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	48.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.24 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	26.45 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.24 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	19.83 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.83 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.24 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	10.74 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.48 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.83 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.24 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	7.44 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.48 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.83 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	0.83 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.24 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	7.44 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.48 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.83 %
Methylocystis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis	0.83 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.24 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.48 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.83 %
unclassified Methylocystis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis	0.83 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.83 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.24 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.48 %
Methylocystis sp. H62	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis → Methylocystis sp. H62	0.83 %
Bradyrhizobium sp. JYMT SZCCT0428	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0428	0.83 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.83 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2209111022\|2221197770	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10005164	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3573	Open in IMG/M
3300000717\|JGI12543J11896_106203	Not Available	502	Open in IMG/M
3300000734\|JGI12535J11911_1001495	All Organisms → cellular organisms → Bacteria → Proteobacteria	2624	Open in IMG/M
3300000890\|JGI11643J12802_10830797	Not Available	747	Open in IMG/M
3300000955\|JGI1027J12803_102093030	Not Available	887	Open in IMG/M
3300004479\|Ga0062595_100382939	All Organisms → cellular organisms → Bacteria	998	Open in IMG/M
3300005093\|Ga0062594_102778183	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300005294\|Ga0065705_10159995	All Organisms → cellular organisms → Bacteria	1809	Open in IMG/M
3300005328\|Ga0070676_10793359	Not Available	698	Open in IMG/M
3300005332\|Ga0066388_100616100	Not Available	1706	Open in IMG/M
3300005332\|Ga0066388_100808632	All Organisms → cellular organisms → Bacteria → Proteobacteria	1529	Open in IMG/M
3300005332\|Ga0066388_106973015	Not Available	569	Open in IMG/M
3300005546\|Ga0070696_100753338	All Organisms → cellular organisms → Bacteria	798	Open in IMG/M
3300005617\|Ga0068859_101898145	Not Available	658	Open in IMG/M
3300005764\|Ga0066903_100328670	All Organisms → cellular organisms → Bacteria → Proteobacteria	2449	Open in IMG/M
3300005764\|Ga0066903_100517263	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2030	Open in IMG/M
3300005764\|Ga0066903_102387713	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1022	Open in IMG/M
3300005764\|Ga0066903_104706142	Not Available	726	Open in IMG/M
3300005764\|Ga0066903_108282888	Not Available	531	Open in IMG/M
3300006058\|Ga0075432_10125687	Not Available	967	Open in IMG/M
3300006058\|Ga0075432_10562583	Not Available	517	Open in IMG/M
3300006175\|Ga0070712_100244782	All Organisms → cellular organisms → Bacteria	1430	Open in IMG/M
3300006194\|Ga0075427_10099252	Not Available	541	Open in IMG/M
3300006844\|Ga0075428_100049522	All Organisms → cellular organisms → Bacteria → Proteobacteria	4609	Open in IMG/M
3300006844\|Ga0075428_102622855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	515	Open in IMG/M
3300006845\|Ga0075421_100377415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1707	Open in IMG/M
3300006845\|Ga0075421_100749899	Not Available	1129	Open in IMG/M
3300006846\|Ga0075430_100046222	All Organisms → cellular organisms → Bacteria → Proteobacteria	3677	Open in IMG/M
3300006847\|Ga0075431_100135944	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2534	Open in IMG/M
3300006847\|Ga0075431_100990701	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0428	808	Open in IMG/M
3300006852\|Ga0075433_10065676	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3182	Open in IMG/M
3300006853\|Ga0075420_100259224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1510	Open in IMG/M
3300006853\|Ga0075420_100935808	Not Available	746	Open in IMG/M
3300006914\|Ga0075436_100588852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	819	Open in IMG/M
3300006969\|Ga0075419_10159255	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1480	Open in IMG/M
3300007076\|Ga0075435_100103737	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2358	Open in IMG/M
3300009094\|Ga0111539_10005826	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	15931	Open in IMG/M
3300009094\|Ga0111539_10516423	Not Available	1391	Open in IMG/M
3300009100\|Ga0075418_10123025	All Organisms → cellular organisms → Bacteria	2756	Open in IMG/M
3300009100\|Ga0075418_10349713	Not Available	1578	Open in IMG/M
3300009100\|Ga0075418_10418115	Not Available	1435	Open in IMG/M
3300009147\|Ga0114129_13104526	Not Available	543	Open in IMG/M
3300009553\|Ga0105249_10202741	All Organisms → cellular organisms → Bacteria	1942	Open in IMG/M
3300009553\|Ga0105249_10365382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1465	Open in IMG/M
3300009553\|Ga0105249_11065350	All Organisms → cellular organisms → Bacteria	878	Open in IMG/M
3300010358\|Ga0126370_10060160	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2462	Open in IMG/M
3300010360\|Ga0126372_12341024	Not Available	584	Open in IMG/M
3300010361\|Ga0126378_13072981	Not Available	531	Open in IMG/M
3300010362\|Ga0126377_13539328	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis → Methylocystis sp. H62	505	Open in IMG/M
3300010376\|Ga0126381_101653419	All Organisms → cellular organisms → Bacteria	925	Open in IMG/M
3300012951\|Ga0164300_11009063	Not Available	536	Open in IMG/M
3300012971\|Ga0126369_13702476	Not Available	501	Open in IMG/M
3300012985\|Ga0164308_10292653	All Organisms → cellular organisms → Bacteria	1289	Open in IMG/M
3300012986\|Ga0164304_11254161	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300013308\|Ga0157375_12214167	Not Available	655	Open in IMG/M
3300014745\|Ga0157377_11286247	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300015372\|Ga0132256_101424826	Not Available	804	Open in IMG/M
3300015372\|Ga0132256_101630104	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
3300016294\|Ga0182041_10584235	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	980	Open in IMG/M
3300016341\|Ga0182035_10104127	All Organisms → cellular organisms → Bacteria	2086	Open in IMG/M
3300016341\|Ga0182035_10645497	All Organisms → cellular organisms → Bacteria	918	Open in IMG/M
3300016371\|Ga0182034_10276809	All Organisms → cellular organisms → Bacteria	1335	Open in IMG/M
3300016445\|Ga0182038_11822834	Not Available	549	Open in IMG/M
3300018067\|Ga0184611_1310439	Not Available	546	Open in IMG/M
3300018072\|Ga0184635_10014080	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2849	Open in IMG/M
3300018073\|Ga0184624_10099449	Not Available	1243	Open in IMG/M
3300018081\|Ga0184625_10073666	Not Available	1738	Open in IMG/M
3300018081\|Ga0184625_10407572	Not Available	701	Open in IMG/M
3300021078\|Ga0210381_10263978	Not Available	615	Open in IMG/M
3300021510\|Ga0222621_1028486	Not Available	1144	Open in IMG/M
3300021560\|Ga0126371_13632023	Not Available	520	Open in IMG/M
3300025939\|Ga0207665_10203477	Not Available	1444	Open in IMG/M
3300025939\|Ga0207665_11249882	Not Available	592	Open in IMG/M
3300025972\|Ga0207668_11157570	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300026800\|Ga0207742_101952	Not Available	2056	Open in IMG/M
3300026819\|Ga0207765_101381	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2724	Open in IMG/M
3300026831\|Ga0207738_103237	Not Available	1750	Open in IMG/M
3300026833\|Ga0207728_100687	All Organisms → cellular organisms → Bacteria → Proteobacteria	4612	Open in IMG/M
3300026839\|Ga0207764_118316	Not Available	632	Open in IMG/M
3300026852\|Ga0207838_100967	Not Available	2166	Open in IMG/M
3300026859\|Ga0207859_1005794	Not Available	1152	Open in IMG/M
3300026887\|Ga0207805_1003472	Not Available	1817	Open in IMG/M
3300026895\|Ga0207758_1016605	Not Available	719	Open in IMG/M
3300026921\|Ga0207860_1003287	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2435	Open in IMG/M
3300026941\|Ga0207741_1004262	Not Available	1764	Open in IMG/M
3300026979\|Ga0207817_1021648	Not Available	693	Open in IMG/M
3300026988\|Ga0207834_1011242	Not Available	1234	Open in IMG/M
3300026997\|Ga0207784_1026172	Not Available	601	Open in IMG/M
3300027014\|Ga0207815_1002046	Not Available	2994	Open in IMG/M
3300027024\|Ga0207819_1017144	Not Available	991	Open in IMG/M
3300027063\|Ga0207762_1032355	All Organisms → cellular organisms → Bacteria	795	Open in IMG/M
3300027680\|Ga0207826_1009087	Not Available	2695	Open in IMG/M
3300027680\|Ga0207826_1128630	Not Available	693	Open in IMG/M
3300027873\|Ga0209814_10246206	Not Available	775	Open in IMG/M
3300027907\|Ga0207428_10010949	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8068	Open in IMG/M
3300027907\|Ga0207428_10038201	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3903	Open in IMG/M
3300027907\|Ga0207428_10679089	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	738	Open in IMG/M
3300027907\|Ga0207428_10788456	Not Available	676	Open in IMG/M
3300027909\|Ga0209382_10657184	Not Available	1134	Open in IMG/M
3300028787\|Ga0307323_10326325	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300031170\|Ga0307498_10314881	Not Available	590	Open in IMG/M
3300031198\|Ga0307500_10070943	Not Available	884	Open in IMG/M
3300031199\|Ga0307495_10009269	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1398	Open in IMG/M
3300031200\|Ga0307496_10134435	Not Available	514	Open in IMG/M
3300031226\|Ga0307497_10012886	All Organisms → cellular organisms → Bacteria	2419	Open in IMG/M
3300031446\|Ga0170820_16124734	Not Available	643	Open in IMG/M
3300031469\|Ga0170819_14362500	All Organisms → cellular organisms → Bacteria → Acidobacteria	1340	Open in IMG/M
3300031573\|Ga0310915_10714212	All Organisms → cellular organisms → Bacteria	707	Open in IMG/M
3300031668\|Ga0318542_10548706	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300031719\|Ga0306917_10136940	All Organisms → cellular organisms → Bacteria	1803	Open in IMG/M
3300031719\|Ga0306917_11367373	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300031846\|Ga0318512_10688416	Not Available	524	Open in IMG/M
3300031944\|Ga0310884_10956385	Not Available	531	Open in IMG/M
3300031945\|Ga0310913_10806470	Not Available	662	Open in IMG/M
3300032001\|Ga0306922_10706386	Not Available	1061	Open in IMG/M
3300032076\|Ga0306924_11876867	All Organisms → cellular organisms → Bacteria → Proteobacteria	622	Open in IMG/M
3300032174\|Ga0307470_10339552	All Organisms → cellular organisms → Bacteria	1037	Open in IMG/M
3300032180\|Ga0307471_100657620	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1211	Open in IMG/M
3300032180\|Ga0307471_102919329	Not Available	607	Open in IMG/M
3300032261\|Ga0306920_104279803	Not Available	514	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	68.59%
Host-Associated	Host-Associated	31.41%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	62.81%
Plants	Host-Associated → Plants	31.41%
Aquatic	Environmental → Aquatic	5.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	62.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere	30.58%
Sediment	Environmental → Aquatic → Sediment	4.96%
Freshwater	Environmental → Aquatic → Freshwater	0.83%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	35.54%
Loam	Environmental → Terrestrial → Soil → Loam	27.27%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	27.27%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.96%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.31%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.83%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	27.27%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	23.97%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	16.53%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.31%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.65%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.65%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.83%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	23.97%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	23.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.44%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.79%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.13%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.31%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.31%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.48%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.48%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.65%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.65%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.83%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.83%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.83%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2209111022	Grass soil microbial communities from Rothamsted Park, UK - Chitin enrichment	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000717	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 68	Environmental	Open in IMG/M
3300000734	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006194	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021510	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_coex	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026800	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 43 (SPAdes)	Environmental	Open in IMG/M
3300026819	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 59 (SPAdes)	Environmental	Open in IMG/M
3300026831	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 9 (SPAdes)	Environmental	Open in IMG/M
3300026833	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 54 (SPAdes)	Environmental	Open in IMG/M
3300026839	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 52 (SPAdes)	Environmental	Open in IMG/M
3300026852	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 62 (SPAdes)	Environmental	Open in IMG/M
3300026859	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 25 (SPAdes)	Environmental	Open in IMG/M
3300026887	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 49 (SPAdes)	Environmental	Open in IMG/M
3300026895	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 12 (SPAdes)	Environmental	Open in IMG/M
3300026921	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 28 (SPAdes)	Environmental	Open in IMG/M
3300026941	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 39 (SPAdes)	Environmental	Open in IMG/M
3300026979	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 13 (SPAdes)	Environmental	Open in IMG/M
3300026988	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 5 (SPAdes)	Environmental	Open in IMG/M
3300026997	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 66 (SPAdes)	Environmental	Open in IMG/M
3300027014	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 4 (SPAdes)	Environmental	Open in IMG/M
3300027024	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 42 (SPAdes)	Environmental	Open in IMG/M
3300027063	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 37 (SPAdes)	Environmental	Open in IMG/M
3300027680	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031198	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S	Environmental	Open in IMG/M
3300031199	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_S	Environmental	Open in IMG/M
3300031200	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 9_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2222020826	2209111022	Grass Soil	VRLVASLIPRELEATATVTERMSDAQLEAIIARGIEGDLDPAAPDEDVQIIE
AF_2010_repII_A1DRAFT_100051643	3300000597	Forest Soil	MAMAWMYPVDFVKVVASLMPREAVVQAPAKVQLERMSDAQLDALIAQCLEGGLDPAATDEDAQIIQ*
JGI12543J11896_1062032	3300000717	Tropical Forest Soil	MTAAWTHPVEFVXVVASLMPRELEATTTVTERMSDEQLDAIIGRGLQSGLDPAATDEDAQIIE*
JGI12535J11911_10014953	3300000734	Tropical Forest Soil	MTAAWTHPVEFVRVVASLMPRELEATTTVTERMSDEQLDAIIGRGLQSGLDPAATDEDAQII
JGI11643J12802_108307972	3300000890	Soil	MTAAWTHPVEFVRLVASLMPRELEATTTPVMERMSDAQLEAIIAGGLQSGLDAAATDEDAQIIQ*
JGI1027J12803_1020930301	3300000955	Soil	MLYPVEFVRLVASLMPREPEATIAPVTVMERLSNAQLDALIAELQSGLDPATDEDAQKIQ
Ga0062595_1003829392	3300004479	Soil	MTMAWMYPVEFVRMVASLMPRELEATNTPVMERMSDAQLEAIIARGLQSGLDPAATD*
Ga0062594_1027781832	3300005093	Soil	MARRTMAMLYPVEFVRLVASLMPKEPQAAITPVVMERMSDAQLDALIARCIEDGLDPAATD*
Ga0065705_101599952	3300005294	Switchgrass Rhizosphere	MARRTMAMLYPVEFVRLVASLMPKEPEATITPVAIERMSDAQLDALIARCIEDGLDPAATD*
Ga0070676_107933591	3300005328	Miscanthus Rhizosphere	WMYPVEFVRMVASLMPRELEATNTPVMERMSDAQLEAIIARGLQSGLDPAATD*
Ga0066388_1006161001	3300005332	Tropical Forest Soil	MLYPAEFVRLAASLIPKEPEAITTPVIERMSNAQLDALIARCIEGGLDPAATDEDAQIIQ
Ga0066388_1008086322	3300005332	Tropical Forest Soil	MQATVNVNLERVSDAQLDAIIARGGLDPAAPDEDAQIIQ*
Ga0066388_1069730151	3300005332	Tropical Forest Soil	RAFGKPALETMAMLYPAECVRMVASLIPKEPEATTAPVMERLSNAQLDAMIAELQSGLDPAATD*
Ga0070696_1007533382	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MARRTMAMLYPVEFVRLVASLMPKEPEATITPVAMERMSNAQLDALIARCIEDGLDPAATD*
Ga0068859_1018981452	3300005617	Switchgrass Rhizosphere	MTMAWTDPVAYVRVVASLMPRELETTITPVTERMSDAQLEAIIARGIEDGLDPAATD*
Ga0066903_1003286706	3300005764	Tropical Forest Soil	MAMLYPVEFVRMVASLIPKEPEAITPPVMERLSNAQLDAIIALGIEGGLDSAASDEDAQRSARF*
Ga0066903_1005172632	3300005764	Tropical Forest Soil	LLIPRELEATIAPVTERMSNAQLEAIIARGIEGGLDPAATDEDAQIIQ*
Ga0066903_1023877132	3300005764	Tropical Forest Soil	VPKEMQATVNVNLERVSDAQLDAIIARGGLDPAAPDEDAQIIQ*
Ga0066903_1047061422	3300005764	Tropical Forest Soil	MVALLIPRELEATIPPVTERMSNAQLEAIIARGIEGGLDPAATDEDWQIIQ*
Ga0066903_1082828882	3300005764	Tropical Forest Soil	RPALETMAMLYPVEFVRLVASLIPKEPEATTATPVERLSDAQLDVMIARCIEEGGLDPASDG*
Ga0075432_101256873	3300006058	Populus Rhizosphere	MTAAWTHPVEFVRLVASLMPRELEATTTPVMERMSDAQLEAIIARGLQSGLDAAATDEDAQIIQ*
Ga0075432_105625831	3300006058	Populus Rhizosphere	YPVEFVRLVASLMPKEPEATIAPVTVMERMSDAQLDALIAQCIERGLDPAATD*
Ga0070712_1002447822	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MARRTMAMLYPVEFVRLVASLMPKEPEAPITPVVMERMSDAQLDALIARCIEDGLDPAATD*
Ga0075427_100992521	3300006194	Populus Rhizosphere	FVRVVAGLMPKEMQATVTTVHLERMSDDQLLEIIRQSGLDPAATDEDAQIIQ*
Ga0075428_1000495221	3300006844	Populus Rhizosphere	MTAAWTRPVEFVRLVASLMPRELEATTTPVMERMSDAQLEAIIARGLQSGLDAAATDEDAQIIQ*
Ga0075428_1026228552	3300006844	Populus Rhizosphere	SLIPRELEATTTVHMMERMSDAQLEAMIARDIEGGLDPAAADEDAQMGPV*
Ga0075421_1003774151	3300006845	Populus Rhizosphere	GKPALETMAMLYPVEFVRLVASLMPKEPEATITPVVMERMSDAQLDALIAQCIEGGLDPAATD*
Ga0075421_1007498992	3300006845	Populus Rhizosphere	PVEFVRLVASLMPRELEATTTPVMERMSDAQLEAIIARGLQSGLDAAATDEDAQIIQ*
Ga0075430_1000462223	3300006846	Populus Rhizosphere	MLYPVEFVRLVASLMPKEPEATIAPVVMERMSDAQLDALIAQCIEGGLDPAATDEDA*
Ga0075431_1001359444	3300006847	Populus Rhizosphere	FGKPALETMAMLYPVEFVRLVASLMPKEPEATIAPVTVMERMSDAQLDALIAQCIEGGLDPAATD*
Ga0075431_1009907012	3300006847	Populus Rhizosphere	AAWTDPVAYVRVVASLIPRELEATTTVHMMERMSDAQLEAMIARDIEGGLDPAAADEDAQMGPV*
Ga0075433_100656762	3300006852	Populus Rhizosphere	VRVVASLIPRELEANTTVMERMSDAQLGAIIARGLQSELDPAATDEDAQIIQ*
Ga0075420_1002592241	3300006853	Populus Rhizosphere	MLYPVEFVRLVASLMPKEPEATIAPVVMERMSDAQLDALIAQCIEGGLDPAATD*
Ga0075420_1009358081	3300006853	Populus Rhizosphere	ASLMPRELEATTTPVMERMSDAQLEAIIARGLQSGLDPAATDEDAQIIQ*
Ga0075436_1005888522	3300006914	Populus Rhizosphere	PVAYVRVVASLIPRELETTITPVTERMSDAQLDAIIARGLEGGFDPAATD*
Ga0075419_101592551	3300006969	Populus Rhizosphere	ETMAMLYPVEFVRLVASLMPKEPEATITPVVMERMSDAQLDALIAQCIEGGLDPAATD*
Ga0075435_1001037372	3300007076	Populus Rhizosphere	MARRTMAMLYPVEFVRLVASLMPKEPEATITPVAIERMSDAQLDALIARCIEDGLDPAATRVDHSVDGRASRRT*
Ga0111539_100058261	3300009094	Populus Rhizosphere	AFGKPALETMAMLYPVEFVRLVASLMPKEPEATITPVVMERMSDAQLDALIAQCIEGGLDPAATD*
Ga0111539_105164234	3300009094	Populus Rhizosphere	VRVVAGLMPKEMQATVTTVHLERMSDDQLLEIIRQSGLDPAATDEDAQIIQ
Ga0075418_101230254	3300009100	Populus Rhizosphere	AMLYPVEFVRLVASLMPKEPEATIAPVVMERMSDAQLDALIAQCIEGGLDPAATD*
Ga0075418_103497132	3300009100	Populus Rhizosphere	MPRELEATTTPVMERMSDAQLEAIIARGLQSGLDAAATDEDAQIIQ*
Ga0075418_104181152	3300009100	Populus Rhizosphere	AFGKPALETMAMLYPVEFVRMVASLMPKEPEATITPVVMERMSDAQLDALIAQCIEDGLDPAATD*
Ga0114129_131045262	3300009147	Populus Rhizosphere	VRVVAGLMPKEMQATVTTVHLERMSDDQLLEIIRQSGLDPAATDEDAQIIQ*
Ga0105249_102027411	3300009553	Switchgrass Rhizosphere	MAYSVAYVRVVASLVPRELEAIITPVTKRMSDAQLEAIIARGIEGGLDPAAPDQDAQIIQ
Ga0105249_103653821	3300009553	Switchgrass Rhizosphere	MTMAWMYPVEFVRMVASLMPRELEATNTPVMERMSDAQLEAIIARGIQSGLDPAATD*
Ga0105249_110653501	3300009553	Switchgrass Rhizosphere	MAMLYPVEFVRLVASLMPKEPEATITPVAIERMSDAQLDALIARCIEDGLDPAATD*
Ga0126370_100601603	3300010358	Tropical Forest Soil	MAMAWMYPVDFVKVVASLMPREAVVQATANVQLERMSDAQLDALIAQCLEGGLDPAATDEDAQIIQ*
Ga0126372_123410242	3300010360	Tropical Forest Soil	MTAAWTHPIEFVRVVASLIPRELEATIAPVTERMSNAQLEAIIARGIEGGLDPAATDEDAQIIQ*
Ga0126378_130729811	3300010361	Tropical Forest Soil	ALETMAMLYPAEFVRVAASLIPRELETTITPVAERISDAQLDALIARYIIEGGLDPADG*
Ga0126377_135393282	3300010362	Tropical Forest Soil	MAWTDQVALVRLAASLIPKEPEATIAPVIERMSNAQLDAMIAELQSGLDPAA
Ga0126381_1016534191	3300010376	Tropical Forest Soil	LIPRELEATIAPVTERMSNAQLEAIIARGIEGGLDPAATDEDAQIIQ*
Ga0164300_110090632	3300012951	Soil	MAMLYPVEFVRVVASLIPRGVEATTTPVMERMSNAQLEAIIARGIEGGLDPGAPDEDQ*
Ga0126369_137024761	3300012971	Tropical Forest Soil	AFGKPALETMAMLYPAEFVRMVASLIPKEPEATTPPPVMERLSNAQLDALIARCIEGGVDPASDG*
Ga0164308_102926532	3300012985	Soil	MAMLYPVEFVRLVASLMPKEPEATITPVAMERMSDAQLDALIAQCIEGGLDPAATD*
Ga0164304_112541612	3300012986	Soil	ALETMAMLYPVEFVRLVASLMPKEPEATITPVVMGRMSDAQLDALIAQCIEDGLDPAATD
Ga0157375_122141672	3300013308	Miscanthus Rhizosphere	GKAMARRTMAMLYPVEFVRLVASLMPKEPEATITPVAIERMSDAQLDALIARCIEDGLDPAATD*
Ga0157377_112862472	3300014745	Miscanthus Rhizosphere	MAMLYPVEFVRLVASLMPKEPEATITPVAMERLSNAQLDALIAQCIEDGLDPAATD*
Ga0132256_1014248262	3300015372	Arabidopsis Rhizosphere	WQVFGKPALETMAMLYPVEFVRMAASLMPRELEATTTPVMERLSDAQLDAMIARCIEEGGLDRAATD*
Ga0132256_1016301041	3300015372	Arabidopsis Rhizosphere	MAMLYPVEFVRVIASLVPRELEATITPVSDRMSSAQLEALIARDLQGGLGPAATDEDPQIVQ*
Ga0182041_105842352	3300016294	Soil	MLYPVEFVRLAASLVAKEPEVTTPLVMERLSNAQLDAMIARCIEEGGLDPASDG
Ga0182035_101041271	3300016341	Soil	MTAAWTDPVAFVRVVASLIPRELEATITPVERMSDAQLEAIIARGLQSGLDPAATDED
Ga0182035_106454974	3300016341	Soil	RVVASLIPRELEATITPVERMSDAQLEVIIARGLQSGLDPAETDEDEQIIQ
Ga0182034_102768094	3300016371	Soil	AMEHPVEFVRLVASLIPRELEATIPPVAERMSDAQLEAIIARGIEGDLDPAATDEDEQII
Ga0182038_118228341	3300016445	Soil	MTAAWTYPVEFVRVVASLMPRELEATITPVVSDAQLEAIIARGLQSGLDPAATDEDEQ
Ga0184611_13104391	3300018067	Groundwater Sediment	MTAAITDPVSYVRMVASLMPREIEATTTPVMEHMSDAQLEAIIARGIEGGLDPAAPDQDAQIIE
Ga0184635_100140802	3300018072	Groundwater Sediment	MTAAWTHPVEFVRVVASLIPRELEATITPVTERMSDAQLETIIARGLQSGLDPAATDEDAKIIQ
Ga0184624_100994492	3300018073	Groundwater Sediment	MTAAWTHPLEFVRVVASLIQRELEATITPVTERMSNAELEAIIARGLQSGLDPAATAEDAKIIQ
Ga0184625_100736664	3300018081	Groundwater Sediment	MTAAWTHPLEFVRVVASLIPRELEATITPVTERMSNAELEAIIARGLQSGLDPAATDEDAKIIQ
Ga0184625_104075723	3300018081	Groundwater Sediment	VSYVRMVASLMPREIEATITPVTERMSDAQLEAIIARGIEGGLDPAAPDQDAQIIE
Ga0210381_102639781	3300021078	Groundwater Sediment	PVEFVRVVASLIPRELEATITPVTERMSDAQLEAIIARGIEGGLDPAAPDQDAQITQ
Ga0222621_10284862	3300021510	Groundwater Sediment	TAAWTHPVEFVRVVASLIPRELEATITPVTERMSDAQLEAIIARGIEGGLDPGAPDQDAQIIQ
Ga0126371_136320231	3300021560	Tropical Forest Soil	MVALLIPRELEATIPPVTERMSNAQLEAIIARGIEGGLDPAATDEDWQIIQ
Ga0207665_102034771	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MAMLYPVEFVRLVASLMPKEPEATITPVAIERMSDAQLDALIARCIEDGLDPAATD
Ga0207665_112498822	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MTMAWMYPVEFVRMVASLMPRELEATNTPVMERMSDAQLEAIIARGLQSGLDPAATDEDAQIIQ
Ga0207668_111575701	3300025972	Switchgrass Rhizosphere	MTMAWMYPVEFVRMVASLMPRELEATNTPVMERMSDAQLEAIIARGLQSGLDPAATD
Ga0207742_1019522	3300026800	Tropical Forest Soil	MRVVASLMPRELGATTPVTERISDSQLDAIIGRGLQSGLDPAATDEDAQIIE
Ga0207765_1013811	3300026819	Tropical Forest Soil	MTAAWTHPVEFVRVVASLMPRELEATTTVTERMSDEQLDAIIGRGLQSGLDPAATDEDAQIIE
Ga0207738_1032371	3300026831	Tropical Forest Soil	ASLMPRELEATTTVTERMSDEQLDAIIGRGLQSGLDPAATDEDAQIIE
Ga0207728_1006872	3300026833	Tropical Forest Soil	MRVVASLMPRELEATTPVTERMSDEQLDAIIGRGLQSGLDPAATDEDAQIIQ
Ga0207764_1183162	3300026839	Tropical Forest Soil	MRVVASLMPRELEATTPVTERISDSQLDAIIGRGLQSGLDPAAT
Ga0207838_1009672	3300026852	Tropical Forest Soil	MRVVASLMPRELEATTPVTERISDSQLDAIIGRGLQSGLDPAATDEDAQIIQ
Ga0207859_10057942	3300026859	Tropical Forest Soil	MTAAWTHPVEFVRVVASLMPRELEATTTVTERMSDEQLDAIIGRGLQSGLDPAATDEDAQ
Ga0207805_10034721	3300026887	Tropical Forest Soil	MTAAWTHPVEFVRVVASLMPRELEATITPVTERMSDAQLEAIIARGLQSGLDPAATDEDAQIIQ
Ga0207758_10166053	3300026895	Tropical Forest Soil	MRVVASLMPRELEATTPVTERMSNTQLDAIIARGLQSGLDPAATDEDEQIIQ
Ga0207860_10032873	3300026921	Tropical Forest Soil	LVRVVASLMPRELEATTPVTERMSNTQLDAIIARGLQSGLDPAATDEDEQIIQ
Ga0207741_10042622	3300026941	Tropical Forest Soil	MHPVELVRVVASLMPRELEATTPVTERMSNTQLDAIIARGLQSGLDPAATDEDEQIIQ
Ga0207817_10216481	3300026979	Tropical Forest Soil	MRVVASLMPRELGATTPVTERISDSQLDAIIGRGLQSGLDPAATD
Ga0207834_10112422	3300026988	Tropical Forest Soil	MRVVASLMPRELEATTTVTERMSDEQLDAIIGRGLQSGLDPAATDEDAQIIE
Ga0207784_10261721	3300026997	Tropical Forest Soil	MRVVASLMPRELEATTPVTERISDSQLDAIIGRGLQSGLDPAA
Ga0207815_10020462	3300027014	Tropical Forest Soil	MTAAWTHPVEFVRVVASLIPRELEATTTPVTERMSIAQLEAIIARGLQSGLDPAATDEDEQIIQ
Ga0207819_10171441	3300027024	Tropical Forest Soil	MRVVASLMPRELEATTPVTERISDSQLDAIIGRGLQSGLDPAATDEDA
Ga0207762_10323551	3300027063	Tropical Forest Soil	MTAAWTHPVEFVRVVASLMPRELEATTTVTERMSDEQLDAIIGRGLQSGLDPA
Ga0207826_10090874	3300027680	Tropical Forest Soil	MTAAWTHPVEFVRVVASLMPRELEATTTVTERMSDEQLDAIIGRGLQSGLDPAATDEDAQIIQ
Ga0207826_11286302	3300027680	Tropical Forest Soil	MRVVASLMPRELEATTPVTERISDSQLDAIIGRGLQSGLDPAATDEDAQIIE
Ga0209814_102462061	3300027873	Populus Rhizosphere	MTAAWTHPVEFVRLVASLMPRELEATTTPVMERMSDAQLEAIIARGIEGGLDLAATDEDAQIIQ
Ga0207428_100109493	3300027907	Populus Rhizosphere	MLYPVEFVRLVASLMPKEPEATIAPVVMERMSDAQLDALIAQCIEGGLDPAATD
Ga0207428_100382013	3300027907	Populus Rhizosphere	MTAAWTHPVEFVRLVASLMPRELEATTTPVMERMSDAQLEAIIARGLQSGLDAAATDEDAQIIQ
Ga0207428_106790892	3300027907	Populus Rhizosphere	PVEFVRLVASLMPKEPEATIAPVTVMERMSDAQLDALIAQCIEGGLDPAATD
Ga0207428_107884561	3300027907	Populus Rhizosphere	MPKEMQATVTTVHLERMSDDQLLEIIRQSGLDPAATDEDAQIIQ
Ga0209382_106571841	3300027909	Populus Rhizosphere	LVASLMPRELEATTTPVMERMSDAQLEAIIARGLQSGLDAAATDEDAQIIQ
Ga0307323_103263251	3300028787	Soil	MTAAWTHPVEFVRVVASLIPRELEATATVTERMSDEQLEAIIARGIEGGLDPAAPDQDAQIIQ
Ga0307498_103148812	3300031170	Soil	FVRVVASLIPRELEATATVTERMSDAQLEAIIARGIEGGLDPAAPDQDAQIIQ
Ga0307500_100709433	3300031198	Soil	MLYPVEFVRLVASLMPKEPEATITPVVMERMSDAQLEAIIAQGLQNGLDPASDG
Ga0307495_100092693	3300031199	Soil	MTAAWTHPVEFVRVVASLIPRELEATITPVTERMSDAQLDAIIARGIEGGLDPAAPDQDAQIIQ
Ga0307496_101344351	3300031200	Soil	VEFVRLVASLMPKEPEVTIAPVIERMSDAQLEAIIAQGLQNGLDPASDG
Ga0307497_100128861	3300031226	Soil	FGKPALMTAAWTHPVEFVRVVASLIPRELEATITPVTERMSEAQLDAIIARGIEGGLDPAAPED
Ga0170820_161247342	3300031446	Forest Soil	VPRELEATTTVHMERMSDAQLEALIARGIEGGLDPAATDEDAQTGALPLSH
Ga0170819_143625001	3300031469	Forest Soil	VVASLVPRELEATTTVHMERMSDAQLEALIARDIEGGLDPAATDEDAQMGALPLSH
Ga0310915_107142123	3300031573	Soil	VASLIPRELEATIPPVAERMSDAQLKAIIARGIEDDLDPAATDDDEQIIQ
Ga0318542_105487061	3300031668	Soil	VAWTHPVEFVRLVASLIPRELEATIPPVAERMSDAQLEAIIARGLQSGLDPAETDEDEQIIQ
Ga0306917_101369401	3300031719	Soil	SLIPREFEATTPVTPERMSDAQLEAIIARGLQSGLDPAATDEDEQIIQ
Ga0306917_113673732	3300031719	Soil	MALLYPVEFVRLVASLIPRELEATIPPVAERMSDAQLEAIIARGIEGDLDPAATDEDEQIIQ
Ga0318512_106884163	3300031846	Soil	MTAAWTDPVAFVRVVASLIPRELEATITPVAERMSDAQLEAIIARGIEGGLDPAATDED
Ga0310884_109563852	3300031944	Soil	MLYPVEFVRLVASLMPKEPEATITTPAMERLSNAQLDALIAQCIEDGLDPAATD
Ga0310913_108064701	3300031945	Soil	GKLALMTAAWTDPVAFVRVVASLIPRELEATITPVERMSDAQLEAIIARGLQSGLDPAATDEDEQIIQ
Ga0306922_107063862	3300032001	Soil	MEHPVEFVRLVASLIPRELEATIPPVAERMSDAQLEAIIARGIEGDLDPAATDEDEQIIQ
Ga0306924_118768672	3300032076	Soil	MTAAWTHPVEFVRVIASLMPRELEATTTVTGRMSDAQLDAIIARGLQSGLDPAATDVIQ
Ga0307470_103395521	3300032174	Hardwood Forest Soil	MARRTMAMLYPVEFVRLVASLMPKEPEATIAPVTVMERMSDAQLDALIAQCIEGGLDPASDG
Ga0307471_1006576201	3300032180	Hardwood Forest Soil	RTMAMLYPVEFVRLVASLMPKEPEATITPVAIERMSDAQLDALIARCIEDES
Ga0307471_1029193292	3300032180	Hardwood Forest Soil	MARRTMAMLYPVEFVRLVASLMPKEPEAPITPVAMERMSDAQLDALIAQCIEGGLDPAAT
Ga0306920_1042798032	3300032261	Soil	MAWTDPVAFVRLVASLIPRELEAPITPVAERMSDAQLIAIARGLQSGLDPAATDEDEQII

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F072609

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences