Metagenome / Metatranscriptome Family F072643

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F072643
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	50 residues
Representative Sequence	MFWLWLWMALTAGVMITSHITMARGDKRPSRALLEAIVANLIFGALLVWRSL
Number of Associated Samples	77
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	71.90 %
% of genes near scaffold ends (potentially truncated)	31.40 %
% of genes from short scaffolds (< 2000 bps)	85.12 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (74.380 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment (29.752 % of family members)
Environment Ontology (ENVO)	Unclassified (43.802 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Sediment (non-saline) (29.752 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 53.75% β-sheet: 0.00% Coil/Unstructured: 46.25%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.55
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.55
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF09361	Phasin_2	6.61
PF02771	Acyl-CoA_dh_N	1.65
PF00313	CSD	1.65
PF08734	GYD	1.65
PF00872	Transposase_mut	1.65
PF00589	Phage_integrase	0.83
PF00239	Resolvase	0.83
PF04226	Transgly_assoc	0.83
PF13493	DUF4118	0.83
PF11149	DUF2924	0.83
PF11737	DUF3300	0.83
PF13560	HTH_31	0.83
PF13202	EF-hand_5	0.83
PF01464	SLT	0.83
PF00325	Crp	0.83
PF09913	DUF2142	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	1.65
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	1.65
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	1.65
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.83
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.83
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.38 %
All Organisms	root	All Organisms	25.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.38 %
cellular organisms	root	All Organisms → cellular organisms	25.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.38 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	25.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.38 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	24.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.38 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	21.49 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.38 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	11.57 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	5.79 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.38 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.79 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4.13 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	1.65 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.38 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.79 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.31 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	1.65 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.38 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.79 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	1.65 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.83 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.83 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.38 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.79 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	1.65 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	0.83 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.83 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004152\|Ga0062386_100499181	Not Available	988	Open in IMG/M
3300005436\|Ga0070713_100835424	Not Available	884	Open in IMG/M
3300005439\|Ga0070711_100212034	Not Available	1500	Open in IMG/M
3300005439\|Ga0070711_100843652	Not Available	779	Open in IMG/M
3300005553\|Ga0066695_10700007	Not Available	594	Open in IMG/M
3300006028\|Ga0070717_11607551	Not Available	589	Open in IMG/M
3300006041\|Ga0075023_100596624	Not Available	513	Open in IMG/M
3300006047\|Ga0075024_100261324	Not Available	835	Open in IMG/M
3300006047\|Ga0075024_100342362	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	745	Open in IMG/M
3300006057\|Ga0075026_100161622	Not Available	1155	Open in IMG/M
3300006057\|Ga0075026_100244284	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	961	Open in IMG/M
3300006057\|Ga0075026_100847973	Not Available	558	Open in IMG/M
3300006057\|Ga0075026_100961869	Not Available	529	Open in IMG/M
3300006059\|Ga0075017_100394081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	1037	Open in IMG/M
3300006059\|Ga0075017_100847839	Not Available	708	Open in IMG/M
3300006086\|Ga0075019_10501448	Not Available	753	Open in IMG/M
3300006102\|Ga0075015_100385767	Not Available	788	Open in IMG/M
3300006174\|Ga0075014_100068272	Not Available	1580	Open in IMG/M
3300006174\|Ga0075014_100099413	Not Available	1353	Open in IMG/M
3300006174\|Ga0075014_100135460	Not Available	1188	Open in IMG/M
3300006175\|Ga0070712_100099307	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2148	Open in IMG/M
3300006176\|Ga0070765_101471241	Not Available	641	Open in IMG/M
3300006806\|Ga0079220_11608499	Not Available	563	Open in IMG/M
3300006954\|Ga0079219_10311386	Not Available	983	Open in IMG/M
3300010048\|Ga0126373_10361461	All Organisms → cellular organisms → Bacteria → Proteobacteria	1467	Open in IMG/M
3300010154\|Ga0127503_10962347	Not Available	725	Open in IMG/M
3300012189\|Ga0137388_11759519	Not Available	553	Open in IMG/M
3300012198\|Ga0137364_10248302	Not Available	1314	Open in IMG/M
3300012199\|Ga0137383_10381711	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1032	Open in IMG/M
3300012200\|Ga0137382_10092732	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1979	Open in IMG/M
3300012206\|Ga0137380_10122737	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	2373	Open in IMG/M
3300012206\|Ga0137380_11050948	Not Available	695	Open in IMG/M
3300012207\|Ga0137381_11020556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	713	Open in IMG/M
3300012207\|Ga0137381_11304310	Not Available	619	Open in IMG/M
3300012208\|Ga0137376_11774295	Not Available	508	Open in IMG/M
3300012209\|Ga0137379_10083671	Not Available	3069	Open in IMG/M
3300012209\|Ga0137379_10164281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2132	Open in IMG/M
3300012285\|Ga0137370_10299183	Not Available	961	Open in IMG/M
3300012359\|Ga0137385_11008273	Not Available	687	Open in IMG/M
3300012361\|Ga0137360_11698729	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	537	Open in IMG/M
3300016319\|Ga0182033_10315165	Not Available	1296	Open in IMG/M
3300016404\|Ga0182037_10465133	Not Available	1054	Open in IMG/M
3300016422\|Ga0182039_10046497	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2923	Open in IMG/M
3300016422\|Ga0182039_11187356	Not Available	689	Open in IMG/M
3300016422\|Ga0182039_12001384	Not Available	533	Open in IMG/M
3300017822\|Ga0187802_10001622	All Organisms → cellular organisms → Bacteria → Proteobacteria	6128	Open in IMG/M
3300017822\|Ga0187802_10002719	All Organisms → cellular organisms → Bacteria	5070	Open in IMG/M
3300017822\|Ga0187802_10009489	Not Available	3106	Open in IMG/M
3300017822\|Ga0187802_10010646	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2962	Open in IMG/M
3300017822\|Ga0187802_10011768	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2847	Open in IMG/M
3300017822\|Ga0187802_10014618	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2609	Open in IMG/M
3300017822\|Ga0187802_10039195	Not Available	1710	Open in IMG/M
3300017822\|Ga0187802_10050308	Not Available	1521	Open in IMG/M
3300017822\|Ga0187802_10132657	Not Available	947	Open in IMG/M
3300017822\|Ga0187802_10143227	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	911	Open in IMG/M
3300017823\|Ga0187818_10032897	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	2227	Open in IMG/M
3300017823\|Ga0187818_10280661	Not Available	730	Open in IMG/M
3300017823\|Ga0187818_10391251	Not Available	617	Open in IMG/M
3300017924\|Ga0187820_1030347	Not Available	1399	Open in IMG/M
3300017924\|Ga0187820_1047581	Not Available	1153	Open in IMG/M
3300017924\|Ga0187820_1076795	Not Available	935	Open in IMG/M
3300017926\|Ga0187807_1298497	Not Available	535	Open in IMG/M
3300017930\|Ga0187825_10045230	Not Available	1490	Open in IMG/M
3300017932\|Ga0187814_10224887	Not Available	708	Open in IMG/M
3300017933\|Ga0187801_10011007	Not Available	2963	Open in IMG/M
3300017933\|Ga0187801_10046159	Not Available	1572	Open in IMG/M
3300017933\|Ga0187801_10143475	Not Available	927	Open in IMG/M
3300017933\|Ga0187801_10198758	Not Available	794	Open in IMG/M
3300017936\|Ga0187821_10371191	Not Available	581	Open in IMG/M
3300017937\|Ga0187809_10190753	Not Available	723	Open in IMG/M
3300017937\|Ga0187809_10373700	Not Available	539	Open in IMG/M
3300017942\|Ga0187808_10321056	All Organisms → cellular organisms → Bacteria → Proteobacteria	700	Open in IMG/M
3300017943\|Ga0187819_10014934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4447	Open in IMG/M
3300017943\|Ga0187819_10677972	Not Available	582	Open in IMG/M
3300017955\|Ga0187817_10432571	Not Available	839	Open in IMG/M
3300017955\|Ga0187817_10593463	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	707	Open in IMG/M
3300017955\|Ga0187817_10675426	Not Available	659	Open in IMG/M
3300017993\|Ga0187823_10245825	Not Available	603	Open in IMG/M
3300017993\|Ga0187823_10263012	Not Available	588	Open in IMG/M
3300017995\|Ga0187816_10086428	Not Available	1338	Open in IMG/M
3300018001\|Ga0187815_10275775	Not Available	712	Open in IMG/M
3300019888\|Ga0193751_1011998	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4525	Open in IMG/M
3300020580\|Ga0210403_10303146	Not Available	1309	Open in IMG/M
3300020581\|Ga0210399_10127743	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2092	Open in IMG/M
3300020583\|Ga0210401_11216169	Not Available	612	Open in IMG/M
3300024227\|Ga0228598_1100853	Not Available	583	Open in IMG/M
3300025898\|Ga0207692_10583213	Not Available	717	Open in IMG/M
3300025915\|Ga0207693_10058957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3007	Open in IMG/M
3300025916\|Ga0207663_10618730	Not Available	852	Open in IMG/M
3300026552\|Ga0209577_10394032	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1000	Open in IMG/M
3300027070\|Ga0208365_1029476	Not Available	721	Open in IMG/M
3300027070\|Ga0208365_1031142	Not Available	703	Open in IMG/M
3300027090\|Ga0208604_1024898	Not Available	566	Open in IMG/M
3300027698\|Ga0209446_1162923	Not Available	575	Open in IMG/M
3300027824\|Ga0209040_10376450	Not Available	666	Open in IMG/M
3300027824\|Ga0209040_10433280	Not Available	603	Open in IMG/M
3300027898\|Ga0209067_10559112	Not Available	654	Open in IMG/M
3300027911\|Ga0209698_11119575	Not Available	583	Open in IMG/M
3300027915\|Ga0209069_10454337	Not Available	713	Open in IMG/M
3300031128\|Ga0170823_12461992	Not Available	724	Open in IMG/M
3300031231\|Ga0170824_109399635	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	943	Open in IMG/M
3300031231\|Ga0170824_110554076	Not Available	579	Open in IMG/M
3300031231\|Ga0170824_126195382	Not Available	759	Open in IMG/M
3300031469\|Ga0170819_14716814	Not Available	597	Open in IMG/M
3300031708\|Ga0310686_102693991	Not Available	1217	Open in IMG/M
3300031708\|Ga0310686_107391470	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1529	Open in IMG/M
3300031708\|Ga0310686_112629876	Not Available	530	Open in IMG/M
3300031708\|Ga0310686_115337133	Not Available	1660	Open in IMG/M
3300031708\|Ga0310686_119084279	Not Available	1611	Open in IMG/M
3300031744\|Ga0306918_10282207	Not Available	1275	Open in IMG/M
3300031751\|Ga0318494_10698969	Not Available	593	Open in IMG/M
3300031879\|Ga0306919_10015484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4464	Open in IMG/M
3300031896\|Ga0318551_10778269	Not Available	556	Open in IMG/M
3300031942\|Ga0310916_10192177	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1705	Open in IMG/M
3300031962\|Ga0307479_11695523	Not Available	586	Open in IMG/M
3300031962\|Ga0307479_11786942	Not Available	567	Open in IMG/M
3300032042\|Ga0318545_10327709	Not Available	551	Open in IMG/M
3300032060\|Ga0318505_10353873	Not Available	694	Open in IMG/M
3300032180\|Ga0307471_100585359	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1274	Open in IMG/M
3300032180\|Ga0307471_101277098	Not Available	897	Open in IMG/M
3300032515\|Ga0348332_13534291	Not Available	735	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.17%
Host-Associated	Host-Associated	0.83%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	51.24%
Aquatic	Environmental → Aquatic	47.93%
Plants	Host-Associated → Plants	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	50.41%
Freshwater	Environmental → Aquatic → Freshwater	33.88%
Sediment	Environmental → Aquatic → Sediment	14.05%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	40.50%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	33.06%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	14.05%
Loam	Environmental → Terrestrial → Soil → Loam	9.92%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.83%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	29.75%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	19.83%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.36%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	14.05%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.61%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.31%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.31%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.65%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.65%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.83%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	29.75%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	14.05%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.61%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	4.13%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.31%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.31%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.48%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.65%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.83%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017993	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300024227	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4	Host-Associated	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027070	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF004 (SPAdes)	Environmental	Open in IMG/M
3300027090	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF016 (SPAdes)	Environmental	Open in IMG/M
3300027698	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062386_1004991812	3300004152	Bog Forest Soil	MLGLWLALTAAVIITSHITKARGDKWPPRALLEAMVANLIFGALLALRSL*
Ga0070713_1008354242	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	LWLALTAGVIITNHISMARGDKRPPRALCEAIVANLIFGALLAWRSL*
Ga0070711_1002120343	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MFWLWLWMALTTCIVVTRHISIARGDKLPSRALREAIVANLIFGALLVLRSL*
Ga0070711_1008436521	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MFWLWLRVALTGCIMITNHITLARGDKRRSRALWEAIVANLIFGALLAWRSL*
Ga0066695_107000073	3300005553	Soil	MFWLWLWIVLTGCIMFARHITMARGDKRPSRALWEAILANLIFGALLAW
Ga0070717_116075512	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	WLWLWMVLTAYVMITSHISIARGDKPSRALCEAIVANLIFGALLAWRSLVNS*
Ga0075023_1005966242	3300006041	Watersheds	MLGLWLGLTGCIIIANHISLARGDKPSRALWEAIVANL
Ga0075024_1002613241	3300006047	Watersheds	MFWLWLWLALTSCIMITNHISKARGDKPSRALWEAIVANLIFGALLVWRSL*
Ga0075024_1003423622	3300006047	Watersheds	FWLWLWLALTRCIIITNQISMARGDKRPSRALLEAIVANLIFGALLAWRAL*
Ga0075026_1001616222	3300006057	Watersheds	MFWLWMALTAGVMITSHITKARGDKWPSRALLEAIVANLIFGALLVLRSL*
Ga0075026_1002442842	3300006057	Watersheds	MFWLWMALTAGVMITSHMTMARGDKRPSRALLEAIVANLIFGALLV
Ga0075026_1008479731	3300006057	Watersheds	MFWLGLWMVLTGCIAITSHITIARGDKRPSRALREAIVANLIFGALLVWRSIG*
Ga0075026_1009618691	3300006057	Watersheds	MFWLWLWMALTAGVLVTSHITMARGDKRPSRALLEAIVANLIFGALLV
Ga0075017_1003940813	3300006059	Watersheds	MFWLWMALTAGVMITSHITKARGDKWPPRALLEAMVANLIFGALLALRSL*
Ga0075017_1008478391	3300006059	Watersheds	MFWLWVALTAGVMITSHINKARGDKRLSRALWEAIVANLIFGALLAWRSL*
Ga0075019_105014482	3300006086	Watersheds	MFWLWLWLALTAGVMITSHISMVRGDKRPSRALCEAIVGNLIFGALLAWRFL*
Ga0075015_1003857672	3300006102	Watersheds	MFWLWLWMVLTAAVMITSHINKARGDKPSRALWEAIVANLIFGALLAWRSL*
Ga0075014_1000682723	3300006174	Watersheds	MLGLWLALTAAVMITSHITKARGDKWPPRALLEAMVANLIFGALLALRSL*
Ga0075014_1000994132	3300006174	Watersheds	MFWLWLWMALTAGVMITSHITKARGDKWPPRALLEAMVANLIFGALLALRSL*
Ga0075014_1001354602	3300006174	Watersheds	MFWLWLWMALTSCIVITNHITKARGDKPPRALWEAIVANLIFGALLAWRSL*
Ga0070712_1000993071	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MFWLWLWLWVALTGCIMITNHITLARGDKRRSRALWEAIVANLIFGALLAWRSL*
Ga0070765_1014712412	3300006176	Soil	FWLWLWLLMTGGIVIANHISMARGDKQPSRALLEAIIANLIFGALLAWHSS*
Ga0079220_116084991	3300006806	Agricultural Soil	MFWLWLWVALTGCIMITNHITLARGDKRRSRALWEAIVANLIFGALLAWRSL*
Ga0079219_103113862	3300006954	Agricultural Soil	MGIGCVMITGQISMARGDKRPSRALCEAIVANLIFGALLAWRSLVNS*
Ga0126373_103614613	3300010048	Tropical Forest Soil	MFWYWLWLALTGCIMITNRISVARGDKPSRALWEAMVANLIFGALLAWRSL*
Ga0127503_109623471	3300010154	Soil	MFWLWLWMVLTACVIITNQISIARGDKRPSRALLEAIVANLIFGVLLAWRSIA*
Ga0137388_117595192	3300012189	Vadose Zone Soil	MFWLWLWMVLTSRIMITNQISIARGDKRPSRALWEAIVANLIFGALLAWRSL*
Ga0137364_102483021	3300012198	Vadose Zone Soil	MFWLGLWMALTAGVMITSHITKARGDKRPPRALLEAIVANLIFGALLAWRSL*
Ga0137383_103817112	3300012199	Vadose Zone Soil	MLGLWLGLTGCIVITSHISLARGDKRPSRALLEAIVANLIFGALLAWRSL*
Ga0137382_100927321	3300012200	Vadose Zone Soil	MFWLWLWLWLALSGCIIMTNHITMARGDKRLSRALWDAIVANLIFGAWLV
Ga0137380_101227371	3300012206	Vadose Zone Soil	MFWLWLWMALTAGVMITSHITTARGDKWPSRALLEALSPI*
Ga0137380_110509482	3300012206	Vadose Zone Soil	MFWLWLWLVLTRCIMITNHISTARGDKRPSRALWEAIIANLIFGALLAWRSL*
Ga0137381_110205562	3300012207	Vadose Zone Soil	MFWLWLWLALTAGVMITSRISKARGDKPSRALWEAIVANLIFGALLAWRNSH*
Ga0137381_113043103	3300012207	Vadose Zone Soil	MLGLWLGLTGCIVITSHISLARGDKRPSRALLEAIVANLIFGALLAWRNSH*
Ga0137376_117742952	3300012208	Vadose Zone Soil	MFWLWLWMVLTGCIMFTRHITMARGDKRLPRALWDAIVANLIFGALLVWRNSH*
Ga0137379_100836718	3300012209	Vadose Zone Soil	MLGLWLGLTGCIVITSQISLSRGDKRPSRALLEAIVANLIFGALLAWRNSH*
Ga0137379_101642812	3300012209	Vadose Zone Soil	MLGLGLTGCIVITSHISLARGDKRPSRALLEAIVANLIFSALLAWRSL*
Ga0137370_102991831	3300012285	Vadose Zone Soil	MALSGCIIMTNHITMARGDKRLSRALWDAIVANLIFGAWLVWRNSH*
Ga0137385_110082732	3300012359	Vadose Zone Soil	MFWYWLWLALTGCIMITNHITKARGDQRPSRALWEAIVANLIFGALLAWRSL*
Ga0137360_116987291	3300012361	Vadose Zone Soil	LWLWLALTSCIMITNQISMARGEKRPFRALLEAIVANLIFGALLAWRAL*
Ga0182033_103151651	3300016319	Soil	MFWYWLWLALTGCIMITNRISVARGDKPSRALWEAMVANLIFGALLAWRS
Ga0182037_104651331	3300016404	Soil	MFWYALWLALTGCIMITNRISVARGDKPSRALWEAMVANLIFGALLAWRSL
Ga0182039_100464976	3300016422	Soil	MFWYWLWLALTGCIMITNRISVARGDKPSRALFEAMVANLIFGALLAWRSL
Ga0182039_111873562	3300016422	Soil	MFWYWLWLALTGCIMITNRISVARGDKPSRALWEAMVANLIFGALLAWR
Ga0182039_120013842	3300016422	Soil	AGMFWYWLWLALTGCIMITNRISVARGDKPSRALWEAMVANLIFGALLAWRSL
Ga0187802_100016223	3300017822	Freshwater Sediment	MFWLLLWMALTACVMITSQISIARGDKPSRALLEAIVANLIFGALLAWRSL
Ga0187802_1000271911	3300017822	Freshwater Sediment	MFWLWMVLTGCVMITGQISMARGDKRPSRALCEAIVANLIFGALLVWRSL
Ga0187802_100094894	3300017822	Freshwater Sediment	MFWLWLWLALTSCIMITNHISKARGDKPSRALWEAIVANLIFGALLALRSL
Ga0187802_100106466	3300017822	Freshwater Sediment	MFWLWLWMALTAGVMITSHITMARGDKRPSRALLEAIVANLIFGALLVWRSL
Ga0187802_100117684	3300017822	Freshwater Sediment	MFWLWLWMALTAAVMITSHITRARGDKRLPRALLEAMVANLIFGALLALRSL
Ga0187802_100146184	3300017822	Freshwater Sediment	MFWLWLWLWLALTGCIMITNHITIARGDKRPSRALLEAIVANLIFGALLAWRSL
Ga0187802_100391953	3300017822	Freshwater Sediment	MLWLWLALTAGIMITSHITMARGDKRPPRALLEAIVANLIFGALLALRSL
Ga0187802_100503081	3300017822	Freshwater Sediment	MFWVWLWMVLTGCVMITGQISMARGDKPPSRALCEAIVANLIFGALLAWRSL
Ga0187802_101326573	3300017822	Freshwater Sediment	MSWFSLWLVLTASIMITNHISMARGDNRPSRALLEAIVANLIFGALLAWHSS
Ga0187802_101432272	3300017822	Freshwater Sediment	MFWLWMALTAGVMIASHITKARGDKWPSRALLEAIVANLIFGALLVLRSL
Ga0187818_100328972	3300017823	Freshwater Sediment	MFWLWLALTAGIMITSHISMVRGDKQASRALCEAIVANLIFGALLAWRFL
Ga0187818_102806612	3300017823	Freshwater Sediment	FWLWLWMALTAGVMITSHITMARGDKWPSRALLEAIVANLIYGALLVLRSL
Ga0187818_103912511	3300017823	Freshwater Sediment	MFWLWLWMVLTGCVMITGQISMARGDKPPSRALCEAIVANLIFGALLAWRSL
Ga0187820_10303473	3300017924	Freshwater Sediment	ALTAGVMITSHITMARGDKRPSRALLEAIVANLIFGALLVWRSL
Ga0187820_10475813	3300017924	Freshwater Sediment	MFWVWLWMVLTGCVMITGQISMARGDKPPSRALCEAIVVNLIFGALLAWRSL
Ga0187820_10767952	3300017924	Freshwater Sediment	MFWLWLWMALTTCIVVTNQISIARGDKRPSRALLEAMVANLIFGALLAWRSL
Ga0187807_12984971	3300017926	Freshwater Sediment	MSWFWVWLVLTGGIVITNHISMARGDKRPSRALLEAIVANLIFGALLAWRSL
Ga0187825_100452301	3300017930	Freshwater Sediment	MFWLWLWLTAGVMITSHITKARGDKRPSRALLEAIVANLIYGALLAWRSL
Ga0187814_102248872	3300017932	Freshwater Sediment	MFWVWLWMVLTGCVMITGQISMARGDKRPSRALCEAIVANLIFGALLVWRSL
Ga0187801_100110071	3300017933	Freshwater Sediment	LWLWMALTAGVMITSHITMARGDKRPSRALLEAIVANLIFGALLVWRSL
Ga0187801_100461591	3300017933	Freshwater Sediment	MLWLWLALTAGIMITSHITMARGDKRPPRALLEAIVANLIFGALLAWRSL
Ga0187801_101434751	3300017933	Freshwater Sediment	MFWLWLWMALTAGVMITSHITQARGDKWPPRALLEAIVANLIFGALLAWRSL
Ga0187801_101987582	3300017933	Freshwater Sediment	MFWLWLWMALTAGVMITSHITMARGDKWPSRALLEAIVANLIFGALLVLRSL
Ga0187821_103711911	3300017936	Freshwater Sediment	MFWVWLWMVLTGCVMITGQISMARGDKRPSRALCEAIVANLIF
Ga0187809_101907532	3300017937	Freshwater Sediment	MFWLWMVLTGCVMITGQISMARGDKPPSRALCEAIVANLIFGALLAWRSL
Ga0187809_103737003	3300017937	Freshwater Sediment	MFWLWLWLALTSCIMITNHISKARGDKPSRALWEAIVANLIFG
Ga0187808_103210563	3300017942	Freshwater Sediment	MLGLWLGLTGCIVITNHISMARGDKRPSRDLLEAIVANLIFG
Ga0187819_100149349	3300017943	Freshwater Sediment	MFWLWLWMALTGFIMFTHHISMARGDKRPSRALLEAIVANLIFGALLAWRSL
Ga0187819_106779721	3300017943	Freshwater Sediment	MFWIWLVLTGGIVITNHVSMARGDKRPSRALLEAIVANLIFGALLAW
Ga0187817_104325712	3300017955	Freshwater Sediment	MFWLWLWMALTTCIVVTNQISIARGDKRPSRALCEAIVANLIFGALLVWRSL
Ga0187817_105934632	3300017955	Freshwater Sediment	MLGLWLGLTGCIVITSHISMARGDKRLSRAVSEAIVANLIFGALLAWHSS
Ga0187817_106754262	3300017955	Freshwater Sediment	MFWLWLWMVLTGCVMITGQISMARGDKRPSRALCEAIVANLIFGALLVWRSL
Ga0187823_102458252	3300017993	Freshwater Sediment	GMFWLLLWMALTACVMITSQISIARGDKPSRALLEAIVANLIFGALLAWRSL
Ga0187823_102630121	3300017993	Freshwater Sediment	MFWLWLWMALTAGVMIASHITKARGDKWPSRALLEAIVANLIFGALLALRSL
Ga0187816_100864282	3300017995	Freshwater Sediment	SEGAGMFWLWLALTAGIMITSHISMVRGDKQASRALCEAIVANLIFGALLAWRFL
Ga0187815_102757751	3300018001	Freshwater Sediment	FWVWLWMVLTGCVMITGQISMARGDKPPSRALCEAIVANLIFGALLAWRSL
Ga0193751_10119987	3300019888	Soil	MFWVWLWLVLTSCIMITNHISKARGDKPSRALWEAIVANLIFGALLVWHPS
Ga0210403_103031462	3300020580	Soil	MFWLWLCLALTSCIMITNHISKARGDKPSRALWEAIVANLIFGALLALRSL
Ga0210399_101277432	3300020581	Soil	MFWLRMVLTACIVITSQIRMARGDKWPSRALREAIVANLIFGALLALRSL
Ga0210401_112161692	3300020583	Soil	MFWLWLCLALTSCIMITNHISKARGDKPSRALWEA
Ga0228598_11008532	3300024227	Rhizosphere	MFWLWLWLVLTAGIVITNHISMARGDKQPSRALLEAIVANLIFGALLAWHSS
Ga0207692_105832133	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MFWLWLWVALTGCIMITNHITLARGDKRPSRALWEAIVANLIF
Ga0207693_100589574	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MFWLWLWLWVALTGCIMITNHITLARGDKRRSRALWEAIVANLIFGALLAWRSL
Ga0207663_106187303	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MFWLWLWLALTAGVIITNHISMARGDKRPPRALCEAIVANLTFGALL
Ga0209577_103940323	3300026552	Soil	MFWLWLWMVLTGCIMFTRHITMARGDKRLPRALWDAIVANLIFGALLVWRNSH
Ga0208365_10294762	3300027070	Forest Soil	MFWLWLWLALTAGVMITSHISMVRGDKRPSRALCEAIVANLILGALLAWRFL
Ga0208365_10311421	3300027070	Forest Soil	MALTAGVMITSHTTKVLLEAIVANLIFGALLVWRSL
Ga0208604_10248981	3300027090	Forest Soil	PLEGARMFWYWLWLALTGCIMITNQITMARGDKRPSRALLEAIVANLIFAALLAWRSL
Ga0209446_11629231	3300027698	Bog Forest Soil	MFWLWLWMALTAGVLVTSHITMARGDKRPSRALLEAIVANLIFGALLVWRSL
Ga0209040_103764503	3300027824	Bog Forest Soil	MFWLWLWMALTAGVMITSHITKARGDKWPPRALLEAMVANLIFGACWRCAPCKQMPI
Ga0209040_104332801	3300027824	Bog Forest Soil	MFWLWLWLALTGVMITSHISMVRGDKRPSRALCEAIVANLIFGALLAWR
Ga0209067_105591122	3300027898	Watersheds	MFWLWMALTAGVMITSHITKARGDKWPPRALLEAMVANLIFGALLALRSL
Ga0209698_111195751	3300027911	Watersheds	MFWLWMALTAGVMITSHITKARGDKWPSRALLEAIVANLIFGALLVWRSL
Ga0209069_104543372	3300027915	Watersheds	MYWLWLWMALTAGVMITSHITKARGDKWPSRALLEAIVANLIFGALLVLRSL
Ga0170823_124619921	3300031128	Forest Soil	MFWLWFWMALTAGVMITSHITKARGDKWPPRALLEAIVANLIFGALLAWRPL
Ga0170824_1093996351	3300031231	Forest Soil	MFWLWLSLALTSCIMITHHISMARGDKRLSRALWEAIVVNLIFGALLAWRAL
Ga0170824_1105540762	3300031231	Forest Soil	MFWYWLWLALTGCIMITNHITKARGDQRPSRALWEAIVANLIFGALLAWRSL
Ga0170824_1261953822	3300031231	Forest Soil	MFWLGLWMVLTGCIAITSHITIARGDKRPSRPLREAIVANLIFGALLVLRSL
Ga0170819_147168142	3300031469	Forest Soil	MFWLWLWMALTTCIVVTNQISIARGDKWPSRALLEAIVANLIFGALLA
Ga0310686_1026939912	3300031708	Soil	MFWVWLWLRLTAGIATTNHFSMARGHKRPPRALLEAIVANLIFGALLAWHPS
Ga0310686_1073914702	3300031708	Soil	MFWLWLVLTAGIVITNHFSMARGDKRPPRALLEAIVANLIFGALLAWHSS
Ga0310686_1126298761	3300031708	Soil	MFWLWLWLVLTGGIVITNHVSVARGDKQPSRALLEAIVANLIFGALLAWHSS
Ga0310686_1153371333	3300031708	Soil	MFWLWLWLVLTAGIVITNHFSMARGDKQPSRALLEAIVANLIFGALLAWHSS
Ga0310686_1190842793	3300031708	Soil	MFWLWLWLVLTAGIVITNHISMARGDKQQSRALLEAIVANLIFGALLAWHSS
Ga0306918_102822071	3300031744	Soil	MFWYWLWLALTGCIMITNRISVARGDKPSRALWEAMVANLIFG
Ga0318494_106989691	3300031751	Soil	LWLALTGCIMITNRISVARGDKPSRALWEAMVANLIFGALLAWRSL
Ga0306919_100154847	3300031879	Soil	MFWYWLWLALTGCIMITNRISVARGDKPSRALWEAMVANLIFGALLAWRSL
Ga0318551_107782691	3300031896	Soil	YWLWLALTGCIMITNRISVARGDKPSRALWEAMVANLIFGALLAWRSL
Ga0310916_101921771	3300031942	Soil	MFWYWLWLALTGCIMITNRISVARGDKPSRALWEAMVANLIF
Ga0307479_116955232	3300031962	Hardwood Forest Soil	TLPLEGVGMFWLWLWLALTAGVMITSHISMVRGDKRPSRALCEAIVANLILGALLAWRFL
Ga0307479_117869422	3300031962	Hardwood Forest Soil	MFWLWLWMVLTAYVMITSHMSVARGDKWPPRSLLEAIVANLIFGALLAWRSL
Ga0318545_103277092	3300032042	Soil	LALTGCIMITNRISVARGDKPSRALWEAMVANLIFGALLAWRSL
Ga0318505_103538731	3300032060	Soil	MFWYWLWLALTGCIMITNRISVARGDKPSRALWEAMVANLIFGALLA
Ga0307471_1005853592	3300032180	Hardwood Forest Soil	MFWLWLALTAGVIITSHISMARGDKRPPRALCEAIVANLIFGALLAWRSL
Ga0307471_1012770982	3300032180	Hardwood Forest Soil	MLGLWLALTASVMITSHITRARGDKPSRALWEAIVANLIFGALLVWRSL
Ga0348332_135342912	3300032515	Plant Litter	MFWLWLWLVLTGGIVITNHVSVARGDKQPFRALLEAIVANLIFGALLAWHSS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F072643

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences